Read the Docs build information Build id: 989040 Project: giottoteam-giotto Version: suite Commit: a29f388f1b8d79137df2749b729d6178783d8c7e Date: 2022-06-23T13:54:59.669830Z State: finished Success: False [rtd-command-info] start-time: 2022-06-23T13:55:01.816188Z, end-time: 2022-06-23T13:56:14.968749Z, duration: 73, exit-code: 0 git clone --no-single-branch --depth 50 https://github.com/sistia01/Giotto.git . Cloning into '.'... [rtd-command-info] start-time: 2022-06-23T13:56:15.240200Z, end-time: 2022-06-23T13:56:29.440602Z, duration: 14, exit-code: 0 git checkout --force origin/suite Note: switching to 'origin/suite'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at a29f388f re-commit Sphinx docs [rtd-command-info] start-time: 2022-06-23T13:56:29.687531Z, end-time: 2022-06-23T13:56:29.790894Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2022-06-23T13:56:39.207615Z, end-time: 2022-06-23T13:56:43.781654Z, duration: 4, exit-code: 0 python3.7 -mvirtualenv Using base prefix '/home/docs/.pyenv/versions/3.7.9' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/giottoteam-giotto/envs/suite/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/giottoteam-giotto/envs/suite/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2022-06-23T13:56:44.005958Z, end-time: 2022-06-23T13:56:45.814934Z, duration: 1, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip setuptools<58.3.0 Requirement already satisfied: pip in /home/docs/checkouts/readthedocs.org/user_builds/giottoteam-giotto/envs/suite/lib/python3.7/site-packages (22.1.2) Collecting setuptools<58.3.0 Downloading setuptools-58.2.0-py3-none-any.whl (946 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 946.1/946.1 kB 33.7 MB/s eta 0:00:00 Installing collected packages: setuptools Attempting uninstall: setuptools Found existing installation: setuptools 62.6.0 Uninstalling setuptools-62.6.0: Successfully uninstalled setuptools-62.6.0 Successfully installed setuptools-58.2.0 [rtd-command-info] start-time: 2022-06-23T13:56:46.024423Z, end-time: 2022-06-23T13:56:54.556525Z, duration: 8, exit-code: 0 python -m pip install --upgrade --no-cache-dir mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx sphinx-rtd-theme readthedocs-sphinx-ext<2.2 Collecting mock==1.0.1 Downloading mock-1.0.1.zip (861 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 861.9/861.9 kB 24.9 MB/s eta 0:00:00 Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.0/2.0 MB 147.7 MB/s eta 0:00:00 Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 47.4/47.4 kB 14.9 MB/s eta 0:00:00 Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx Downloading Sphinx-5.0.2-py3-none-any.whl (3.1 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 3.1/3.1 MB 212.7 MB/s eta 0:00:00 Collecting sphinx-rtd-theme Downloading sphinx_rtd_theme-1.0.0-py2.py3-none-any.whl (2.8 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.8/2.8 MB 225.2 MB/s eta 0:00:00 Collecting readthedocs-sphinx-ext<2.2 Downloading readthedocs_sphinx_ext-2.1.8-py2.py3-none-any.whl (11 kB) Collecting future Downloading future-0.18.2.tar.gz (829 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 829.2/829.2 kB 249.7 MB/s eta 0:00:00 Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting docutils>=0.11 Downloading docutils-0.18.1-py2.py3-none-any.whl (570 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 570.0/570.0 kB 240.0 MB/s eta 0:00:00 Collecting sphinxcontrib-htmlhelp>=2.0.0 Downloading sphinxcontrib_htmlhelp-2.0.0-py2.py3-none-any.whl (100 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 100.5/100.5 kB 210.3 MB/s eta 0:00:00 Collecting sphinxcontrib-serializinghtml>=1.1.5 Downloading sphinxcontrib_serializinghtml-1.1.5-py2.py3-none-any.whl (94 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 94.0/94.0 kB 186.3 MB/s eta 0:00:00 Collecting sphinxcontrib-jsmath Downloading sphinxcontrib_jsmath-1.0.1-py2.py3-none-any.whl (5.1 kB) Collecting imagesize Downloading imagesize-1.3.0-py2.py3-none-any.whl (5.2 kB) Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.2.0-py2.py3-none-any.whl (93 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 93.0/93.0 kB 189.0 MB/s eta 0:00:00 Collecting Pygments>=2.0 Downloading Pygments-2.12.0-py3-none-any.whl (1.1 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.1/1.1 MB 23.0 MB/s eta 0:00:00 Collecting packaging Downloading packaging-21.3-py3-none-any.whl (40 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 40.8/40.8 kB 172.5 MB/s eta 0:00:00 Collecting babel>=1.3 Downloading Babel-2.10.3-py3-none-any.whl (9.5 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 9.5/9.5 MB 201.5 MB/s eta 0:00:00 Collecting sphinxcontrib-qthelp Downloading sphinxcontrib_qthelp-1.0.3-py2.py3-none-any.whl (90 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 90.6/90.6 kB 191.0 MB/s eta 0:00:00 Collecting Jinja2>=2.3 Downloading Jinja2-3.1.2-py3-none-any.whl (133 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 133.1/133.1 kB 219.9 MB/s eta 0:00:00 Collecting sphinxcontrib-devhelp Downloading sphinxcontrib_devhelp-1.0.2-py2.py3-none-any.whl (84 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 84.7/84.7 kB 196.5 MB/s eta 0:00:00 Collecting requests>=2.5.0 Downloading requests-2.28.0-py3-none-any.whl (62 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 62.8/62.8 kB 183.7 MB/s eta 0:00:00 Collecting importlib-metadata>=4.4 Downloading importlib_metadata-4.11.4-py3-none-any.whl (18 kB) Collecting sphinxcontrib-applehelp Downloading sphinxcontrib_applehelp-1.0.2-py2.py3-none-any.whl (121 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 121.2/121.2 kB 216.2 MB/s eta 0:00:00 Collecting docutils>=0.11 Downloading docutils-0.17.1-py2.py3-none-any.whl (575 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 575.5/575.5 kB 149.9 MB/s eta 0:00:00 Collecting pytz>=2015.7 Downloading pytz-2022.1-py2.py3-none-any.whl (503 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 503.5/503.5 kB 237.8 MB/s eta 0:00:00 Collecting zipp>=0.5 Downloading zipp-3.8.0-py3-none-any.whl (5.4 kB) Collecting typing-extensions>=3.6.4 Downloading typing_extensions-4.2.0-py3-none-any.whl (24 kB) Collecting MarkupSafe>=2.0 Downloading MarkupSafe-2.1.1-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB) Collecting charset-normalizer~=2.0.0 Downloading charset_normalizer-2.0.12-py3-none-any.whl (39 kB) Collecting certifi>=2017.4.17 Downloading certifi-2022.6.15-py3-none-any.whl (160 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 160.2/160.2 kB 218.5 MB/s eta 0:00:00 Collecting urllib3<1.27,>=1.21.1 Downloading urllib3-1.26.9-py2.py3-none-any.whl (138 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 139.0/139.0 kB 207.0 MB/s eta 0:00:00 Collecting idna<4,>=2.5 Downloading idna-3.3-py3-none-any.whl (61 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 61.2/61.2 kB 191.4 MB/s eta 0:00:00 Collecting pyparsing!=3.0.5,>=2.0.2 Downloading pyparsing-3.0.9-py3-none-any.whl (98 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 98.3/98.3 kB 211.1 MB/s eta 0:00:00 Building wheels for collected packages: mock, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23773 sha256=29a53abec6254c89c91c020e9180ab8fa03d86b0da840a4337155f87cc62b31b Stored in directory: /tmp/pip-ephem-wheel-cache-lhr7sxq7/wheels/7a/94/b1/0fdc5339a5bd487a5cc15421ec200d9ba3e2aa7190e4a727f1 Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491070 sha256=c26ea7d9844ee78b88ee3e952bb5ba16f6c72fdd1e1eb0175a1887ab1d69b4d9 Stored in directory: /tmp/pip-ephem-wheel-cache-lhr7sxq7/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0 Successfully built mock future Installing collected packages: snowballstemmer, pytz, mock, alabaster, zipp, urllib3, typing-extensions, sphinxcontrib-serializinghtml, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, pyparsing, Pygments, pillow, MarkupSafe, imagesize, idna, future, docutils, charset-normalizer, certifi, babel, requests, packaging, Jinja2, importlib-metadata, commonmark, sphinx, readthedocs-sphinx-ext, sphinx-rtd-theme, recommonmark Successfully installed Jinja2-3.1.2 MarkupSafe-2.1.1 Pygments-2.12.0 alabaster-0.7.12 babel-2.10.3 certifi-2022.6.15 charset-normalizer-2.0.12 commonmark-0.8.1 docutils-0.17.1 future-0.18.2 idna-3.3 imagesize-1.3.0 importlib-metadata-4.11.4 mock-1.0.1 packaging-21.3 pillow-5.4.1 pyparsing-3.0.9 pytz-2022.1 readthedocs-sphinx-ext-2.1.8 recommonmark-0.5.0 requests-2.28.0 snowballstemmer-2.2.0 sphinx-5.0.2 sphinx-rtd-theme-1.0.0 sphinxcontrib-applehelp-1.0.2 sphinxcontrib-devhelp-1.0.2 sphinxcontrib-htmlhelp-2.0.0 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-qthelp-1.0.3 sphinxcontrib-serializinghtml-1.1.5 typing-extensions-4.2.0 urllib3-1.26.9 zipp-3.8.0 [rtd-command-info] start-time: 2022-06-23T13:56:54.788526Z, end-time: 2022-06-23T13:57:09.554190Z, duration: 14, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r docs/requirements.txt Collecting bluepy Downloading bluepy-1.3.0.tar.gz (217 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 217.9/217.9 kB 11.3 MB/s eta 0:00:00 Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting sphinx==3.4.3 Downloading Sphinx-3.4.3-py3-none-any.whl (2.9 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.9/2.9 MB 105.6 MB/s eta 0:00:00 Collecting sphinx_rtd_theme==0.5.2 Downloading sphinx_rtd_theme-0.5.2-py2.py3-none-any.whl (9.1 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 9.1/9.1 MB 193.2 MB/s eta 0:00:00 Collecting readthedocs-sphinx-search==0.1.0 Downloading readthedocs_sphinx_search-0.1.0-py3-none-any.whl (26 kB) Collecting sphinx-design Downloading sphinx_design-0.2.0-py3-none-any.whl (1.9 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.9/1.9 MB 219.4 MB/s eta 0:00:00 Collecting sphinx-copybutton Downloading sphinx_copybutton-0.5.0-py3-none-any.whl (12 kB) Collecting sphinx-toolbox Downloading sphinx_toolbox-3.1.1-py3-none-any.whl (512 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 512.0/512.0 kB 241.1 MB/s eta 0:00:00 Requirement already satisfied: requests>=2.5.0 in /home/docs/checkouts/readthedocs.org/user_builds/giottoteam-giotto/envs/suite/lib/python3.7/site-packages (from sphinx==3.4.3->-r docs/requirements.txt (line 3)) (2.28.0) Requirement already satisfied: sphinxcontrib-htmlhelp in /home/docs/checkouts/readthedocs.org/user_builds/giottoteam-giotto/envs/suite/lib/python3.7/site-packages (from sphinx==3.4.3->-r docs/requirements.txt (line 3)) (2.0.0) Requirement already satisfied: sphinxcontrib-applehelp in /home/docs/checkouts/readthedocs.org/user_builds/giottoteam-giotto/envs/suite/lib/python3.7/site-packages (from sphinx==3.4.3->-r docs/requirements.txt (line 3)) (1.0.2) Requirement already satisfied: docutils>=0.12 in /home/docs/checkouts/readthedocs.org/user_builds/giottoteam-giotto/envs/suite/lib/python3.7/site-packages (from sphinx==3.4.3->-r docs/requirements.txt (line 3)) (0.17.1) Requirement already satisfied: Pygments>=2.0 in /home/docs/checkouts/readthedocs.org/user_builds/giottoteam-giotto/envs/suite/lib/python3.7/site-packages (from sphinx==3.4.3->-r docs/requirements.txt (line 3)) (2.12.0) Requirement already satisfied: sphinxcontrib-qthelp in /home/docs/checkouts/readthedocs.org/user_builds/giottoteam-giotto/envs/suite/lib/python3.7/site-packages (from sphinx==3.4.3->-r docs/requirements.txt (line 3)) (1.0.3) Requirement already satisfied: Jinja2>=2.3 in /home/docs/checkouts/readthedocs.org/user_builds/giottoteam-giotto/envs/suite/lib/python3.7/site-packages (from sphinx==3.4.3->-r docs/requirements.txt (line 3)) (3.1.2) Requirement already satisfied: sphinxcontrib-jsmath in /home/docs/checkouts/readthedocs.org/user_builds/giottoteam-giotto/envs/suite/lib/python3.7/site-packages (from sphinx==3.4.3->-r docs/requirements.txt (line 3)) (1.0.1) Requirement already satisfied: snowballstemmer>=1.1 in /home/docs/checkouts/readthedocs.org/user_builds/giottoteam-giotto/envs/suite/lib/python3.7/site-packages (from sphinx==3.4.3->-r docs/requirements.txt (line 3)) (2.2.0) Requirement already satisfied: packaging in /home/docs/checkouts/readthedocs.org/user_builds/giottoteam-giotto/envs/suite/lib/python3.7/site-packages (from sphinx==3.4.3->-r docs/requirements.txt (line 3)) (21.3) Requirement already satisfied: sphinxcontrib-serializinghtml in /home/docs/checkouts/readthedocs.org/user_builds/giottoteam-giotto/envs/suite/lib/python3.7/site-packages (from sphinx==3.4.3->-r docs/requirements.txt (line 3)) (1.1.5) Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/giottoteam-giotto/envs/suite/lib/python3.7/site-packages (from sphinx==3.4.3->-r docs/requirements.txt (line 3)) (58.2.0) Requirement already satisfied: sphinxcontrib-devhelp in /home/docs/checkouts/readthedocs.org/user_builds/giottoteam-giotto/envs/suite/lib/python3.7/site-packages (from sphinx==3.4.3->-r docs/requirements.txt (line 3)) (1.0.2) Requirement already satisfied: alabaster<0.8,>=0.7 in /home/docs/checkouts/readthedocs.org/user_builds/giottoteam-giotto/envs/suite/lib/python3.7/site-packages (from sphinx==3.4.3->-r docs/requirements.txt (line 3)) (0.7.12) Requirement already satisfied: babel>=1.3 in /home/docs/checkouts/readthedocs.org/user_builds/giottoteam-giotto/envs/suite/lib/python3.7/site-packages (from sphinx==3.4.3->-r docs/requirements.txt (line 3)) (2.10.3) Requirement already satisfied: imagesize in /home/docs/checkouts/readthedocs.org/user_builds/giottoteam-giotto/envs/suite/lib/python3.7/site-packages (from sphinx==3.4.3->-r docs/requirements.txt (line 3)) (1.3.0) Collecting docutils>=0.12 Downloading docutils-0.16-py2.py3-none-any.whl (548 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 548.2/548.2 kB 248.1 MB/s eta 0:00:00 Collecting sphinx-design Downloading sphinx_design-0.1.0-py3-none-any.whl (1.9 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.9/1.9 MB 239.7 MB/s eta 0:00:00 Collecting apeye>=0.4.0 Downloading apeye-1.2.0-py3-none-any.whl (118 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 118.5/118.5 kB 207.1 MB/s eta 0:00:00 Collecting beautifulsoup4>=4.9.1 Downloading beautifulsoup4-4.11.1-py3-none-any.whl (128 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 128.2/128.2 kB 219.1 MB/s eta 0:00:00 Collecting html5lib>=1.1 Downloading html5lib-1.1-py2.py3-none-any.whl (112 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 112.2/112.2 kB 222.1 MB/s eta 0:00:00 Collecting ruamel.yaml>=0.16.12 Downloading ruamel.yaml-0.17.21-py3-none-any.whl (109 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 109.5/109.5 kB 216.9 MB/s eta 0:00:00 Collecting lockfile>=0.12.2 Downloading lockfile-0.12.2-py2.py3-none-any.whl (13 kB) Collecting sphinx-prompt>=1.1.0 Downloading sphinx_prompt-1.5.0-py3-none-any.whl (4.5 kB) Collecting dict2css>=0.2.3 Downloading dict2css-0.3.0-py3-none-any.whl (25 kB) Collecting tabulate>=0.8.7 Downloading tabulate-0.8.10-py3-none-any.whl (29 kB) Collecting sphinx-tabs<3.4.0,>=1.2.1 Downloading sphinx_tabs-3.3.1-py3-none-any.whl (10.0 kB) Requirement already satisfied: typing-extensions!=3.10.0.1,>=3.7.4.3 in /home/docs/checkouts/readthedocs.org/user_builds/giottoteam-giotto/envs/suite/lib/python3.7/site-packages (from sphinx-toolbox->-r docs/requirements.txt (line 8)) (4.2.0) Collecting typing-inspect>=0.6.0 Downloading typing_inspect-0.7.1-py3-none-any.whl (8.4 kB) Collecting autodocsumm>=0.2.0 Downloading autodocsumm-0.2.8-py3-none-any.whl (13 kB) Collecting cachecontrol[filecache]>=0.12.6 Downloading CacheControl-0.12.11-py2.py3-none-any.whl (21 kB) Collecting sphinx-jinja2-compat>=0.1.0 Downloading sphinx_jinja2_compat-0.1.2-py3-none-any.whl (12 kB) Collecting sphinx-autodoc-typehints>=1.11.1 Downloading sphinx_autodoc_typehints-1.18.3-py3-none-any.whl (12 kB) Collecting domdf-python-tools>=2.9.0 Downloading domdf_python_tools-3.3.0-py3-none-any.whl (126 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 126.4/126.4 kB 223.8 MB/s eta 0:00:00 Requirement already satisfied: idna>=2.5 in /home/docs/checkouts/readthedocs.org/user_builds/giottoteam-giotto/envs/suite/lib/python3.7/site-packages (from apeye>=0.4.0->sphinx-toolbox->-r docs/requirements.txt (line 8)) (3.3) Collecting platformdirs>=2.3.0 Downloading platformdirs-2.5.2-py3-none-any.whl (14 kB) Requirement already satisfied: pytz>=2015.7 in /home/docs/checkouts/readthedocs.org/user_builds/giottoteam-giotto/envs/suite/lib/python3.7/site-packages (from babel>=1.3->sphinx==3.4.3->-r docs/requirements.txt (line 3)) (2022.1) Collecting soupsieve>1.2 Downloading soupsieve-2.3.2.post1-py3-none-any.whl (37 kB) Collecting msgpack>=0.5.2 Downloading msgpack-1.0.4-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (299 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 299.8/299.8 kB 241.4 MB/s eta 0:00:00 Collecting cssutils>=2.2.0 Downloading cssutils-2.4.2-py3-none-any.whl (404 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 404.8/404.8 kB 234.6 MB/s eta 0:00:00 Collecting natsort>=7.0.1 Downloading natsort-8.1.0-py3-none-any.whl (37 kB) Requirement already satisfied: importlib-metadata>=3.6.0 in /home/docs/checkouts/readthedocs.org/user_builds/giottoteam-giotto/envs/suite/lib/python3.7/site-packages (from domdf-python-tools>=2.9.0->sphinx-toolbox->-r docs/requirements.txt (line 8)) (4.11.4) Collecting six>=1.9 Downloading six-1.16.0-py2.py3-none-any.whl (11 kB) Collecting webencodings Downloading webencodings-0.5.1-py2.py3-none-any.whl (11 kB) Requirement already satisfied: MarkupSafe>=2.0 in /home/docs/checkouts/readthedocs.org/user_builds/giottoteam-giotto/envs/suite/lib/python3.7/site-packages (from Jinja2>=2.3->sphinx==3.4.3->-r docs/requirements.txt (line 3)) (2.1.1) Requirement already satisfied: certifi>=2017.4.17 in /home/docs/checkouts/readthedocs.org/user_builds/giottoteam-giotto/envs/suite/lib/python3.7/site-packages (from requests>=2.5.0->sphinx==3.4.3->-r docs/requirements.txt (line 3)) (2022.6.15) Requirement already satisfied: charset-normalizer~=2.0.0 in /home/docs/checkouts/readthedocs.org/user_builds/giottoteam-giotto/envs/suite/lib/python3.7/site-packages (from requests>=2.5.0->sphinx==3.4.3->-r docs/requirements.txt (line 3)) (2.0.12) Requirement already satisfied: urllib3<1.27,>=1.21.1 in /home/docs/checkouts/readthedocs.org/user_builds/giottoteam-giotto/envs/suite/lib/python3.7/site-packages (from requests>=2.5.0->sphinx==3.4.3->-r docs/requirements.txt (line 3)) (1.26.9) Collecting ruamel.yaml.clib>=0.2.6 Downloading ruamel.yaml.clib-0.2.6-cp37-cp37m-manylinux1_x86_64.whl (546 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 546.8/546.8 kB 245.3 MB/s eta 0:00:00 Collecting sphinx-autodoc-typehints>=1.11.1 Downloading sphinx_autodoc_typehints-1.18.2-py3-none-any.whl (12 kB) Downloading sphinx_autodoc_typehints-1.18.1-py3-none-any.whl (12 kB) Downloading sphinx_autodoc_typehints-1.18.0-py3-none-any.whl (12 kB) Downloading sphinx_autodoc_typehints-1.17.1-py3-none-any.whl (12 kB) Downloading sphinx_autodoc_typehints-1.17.0-py3-none-any.whl (12 kB) Downloading sphinx_autodoc_typehints-1.16.0-py3-none-any.whl (12 kB) Downloading sphinx_autodoc_typehints-1.15.3-py3-none-any.whl (11 kB) Downloading sphinx_autodoc_typehints-1.15.2-py3-none-any.whl (11 kB) Downloading sphinx_autodoc_typehints-1.15.1-py3-none-any.whl (11 kB) Downloading sphinx_autodoc_typehints-1.15.0-py3-none-any.whl (11 kB) Downloading sphinx_autodoc_typehints-1.14.1-py3-none-any.whl (11 kB) Downloading sphinx_autodoc_typehints-1.14.0-py3-none-any.whl (11 kB) Downloading sphinx_autodoc_typehints-1.13.1-py3-none-any.whl (10 kB) Downloading sphinx_autodoc_typehints-1.13.0-py3-none-any.whl (10 kB) Downloading sphinx_autodoc_typehints-1.12.0-py3-none-any.whl (9.4 kB) Collecting sphinx-tabs<3.4.0,>=1.2.1 Downloading sphinx_tabs-3.3.0-py3-none-any.whl (10 kB) Downloading sphinx_tabs-3.2.0-py3-none-any.whl (9.8 kB) Collecting mypy-extensions>=0.3.0 Downloading mypy_extensions-0.4.3-py2.py3-none-any.whl (4.5 kB) Requirement already satisfied: pyparsing!=3.0.5,>=2.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/giottoteam-giotto/envs/suite/lib/python3.7/site-packages (from packaging->sphinx==3.4.3->-r docs/requirements.txt (line 3)) (3.0.9) Requirement already satisfied: zipp>=0.5 in /home/docs/checkouts/readthedocs.org/user_builds/giottoteam-giotto/envs/suite/lib/python3.7/site-packages (from importlib-metadata>=3.6.0->domdf-python-tools>=2.9.0->sphinx-toolbox->-r docs/requirements.txt (line 8)) (3.8.0) Building wheels for collected packages: bluepy Building wheel for bluepy (setup.py): started Building wheel for bluepy (setup.py): finished with status 'done' Created wheel for bluepy: filename=bluepy-1.3.0-cp37-cp37m-linux_x86_64.whl size=554823 sha256=9b6b07f4abc38336fc87dd4a23bb6867ab8c81815603007962690318089783e2 Stored in directory: /tmp/pip-ephem-wheel-cache-25hayo2w/wheels/29/02/3d/a378a65b6771fb8359bf2c862f0ffe6f4bd6b0af88f4309c1c Successfully built bluepy Installing collected packages: webencodings, mypy-extensions, msgpack, lockfile, bluepy, typing-inspect, tabulate, soupsieve, six, ruamel.yaml.clib, readthedocs-sphinx-search, platformdirs, natsort, docutils, sphinx-jinja2-compat, sphinx, ruamel.yaml, html5lib, domdf-python-tools, cssutils, cachecontrol, beautifulsoup4, sphinx-tabs, sphinx_rtd_theme, sphinx-prompt, sphinx-design, sphinx-copybutton, sphinx-autodoc-typehints, dict2css, autodocsumm, apeye, sphinx-toolbox Attempting uninstall: docutils Found existing installation: docutils 0.17.1 Uninstalling docutils-0.17.1: Successfully uninstalled docutils-0.17.1 Attempting uninstall: sphinx Found existing installation: Sphinx 5.0.2 Uninstalling Sphinx-5.0.2: Successfully uninstalled Sphinx-5.0.2 Attempting uninstall: sphinx_rtd_theme Found existing installation: sphinx-rtd-theme 1.0.0 Uninstalling sphinx-rtd-theme-1.0.0: Successfully uninstalled sphinx-rtd-theme-1.0.0 Successfully installed apeye-1.2.0 autodocsumm-0.2.8 beautifulsoup4-4.11.1 bluepy-1.3.0 cachecontrol-0.12.11 cssutils-2.4.2 dict2css-0.3.0 docutils-0.16 domdf-python-tools-3.3.0 html5lib-1.1 lockfile-0.12.2 msgpack-1.0.4 mypy-extensions-0.4.3 natsort-8.1.0 platformdirs-2.5.2 readthedocs-sphinx-search-0.1.0 ruamel.yaml-0.17.21 ruamel.yaml.clib-0.2.6 six-1.16.0 soupsieve-2.3.2.post1 sphinx-3.4.3 sphinx-autodoc-typehints-1.12.0 sphinx-copybutton-0.5.0 sphinx-design-0.1.0 sphinx-jinja2-compat-0.1.2 sphinx-prompt-1.5.0 sphinx-tabs-3.2.0 sphinx-toolbox-3.1.1 sphinx_rtd_theme-0.5.2 tabulate-0.8.10 typing-inspect-0.7.1 webencodings-0.5.1 [rtd-command-info] start-time: 2022-06-23T13:57:11.231453Z, end-time: 2022-06-23T13:57:11.300051Z, duration: 0, exit-code: 0 cat docs/source/conf.py # Configuration file for the Sphinx documentation builder. # # This file only contains a selection of the most common options. For a full # list see the documentation: # https://www.sphinx-doc.org/en/master/usage/configuration.html # -- Path setup -------------------------------------------------------------- # If extensions (or modules to document with autodoc) are in another directory, # add these directories to sys.path here. If the directory is relative to the # documentation root, use os.path.abspath to make it absolute, like shown here. # #import os #import sys #sys.path.insert(0, os.path.abspath('.')) # -- Project information ----------------------------------------------------- project = 'Giotto' copyright = '2021, Ruben Dries, Qian Zhu, Huipeng Li, Rui Dong, Guo-Cheng Yuan' author = 'Developed by Ruben Dries, Qian Zhu, Huipeng Li, Rui Dong, Guo-Cheng Yuan.' # The full version, including alpha/beta/rc tags release = '1.0' # -- General configuration --------------------------------------------------- # Add any Sphinx extension module names here, as strings. They can be # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom # ones. #import os #import sys #from sphinx.application import Sphinx import sphinx_rtd_theme extensions = [ 'sphinx.ext.autosectionlabel', 'sphinx.ext.autodoc', 'sphinx_rtd_theme', 'sphinx_design', 'sphinx_copybutton', 'sphinx_toolbox', 'sphinx_toolbox.shields', 'sphinx_toolbox.github', 'm2r2', #'sphinxcontrib.images' #'myst_parser' #myst_parser caused a fatal error #'sphinxcontrib.spelling' #spell checker fatal error ] #Added for m2r2 extension source_suffix = ['.rst', '.md'] # Configuration for sphinx_toolbox github_repository = "Giotto" github_username = "RubD" # Add any paths that contain templates here, relative to this directory. templates_path = ['_templates'] # List of patterns, relative to source directory, that match files and # directories to ignore when looking for source files. # This pattern also affects html_static_path and html_extra_path. exclude_patterns = [] suppress_warnings = ["Unknown directive type dropdown", 'autosectionlabel.*'] # -- Options for HTML output ------------------------------------------------- # The theme to use for HTML and HTML Help pages. See the documentation for # a list of builtin themes. # Add any paths that contain custom static files (such as style sheets) here, # relative to this directory. They are copied after the builtin static files, # so a file named "default.css" will overwrite the builtin "default.css". html_theme = "sphinx_rtd_theme" html_theme_path = [sphinx_rtd_theme.get_html_theme_path()] html_static_path = ["_static"] html_logo = "images/GiottoLogo.png" html_theme_options = { 'logo_only': True, 'display_version': True, 'navigation_depth': 4, #Toc Tree Options 'collapse_navigation': True, 'sticky_navigation': True, 'body_max_width': 'none' } html_sidebars = { '**': ['globaltoc.html', 'relations.html', 'sourcelink.html', 'searchbox.html'] } html_css_files = ["css/theme_edits.css"] panels_add_fontawesome_latex = True panels_add_bootstrap_css = True # Toc Tree options navtree_root_links = True navtree_shift = False def setup(app): app.add_css_file("css/theme_edits.css") #Link badges def get_badge_inputs(text, cls: str = ""): return text, cls.split() def get_link_badge_inputs(link, text=None, type="link", cls: str = "", tooltip=None): return link, text or link, type, cls.split(), tooltip #Copy clipboard image #To use a different image for your copy buttons, do the following: #Place the image in the _static/ folder of your site. #Set the copybutton_image_path variable in your conf.py to be the path to your image file, relative to _static/. #copybutton_image_path = "_static/AdditionalImages/copyclipboard.png" ########################################################################### # auto-created readthedocs.org specific configuration # ########################################################################### # # The following code was added during an automated build on readthedocs.org # It is auto created and injected for every build. The result is based on the # conf.py.tmpl file found in the readthedocs.org codebase: # https://github.com/rtfd/readthedocs.org/blob/main/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl # # Note: this file shouldn't rely on extra dependencies. import importlib import sys import os.path # Borrowed from six. PY3 = sys.version_info[0] == 3 string_types = str if PY3 else basestring from sphinx import version_info # Get suffix for proper linking to GitHub # This is deprecated in Sphinx 1.3+, # as each page can have its own suffix if globals().get('source_suffix', False): if isinstance(source_suffix, string_types): SUFFIX = source_suffix elif isinstance(source_suffix, (list, tuple)): # Sphinx >= 1.3 supports list/tuple to define multiple suffixes SUFFIX = source_suffix[0] elif isinstance(source_suffix, dict): # Sphinx >= 1.8 supports a mapping dictionary for multiple suffixes SUFFIX = list(source_suffix.keys())[0] # make a ``list()`` for py2/py3 compatibility else: # default to .rst SUFFIX = '.rst' else: SUFFIX = '.rst' # Add RTD Static Path. Add to the end because it overwrites previous files. if not 'html_static_path' in globals(): html_static_path = [] if os.path.exists('_static'): html_static_path.append('_static') # Add RTD Theme only if they aren't overriding it already using_rtd_theme = ( ( 'html_theme' in globals() and html_theme in ['default'] and # Allow people to bail with a hack of having an html_style 'html_style' not in globals() ) or 'html_theme' not in globals() ) if using_rtd_theme: theme = importlib.import_module('sphinx_rtd_theme') html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} if 'html_theme_path' in globals(): html_theme_path.append(theme.get_html_theme_path()) else: html_theme_path = [theme.get_html_theme_path()] if globals().get('websupport2_base_url', False): websupport2_base_url = 'https://readthedocs.com/websupport' websupport2_static_url = 'https://assets.readthedocs.com/' #Add project information to the template context. context = { 'using_theme': using_rtd_theme, 'html_theme': html_theme, 'current_version': "suite", 'version_slug': "suite", 'MEDIA_URL': "https://media.readthedocs.com/media/", 'STATIC_URL': "https://assets.readthedocs.com/", 'PRODUCTION_DOMAIN': "readthedocs.com", 'proxied_static_path': "/_/static/", 'versions': [ ], 'downloads': [ ("pdf", "//giottoteam-giotto.readthedocs-hosted.com/_/downloads/en/suite/pdf/"), ("html", "//giottoteam-giotto.readthedocs-hosted.com/_/downloads/en/suite/htmlzip/"), ("epub", "//giottoteam-giotto.readthedocs-hosted.com/_/downloads/en/suite/epub/"), ], 'subprojects': [ ], 'slug': 'giottoteam-giotto', 'name': u'Giotto', 'rtd_language': u'en', 'programming_language': u'words', 'canonical_url': 'https://giottoteam-giotto.readthedocs-hosted.com/en/latest/', 'analytics_code': 'None', 'single_version': False, 'conf_py_path': '/docs/source/', 'api_host': 'https://readthedocs.com', 'github_user': 'sistia01', 'proxied_api_host': '/_', 'github_repo': 'Giotto', 'github_version': 'suite', 'display_github': True, 'bitbucket_user': 'None', 'bitbucket_repo': 'None', 'bitbucket_version': 'suite', 'display_bitbucket': False, 'gitlab_user': 'None', 'gitlab_repo': 'None', 'gitlab_version': 'suite', 'display_gitlab': False, 'READTHEDOCS': True, 'using_theme': (html_theme == "default"), 'new_theme': (html_theme == "sphinx_rtd_theme"), 'source_suffix': SUFFIX, 'ad_free': False, 'docsearch_disabled': False, 'user_analytics_code': '', 'global_analytics_code': 'UA-17997319-2', 'commit': 'a29f388f', } # For sphinx >=1.8 we can use html_baseurl to set the canonical URL. # https://www.sphinx-doc.org/en/master/usage/configuration.html#confval-html_baseurl if version_info >= (1, 8): if not globals().get('html_baseurl'): html_baseurl = context['canonical_url'] context['canonical_url'] = None if 'html_context' in globals(): html_context.update(context) else: html_context = context # Add custom RTD extension if 'extensions' in globals(): # Insert at the beginning because it can interfere # with other extensions. # See https://github.com/rtfd/readthedocs.org/pull/4054 extensions.insert(0, "readthedocs_ext.readthedocs") else: extensions = ["readthedocs_ext.readthedocs"] # Add External version warning banner to the external version documentation if 'branch' == 'external': extensions.insert(1, "readthedocs_ext.external_version_warning") readthedocs_vcs_url = 'None' readthedocs_build_url = 'https://readthedocs.com/projects/giottoteam-giotto/builds/989040/' project_language = 'en' # User's Sphinx configurations language_user = globals().get('language', None) latex_engine_user = globals().get('latex_engine', None) latex_elements_user = globals().get('latex_elements', None) # Remove this once xindy gets installed in Docker image and XINDYOPS # env variable is supported # https://github.com/rtfd/readthedocs-docker-images/pull/98 latex_use_xindy = False chinese = any([ language_user in ('zh_CN', 'zh_TW'), project_language in ('zh_CN', 'zh_TW'), ]) japanese = any([ language_user == 'ja', project_language == 'ja', ]) if chinese: latex_engine = latex_engine_user or 'xelatex' latex_elements_rtd = { 'preamble': '\\usepackage[UTF8]{ctex}\n', } latex_elements = latex_elements_user or latex_elements_rtd elif japanese: latex_engine = latex_engine_user or 'platex' # Make sure our build directory is always excluded exclude_patterns = globals().get('exclude_patterns', []) exclude_patterns.extend(['_build']) [rtd-command-info] start-time: 2022-06-23T13:57:11.622976Z, end-time: 2022-06-23T13:57:12.352113Z, duration: 0, exit-code: 2 python -m sphinx -T -E -b html -d _build/doctrees -D language=en . _build/html Running Sphinx v3.4.3 loading translations [en]... done Traceback (most recent call last): File "/home/docs/checkouts/readthedocs.org/user_builds/giottoteam-giotto/envs/suite/lib/python3.7/site-packages/sphinx/registry.py", line 417, in load_extension mod = import_module(extname) File "/home/docs/checkouts/readthedocs.org/user_builds/giottoteam-giotto/envs/suite/lib/python3.7/importlib/__init__.py", line 127, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "", line 1006, in _gcd_import File "", line 983, in _find_and_load File "", line 965, in _find_and_load_unlocked ModuleNotFoundError: No module named 'm2r2' The above exception was the direct cause of the following exception: Traceback (most recent call last): File "/home/docs/checkouts/readthedocs.org/user_builds/giottoteam-giotto/envs/suite/lib/python3.7/site-packages/sphinx/cmd/build.py", line 279, in build_main args.tags, args.verbosity, args.jobs, args.keep_going) File "/home/docs/checkouts/readthedocs.org/user_builds/giottoteam-giotto/envs/suite/lib/python3.7/site-packages/sphinx/application.py", line 245, in __init__ self.setup_extension(extension) File "/home/docs/checkouts/readthedocs.org/user_builds/giottoteam-giotto/envs/suite/lib/python3.7/site-packages/sphinx/application.py", line 402, in setup_extension self.registry.load_extension(self, extname) File "/home/docs/checkouts/readthedocs.org/user_builds/giottoteam-giotto/envs/suite/lib/python3.7/site-packages/sphinx/registry.py", line 421, in load_extension err) from err sphinx.errors.ExtensionError: Could not import extension m2r2 (exception: No module named 'm2r2') Extension error: Could not import extension m2r2 (exception: No module named 'm2r2')