Read the Docs build information Build id: 955010 Project: institute-for-disease-modeling-emodpy-malaria Version: latest Commit: 91b51e1774d04b8ff0b05090ad4e6a81f74fced3 Date: 2022-05-20T22:57:05.294259Z State: finished Success: True [rtd-command-info] start-time: 2022-05-20T22:58:11.303278Z, end-time: 2022-05-20T22:58:16.158311Z, duration: 4, exit-code: 0 git clone --no-single-branch --depth 50 git@github.com:InstituteforDiseaseModeling/emodpy-malaria.git . Cloning into '.'... Warning: Permanently added 'github.com,192.30.255.112' (ECDSA) to the list of known hosts. [rtd-command-info] start-time: 2022-05-20T22:58:16.359312Z, end-time: 2022-05-20T22:58:16.604232Z, duration: 0, exit-code: 0 git checkout --force origin/main Note: switching to 'origin/main'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 91b51e1 Bump version: 2.1.9 → 2.1.10 [rtd-command-info] start-time: 2022-05-20T22:58:16.865774Z, end-time: 2022-05-20T22:58:16.955611Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2022-05-20T22:58:17.982478Z, end-time: 2022-05-20T22:58:23.050775Z, duration: 5, exit-code: 0 python3.8 -mvirtualenv Using base prefix '/home/docs/.pyenv/versions/3.8.6' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin/python3.8 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2022-05-20T22:58:23.248223Z, end-time: 2022-05-20T22:58:25.345342Z, duration: 2, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip setuptools<58.3.0 Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/simple Requirement already satisfied: pip in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (22.1) Collecting setuptools<58.3.0 Downloading setuptools-58.2.0-py3-none-any.whl (946 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 946.1/946.1 kB 27.5 MB/s eta 0:00:00 Installing collected packages: setuptools Attempting uninstall: setuptools Found existing installation: setuptools 62.3.2 Uninstalling setuptools-62.3.2: Successfully uninstalled setuptools-62.3.2 Successfully installed setuptools-58.2.0 [rtd-command-info] start-time: 2022-05-20T22:58:25.539997Z, end-time: 2022-05-20T22:58:51.668465Z, duration: 26, exit-code: 0 python -m pip install --upgrade --no-cache-dir mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<2.2 jinja2<3.1.0 Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/simple Collecting mock==1.0.1 Downloading mock-1.0.1.zip (861 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 861.9/861.9 kB 35.1 MB/s eta 0:00:00 Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting pillow==5.4.1 Downloading Pillow-5.4.1.tar.gz (16.0 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 16.0/16.0 MB 145.9 MB/s eta 0:00:00 Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting commonmark==0.8.1 Downloading 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finished with status 'done' Collecting docutils>=0.11 Downloading docutils-0.18.1-py2.py3-none-any.whl (570 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 570.0/570.0 kB 290.0 MB/s eta 0:00:00 Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.2.0-py2.py3-none-any.whl (93 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 93.0/93.0 kB 256.1 MB/s eta 0:00:00 Collecting babel!=2.0,>=1.3 Downloading Babel-2.10.1-py3-none-any.whl (9.5 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 9.5/9.5 MB 207.3 MB/s eta 0:00:00 Collecting docutils>=0.11 Downloading docutils-0.17.1-py2.py3-none-any.whl (575 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 575.5/575.5 kB 291.4 MB/s eta 0:00:00 Collecting imagesize Downloading imagesize-1.3.0-py2.py3-none-any.whl (5.2 kB) Collecting sphinxcontrib-websupport Downloading sphinxcontrib_websupport-1.2.4-py2.py3-none-any.whl (39 kB) Collecting six>=1.5 Downloading six-1.16.0-py2.py3-none-any.whl (11 kB) Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from sphinx<2) (58.2.0) Collecting Pygments>=2.0 Downloading Pygments-2.12.0-py3-none-any.whl (1.1 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.1/1.1 MB 252.2 MB/s eta 0:00:00 Collecting packaging Downloading packaging-21.3-py3-none-any.whl (40 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 40.8/40.8 kB 220.2 MB/s eta 0:00:00 Collecting requests>=2.0.0 Downloading requests-2.27.1-py2.py3-none-any.whl (63 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 63.1/63.1 kB 237.8 MB/s eta 0:00:00 Collecting MarkupSafe>=2.0 Downloading MarkupSafe-2.1.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB) Collecting pytz>=2015.7 Downloading pytz-2022.1-py2.py3-none-any.whl (503 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 503.5/503.5 kB 283.6 MB/s eta 0:00:00 Collecting charset-normalizer~=2.0.0 Downloading charset_normalizer-2.0.12-py3-none-any.whl (39 kB) 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'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23773 sha256=b2c42ea94d4b941236ff7253a54ca6c43284afd297e09a7cbd37b3a53818b865 Stored in directory: /tmp/pip-ephem-wheel-cache-s7296fhx/wheels/41/7c/21/90057f91c6ead7c77a90c52d6e85ca48bf82d8b0d3f8dfbb65 Building wheel for pillow (setup.py): started Building wheel for pillow (setup.py): finished with status 'done' Created wheel for pillow: filename=Pillow-5.4.1-cp38-cp38-linux_x86_64.whl size=1260048 sha256=bb79bc59e9b413e8366908345bded5e367f7fb4fddc828ae95392734ba7318cc Stored in directory: /tmp/pip-ephem-wheel-cache-s7296fhx/wheels/5f/a8/6b/5b7b3f764d879214eb03570f74d2b086201eb514e6ffa68d6d Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491070 sha256=7d57106b9a76ff9ac4454c7c669e4e8bc1afb42c832e7922da07cf956d1b1ee2 Stored in directory: /tmp/pip-ephem-wheel-cache-s7296fhx/wheels/8e/70/28/3d6ccd6e315f65f245da085482a2e1c7d14b90b30f239e2cf4 Successfully built mock pillow future Installing collected packages: snowballstemmer, pytz, mock, alabaster, urllib3, sphinxcontrib-serializinghtml, six, pyparsing, Pygments, pillow, MarkupSafe, imagesize, idna, future, docutils, charset-normalizer, certifi, babel, sphinxcontrib-websupport, requests, packaging, jinja2, commonmark, sphinx, readthedocs-sphinx-ext, sphinx-rtd-theme, recommonmark Successfully installed MarkupSafe-2.1.1 Pygments-2.12.0 alabaster-0.7.12 babel-2.10.1 certifi-2022.5.18.1 charset-normalizer-2.0.12 commonmark-0.8.1 docutils-0.17.1 future-0.18.2 idna-3.3 imagesize-1.3.0 jinja2-3.0.3 mock-1.0.1 packaging-21.3 pillow-5.4.1 pyparsing-3.0.9 pytz-2022.1 readthedocs-sphinx-ext-2.1.6 recommonmark-0.5.0 requests-2.27.1 six-1.16.0 snowballstemmer-2.2.0 sphinx-1.8.6 sphinx-rtd-theme-0.4.3 sphinxcontrib-serializinghtml-1.1.5 sphinxcontrib-websupport-1.2.4 urllib3-1.26.9 [rtd-command-info] start-time: 2022-05-20T22:58:51.875613Z, end-time: 2022-05-20T22:59:24.092645Z, duration: 32, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r requirements.txt Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/simple Collecting emodpy~=1.16 Downloading https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/emodpy/1.18.2/emodpy-1.18.2-py3-none-any.whl (117 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 117.2/117.2 kB 4.3 MB/s eta 0:00:00 Collecting emod-malaria==0.0.15 Downloading https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/emod-malaria/0.0.15/emod_malaria-0.0.15-py3-none-any.whl (3.5 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 3.5/3.5 MB 14.3 MB/s eta 0:00:00 Collecting astunparse Downloading astunparse-1.6.3-py2.py3-none-any.whl (12 kB) Collecting keyring Downloading keyring-23.5.0-py3-none-any.whl (33 kB) Collecting bs4 Downloading bs4-0.0.1.tar.gz (1.1 kB) Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting matplotlib Downloading matplotlib-3.5.2-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.whl (11.3 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 11.3/11.3 MB 175.3 MB/s eta 0:00:00 Collecting astor Downloading astor-0.8.1-py2.py3-none-any.whl (27 kB) Collecting idmtools-models~=1.6 Downloading https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/idmtools-models/1.6.6/idmtools_models-1.6.6-py3-none-any.whl (24 kB) Collecting idmtools-platform-comps~=1.6 Downloading https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/idmtools-platform-comps/1.6.6/idmtools_platform_comps-1.6.6-py3-none-any.whl (179 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 179.4/179.4 kB 18.0 MB/s eta 0:00:00 Collecting idmtools~=1.6 Downloading https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/idmtools/1.6.6/idmtools-1.6.6-py3-none-any.whl 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Stored in directory: /tmp/pip-ephem-wheel-cache-u83dq9vl/wheels/75/78/21/68b124549c9bdc94f822c02fb9aa3578a669843f9767776bca Building wheel for parse (setup.py): started Building wheel for parse (setup.py): finished with status 'done' Created wheel for parse: filename=parse-1.19.0-py3-none-any.whl size=24591 sha256=c2c0e6acf2f3451915fdfb44fe1d6573a6df6d1df8bdbb89a8a76cff8f33b79f Stored in directory: /tmp/pip-ephem-wheel-cache-u83dq9vl/wheels/e5/33/1f/68392720485b3ecf125a69e700baaab7624616deedea2fa6e2 Building wheel for prodict (setup.py): started Building wheel for prodict (setup.py): finished with status 'done' Created wheel for prodict: filename=prodict-0.8.18-py3-none-any.whl size=4223 sha256=ffd627befaa4a15f532b350317aa538f0b4ef955860c29e0d376fc4893695b23 Stored in directory: /tmp/pip-ephem-wheel-cache-u83dq9vl/wheels/f7/87/da/f7f3dad926a33705d391981f28b2c2d2b4bc7e1e4804e6fdfe Building wheel for sklearn (setup.py): started Building wheel for sklearn (setup.py): finished with status 'done' Created wheel for sklearn: filename=sklearn-0.0-py2.py3-none-any.whl size=1310 sha256=9fbecda3acd0c24efb1f14db7b7a6b5d52c5069decdb003f7e850984e0176d69 Stored in directory: /tmp/pip-ephem-wheel-cache-u83dq9vl/wheels/22/0b/40/fd3f795caaa1fb4c6cb738bc1f56100be1e57da95849bfc897 Building wheel for docopt (setup.py): started Building wheel for docopt (setup.py): finished with status 'done' Created wheel for docopt: filename=docopt-0.6.2-py2.py3-none-any.whl size=13723 sha256=349965b7bfae7717fc090802164dc77f8c2a137d267d24c52be5489fe9a37fba Stored in directory: /tmp/pip-ephem-wheel-cache-u83dq9vl/wheels/56/ea/58/ead137b087d9e326852a851351d1debf4ada529b6ac0ec4e8c Successfully built bs4 parse prodict sklearn docopt Installing collected packages: tabulate, prodict, parse, iniconfig, emod-malaria, docopt, cached-property, zipp, xdg, tqdm, tomli, threadpoolctl, soupsieve, shapely, pyyaml, python-dateutil, pyproj, pycparser, py, pluggy, pillow, packaging, numpy, natsort, more-itertools, lz4, kiwisolver, joblib, jeepney, humanfriendly, graphviz, geographiclib, fonttools, diskcache, cycler, click, backoff, attrs, astunparse, astor, yarg, scipy, pytest, pyCOMPS, pandas, matplotlib, importlib-metadata, coloredlogs, cffi, beautifulsoup4, scikit-learn, pytest-lazy-fixture, pygit2, pipreqs, cryptography, bs4, sklearn, SecretStorage, idmtools, keyring, idmtools-platform-comps, idmtools-models, emod-api, emodpy Attempting uninstall: pillow Found existing installation: Pillow 5.4.1 Uninstalling Pillow-5.4.1: Successfully uninstalled Pillow-5.4.1 Attempting uninstall: packaging Found existing installation: packaging 21.3 Uninstalling packaging-21.3: Successfully uninstalled packaging-21.3 Successfully installed SecretStorage-3.3.2 astor-0.8.1 astunparse-1.6.3 attrs-21.4.0 backoff-1.10.0 beautifulsoup4-4.11.1 bs4-0.0.1 cached-property-1.5.2 cffi-1.15.0 click-7.1.2 coloredlogs-15.0.1 cryptography-37.0.2 cycler-0.11.0 diskcache-5.2.1 docopt-0.6.2 emod-api-1.25.1 emod-malaria-0.0.15 emodpy-1.18.2 fonttools-4.33.3 geographiclib-2.0 graphviz-0.20 humanfriendly-10.0 idmtools-1.6.6 idmtools-models-1.6.6 idmtools-platform-comps-1.6.6 importlib-metadata-4.11.3 iniconfig-1.1.1 jeepney-0.8.0 joblib-1.1.0 keyring-23.5.0 kiwisolver-1.4.2 lz4-4.0.0 matplotlib-3.5.2 more-itertools-8.8.0 natsort-8.1.0 numpy-1.22.4 packaging-20.9 pandas-1.1.5 parse-1.19.0 pillow-9.1.1 pipreqs-0.4.11 pluggy-0.13.1 prodict-0.8.18 py-1.11.0 pyCOMPS-2.6.0 pycparser-2.21 pygit2-1.5.0 pyproj-3.3.1 pytest-7.1.2 pytest-lazy-fixture-0.6.3 python-dateutil-2.8.2 pyyaml-5.4.1 scikit-learn-1.1.1 scipy-1.8.1 shapely-1.8.2 sklearn-0.0 soupsieve-2.3.2.post1 tabulate-0.8.9 threadpoolctl-3.1.0 tomli-2.0.1 tqdm-4.64.0 xdg-5.1.1 yarg-0.1.9 zipp-3.8.0 [rtd-command-info] start-time: 2022-05-20T22:59:24.325714Z, end-time: 2022-05-20T22:59:29.220998Z, duration: 4, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r docs/requirements.txt Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/simple Collecting plantweb~=1.2.1 Downloading plantweb-1.2.1-py3-none-any.whl (20 kB) Collecting sphinx-copybutton~=0.3.1 Downloading sphinx_copybutton-0.3.3-py3-none-any.whl (12 kB) Collecting sphinx-rtd-theme~=0.5.0 Downloading sphinx_rtd_theme-0.5.2-py2.py3-none-any.whl (9.1 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 9.1/9.1 MB 95.9 MB/s eta 0:00:00 Collecting sphinxcontrib-napoleon~=0.7 Downloading sphinxcontrib_napoleon-0.7-py2.py3-none-any.whl (17 kB) Collecting sphinxcontrib-programoutput~=0.16 Downloading sphinxcontrib_programoutput-0.17-py2.py3-none-any.whl (22 kB) Collecting sphinx~=4.4.0 Downloading Sphinx-4.4.0-py3-none-any.whl (3.1 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 3.1/3.1 MB 150.8 MB/s eta 0:00:00 Collecting sphinxext.remoteliteralinclude Downloading sphinxext_remoteliteralinclude-0.3.0-py3-none-any.whl (6.3 kB) Requirement already satisfied: six in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from plantweb~=1.2.1->-r docs/requirements.txt (line 1)) (1.16.0) Requirement already satisfied: requests in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from plantweb~=1.2.1->-r docs/requirements.txt (line 1)) (2.27.1) Requirement already satisfied: docutils in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from plantweb~=1.2.1->-r docs/requirements.txt (line 1)) (0.17.1) Collecting docutils Downloading docutils-0.16-py2.py3-none-any.whl (548 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 548.2/548.2 kB 249.0 MB/s eta 0:00:00 Collecting pockets>=0.3 Downloading pockets-0.9.1-py2.py3-none-any.whl (26 kB) Requirement already satisfied: packaging in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from sphinx~=4.4.0->-r docs/requirements.txt (line 6)) (20.9) Requirement already satisfied: imagesize in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from sphinx~=4.4.0->-r docs/requirements.txt (line 6)) (1.3.0) Collecting sphinxcontrib-devhelp Downloading sphinxcontrib_devhelp-1.0.2-py2.py3-none-any.whl (84 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 84.7/84.7 kB 215.0 MB/s eta 0:00:00 Requirement already satisfied: babel>=1.3 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from sphinx~=4.4.0->-r docs/requirements.txt (line 6)) (2.10.1) Requirement already satisfied: snowballstemmer>=1.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from sphinx~=4.4.0->-r docs/requirements.txt (line 6)) (2.2.0) Collecting sphinxcontrib-qthelp Downloading sphinxcontrib_qthelp-1.0.3-py2.py3-none-any.whl (90 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 90.6/90.6 kB 251.8 MB/s eta 0:00:00 Requirement already satisfied: Pygments>=2.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from sphinx~=4.4.0->-r docs/requirements.txt (line 6)) (2.12.0) Collecting sphinxcontrib-applehelp Downloading sphinxcontrib_applehelp-1.0.2-py2.py3-none-any.whl (121 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 121.2/121.2 kB 260.2 MB/s eta 0:00:00 Requirement already satisfied: sphinxcontrib-serializinghtml>=1.1.5 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from sphinx~=4.4.0->-r docs/requirements.txt (line 6)) (1.1.5) Collecting sphinxcontrib-jsmath Downloading sphinxcontrib_jsmath-1.0.1-py2.py3-none-any.whl (5.1 kB) Requirement already satisfied: alabaster<0.8,>=0.7 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from sphinx~=4.4.0->-r docs/requirements.txt (line 6)) (0.7.12) Requirement already satisfied: importlib-metadata>=4.4 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from sphinx~=4.4.0->-r docs/requirements.txt (line 6)) (4.11.3) Requirement already satisfied: Jinja2>=2.3 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from sphinx~=4.4.0->-r docs/requirements.txt (line 6)) (3.0.3) Collecting sphinxcontrib-htmlhelp>=2.0.0 Downloading sphinxcontrib_htmlhelp-2.0.0-py2.py3-none-any.whl (100 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 100.5/100.5 kB 240.6 MB/s eta 0:00:00 Requirement already satisfied: pytz>=2015.7 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from babel>=1.3->sphinx~=4.4.0->-r docs/requirements.txt (line 6)) (2022.1) Requirement already satisfied: zipp>=0.5 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from importlib-metadata>=4.4->sphinx~=4.4.0->-r docs/requirements.txt (line 6)) (3.8.0) Requirement already satisfied: MarkupSafe>=2.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from Jinja2>=2.3->sphinx~=4.4.0->-r docs/requirements.txt (line 6)) (2.1.1) Requirement already satisfied: idna<4,>=2.5 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from requests->plantweb~=1.2.1->-r docs/requirements.txt (line 1)) (3.3) Requirement already satisfied: urllib3<1.27,>=1.21.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from requests->plantweb~=1.2.1->-r docs/requirements.txt (line 1)) (1.26.9) Requirement already satisfied: charset-normalizer~=2.0.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from requests->plantweb~=1.2.1->-r docs/requirements.txt (line 1)) (2.0.12) Requirement already satisfied: certifi>=2017.4.17 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from requests->plantweb~=1.2.1->-r docs/requirements.txt (line 1)) (2022.5.18.1) Requirement already satisfied: pyparsing>=2.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from packaging->sphinx~=4.4.0->-r docs/requirements.txt (line 6)) (3.0.9) Installing collected packages: sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, pockets, docutils, sphinxcontrib-napoleon, sphinx, plantweb, sphinxext.remoteliteralinclude, sphinxcontrib-programoutput, sphinx-rtd-theme, sphinx-copybutton Attempting uninstall: docutils Found existing installation: docutils 0.17.1 Uninstalling docutils-0.17.1: Successfully uninstalled docutils-0.17.1 Attempting uninstall: sphinx Found existing installation: Sphinx 1.8.6 Uninstalling Sphinx-1.8.6: Successfully uninstalled Sphinx-1.8.6 Attempting uninstall: sphinx-rtd-theme Found existing installation: sphinx-rtd-theme 0.4.3 Uninstalling sphinx-rtd-theme-0.4.3: Successfully uninstalled sphinx-rtd-theme-0.4.3 Successfully installed docutils-0.16 plantweb-1.2.1 pockets-0.9.1 sphinx-4.4.0 sphinx-copybutton-0.3.3 sphinx-rtd-theme-0.5.2 sphinxcontrib-applehelp-1.0.2 sphinxcontrib-devhelp-1.0.2 sphinxcontrib-htmlhelp-2.0.0 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-napoleon-0.7 sphinxcontrib-programoutput-0.17 sphinxcontrib-qthelp-1.0.3 sphinxext.remoteliteralinclude-0.3.0 [rtd-command-info] start-time: 2022-05-20T22:59:29.402723Z, end-time: 2022-05-20T22:59:30.562272Z, duration: 1, exit-code: 0 python ./setup.py install --force running install running bdist_egg running egg_info creating emodpy_malaria.egg-info writing emodpy_malaria.egg-info/PKG-INFO writing dependency_links to emodpy_malaria.egg-info/dependency_links.txt writing requirements to emodpy_malaria.egg-info/requires.txt writing top-level names to emodpy_malaria.egg-info/top_level.txt writing manifest file 'emodpy_malaria.egg-info/SOURCES.txt' reading manifest file 'emodpy_malaria.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'emodpy_malaria.egg-info/SOURCES.txt' installing library code to build/bdist.linux-x86_64/egg running install_lib running build_py creating build creating build/lib creating build/lib/emodpy_malaria copying emodpy_malaria/malaria_vector_species_params.py -> build/lib/emodpy_malaria copying emodpy_malaria/vector_config.py -> build/lib/emodpy_malaria copying emodpy_malaria/malaria_config.py -> build/lib/emodpy_malaria copying emodpy_malaria/__init__.py -> build/lib/emodpy_malaria creating build/lib/tests copying tests/add_itn.py -> build/lib/tests copying tests/__init__.py -> build/lib/tests creating build/lib/emodpy_malaria/demographics copying emodpy_malaria/demographics/MalariaDemographics.py -> build/lib/emodpy_malaria/demographics copying emodpy_malaria/demographics/__init__.py -> build/lib/emodpy_malaria/demographics creating build/lib/emodpy_malaria/reporters copying emodpy_malaria/reporters/builtin.py -> build/lib/emodpy_malaria/reporters copying emodpy_malaria/reporters/__init__.py -> build/lib/emodpy_malaria/reporters creating build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/common.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/adherentdrug.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/sugartrap.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/scale_larval_habitats.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/drug.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/usage_dependent_bednet.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/vaccine.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/larvicide.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/outbreak.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/outdoorrestkill.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/irs.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/community_health_worker.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/__init__.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/inputeir.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/mosquitorelease.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/treatment_seeking.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/spacespraying.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/diag_survey.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/drug_campaign.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/ivermectin.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/bednet.py -> build/lib/emodpy_malaria/interventions creating build/lib/tests/unittests copying tests/unittests/test_treatment_seeking.py -> build/lib/tests/unittests copying tests/unittests/test_malaria_reporters.py -> build/lib/tests/unittests copying tests/unittests/test_malaria_config.py -> build/lib/tests/unittests copying tests/unittests/manifest.py -> build/lib/tests/unittests copying tests/unittests/test_import.py -> build/lib/tests/unittests copying tests/unittests/get_latest_schema.py -> build/lib/tests/unittests copying tests/unittests/test_malaria_interventions.py -> build/lib/tests/unittests copying tests/unittests/test_demog.py -> build/lib/tests/unittests copying tests/unittests/test_malaria_interventions_as_files.py -> build/lib/tests/unittests copying tests/unittests/__init__.py -> build/lib/tests/unittests copying tests/unittests/schema_path_file.py -> build/lib/tests/unittests copying tests/unittests/test_campaign_common.py -> build/lib/tests/unittests copying tests/unittests/get_unittest_coverage.py -> build/lib/tests/unittests copying emodpy_malaria/malaria_drug_params.csv -> build/lib/emodpy_malaria creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/egg creating build/bdist.linux-x86_64/egg/emodpy_malaria copying build/lib/emodpy_malaria/malaria_vector_species_params.py -> build/bdist.linux-x86_64/egg/emodpy_malaria creating build/bdist.linux-x86_64/egg/emodpy_malaria/demographics copying build/lib/emodpy_malaria/demographics/MalariaDemographics.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/demographics copying build/lib/emodpy_malaria/demographics/__init__.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/demographics copying build/lib/emodpy_malaria/vector_config.py -> build/bdist.linux-x86_64/egg/emodpy_malaria copying build/lib/emodpy_malaria/malaria_config.py -> build/bdist.linux-x86_64/egg/emodpy_malaria creating build/bdist.linux-x86_64/egg/emodpy_malaria/reporters copying build/lib/emodpy_malaria/reporters/builtin.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/reporters copying build/lib/emodpy_malaria/reporters/__init__.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/reporters copying build/lib/emodpy_malaria/malaria_drug_params.csv -> build/bdist.linux-x86_64/egg/emodpy_malaria copying build/lib/emodpy_malaria/__init__.py -> build/bdist.linux-x86_64/egg/emodpy_malaria creating build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/common.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/adherentdrug.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/sugartrap.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/scale_larval_habitats.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/drug.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/usage_dependent_bednet.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/vaccine.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/larvicide.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/outbreak.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/outdoorrestkill.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/irs.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/community_health_worker.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/__init__.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/inputeir.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/mosquitorelease.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/treatment_seeking.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/spacespraying.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/diag_survey.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/drug_campaign.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/ivermectin.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/bednet.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions creating build/bdist.linux-x86_64/egg/tests copying build/lib/tests/add_itn.py -> build/bdist.linux-x86_64/egg/tests copying build/lib/tests/__init__.py -> build/bdist.linux-x86_64/egg/tests creating build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_treatment_seeking.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_malaria_reporters.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_malaria_config.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/manifest.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_import.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/get_latest_schema.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_malaria_interventions.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_demog.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_malaria_interventions_as_files.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/__init__.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/schema_path_file.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_campaign_common.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/get_unittest_coverage.py -> build/bdist.linux-x86_64/egg/tests/unittests byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/malaria_vector_species_params.py to malaria_vector_species_params.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/demographics/MalariaDemographics.py to MalariaDemographics.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/demographics/__init__.py to __init__.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/vector_config.py to vector_config.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/malaria_config.py to malaria_config.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/reporters/builtin.py to builtin.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/reporters/__init__.py to __init__.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/__init__.py to __init__.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/common.py to common.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/adherentdrug.py to adherentdrug.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/sugartrap.py to sugartrap.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/scale_larval_habitats.py to scale_larval_habitats.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/drug.py to drug.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/usage_dependent_bednet.py to usage_dependent_bednet.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/vaccine.py to vaccine.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/larvicide.py to larvicide.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/outbreak.py to outbreak.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/outdoorrestkill.py to outdoorrestkill.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/irs.py to irs.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/community_health_worker.py to community_health_worker.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/__init__.py to __init__.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/inputeir.py to inputeir.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/mosquitorelease.py to mosquitorelease.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/treatment_seeking.py to treatment_seeking.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/spacespraying.py to spacespraying.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/diag_survey.py to diag_survey.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/drug_campaign.py to drug_campaign.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/ivermectin.py to ivermectin.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/bednet.py to bednet.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/add_itn.py to add_itn.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/__init__.py to __init__.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_treatment_seeking.py to test_treatment_seeking.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_malaria_reporters.py to test_malaria_reporters.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_malaria_config.py to test_malaria_config.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/manifest.py to manifest.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_import.py to test_import.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/get_latest_schema.py to get_latest_schema.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_malaria_interventions.py to test_malaria_interventions.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_demog.py to test_demog.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_malaria_interventions_as_files.py to test_malaria_interventions_as_files.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/__init__.py to __init__.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/schema_path_file.py to schema_path_file.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_campaign_common.py to test_campaign_common.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/get_unittest_coverage.py to get_unittest_coverage.cpython-38.pyc creating build/bdist.linux-x86_64/egg/EGG-INFO copying emodpy_malaria.egg-info/PKG-INFO -> build/bdist.linux-x86_64/egg/EGG-INFO copying emodpy_malaria.egg-info/SOURCES.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying emodpy_malaria.egg-info/dependency_links.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying emodpy_malaria.egg-info/requires.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying emodpy_malaria.egg-info/top_level.txt -> build/bdist.linux-x86_64/egg/EGG-INFO zip_safe flag not set; analyzing archive contents... emodpy_malaria.__pycache__.malaria_config.cpython-38: module references __file__ tests.unittests.__pycache__.manifest.cpython-38: module references __file__ tests.unittests.__pycache__.schema_path_file.cpython-38: module references __file__ tests.unittests.__pycache__.test_campaign_common.cpython-38: module references __file__ tests.unittests.__pycache__.test_demog.cpython-38: module references __file__ tests.unittests.__pycache__.test_malaria_config.cpython-38: module references __file__ tests.unittests.__pycache__.test_malaria_interventions.cpython-38: module references __file__ tests.unittests.__pycache__.test_malaria_reporters.cpython-38: module references __file__ tests.unittests.__pycache__.test_treatment_seeking.cpython-38: module references __file__ creating dist creating 'dist/emodpy_malaria-2.1.10-py3.8.egg' and adding 'build/bdist.linux-x86_64/egg' to it removing 'build/bdist.linux-x86_64/egg' (and everything under it) Processing emodpy_malaria-2.1.10-py3.8.egg creating /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages/emodpy_malaria-2.1.10-py3.8.egg Extracting emodpy_malaria-2.1.10-py3.8.egg to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Adding emodpy-malaria 2.1.10 to easy-install.pth file Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages/emodpy_malaria-2.1.10-py3.8.egg Processing dependencies for emodpy-malaria==2.1.10 Searching for emod-malaria==0.0.15 Best match: emod-malaria 0.0.15 Adding emod-malaria 0.0.15 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for emodpy==1.18.2 Best match: emodpy 1.18.2 Adding emodpy 1.18.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for astor==0.8.1 Best match: astor 0.8.1 Adding astor 0.8.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for emod-api==1.25.1 Best match: emod-api 1.25.1 Adding emod-api 1.25.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for idmtools==1.6.6 Best match: idmtools 1.6.6 Adding idmtools 1.6.6 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for bs4==0.0.1 Best match: bs4 0.0.1 Adding bs4 0.0.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for astunparse==1.6.3 Best match: astunparse 1.6.3 Adding astunparse 1.6.3 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for idmtools-platform-comps==1.6.6 Best match: idmtools-platform-comps 1.6.6 Adding idmtools-platform-comps 1.6.6 to easy-install.pth file Installing comps-cli script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for idmtools-models==1.6.6 Best match: idmtools-models 1.6.6 Adding idmtools-models 1.6.6 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for keyring==23.5.0 Best match: keyring 23.5.0 Adding keyring 23.5.0 to easy-install.pth file Installing keyring script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for click==7.1.2 Best match: click 7.1.2 Adding click 7.1.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for matplotlib==3.5.2 Best match: matplotlib 3.5.2 Adding matplotlib 3.5.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for sklearn==0.0 Best match: sklearn 0.0 Adding sklearn 0.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for numpy==1.22.4 Best match: numpy 1.22.4 Adding numpy 1.22.4 to easy-install.pth file Installing f2py script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Installing f2py3 script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Installing f2py3.8 script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for scipy==1.8.1 Best match: scipy 1.8.1 Adding scipy 1.8.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for pandas==1.1.5 Best match: pandas 1.1.5 Adding pandas 1.1.5 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for Shapely==1.8.2 Best match: Shapely 1.8.2 Adding Shapely 1.8.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for graphviz==0.20 Best match: graphviz 0.20 Adding graphviz 0.20 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for geographiclib==2.0 Best match: geographiclib 2.0 Adding geographiclib 2.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for lz4==4.0.0 Best match: lz4 4.0.0 Adding lz4 4.0.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for parse==1.19.0 Best match: parse 1.19.0 Adding parse 1.19.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for pyproj==3.3.1 Best match: pyproj 3.3.1 Adding pyproj 3.3.1 to easy-install.pth file Installing pyproj script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for prodict==0.8.18 Best match: prodict 0.8.18 Adding prodict 0.8.18 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for PyYAML==5.4.1 Best match: PyYAML 5.4.1 Adding PyYAML 5.4.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for tabulate==0.8.9 Best match: tabulate 0.8.9 Adding tabulate 0.8.9 to easy-install.pth file Installing tabulate script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for pluggy==0.13.1 Best match: pluggy 0.13.1 Adding pluggy 0.13.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for pipreqs==0.4.11 Best match: pipreqs 0.4.11 Adding pipreqs 0.4.11 to easy-install.pth file Installing pipreqs script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for coloredlogs==15.0.1 Best match: coloredlogs 15.0.1 Adding coloredlogs 15.0.1 to easy-install.pth file Installing coloredlogs script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for diskcache==5.2.1 Best match: diskcache 5.2.1 Adding diskcache 5.2.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for pygit2==1.5.0 Best match: pygit2 1.5.0 Adding pygit2 1.5.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for backoff==1.10.0 Best match: backoff 1.10.0 Adding backoff 1.10.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for tqdm==4.64.0 Best match: tqdm 4.64.0 Adding tqdm 4.64.0 to easy-install.pth file Installing tqdm script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for more-itertools==8.8.0 Best match: more-itertools 8.8.0 Adding more-itertools 8.8.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for packaging==20.9 Best match: packaging 20.9 Adding packaging 20.9 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for beautifulsoup4==4.11.1 Best match: beautifulsoup4 4.11.1 Adding beautifulsoup4 4.11.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for wheel==0.37.1 Best match: wheel 0.37.1 Adding wheel 0.37.1 to easy-install.pth file Installing wheel script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for six==1.16.0 Best match: six 1.16.0 Adding six 1.16.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for pytest-lazy-fixture==0.6.3 Best match: pytest-lazy-fixture 0.6.3 Adding pytest-lazy-fixture 0.6.3 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for Jinja2==3.0.3 Best match: Jinja2 3.0.3 Adding Jinja2 3.0.3 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for natsort==8.1.0 Best match: natsort 8.1.0 Adding natsort 8.1.0 to easy-install.pth file Installing natsort script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for pyCOMPS==2.6.0 Best match: pyCOMPS 2.6.0 Adding pyCOMPS 2.6.0 to easy-install.pth file Installing comps-util script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for SecretStorage==3.3.2 Best match: SecretStorage 3.3.2 Adding SecretStorage 3.3.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for importlib-metadata==4.11.3 Best match: importlib-metadata 4.11.3 Adding importlib-metadata 4.11.3 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for jeepney==0.8.0 Best match: jeepney 0.8.0 Adding jeepney 0.8.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for python-dateutil==2.8.2 Best match: python-dateutil 2.8.2 Adding python-dateutil 2.8.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for pyparsing==3.0.9 Best match: pyparsing 3.0.9 Adding pyparsing 3.0.9 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for cycler==0.11.0 Best match: cycler 0.11.0 Adding cycler 0.11.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for fonttools==4.33.3 Best match: fonttools 4.33.3 Adding fonttools 4.33.3 to easy-install.pth file Installing fonttools script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Installing pyftmerge script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Installing pyftsubset script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Installing ttx script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for kiwisolver==1.4.2 Best match: kiwisolver 1.4.2 Adding kiwisolver 1.4.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for Pillow==9.1.1 Best match: Pillow 9.1.1 Adding Pillow 9.1.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for scikit-learn==1.1.1 Best match: scikit-learn 1.1.1 Adding scikit-learn 1.1.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for pytz==2022.1 Best match: pytz 2022.1 Adding pytz 2022.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for certifi==2022.5.18.1 Best match: certifi 2022.5.18.1 Adding certifi 2022.5.18.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for docopt==0.6.2 Best match: docopt 0.6.2 Adding docopt 0.6.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for yarg==0.1.9 Best match: yarg 0.1.9 Adding yarg 0.1.9 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for humanfriendly==10.0 Best match: humanfriendly 10.0 Adding humanfriendly 10.0 to easy-install.pth file Installing humanfriendly script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for cached-property==1.5.2 Best match: cached-property 1.5.2 Adding cached-property 1.5.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for cffi==1.15.0 Best match: cffi 1.15.0 Adding cffi 1.15.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for soupsieve==2.3.2.post1 Best match: soupsieve 2.3.2.post1 Adding soupsieve 2.3.2.post1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for pytest==7.1.2 Best match: pytest 7.1.2 Adding pytest 7.1.2 to easy-install.pth file Installing py.test script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Installing pytest script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for MarkupSafe==2.1.1 Best match: MarkupSafe 2.1.1 Adding MarkupSafe 2.1.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for future==0.18.2 Best match: future 0.18.2 Adding future 0.18.2 to easy-install.pth file Installing futurize script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Installing pasteurize script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for requests==2.27.1 Best match: requests 2.27.1 Adding requests 2.27.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for xdg==5.1.1 Best match: xdg 5.1.1 Adding xdg 5.1.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for cryptography==37.0.2 Best match: cryptography 37.0.2 Adding cryptography 37.0.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for zipp==3.8.0 Best match: zipp 3.8.0 Adding zipp 3.8.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for joblib==1.1.0 Best match: joblib 1.1.0 Adding joblib 1.1.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for threadpoolctl==3.1.0 Best match: threadpoolctl 3.1.0 Adding threadpoolctl 3.1.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for pycparser==2.21 Best match: pycparser 2.21 Adding pycparser 2.21 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for py==1.11.0 Best match: py 1.11.0 Adding py 1.11.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for iniconfig==1.1.1 Best match: iniconfig 1.1.1 Adding iniconfig 1.1.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for attrs==21.4.0 Best match: attrs 21.4.0 Adding attrs 21.4.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for tomli==2.0.1 Best match: tomli 2.0.1 Adding tomli 2.0.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for charset-normalizer==2.0.12 Best match: charset-normalizer 2.0.12 Adding charset-normalizer 2.0.12 to easy-install.pth file Installing normalizer script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for urllib3==1.26.9 Best match: urllib3 1.26.9 Adding urllib3 1.26.9 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for idna==3.3 Best match: idna 3.3 Adding idna 3.3 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Finished processing dependencies for emodpy-malaria==2.1.10 [rtd-command-info] start-time: 2022-05-20T22:59:33.105210Z, end-time: 2022-05-20T22:59:33.168876Z, duration: 0, exit-code: 0 cat docs/conf.py # -*- coding: utf-8 -*- # # Sphinx Demo docs build configuration file, created by # sphinx-quickstart on Fri Aug 26 16:52:16 2016. # # This file is execfile()d with the current directory set to its # containing dir. # # Note that not all possible configuration values are present in this # autogenerated file. # # All configuration values have a default; values that are commented out # serve to show the default. # If extensions (or modules to document with autodoc) are in another directory, # add these directories to sys.path here. If the directory is relative to the # docs root, use os.path.abspath to make it absolute, like shown here. # import os import subprocess import sys import sphinx_rtd_theme import configparser from datetime import datetime from urllib.request import urlretrieve if sys.platform in ["linux", "darwin"]: subprocess.check_output(["make", "generate-api"], cwd=os.path.dirname(os.path.abspath(__file__))) else: subprocess.check_output(["make.bat", "generate-api"], cwd=os.path.dirname(os.path.abspath(__file__))) # Rename "emodpy-malaria" to "API reference" filename = 'modules.rst' # This must match the Makefile with open(filename) as f: # Read existing file lines = f.readlines() lines[0] = "API reference\n" # Blast away the existing heading and replace with this lines[1] = "=============\n" # Ensure the heading is the right length with open(filename, "w") as f: # Write new file f.writelines(lines) # -- General configuration ------------------------------------------------ tags.add('emodpymalaria') # If your docs needs a minimal Sphinx version, state it here. # # needs_sphinx = '1.0' # Add any Sphinx extension module names here, as strings. They can be # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom # ones. extensions = [ 'sphinx.ext.mathjax', 'sphinx.ext.githubpages', 'sphinx.ext.autodoc', 'sphinxcontrib.napoleon', 'sphinx.ext.todo', 'plantweb.directive', 'sphinxcontrib.programoutput', 'sphinx_copybutton', 'sphinx.ext.intersphinx', 'sphinxext.remoteliteralinclude' ] plantuml = 'plantweb' autodoc_default_options = { 'member-order': 'bysource', 'members': None, 'exclude-members': '__all__' } autodoc_mock_imports = [] napoleon_google_docstring = True # napoleon_numpy_docstring = True # Add any paths that contain templates here, relative to this directory. templates_path = ['_templates'] # The suffix(es) of source filenames. # You can specify multiple suffix as a list of string: # # source_suffix = ['.rst', '.md'] source_suffix = '.rst' # The encoding of source files. # # source_encoding = 'utf-8-sig' # The master toctree document. master_doc = 'index' # General information about the project. project = u'emodpy-malaria' copyright = f'1999 - {datetime.today().year}, Bill & Melinda Gates Foundation. All rights reserved.' author = u'Institute for Disease Modeling' # The version info for the project you're documenting, acts as replacement for # |version| and |release|, also used in various other places throughout the # built documents. # # The short X.Y version. #current_path = os.path.dirname(__file__) #version_path = os.path.join(current_path, '..', '.bumpversion.cfg') #config = configparser.ConfigParser() #config.read(version_path) #version = config['bumpversion']['current_version'] # The full version, including alpha/beta/rc tags. # release = u'1.0' # The language for content autogenerated by Sphinx. Refer to docs # for a list of supported languages. # # This is also used if you do content translation via gettext catalogs. # Usually you set "language" from the command line for these cases. language = None # There are two options for replacing |today|: either, you set today to some # non-false value, then it is used: # # today = '' # # Else, today_fmt is used as the format for a strftime call. # # today_fmt = '%B %d, %Y' # List of patterns, relative to source directory, that match files and # directories to ignore when looking for source files. # This patterns also effect to html_static_path and html_extra_path exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store'] # The reST default role (used for this markup: `text`) to use for all # documents. # # default_role = None # If true, '()' will be appended to :func: etc. cross-reference text. # # add_function_parentheses = True # If true, the current module name will be prepended to all description # unit titles (such as .. function::). # # add_module_names = True # If true, sectionauthor and moduleauthor directives will be shown in the # output. They are ignored by default. # # show_authors = False # The name of the Pygments (syntax highlighting) style to use. pygments_style = 'sphinx' # A list of ignored prefixes for module index sorting. # modindex_common_prefix = [] # If true, keep warnings as "system message" paragraphs in the built documents. # keep_warnings = False # If true, `todo` and `todoList` produce output, else they produce nothing. todo_include_todos = False # RST epilog is added to the end of every topic. Useful for replace # directives to use across the docset. rst_epilog = "\n.. include:: /variables.txt" # -- Options for HTML output ---------------------------------------------- # The theme to use for HTML and HTML Help pages. See the docs for # a list of builtin themes. # html_theme = 'sphinx_rtd_theme' # Theme options are theme-specific and customize the look and feel of a theme # further. For a list of options available for each theme, see the # docs. # # # html_theme_options = { # } # Add any paths that contain custom themes here, relative to this directory. html_theme_path = [sphinx_rtd_theme.get_html_theme_path()] # The name for this set of Sphinx documents. # " v docs" by default. # # html_title = u'Sphinx Demo v1.0' # A shorter title for the navigation bar. Default is the same as html_title. # # html_short_title = None # The name of an image file (relative to this directory) to place at the top # of the sidebar. # html_logo = "images/IDM_white.png" # The name of an image file (relative to this directory) to use as a favicon of # the docs. This file should be a Windows icon file (.ico) being 16x16 or 32x32 # pixels large. # html_favicon = "images/favicon.ico" # Add any paths that contain custom static files (such as style sheets) here, # relative to this directory. They are copied after the builtin static files, # so a file named "default.css" will overwrite the builtin "default.css". html_static_path = ['_static'] html_context = { 'css_files': [ '_static/theme_overrides.css', '_static/copy_button.css' ] } html_js_files = ['show_block_by_os.js'] # Add any extra paths that contain custom files (such as robots.txt or # .htaccess) here, relative to this directory. These files are copied # directly to the root of the docs. # # html_extra_path = [] # If not None, a 'Last updated on:' timestamp is inserted at every page # bottom, using the given strftime format. # The empty string is equivalent to '%b %d, %Y'. # # html_last_updated_fmt = None # If true, SmartyPants will be used to convert quotes and dashes to # typographically correct entities. # # html_use_smartypants = True # Custom sidebar templates, maps document names to template names. # # html_sidebars = {} # Additional templates that should be rendered to pages, maps page names to # template names. # # html_additional_pages = {} # If false, no module index is generated. # # html_domain_indices = True # If false, no index is generated. # # html_use_index = True # If true, the index is split into individual pages for each letter. # # html_split_index = False # If true, links to the reST sources are added to the pages. # html_show_sourcelink = False # If true, "Created using Sphinx" is shown in the HTML footer. Default is True. # html_show_sphinx = False # If true, "(C) Copyright ..." is shown in the HTML footer. Default is True. # # html_show_copyright = True # If true, an OpenSearch description file will be output, and all pages will # contain a tag referring to it. The value of this option must be the # base URL from which the finished HTML is served. # html_use_opensearch = 'www.idmod.org/docs/' # This is the file name suffix for HTML files (e.g. ".xhtml"). # html_file_suffix = None # Language to be used for generating the HTML full-text search index. # Sphinx supports the following languages: # 'da', 'de', 'en', 'es', 'fi', 'fr', 'hu', 'it', 'ja' # 'nl', 'no', 'pt', 'ro', 'ru', 'sv', 'tr', 'zh' # # html_search_language = 'en' # A dictionary with options for the search language support, empty by default. # 'ja' uses this config value. # 'zh' user can custom change `jieba` dictionary path. # # html_search_options = {'type': 'default'} # The name of a javascript file (relative to the configuration directory) that # implements a search results scorer. If empty, the default will be used. # # html_search_scorer = 'scorer.js' # Output file base name for HTML help builder. htmlhelp_basename = 'emodpy-malaria' # -- Options for LaTeX output --------------------------------------------- latex_elements = { # The paper size ('letterpaper' or 'a4paper'). # # 'papersize': 'letterpaper', # The font size ('10pt', '11pt' or '12pt'). # # 'pointsize': '10pt', # Additional stuff for the LaTeX preamble. # # 'preamble': '', # Latex figure (float) alignment # # 'figure_align': 'htbp', } # Grouping the document tree into LaTeX files. List of tuples # (source start file, target name, title, # author, documentclass [howto, manual, or own class]). latex_documents = [ (master_doc, 'emodpy-malaria-docs.tex', u'emodpy-malaria', u'Institute for Disease Modeling', 'manual'), ] # The name of an image file (relative to this directory) to place at the top of # the title page. # # latex_logo = None # For "manual" documents, if this is true, then toplevel headings are parts, # not chapters. # # latex_use_parts = False # If true, show page references after internal links. # # latex_show_pagerefs = False # If true, show URL addresses after external links. # # latex_show_urls = False # Documents to append as an appendix to all manuals. # # latex_appendices = [] # It false, will not define \strong, \code, itleref, \crossref ... but only # \sphinxstrong, ..., \sphinxtitleref, ... To help avoid clash with user added # packages. # # latex_keep_old_macro_names = True # If false, no module index is generated. # # latex_domain_indices = True # -- Options for manual page output --------------------------------------- # One entry per manual page. List of tuples # (source start file, name, description, authors, manual section). man_pages = [ (master_doc, 'emodpy-malaria-docs', u'emodpy-malaria', [author], 1) ] # If true, show URL addresses after external links. # man_show_urls = True # -- Options for Texinfo output ------------------------------------------- # Grouping the document tree into Texinfo files. List of tuples # (source start file, target name, title, author, # dir menu entry, description, category) texinfo_documents = [ (master_doc, 'emodpy-malaria-docs', u'emodpy-malaria', author, 'Institute for Disease Modeling', 'How to use emodpy for malaria simulations.', 'Miscellaneous'), ] # Documents to append as an appendix to all manuals. # # texinfo_appendices = [] # If false, no module index is generated. # # texinfo_domain_indices = True # How to display URL addresses: 'footnote', 'no', or 'inline'. # # texinfo_show_urls = 'footnote' # If true, do not generate a @detailmenu in the "Top" node's menu. # # texinfo_no_detailmenu = False # Example configuration for intersphinx: refer to the Python standard library. intersphinx_mapping = {'python': ('https://docs.python.org/3', None), 'emod_api': ('https://docs.idmod.org/projects/emod-api/en/latest/', None), 'emodpy': ('https://docs.idmod.org/projects/emodpy/en/latest/', None), 'idmtools': ('https://docs.idmod.org/projects/idmtools/en/latest/', None), 'emod-malaria': ('https://docs.idmod.org/projects/emod-malaria/en/latest/', None), 'pycomps': ('https://docs.idmod.org/projects/pycomps/en/latest/', None) } ########################################################################### # auto-created readthedocs.org specific configuration # ########################################################################### # # The following code was added during an automated build on readthedocs.org # It is auto created and injected for every build. The result is based on the # conf.py.tmpl file found in the readthedocs.org codebase: # https://github.com/rtfd/readthedocs.org/blob/main/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl # # Note: this file shouldn't rely on extra dependencies. import importlib import sys import os.path # Borrowed from six. PY3 = sys.version_info[0] == 3 string_types = str if PY3 else basestring from sphinx import version_info # Get suffix for proper linking to GitHub # This is deprecated in Sphinx 1.3+, # as each page can have its own suffix if globals().get('source_suffix', False): if isinstance(source_suffix, string_types): SUFFIX = source_suffix elif isinstance(source_suffix, (list, tuple)): # Sphinx >= 1.3 supports list/tuple to define multiple suffixes SUFFIX = source_suffix[0] elif isinstance(source_suffix, dict): # Sphinx >= 1.8 supports a mapping dictionary for multiple suffixes SUFFIX = list(source_suffix.keys())[0] # make a ``list()`` for py2/py3 compatibility else: # default to .rst SUFFIX = '.rst' else: SUFFIX = '.rst' # Add RTD Static Path. Add to the end because it overwrites previous files. if not 'html_static_path' in globals(): html_static_path = [] if os.path.exists('_static'): html_static_path.append('_static') # Add RTD Theme only if they aren't overriding it already using_rtd_theme = ( ( 'html_theme' in globals() and html_theme in ['default'] and # Allow people to bail with a hack of having an html_style 'html_style' not in globals() ) or 'html_theme' not in globals() ) if using_rtd_theme: theme = importlib.import_module('sphinx_rtd_theme') html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} if 'html_theme_path' in globals(): html_theme_path.append(theme.get_html_theme_path()) else: html_theme_path = [theme.get_html_theme_path()] if globals().get('websupport2_base_url', False): websupport2_base_url = 'https://readthedocs.com/websupport' websupport2_static_url = 'https://assets.readthedocs.com/' #Add project information to the template context. context = { 'using_theme': using_rtd_theme, 'html_theme': html_theme, 'current_version': "latest", 'version_slug': "latest", 'MEDIA_URL': "https://media.readthedocs.com/media/", 'STATIC_URL': "https://assets.readthedocs.com/", 'PRODUCTION_DOMAIN': "readthedocs.com", 'proxied_static_path': "/_/static/", 'versions': [ ("latest", "/en/latest/"), ("stable", "/en/stable/"), ("v2.1.1", "/en/v2.1.1/"), ("v2.0.2", "/en/v2.0.2/"), ("v2.0.1", "/en/v2.0.1/"), ("v1.20.2", "/en/v1.20.2/"), ("v1.1.19", "/en/v1.1.19/"), ("v1.1.0", "/en/v1.1.0/"), ("v1.0.10", "/en/v1.0.10/"), ("v1.0.9", "/en/v1.0.9/"), ("v1.0.2", "/en/v1.0.2/"), ("v0.0.61", "/en/v0.0.61/"), ("v0.0.50", "/en/v0.0.50/"), ("0.0.50", "/en/0.0.50/"), ("v0.0.48", "/en/v0.0.48/"), ("v0.0.45", "/en/v0.0.45/"), ("v0.0.44", "/en/v0.0.44/"), ("v0.0.29", "/en/v0.0.29/"), ("v0.0.18", "/en/v0.0.18/"), ], 'downloads': [ ("pdf", "//docs.idmod.org/_/downloads/emodpy-malaria/en/latest/pdf/"), ("html", "//docs.idmod.org/_/downloads/emodpy-malaria/en/latest/htmlzip/"), ], 'subprojects': [ ], 'slug': 'institute-for-disease-modeling-emodpy-malaria', 'name': u'emodpy-malaria', 'rtd_language': u'en', 'programming_language': u'words', 'canonical_url': 'https://docs.idmod.org/projects/emodpy-malaria/en/latest/', 'analytics_code': 'UA-87656833-3', 'single_version': False, 'conf_py_path': '/docs/', 'api_host': 'https://readthedocs.com', 'github_user': 'InstituteforDiseaseModeling', 'proxied_api_host': '/_', 'github_repo': 'emodpy-malaria', 'github_version': 'main', 'display_github': True, 'bitbucket_user': 'None', 'bitbucket_repo': 'None', 'bitbucket_version': 'main', 'display_bitbucket': False, 'gitlab_user': 'None', 'gitlab_repo': 'None', 'gitlab_version': 'main', 'display_gitlab': False, 'READTHEDOCS': True, 'using_theme': (html_theme == "default"), 'new_theme': (html_theme == "sphinx_rtd_theme"), 'source_suffix': SUFFIX, 'ad_free': False, 'docsearch_disabled': False, 'user_analytics_code': 'UA-87656833-3', 'global_analytics_code': 'UA-17997319-2', 'commit': '91b51e17', } # For sphinx >=1.8 we can use html_baseurl to set the canonical URL. # https://www.sphinx-doc.org/en/master/usage/configuration.html#confval-html_baseurl if version_info >= (1, 8): if not globals().get('html_baseurl'): html_baseurl = context['canonical_url'] context['canonical_url'] = None if 'html_context' in globals(): html_context.update(context) else: html_context = context # Add custom RTD extension if 'extensions' in globals(): # Insert at the beginning because it can interfere # with other extensions. # See https://github.com/rtfd/readthedocs.org/pull/4054 extensions.insert(0, "readthedocs_ext.readthedocs") else: extensions = ["readthedocs_ext.readthedocs"] # Add External version warning banner to the external version documentation if 'branch' == 'external': extensions.insert(1, "readthedocs_ext.external_version_warning") readthedocs_vcs_url = 'None' readthedocs_build_url = 'https://readthedocs.com/projects/institute-for-disease-modeling-emodpy-malaria/builds/955010/' project_language = 'en' # User's Sphinx configurations language_user = globals().get('language', None) latex_engine_user = globals().get('latex_engine', None) latex_elements_user = globals().get('latex_elements', None) # Remove this once xindy gets installed in Docker image and XINDYOPS # env variable is supported # https://github.com/rtfd/readthedocs-docker-images/pull/98 latex_use_xindy = False chinese = any([ language_user in ('zh_CN', 'zh_TW'), project_language in ('zh_CN', 'zh_TW'), ]) japanese = any([ language_user == 'ja', project_language == 'ja', ]) if chinese: latex_engine = latex_engine_user or 'xelatex' latex_elements_rtd = { 'preamble': '\\usepackage[UTF8]{ctex}\n', } latex_elements = latex_elements_user or latex_elements_rtd elif japanese: latex_engine = latex_engine_user or 'platex' # Make sure our build directory is always excluded exclude_patterns = globals().get('exclude_patterns', []) exclude_patterns.extend(['_build']) [rtd-command-info] start-time: 2022-05-20T22:59:33.374670Z, end-time: 2022-05-20T22:59:41.737992Z, duration: 8, exit-code: 0 python -m sphinx -T -E -W --keep-going -b html -d _build/doctrees -D language=en . _build/html Running Sphinx v4.4.0 loading translations [en]... done making output directory... done loading intersphinx inventory from https://docs.python.org/3/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emod-api/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emodpy/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/idmtools/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emod-malaria/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/pycomps/en/latest/objects.inv... building [mo]: targets for 0 po files that are out of date building [html]: targets for 34 source files that are out of date updating environment: [new config] 34 added, 0 changed, 0 removed reading sources... [ 2%] emodpy_malaria reading sources... [ 5%] emodpy_malaria.demographics reading sources... [ 8%] emodpy_malaria.demographics.MalariaDemographics reading sources... [ 11%] emodpy_malaria.interventions reading sources... [ 14%] emodpy_malaria.interventions.adherentdrug reading sources... [ 17%] emodpy_malaria.interventions.bednet reading sources... [ 20%] emodpy_malaria.interventions.common reading sources... [ 23%] emodpy_malaria.interventions.community_health_worker reading sources... [ 26%] emodpy_malaria.interventions.diag_survey reading sources... [ 29%] emodpy_malaria.interventions.drug reading sources... [ 32%] emodpy_malaria.interventions.drug_campaign reading sources... [ 35%] emodpy_malaria.interventions.inputeir reading sources... [ 38%] emodpy_malaria.interventions.irs reading sources... [ 41%] emodpy_malaria.interventions.ivermectin reading sources... [ 44%] emodpy_malaria.interventions.larvicide reading sources... 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[ 23%] emodpy_malaria.interventions.community_health_worker writing output... [ 26%] emodpy_malaria.interventions.diag_survey writing output... [ 29%] emodpy_malaria.interventions.drug writing output... [ 32%] emodpy_malaria.interventions.drug_campaign writing output... [ 35%] emodpy_malaria.interventions.inputeir writing output... [ 38%] emodpy_malaria.interventions.irs writing output... [ 41%] emodpy_malaria.interventions.ivermectin writing output... [ 44%] emodpy_malaria.interventions.larvicide writing output... [ 47%] emodpy_malaria.interventions.mosquitorelease writing output... [ 50%] emodpy_malaria.interventions.outbreak writing output... [ 52%] emodpy_malaria.interventions.outdoorrestkill writing output... [ 55%] emodpy_malaria.interventions.scale_larval_habitats writing output... [ 58%] emodpy_malaria.interventions.spacespraying writing output... [ 61%] emodpy_malaria.interventions.sugartrap writing output... [ 64%] emodpy_malaria.interventions.treatment_seeking writing output... [ 67%] emodpy_malaria.interventions.usage_dependent_bednet writing output... [ 70%] emodpy_malaria.interventions.vaccine writing output... [ 73%] emodpy_malaria.malaria_config writing output... [ 76%] emodpy_malaria.malaria_vector_species_params writing output... [ 79%] emodpy_malaria.reporters writing output... [ 82%] emodpy_malaria.reporters.builtin writing output... [ 85%] emodpy_malaria.vector_config writing output... [ 88%] faq writing output... [ 91%] index writing output... [ 94%] installation writing output... [ 97%] installation-basic writing output... [100%] modules generating indices... genindex py-modindex done writing additional pages... search opensearch done copying static files... done copying extra files... done dumping search index in English (code: en)... done dumping object inventory... done build succeeded. The HTML pages are in _build/html. Updating searchtools for Read the Docs search... [rtd-command-info] start-time: 2022-05-20T22:59:41.962596Z, end-time: 2022-05-20T22:59:49.701639Z, duration: 7, exit-code: 0 python -m sphinx -T -E -W --keep-going -b readthedocssinglehtmllocalmedia -d _build/doctrees -D language=en . _build/localmedia Running Sphinx v4.4.0 loading translations [en]... done making output directory... done loading intersphinx inventory from https://docs.python.org/3/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emod-api/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emodpy/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/idmtools/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emod-malaria/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/pycomps/en/latest/objects.inv... building [mo]: targets for 0 po files that are out of date building [readthedocssinglehtmllocalmedia]: all documents updating environment: [new config] 34 added, 0 changed, 0 removed reading sources... [ 2%] emodpy_malaria reading sources... [ 5%] emodpy_malaria.demographics reading sources... [ 8%] emodpy_malaria.demographics.MalariaDemographics reading sources... [ 11%] emodpy_malaria.interventions reading sources... [ 14%] emodpy_malaria.interventions.adherentdrug reading sources... [ 17%] emodpy_malaria.interventions.bednet reading sources... [ 20%] emodpy_malaria.interventions.common reading sources... [ 23%] emodpy_malaria.interventions.community_health_worker reading sources... [ 26%] emodpy_malaria.interventions.diag_survey reading sources... [ 29%] emodpy_malaria.interventions.drug reading sources... [ 32%] emodpy_malaria.interventions.drug_campaign reading sources... [ 35%] emodpy_malaria.interventions.inputeir reading sources... [ 38%] emodpy_malaria.interventions.irs reading sources... [ 41%] emodpy_malaria.interventions.ivermectin reading sources... [ 44%] emodpy_malaria.interventions.larvicide reading sources... [ 47%] emodpy_malaria.interventions.mosquitorelease reading sources... [ 50%] emodpy_malaria.interventions.outbreak reading sources... [ 52%] emodpy_malaria.interventions.outdoorrestkill reading sources... [ 55%] emodpy_malaria.interventions.scale_larval_habitats reading sources... [ 58%] emodpy_malaria.interventions.spacespraying reading sources... [ 61%] emodpy_malaria.interventions.sugartrap reading sources... [ 64%] emodpy_malaria.interventions.treatment_seeking reading sources... [ 67%] emodpy_malaria.interventions.usage_dependent_bednet reading sources... [ 70%] emodpy_malaria.interventions.vaccine reading sources... [ 73%] emodpy_malaria.malaria_config reading sources... [ 76%] emodpy_malaria.malaria_vector_species_params reading sources... [ 79%] emodpy_malaria.reporters reading sources... [ 82%] emodpy_malaria.reporters.builtin /!\ WARNING: File 'idmtools.ini' Not Found! 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[100%] modules looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done assembling single document... installation installation-basic modules emodpy_malaria emodpy_malaria.demographics emodpy_malaria.demographics.MalariaDemographics emodpy_malaria.interventions emodpy_malaria.interventions.adherentdrug emodpy_malaria.interventions.bednet emodpy_malaria.interventions.common emodpy_malaria.interventions.community_health_worker emodpy_malaria.interventions.diag_survey emodpy_malaria.interventions.drug emodpy_malaria.interventions.drug_campaign emodpy_malaria.interventions.inputeir emodpy_malaria.interventions.irs emodpy_malaria.interventions.ivermectin emodpy_malaria.interventions.larvicide emodpy_malaria.interventions.mosquitorelease emodpy_malaria.interventions.outbreak emodpy_malaria.interventions.outdoorrestkill emodpy_malaria.interventions.scale_larval_habitats emodpy_malaria.interventions.spacespraying emodpy_malaria.interventions.sugartrap emodpy_malaria.interventions.treatment_seeking emodpy_malaria.interventions.usage_dependent_bednet emodpy_malaria.interventions.vaccine emodpy_malaria.reporters emodpy_malaria.reporters.builtin emodpy_malaria.malaria_config emodpy_malaria.malaria_vector_species_params emodpy_malaria.vector_config faq done writing... done writing additional files... opensearchdone copying static files... done copying extra files... done dumping object inventory... done build succeeded. The HTML page is in _build/localmedia. Updating searchtools for Read the Docs search... [rtd-command-info] start-time: 2022-05-20T22:59:49.932004Z, end-time: 2022-05-20T22:59:52.903140Z, duration: 2, exit-code: 0 python -m sphinx -b latex -D language=en -d _build/doctrees . _build/latex Running Sphinx v4.4.0 loading translations [en]... done making output directory... done loading pickled environment... done building [mo]: targets for 0 po files that are out of date building [latex]: all documents updating environment: 0 added, 1 changed, 0 removed reading sources... [100%] modules looking for now-outdated files... none found pickling environment... done checking consistency... done processing emodpy-malaria-docs.tex... index installation installation-basic modules emodpy_malaria emodpy_malaria.demographics emodpy_malaria.demographics.MalariaDemographics emodpy_malaria.interventions emodpy_malaria.interventions.adherentdrug emodpy_malaria.interventions.bednet emodpy_malaria.interventions.common emodpy_malaria.interventions.community_health_worker emodpy_malaria.interventions.diag_survey emodpy_malaria.interventions.drug emodpy_malaria.interventions.drug_campaign emodpy_malaria.interventions.inputeir emodpy_malaria.interventions.irs emodpy_malaria.interventions.ivermectin emodpy_malaria.interventions.larvicide emodpy_malaria.interventions.mosquitorelease emodpy_malaria.interventions.outbreak emodpy_malaria.interventions.outdoorrestkill emodpy_malaria.interventions.scale_larval_habitats emodpy_malaria.interventions.spacespraying emodpy_malaria.interventions.sugartrap emodpy_malaria.interventions.treatment_seeking emodpy_malaria.interventions.usage_dependent_bednet emodpy_malaria.interventions.vaccine emodpy_malaria.reporters emodpy_malaria.reporters.builtin emodpy_malaria.malaria_config emodpy_malaria.malaria_vector_species_params emodpy_malaria.vector_config faq resolving references... done writing... done copying TeX support files... copying TeX support files... done build succeeded. The LaTeX files are in _build/latex. Run 'make' in that directory to run these through (pdf)latex (use `make latexpdf' here to do that automatically). WARNING: Missing searchtools: /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/checkouts/latest/docs/_build/latex/_static/searchtools.js [rtd-command-info] start-time: 2022-05-20T22:59:53.272253Z, end-time: 2022-05-20T22:59:53.364335Z, duration: 0, exit-code: 0 cat latexmkrc $latex = 'latex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $pdflatex = 'pdflatex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $lualatex = 'lualatex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $xelatex = 'xelatex --no-pdf ' . $ENV{'LATEXOPTS'} . 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(version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) (/usr/share/texmf/tex/latex/tex-gyre/t1qhv.fd)<><><><> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}] [2] [1] [2] [1] [2] Chapter 1. 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For Underfull \hbox (badness 10000) in paragraph at lines 1425--1430 \T1/qtm/m/n/10 ex-am-ple, \T1/txtt/m/n/10 [{"IndividualProperty1":"PropertyValu e1"}, [19] Underfull \hbox (badness 10000) in paragraph at lines 1453--1457 []\T1/txtt/bx/n/10 expire_recent_drugs \T1/qtm/m/n/10 ^^U Adds \T1/txtt/m/n/10 [{"DrugStatus:None"}] \T1/qtm/m/n/10 to \T1/qtm/b/n/10 Prop- Overfull \hbox (1.69395pt too wide) in paragraph at lines 1474--1474 \T1/qtm/m/it/10 timesteps_between_repetitions: Underfull \hbox (badness 10000) in paragraph at lines 1505--1508 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 1515--1518 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [20] Overfull \hbox (72.89397pt too wide) in paragraph at lines 1634--1634 \T1/qtm/m/it/10 ing_drugs_event_name=\TS1/qtm/m/it/10 '\T1/qtm/m/it/10 Received _Campaign_Drugs\TS1/qtm/m/it/10 '\T1/txtt/m/n/10 )| [21] [22] (/usr/share/texlive/texmf-dist/tex/latex/txfonts/ts1txtt.fd) [23] Overfull \hbox (25.23418pt too wide) in paragraph at lines 1863--1863 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.BroadcastEvent] Overfull \hbox (54.63417pt too wide) in paragraph at lines 1863--1863 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.PropertyValueChanger] LaTeX Warning: Hyper reference `emodpy_malaria.interventions.drug_campaign:emod py_malaria.interventions.drug_campaign.add_drug_campaign' on page 24 undefined on input line 1866. 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Underfull \hbox (badness 10000) in paragraph at lines 1898--1902 []\T1/qtm/m/n/10 Add an fMDA (fo-cal mass drug ad-min-is-tra-tion) drug in-ter- ven-tion to your cam-paign. See Overfull \hbox (40.98413pt too wide) in paragraph at lines 1914--1914 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.BroadcastEvent] Overfull \hbox (70.38412pt too wide) in paragraph at lines 1914--1914 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.PropertyValueChanger] LaTeX Warning: Hyper reference `emodpy_malaria.interventions.drug_campaign:emod py_malaria.interventions.drug_campaign.add_drug_campaign' on page 25 undefined on input line 1917. [25] Overfull \hbox (35.73415pt too wide) in paragraph at lines 1931--1931 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.BroadcastEvent] Overfull \hbox (65.13414pt too wide) in paragraph at lines 1931--1931 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.PropertyValueChanger] LaTeX Warning: Hyper reference `emodpy_malaria.interventions.drug_campaign:emod py_malaria.interventions.drug_campaign.add_drug_campaign' on page 26 undefined on input line 1934. [26] [27] Overfull \hbox (26.20386pt too wide) in paragraph at lines 2088--2088 \T1/qtm/m/it/10 killing_decay_time_constant: Overfull \hbox (28.42386pt too wide) in paragraph at lines 2088--2088 \T1/qtm/m/it/10 pelling_decay_time_constant: [28] Overfull \hbox (26.20386pt too wide) in paragraph at lines 2167--2167 \T1/qtm/m/it/10 killing_decay_time_constant: Overfull \hbox (28.42386pt too wide) in paragraph at lines 2167--2167 \T1/qtm/m/it/10 pelling_decay_time_constant: [29] [30] [31] Underfull \hbox (badness 10000) in paragraph at lines 2373--2376 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 2383--2386 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [32] [33] Underfull \hbox (badness 10000) in paragraph at lines 2486--2489 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [34] Underfull \hbox (badness 10000) in paragraph at lines 2576--2579 []\T1/txtt/bx/n/10 habitat_target \T1/qtm/m/n/10 ^^U Pos-si-ble val-ues are: ^^ PTEM-PO-RARY_RAINFALL^^Q, ^^PWA- Underfull \hbox (badness 10000) in paragraph at lines 2576--2579 \T1/qtm/m/n/10 TER_VEGETATION^^Q, ^^PHU-MAN_POPULATION^^Q, ^^PCON-STANT^^Q, ^^P BRACK- Overfull \hbox (54.1938pt too wide) in paragraph at lines 2628--2628 \T1/qtm/m/it/10 timesteps_between_repetitions: Overfull \hbox (1.7138pt too wide) in paragraph at lines 2628--2628 \T1/qtm/m/it/10 leased_infectious: [35] Underfull \hbox (badness 10000) in paragraph at lines 2649--2652 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 7576) in paragraph at lines 2665--2667 []\T1/txtt/bx/n/10 released_number \T1/qtm/m/n/10 ^^U The num-ber of vec-tors t o re-lease, sets Re-leased_Type = [36] Underfull \hbox (badness 10000) in paragraph at lines 2676--2679 []\T1/txtt/bx/n/10 released_infectious \T1/qtm/m/n/10 ^^U The frac-tion of vec- tors re-leased that Underfull \hbox (badness 10000) in paragraph at lines 2676--2679 \T1/qtm/m/n/10 are to be in-fec-tious. One can only use this fea-ture when Overfull \hbox (16.29498pt too wide) in paragraph at lines 2676--2679 \T1/qtm/m/n/10 `Malaria_Model'!='MALARIA_MECHANISTIC_MODEL_WITH_PARASITE_GENETI CS' [37] Underfull \hbox (badness 10000) in paragraph at lines 2767--2770 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 2777--2780 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, Overfull \hbox (12.19392pt too wide) in paragraph at lines 2830--2830 \T1/qtm/m/it/10 timesteps_between_repetitions: Overfull \hbox (14.34396pt too wide) in paragraph at lines 2830--2830 \T1/qtm/m/it/10 ate_nucleotide_sequence_from: Overfull \hbox (79.13393pt too wide) in paragraph at lines 2830--2830 \T1/qtm/m/it/10 code_allele_frequencies_per_genome_location: Overfull \hbox (118.29388pt too wide) in paragraph at lines 2830--2830 \T1/qtm/m/it/10 drug_resistant_allele_frequencies_per_genome_location: [38] Underfull \hbox (badness 10000) in paragraph at lines 2863--2866 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with [39] Underfull \hbox (badness 10000) in paragraph at lines 2873--2876 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [40] Overfull \hbox (17.44391pt too wide) in paragraph at lines 2964--2964 \T1/qtm/m/it/10 timesteps_between_repetitions: Underfull \hbox (badness 10000) in paragraph at lines 2997--3000 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with [41] Underfull \hbox (badness 10000) in paragraph at lines 3007--3010 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [42] Underfull \hbox (badness 10000) in paragraph at lines 3095--3098 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 3105--3108 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [43] Overfull \hbox (59.44379pt too wide) in paragraph at lines 3194--3194 \T1/qtm/m/it/10 timesteps_between_repetitions: [44] Overfull \hbox (69.94376pt too wide) in paragraph at lines 3271--3271 \T1/qtm/m/it/10 timesteps_between_repetitions: Underfull \hbox (badness 10000) in paragraph at lines 3305--3308 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Overfull \hbox (33.19386pt too wide) in paragraph at lines 3330--3330 \T1/qtm/m/it/10 timesteps_between_repetitions: Overfull \hbox (26.16386pt too wide) in paragraph at lines 3330--3330 \T1/qtm/m/it/10 killing_decay_time_constant: [45] Underfull \hbox (badness 10000) in paragraph at lines 3346--3349 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with [46] Underfull \hbox (badness 10000) in paragraph at lines 3464--3467 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with [47] [48] Overfull \hbox (5.13391pt too wide) in paragraph at lines 3566--3566 \T1/qtm/m/it/10 drug_ineligibility_duration: Underfull \hbox (badness 10000) in paragraph at lines 3586--3591 []\T1/txtt/bx/n/10 is \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 properties of individual s to target with the intervention. Underfull \hbox (badness 6094) in paragraph at lines 3586--3591 \T1/txtt/m/sl/10 Default\T1/qtm/m/n/10 ) ^^U \T1/txtt/m/n/10 [{ "trigger":"NewC linicalCase","coverage":0.8,"agemin":15, Underfull \hbox (badness 10000) in paragraph at lines 3586--3591 \T1/txtt/m/n/10 "agemax":70, "seek":0.4,"rate":0.3},{"trigger":"NewSevereCase", Underfull \hbox (badness 10000) in paragraph at lines 3609--3611 []\T1/txtt/bx/n/10 example, \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 individuals must h ave to receive the Underfull \hbox (badness 10000) in paragraph at lines 3609--3611 \T1/txtt/m/sl/10 intervention. For\T1/qtm/m/n/10 ) ^^U \T1/txtt/m/n/10 ["Indivi dualProperty1:PropertyValue1", [49] Overfull \hbox (39.43362pt too wide) in paragraph at lines 3645--3645 []\T1/qtm/m/it/10 campaign\T1/qtm/m/n/10 , Overfull \hbox (38.10359pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 start_day: Overfull \hbox (8.05362pt too wide) in paragraph at lines 3645--3645 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 1\T1/qtm/m/n/10 , Overfull \hbox (10.26363pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 de- Overfull \hbox (13.04362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 mo- Overfull \hbox (71.93361pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 graphic_coverage: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3645--3645 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 1\T1/qtm/m/n/10 , Overfull \hbox (11.9936pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 tar- Overfull \hbox (84.11362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 get_num_individuals: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3645--3645 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (39.17361pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 tional[][][[][]int[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (36.93362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 node_ids: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3645--3645 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (40.7436pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 tional[][][[][]list[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (103.05359pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 ind_property_restrictions: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3645--3645 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (40.7436pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 tional[][][[][]list[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (8.60362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 in- Overfull \hbox (11.28362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 ter- Overfull \hbox (14.40361pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 ven- Overfull \hbox (43.04362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 tion_name: Overfull \hbox (7.95361pt too wide) in paragraph at lines 3645--3645 [][]\T1/qtm/m/it/10 str[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 = Overfull \hbox (14.07361pt too wide) in paragraph at lines 3645--3645 \TS1/qtm/m/it/10 '\T1/qtm/m/it/10 Us- Overfull \hbox (26.47362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 ageDe- Overfull \hbox (15.26363pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 pen- Overfull \hbox (33.59363pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 dentBed- Overfull \hbox (14.20361pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 net\TS1/qtm/m/it/10 '\T1/qtm/m/n/10 , Overfull \hbox (12.49362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 dis- Overfull \hbox (48.29361pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 card_config: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3645--3645 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (43.61362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 tional[][][[][]dict[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (8.60362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 in- Overfull \hbox (13.59363pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 sec- Overfull \hbox (6.38362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 ti- Overfull \hbox (17.48363pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 cide: Overfull \hbox (7.95361pt too wide) in paragraph at lines 3645--3645 [][]\T1/qtm/m/it/10 str[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 = Overfull \hbox (4.27359pt too wide) in paragraph at lines 3645--3645 \TS1/qtm/m/it/10 ''\T1/qtm/m/n/10 , Overfull \hbox (8.8536pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 re- Overfull \hbox (83.63359pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 pelling_initial_effect: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3645--3645 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (8.8536pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 re- Overfull \hbox (86.9436pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 pelling_box_duration: Overfull \hbox (8.05362pt too wide) in paragraph at lines 3645--3645 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (8.8536pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 re- Overfull \hbox (117.6336pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 pelling_decay_time_constant: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3645--3645 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 = Overfull \hbox (19.99362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 1460\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 block- Overfull \hbox (68.63359pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 ing_initial_effect: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3645--3645 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 = Overfull \hbox (12.49362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 0.9\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 block- Overfull \hbox (71.9436pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 ing_box_duration: Overfull \hbox (8.05362pt too wide) in paragraph at lines 3645--3645 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 block- Overfull \hbox (102.6336pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 ing_decay_time_constant: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3645--3645 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 = Overfull \hbox (14.99362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 730\T1/qtm/m/n/10 , Overfull \hbox (81.41359pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 killing_initial_effect: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3645--3645 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (84.7236pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 killing_box_duration: Overfull \hbox (8.05362pt too wide) in paragraph at lines 3645--3645 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (115.4136pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 killing_decay_time_constant: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3645--3645 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 = Overfull \hbox (19.99362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 1460\T1/qtm/m/n/10 , Overfull \hbox (67.01363pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 age_dependence: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3645--3645 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (43.61362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 tional[][][[][]dict[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (14.15363pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 sea- Overfull \hbox (74.69363pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 sonal_dependence: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3645--3645 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (43.61362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 tional[][][[][]dict[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 = Overfull \hbox (23.6036pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 None\T1/txtt/m/n/10 )| [50] Overfull \vbox (635.56755pt too high) has occurred while \output is active [51] Underfull \hbox (badness 6188) in paragraph at lines 3650--3655 []\T1/qtm/m/n/10 box_duration = 0 + de-cay_time_constant > 0 => Waning-Ef-fect- Ex-po-nen-tial Underfull \hbox (badness 10000) in paragraph at lines 3685--3688 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [52] [53] Overfull \hbox (39.43362pt too wide) in paragraph at lines 3833--3833 []\T1/qtm/m/it/10 campaign\T1/qtm/m/n/10 , Overfull \hbox (38.10359pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 start_day: Overfull \hbox (8.05362pt too wide) in paragraph at lines 3833--3833 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 1\T1/qtm/m/n/10 , Overfull \hbox (10.26363pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 de- Overfull \hbox (13.04362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 mo- Overfull \hbox (71.93361pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 graphic_coverage: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3833--3833 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 1\T1/qtm/m/n/10 , Overfull \hbox (36.93362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 node_ids: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3833--3833 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (40.7436pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 tional[][][[][]list[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (103.05359pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 ind_property_restrictions: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3833--3833 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (40.7436pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 tional[][][[][]list[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (15.27362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 trig- Overfull \hbox (73.31358pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 ger_condition_list: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3833--3833 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (40.7436pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 tional[][][[][]list[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (15.27362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 trig- Overfull \hbox (93.44359pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 gered_campaign_delay: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3833--3833 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (46.39362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 tional[][][[][]float[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (10.27362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 lis- Overfull \hbox (12.89363pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 ten- Overfull \hbox (52.80362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 ing_duration: Overfull \hbox (8.05362pt too wide) in paragraph at lines 3833--3833 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 = Overfull \hbox (0.82362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 - Overfull \hbox (4.99362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 1\T1/qtm/m/n/10 , Overfull \hbox (8.60362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 in- Overfull \hbox (11.28362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 ter- Overfull \hbox (14.40361pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 ven- Overfull \hbox (43.04362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 tion_name: Overfull \hbox (7.95361pt too wide) in paragraph at lines 3833--3833 [][]\T1/qtm/m/it/10 str[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 = Overfull \hbox (14.07361pt too wide) in paragraph at lines 3833--3833 \TS1/qtm/m/it/10 '\T1/qtm/m/it/10 Us- Overfull \hbox (26.47362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 ageDe- Overfull \hbox (15.26363pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 pen- Overfull \hbox (33.59363pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 dentBed- Overfull \hbox (14.20361pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 net\TS1/qtm/m/it/10 '\T1/qtm/m/n/10 , Overfull \hbox (12.49362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 dis- Overfull \hbox (48.29361pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 card_config: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3833--3833 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (43.61362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 tional[][][[][]dict[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (8.60362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 in- Overfull \hbox (13.59363pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 sec- Overfull \hbox (6.38362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 ti- Overfull \hbox (17.48363pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 cide: Overfull \hbox (7.95361pt too wide) in paragraph at lines 3833--3833 [][]\T1/qtm/m/it/10 str[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 = Overfull \hbox (4.27359pt too wide) in paragraph at lines 3833--3833 \TS1/qtm/m/it/10 ''\T1/qtm/m/n/10 , Overfull \hbox (8.8536pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 re- Overfull \hbox (83.63359pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 pelling_initial_effect: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3833--3833 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (8.8536pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 re- Overfull \hbox (86.9436pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 pelling_box_duration: Overfull \hbox (8.05362pt too wide) in paragraph at lines 3833--3833 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (8.8536pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 re- Overfull \hbox (117.6336pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 pelling_decay_time_constant: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3833--3833 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 = Overfull \hbox (19.99362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 1460\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 block- Overfull \hbox (68.63359pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 ing_initial_effect: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3833--3833 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 = Overfull \hbox (12.49362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 0.9\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 block- Overfull \hbox (71.9436pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 ing_box_duration: Overfull \hbox (8.05362pt too wide) in paragraph at lines 3833--3833 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 block- Overfull \hbox (102.6336pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 ing_decay_time_constant: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3833--3833 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 = Overfull \hbox (14.99362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 730\T1/qtm/m/n/10 , Overfull \hbox (81.41359pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 killing_initial_effect: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3833--3833 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (84.7236pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 killing_box_duration: Overfull \hbox (8.05362pt too wide) in paragraph at lines 3833--3833 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (115.4136pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 killing_decay_time_constant: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3833--3833 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 = Overfull \hbox (19.99362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 1460\T1/qtm/m/n/10 , Overfull \hbox (67.01363pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 age_dependence: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3833--3833 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (43.61362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 tional[][][[][]dict[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (14.15363pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 sea- Overfull \hbox (74.69363pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 sonal_dependence: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3833--3833 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (43.61362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 tional[][][[][]dict[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 = Overfull \hbox (23.6036pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 None\T1/txtt/m/n/10 )| [54] Overfull \vbox (775.56999pt too high) has occurred while \output is active [55] Underfull \hbox (badness 6188) in paragraph at lines 3838--3843 []\T1/qtm/m/n/10 box_duration = 0 + de-cay_time_constant > 0 => Waning-Ef-fect- Ex-po-nen-tial Underfull \hbox (badness 10000) in paragraph at lines 3868--3871 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [56] Overfull \hbox (88.19377pt too wide) in paragraph at lines 4030--4030 \T1/qtm/m/it/10 name=\TS1/qtm/m/it/10 '\T1/qtm/m/it/10 UsageDependentBednet.jso n\TS1/qtm/m/it/10 '\T1/txtt/m/n/10 )| [57] Underfull \hbox (badness 10000) in paragraph at lines 4074--4077 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 4084--4087 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [58] [59] Underfull \hbox (badness 10000) in paragraph at lines 4187--4190 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 4197--4200 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [60] Overfull \hbox (31.91403pt too wide) in paragraph at lines 4299--4299 \T1/qtm/m/it/10 cific_genome_combinations_for_stratification: [61] Underfull \hbox (badness 5119) in paragraph at lines 4349--4356 \T1/qtm/m/n/10 0 is sim-i-lar to 0-1). De-pends on: ^^PGENOME^^Q, ^^PSPE-CIFIC_ GENOME^^Q spe- [62] [63] [64] Overfull \hbox (2.92401pt too wide) in paragraph at lines 4672--4672 \T1/qtm/m/it/10 clude_30day_avg_infection_duration: [65] Overfull \hbox (6.20389pt too wide) in paragraph at lines 4745--4745 \T1/qtm/m/it/10 must_have_ip_key_value: Overfull \hbox (1.87387pt too wide) in paragraph at lines 4745--4745 \T1/qtm/m/it/10 must_have_intervention: Overfull \hbox (55.41386pt too wide) in paragraph at lines 4745--4745 \T1/qtm/m/it/10 clude_30day_avg_infection_duration: [66] Underfull \hbox (badness 5119) in paragraph at lines 4868--4877 \T1/qtm/m/n/10 put for. Avail-able chan-nels are: ^^PAdult_Vectors^^Q, ^^PAir_T emperature^^Q, ^^PBirths^^Q, Underfull \hbox (badness 10000) in paragraph at lines 4868--4877 \T1/qtm/m/n/10 ^^PBlood_Smear_Gametocyte_Prevalence^^Q, ^^PBlood_Smear_Parasite _Prevalence^^Q, Underfull \hbox (badness 10000) in paragraph at lines 4868--4877 \T1/qtm/m/n/10 ^^PCam-paign_Cost^^Q, ^^PDaily_Bites_Per_Human^^Q, ^^PDaily_EIR^ ^Q, ^^PDis-ease_Deaths^^Q, Underfull \hbox (badness 10000) in paragraph at lines 4868--4877 \T1/qtm/m/n/10 ^^PNew_Reported_Infections^^Q, ^^PNew_Severe_Cases^^Q, ^^PPCR_Ga metocyte_Prevalence^^Q, Underfull \hbox (badness 10000) in paragraph at lines 4868--4877 \T1/qtm/m/n/10 ^^PPCR_Parasite_Prevalence^^Q, ^^PPfHRP2_Prevalence^^Q, ^^PPop-u -la-tion^^Q, ^^PPreva- Underfull \hbox (badness 10000) in paragraph at lines 4868--4877 \T1/qtm/m/n/10 lence^^Q, ^^PRain-fall^^Q, ^^PRel-a-tive_Humidity^^Q, ^^PTrue_Pr evalence^^Q De-faults: [67] [68] [69] [70] Overfull \hbox (4.70392pt too wide) in paragraph at lines 5326--5326 \T1/qtm/m/it/10 ify_by_clinical_symptoms: [71] Overfull \hbox (38.49373pt too wide) in paragraph at lines 5372--5372 \T1/qtm/m/it/10 drug_resistant_strings: Overfull \hbox (63.94373pt too wide) in paragraph at lines 5372--5372 \T1/qtm/m/it/10 drug_resistant_statistic_type: Overfull \hbox (156.42372pt too wide) in paragraph at lines 5372--5372 \TS1/qtm/m/it/10 '\T1/qtm/m/it/10 NUM_PEOPLE_WITH_RESISTANT_INFECTION\TS1/qtm/m /it/10 '\T1/qtm/m/n/10 , Overfull \hbox (18.46376pt too wide) in paragraph at lines 5372--5372 \T1/qtm/m/it/10 ip_key_to_collect: Overfull \hbox (4.78375pt too wide) in paragraph at lines 5372--5372 \T1/qtm/m/it/10 ify_by_gender: [72] [73] Underfull \hbox (badness 7308) in paragraph at lines 5533--5535 []\T1/txtt/bx/n/10 event_list \T1/qtm/m/n/10 ^^U a list of events to record or ex-clude, de-pend-ing on value of [74] [75] [76] Underfull \hbox (badness 10000) in paragraph at lines 5785--5791 []\T1/qtm/m/n/10 The sim-ple malaria trans-mis-sion re-port (Re-port-Sim-ple-Ma lar-i-a-Trans-mis-sion-J-SON.json) is a JSON- [77] [78] [79] Overfull \hbox (3.4238pt too wide) in paragraph at lines 6123--6123 \T1/qtm/m/it/10 ing.Optional[str] [80] Underfull \hbox (badness 10000) in paragraph at lines 6269--6272 []\T1/qtm/m/n/10 Sets up the de-fault pa-ram-e-ters for par-a-site ge-net-ics s im-u-la-tions Malaria_Model = [81] Underfull \hbox (badness 6510) in paragraph at lines 6283--6285 []\T1/txtt/bx/n/10 var_gene_randomness_type \T1/qtm/m/n/10 ^^U pos-si-ble val-u es are ^^PFIXED_NEIGHBORHOOD^^Q, [82] Underfull \hbox (badness 10000) in paragraph at lines 6433--6437 \T1/qtm/m/n/10 sim-u-la-tion.task.config.parameters.Vector_Species_Params[i][^^ PHabitats^^Q][j][^^PMax_Larval_Capacity^^Q] = [83] [84] [85] Overfull \vbox (0.52191pt too high) detected at line 6853 [86] [87] [88] Underfull \hbox (badness 10000) in paragraph at lines 7056--7060 \T1/qtm/m/n/10 sim-u-la-tion.task.config.parameters.Vector_Species_Params[i][^^ PHabitats^^Q][j][^^PMax_Larval_Capacity^^Q] = [89] [90] Chapter 3. 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(rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information){/usr/share/texmf/fonts/enc /dvips/tex-gyre/q-ec.enc}{/usr/share/texlive/texmf-dist/fonts/enc/dvips/base/8r .enc}{/usr/share/texmf/fonts/enc/dvips/tex-gyre/q-ts1.enc} Output written on institute-for-disease-modeling-emodpy-malaria.pdf (105 pages, 440389 bytes). Transcript written on institute-for-disease-modeling-emodpy-malaria.log. Latexmk: Index file 'institute-for-disease-modeling-emodpy-malaria.idx' was written Latexmk: Missing input file: 'institute-for-disease-modeling-emodpy-malaria.ind' from line 'No file institute-for-disease-modeling-emodpy-malaria.ind.' Latexmk: References changed. Latexmk: References changed. Latexmk: Log file says output to 'institute-for-disease-modeling-emodpy-malaria.pdf' Latexmk: Log file says output to 'institute-for-disease-modeling-emodpy-malaria.pdf' Latexmk: List of undefined refs and citations: Reference `emodpy_malaria.demographics.MalariaDemographics:module-emodpy_malaria.demographics.MalariaDemographics' on page 101 undefined on input line 7660 Reference `emodpy_malaria.demographics:module-emodpy_malaria.demographics' on page 101 undefined on input line 7659 Reference `emodpy_malaria.interventions.adherentdrug:module-emodpy_malaria.interventions.adherentdrug' on page 101 undefined on input line 7662 Reference `emodpy_malaria.interventions.bednet:module-emodpy_malaria.interventions.bednet' on page 101 undefined on input line 7663 Reference `emodpy_malaria.interventions.common:module-emodpy_malaria.interventions.common' on page 101 undefined on input line 7664 Reference `emodpy_malaria.interventions.community_health_worker:module-emodpy_malaria.interventions.community_health_worker' on page 101 undefined on input line 7665 Reference `emodpy_malaria.interventions.diag_survey:module-emodpy_malaria.interventions.diag_survey' on page 101 undefined on input line 7666 Reference `emodpy_malaria.interventions.drug:module-emodpy_malaria.interventions.drug' on page 101 undefined on input line 7667 Reference `emodpy_malaria.interventions.drug_campaign:module-emodpy_malaria.interventions.drug_campaign' on page 101 undefined on input line 7668 Reference `emodpy_malaria.interventions.inputeir:module-emodpy_malaria.interventions.inputeir' on page 101 undefined on input line 7669 Reference `emodpy_malaria.interventions.irs:module-emodpy_malaria.interventions.irs' on page 101 undefined on input line 7670 Reference `emodpy_malaria.interventions.ivermectin:module-emodpy_malaria.interventions.ivermectin' on page 101 undefined on input line 7671 Reference `emodpy_malaria.interventions.larvicide:module-emodpy_malaria.interventions.larvicide' on page 101 undefined on input line 7672 Reference `emodpy_malaria.interventions.mosquitorelease:module-emodpy_malaria.interventions.mosquitorelease' on page 101 undefined on input line 7673 Reference `emodpy_malaria.interventions.outbreak:module-emodpy_malaria.interventions.outbreak' on page 101 undefined on input line 7674 Reference `emodpy_malaria.interventions.outdoorrestkill:module-emodpy_malaria.interventions.outdoorrestkill' on page 101 undefined on input line 7675 Reference `emodpy_malaria.interventions.scale_larval_habitats:module-emodpy_malaria.interventions.scale_larval_habitats' on page 101 undefined on input line 7676 Reference `emodpy_malaria.interventions.spacespraying:module-emodpy_malaria.interventions.spacespraying' on page 101 undefined on input line 7677 Reference `emodpy_malaria.interventions.sugartrap:module-emodpy_malaria.interventions.sugartrap' on page 101 undefined on input line 7678 Reference `emodpy_malaria.interventions.treatment_seeking:module-emodpy_malaria.interventions.treatment_seeking' on page 101 undefined on input line 7679 Reference `emodpy_malaria.interventions.usage_dependent_bednet:module-emodpy_malaria.interventions.usage_dependent_bednet' on page 101 undefined on input line 7680 Reference `emodpy_malaria.interventions.vaccine:module-emodpy_malaria.interventions.vaccine' on page 101 undefined on input line 7681 Reference `emodpy_malaria.interventions:module-emodpy_malaria.interventions' on page 101 undefined on input line 7661 Reference `emodpy_malaria.malaria_config:module-emodpy_malaria.malaria_config' on page 101 undefined on input line 7682 Reference `emodpy_malaria.malaria_vector_species_params:module-emodpy_malaria.malaria_vector_species_params' on page 101 undefined on input line 7683 Reference `emodpy_malaria.reporters.builtin:module-emodpy_malaria.reporters.builtin' on page 101 undefined on input line 7685 Reference `emodpy_malaria.reporters:module-emodpy_malaria.reporters' on page 101 undefined on input line 7684 Reference `emodpy_malaria.vector_config:module-emodpy_malaria.vector_config' on page 101 undefined on input line 7686 Reference `emodpy_malaria:module-emodpy_malaria' on page 101 undefined on input line 7658 Latexmk: Summary of warnings: Latex failed to resolve 29 reference(s) Rule 'makeindex institute-for-disease-modeling-emodpy-malaria.idx': File changes, etc: Non-existent destination files: 'institute-for-disease-modeling-emodpy-malaria.ind' ------------ Run number 1 of rule 'makeindex institute-for-disease-modeling-emodpy-malaria.idx' ------------ ------------ Running 'makeindex -s python.ist -o "institute-for-disease-modeling-emodpy-malaria.ind" "institute-for-disease-modeling-emodpy-malaria.idx"' ------------ Latexmk: applying rule 'makeindex institute-for-disease-modeling-emodpy-malaria.idx'... 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(/usr/share/texmf/tex/latex/tex-gyre/ts1qtm.fd) (/usr/share/texlive/texmf-dist/tex/latex/txfonts/t1txtt.fd) [3] [4] Chapter 2. Overfull \hbox (57.31381pt too wide) in paragraph at lines 258--258 \T1/qtm/m/it/10 clude_biting_heterogeneity=True\T1/txtt/m/n/10 )| Underfull \hbox (badness 5274) in paragraph at lines 305--308 []\T1/qtm/m/n/10 Set ini-tial risk for low-medium trans-mis-sion set-tings per: [][]$https : / / wiki . idmod . org / display / MAL / [5] Overfull \hbox (20.56392pt too wide) in paragraph at lines 413--413 \T1/qtm/m/it/10 clude_biting_heterogeneity=True\T1/txtt/m/n/10 )| [6] Overfull \hbox (35.49402pt too wide) in paragraph at lines 457--457 \T1/qtm/m/it/10 pop_filename_out=\TS1/qtm/m/it/10 '\T1/qtm/m/it/10 spatial_grid ded_pop_dir\TS1/qtm/m/it/10 '\T1/qtm/m/n/10 , [7] [8] [9] Underfull \hbox (badness 10000) in paragraph at lines 722--725 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 732--736 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, Underfull \hbox (badness 10000) in paragraph at lines 732--736 \T1/qtm/b/n/10 erty_Restrictions_Within_Node\T1/qtm/m/n/10 . In the for-mat \T1 /txtt/m/n/10 [{ "BitingRisk":"High"}, [10] Underfull \hbox (badness 10000) in paragraph at lines 867--870 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with [11] Underfull \hbox (badness 10000) in paragraph at lines 877--881 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, Underfull \hbox (badness 10000) in paragraph at lines 877--881 \T1/qtm/b/n/10 erty_Restrictions_Within_Node\T1/qtm/m/n/10 . In the for-mat \T1 /txtt/m/n/10 [{ "BitingRisk":"High"}, [12] Overfull \hbox (27.94388pt too wide) in paragraph at lines 974--974 \T1/qtm/m/it/10 timesteps_between_repetitions: Overfull \hbox (8.55386pt too wide) in paragraph at lines 974--974 \T1/qtm/m/it/10 ind_property_restrictions: Overfull \hbox (4.09389pt too wide) in paragraph at lines 974--974 \T1/qtm/m/it/10 out_on_first_occurrence: [13] Underfull \hbox (badness 10000) in paragraph at lines 1015--1018 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 1025--1028 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [14] Underfull \hbox (badness 10000) in paragraph at lines 1107--1110 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 1117--1120 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, Overfull \hbox (31.3137pt too wide) in paragraph at lines 1159--1159 \T1/qtm/m/it/10 ger_condition_list: Overfull \hbox (29.93373pt too wide) in paragraph at lines 1159--1159 \T1/qtm/m/it/10 graphic_coverage: Overfull \hbox (61.05371pt too wide) in paragraph at lines 1159--1159 \T1/qtm/m/it/10 ind_property_restrictions: Overfull \hbox (9.43373pt too wide) in paragraph at lines 1159--1159 \T1/qtm/m/it/10 get_age_min: Overfull \hbox (11.09373pt too wide) in paragraph at lines 1159--1159 \T1/qtm/m/it/10 get_age_max: Overfull \hbox (2.46371pt too wide) in paragraph at lines 1159--1159 \T1/qtm/m/it/10 get_gender: Overfull \hbox (6.86372pt too wide) in paragraph at lines 1159--1159 \T1/qtm/m/it/10 tial_amount: Overfull \hbox (42.41373pt too wide) in paragraph at lines 1159--1159 \T1/qtm/m/it/10 amount_in_shipment: Overfull \hbox (7.99374pt too wide) in paragraph at lines 1159--1159 \T1/qtm/m/it/10 2147480000\T1/qtm/m/n/10 , Overfull \hbox (59.27374pt too wide) in paragraph at lines 1159--1159 \T1/qtm/m/it/10 days_between_shipments: Overfull \hbox (11.68375pt too wide) in paragraph at lines 1159--1159 \T1/qtm/m/it/10 3.40282e+38\T1/qtm/m/n/10 , Overfull \hbox (3.82375pt too wide) in paragraph at lines 1159--1159 \T1/qtm/m/it/10 tion_config: Overfull \hbox (1.05374pt too wide) in paragraph at lines 1159--1159 \T1/qtm/m/it/10 tional[][][any] Overfull \hbox (60.84373pt too wide) in paragraph at lines 1159--1159 \T1/qtm/m/it/10 max_distributed_per_day: Overfull \hbox (7.99374pt too wide) in paragraph at lines 1159--1159 \T1/qtm/m/it/10 2147480000\T1/qtm/m/n/10 , Overfull \hbox (0.53372pt too wide) in paragraph at lines 1159--1159 \T1/qtm/m/it/10 max_stock: Overfull \hbox (7.99374pt too wide) in paragraph at lines 1159--1159 \T1/qtm/m/it/10 2147480000\T1/qtm/m/n/10 , Overfull \hbox (2.71375pt too wide) in paragraph at lines 1159--1159 \T1/qtm/m/it/10 ing_period: [15] Overfull \vbox (11.56755pt too high) has occurred while \output is active [16] Underfull \hbox (badness 10000) in paragraph at lines 1192--1195 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [17] Underfull \hbox (badness 10000) in paragraph at lines 1304--1309 []\T1/txtt/bx/n/10 diagnostic_type \T1/qtm/m/n/10 ^^U Type of malaria di-ag-nos -tic used. De-fault is [18] Underfull \hbox (badness 10000) in paragraph at lines 1360--1364 []\T1/qtm/m/n/10 In ga-me-to-cytes/microliter, use mea-sure- Underfull \hbox (badness 10000) in paragraph at lines 1388--1391 []\T1/txtt/bx/n/10 measurement_sensitivity \T1/qtm/m/n/10 ^^U Set-ting for \T1/ qtm/b/n/10 Mea-sure-ment_Sensitivity \T1/qtm/m/n/10 in Underfull \hbox (badness 10000) in paragraph at lines 1417--1423 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U List of In-di-v id-u-al-Prop-erty key:value Underfull \hbox (badness 10000) in paragraph at lines 1417--1423 \T1/qtm/m/n/10 pairs that in-di-vid-u-als must have to re-ceive the di-ag-nos-t ic in-ter-ven- Underfull \hbox (badness 10000) in paragraph at lines 1417--1423 \T1/qtm/m/n/10 tion. For ex-am-ple, \T1/txtt/m/n/10 [{"IndividualProperty1":"Pr opertyValue1"}, Underfull \hbox (badness 10000) in paragraph at lines 1425--1430 []\T1/txtt/bx/n/10 disqualifying_properties \T1/qtm/m/n/10 ^^U List of In-di-vi d-u-al-Prop-erty Underfull \hbox (badness 10000) in paragraph at lines 1425--1430 \T1/qtm/m/n/10 key:value pairs that cause an in-ter-ven-tion to be aborted. For Underfull \hbox (badness 10000) in paragraph at lines 1425--1430 \T1/qtm/m/n/10 ex-am-ple, \T1/txtt/m/n/10 [{"IndividualProperty1":"PropertyValu e1"}, [19] Underfull \hbox (badness 10000) in paragraph at lines 1453--1457 []\T1/txtt/bx/n/10 expire_recent_drugs \T1/qtm/m/n/10 ^^U Adds \T1/txtt/m/n/10 [{"DrugStatus:None"}] \T1/qtm/m/n/10 to \T1/qtm/b/n/10 Prop- Overfull \hbox (1.69395pt too wide) in paragraph at lines 1474--1474 \T1/qtm/m/it/10 timesteps_between_repetitions: Underfull \hbox (badness 10000) in paragraph at lines 1505--1508 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 1515--1518 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [20] Overfull \hbox (72.89397pt too wide) in paragraph at lines 1634--1634 \T1/qtm/m/it/10 ing_drugs_event_name=\TS1/qtm/m/it/10 '\T1/qtm/m/it/10 Received _Campaign_Drugs\TS1/qtm/m/it/10 '\T1/txtt/m/n/10 )| [21] [22] (/usr/share/texlive/texmf-dist/tex/latex/txfonts/ts1txtt.fd) [23] Overfull \hbox (25.23418pt too wide) in paragraph at lines 1863--1863 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.BroadcastEvent] Overfull \hbox (54.63417pt too wide) in paragraph at lines 1863--1863 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.PropertyValueChanger] Overfull \hbox (30.48416pt too wide) in paragraph at lines 1880--1880 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.BroadcastEvent] Overfull \hbox (59.88416pt too wide) in paragraph at lines 1880--1880 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.PropertyValueChanger] [24] Overfull \hbox (30.48416pt too wide) in paragraph at lines 1897--1897 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.BroadcastEvent] Overfull \hbox (59.88416pt too wide) in paragraph at lines 1897--1897 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.PropertyValueChanger] Underfull \hbox (badness 10000) in paragraph at lines 1898--1902 []\T1/qtm/m/n/10 Add an fMDA (fo-cal mass drug ad-min-is-tra-tion) drug in-ter- ven-tion to your cam-paign. See Overfull \hbox (40.98413pt too wide) in paragraph at lines 1914--1914 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.BroadcastEvent] Overfull \hbox (70.38412pt too wide) in paragraph at lines 1914--1914 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.PropertyValueChanger] [25] Overfull \hbox (35.73415pt too wide) in paragraph at lines 1931--1931 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.BroadcastEvent] Overfull \hbox (65.13414pt too wide) in paragraph at lines 1931--1931 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.PropertyValueChanger] [26] [27] Overfull \hbox (26.20386pt too wide) in paragraph at lines 2088--2088 \T1/qtm/m/it/10 killing_decay_time_constant: Overfull \hbox (28.42386pt too wide) in paragraph at lines 2088--2088 \T1/qtm/m/it/10 pelling_decay_time_constant: [28] Overfull \hbox (26.20386pt too wide) in paragraph at lines 2167--2167 \T1/qtm/m/it/10 killing_decay_time_constant: Overfull \hbox (28.42386pt too wide) in paragraph at lines 2167--2167 \T1/qtm/m/it/10 pelling_decay_time_constant: [29] [30] [31] Underfull \hbox (badness 10000) in paragraph at lines 2373--2376 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 2383--2386 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [32] [33] Underfull \hbox (badness 10000) in paragraph at lines 2486--2489 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [34] Underfull \hbox (badness 10000) in paragraph at lines 2576--2579 []\T1/txtt/bx/n/10 habitat_target \T1/qtm/m/n/10 ^^U Pos-si-ble val-ues are: ^^ PTEM-PO-RARY_RAINFALL^^Q, ^^PWA- Underfull \hbox (badness 10000) in paragraph at lines 2576--2579 \T1/qtm/m/n/10 TER_VEGETATION^^Q, ^^PHU-MAN_POPULATION^^Q, ^^PCON-STANT^^Q, ^^P BRACK- Overfull \hbox (54.1938pt too wide) in paragraph at lines 2628--2628 \T1/qtm/m/it/10 timesteps_between_repetitions: Overfull \hbox (1.7138pt too wide) in paragraph at lines 2628--2628 \T1/qtm/m/it/10 leased_infectious: [35] Underfull \hbox (badness 10000) in paragraph at lines 2649--2652 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 7576) in paragraph at lines 2665--2667 []\T1/txtt/bx/n/10 released_number \T1/qtm/m/n/10 ^^U The num-ber of vec-tors t o re-lease, sets Re-leased_Type = [36] Underfull \hbox (badness 10000) in paragraph at lines 2676--2679 []\T1/txtt/bx/n/10 released_infectious \T1/qtm/m/n/10 ^^U The frac-tion of vec- tors re-leased that Underfull \hbox (badness 10000) in paragraph at lines 2676--2679 \T1/qtm/m/n/10 are to be in-fec-tious. One can only use this fea-ture when Overfull \hbox (16.29498pt too wide) in paragraph at lines 2676--2679 \T1/qtm/m/n/10 `Malaria_Model'!='MALARIA_MECHANISTIC_MODEL_WITH_PARASITE_GENETI CS' [37] Underfull \hbox (badness 10000) in paragraph at lines 2767--2770 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 2777--2780 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, Overfull \hbox (12.19392pt too wide) in paragraph at lines 2830--2830 \T1/qtm/m/it/10 timesteps_between_repetitions: Overfull \hbox (14.34396pt too wide) in paragraph at lines 2830--2830 \T1/qtm/m/it/10 ate_nucleotide_sequence_from: Overfull \hbox (79.13393pt too wide) in paragraph at lines 2830--2830 \T1/qtm/m/it/10 code_allele_frequencies_per_genome_location: Overfull \hbox (118.29388pt too wide) in paragraph at lines 2830--2830 \T1/qtm/m/it/10 drug_resistant_allele_frequencies_per_genome_location: [38] Underfull \hbox (badness 10000) in paragraph at lines 2863--2866 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with [39] Underfull \hbox (badness 10000) in paragraph at lines 2873--2876 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [40] Overfull \hbox (17.44391pt too wide) in paragraph at lines 2964--2964 \T1/qtm/m/it/10 timesteps_between_repetitions: Underfull \hbox (badness 10000) in paragraph at lines 2997--3000 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with [41] Underfull \hbox (badness 10000) in paragraph at lines 3007--3010 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [42] Underfull \hbox (badness 10000) in paragraph at lines 3095--3098 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 3105--3108 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [43] Overfull \hbox (59.44379pt too wide) in paragraph at lines 3194--3194 \T1/qtm/m/it/10 timesteps_between_repetitions: [44] Overfull \hbox (69.94376pt too wide) in paragraph at lines 3271--3271 \T1/qtm/m/it/10 timesteps_between_repetitions: Underfull \hbox (badness 10000) in paragraph at lines 3305--3308 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Overfull \hbox (33.19386pt too wide) in paragraph at lines 3330--3330 \T1/qtm/m/it/10 timesteps_between_repetitions: Overfull \hbox (26.16386pt too wide) in paragraph at lines 3330--3330 \T1/qtm/m/it/10 killing_decay_time_constant: [45] Underfull \hbox (badness 10000) in paragraph at lines 3346--3349 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with [46] Underfull \hbox (badness 10000) in paragraph at lines 3464--3467 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with [47] [48] Overfull \hbox (5.13391pt too wide) in paragraph at lines 3566--3566 \T1/qtm/m/it/10 drug_ineligibility_duration: Underfull \hbox (badness 10000) in paragraph at lines 3586--3591 []\T1/txtt/bx/n/10 is \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 properties of individual s to target with the intervention. Underfull \hbox (badness 6094) in paragraph at lines 3586--3591 \T1/txtt/m/sl/10 Default\T1/qtm/m/n/10 ) ^^U \T1/txtt/m/n/10 [{ "trigger":"NewC linicalCase","coverage":0.8,"agemin":15, Underfull \hbox (badness 10000) in paragraph at lines 3586--3591 \T1/txtt/m/n/10 "agemax":70, "seek":0.4,"rate":0.3},{"trigger":"NewSevereCase", Underfull \hbox (badness 10000) in paragraph at lines 3609--3611 []\T1/txtt/bx/n/10 example, \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 individuals must h ave to receive the Underfull \hbox (badness 10000) in paragraph at lines 3609--3611 \T1/txtt/m/sl/10 intervention. For\T1/qtm/m/n/10 ) ^^U \T1/txtt/m/n/10 ["Indivi dualProperty1:PropertyValue1", [49] Overfull \hbox (39.43362pt too wide) in paragraph at lines 3645--3645 []\T1/qtm/m/it/10 campaign\T1/qtm/m/n/10 , Overfull \hbox (38.10359pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 start_day: Overfull \hbox (8.05362pt too wide) in paragraph at lines 3645--3645 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 1\T1/qtm/m/n/10 , Overfull \hbox (10.26363pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 de- Overfull \hbox (13.04362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 mo- Overfull \hbox (71.93361pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 graphic_coverage: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3645--3645 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 1\T1/qtm/m/n/10 , Overfull \hbox (11.9936pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 tar- Overfull \hbox (84.11362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 get_num_individuals: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3645--3645 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (39.17361pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 tional[][][[][]int[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (36.93362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 node_ids: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3645--3645 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (40.7436pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 tional[][][[][]list[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (103.05359pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 ind_property_restrictions: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3645--3645 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (40.7436pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 tional[][][[][]list[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (8.60362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 in- Overfull \hbox (11.28362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 ter- Overfull \hbox (14.40361pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 ven- Overfull \hbox (43.04362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 tion_name: Overfull \hbox (7.95361pt too wide) in paragraph at lines 3645--3645 [][]\T1/qtm/m/it/10 str[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 = Overfull \hbox (14.07361pt too wide) in paragraph at lines 3645--3645 \TS1/qtm/m/it/10 '\T1/qtm/m/it/10 Us- Overfull \hbox (26.47362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 ageDe- Overfull \hbox (15.26363pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 pen- Overfull \hbox (33.59363pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 dentBed- Overfull \hbox (14.20361pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 net\TS1/qtm/m/it/10 '\T1/qtm/m/n/10 , Overfull \hbox (12.49362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 dis- Overfull \hbox (48.29361pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 card_config: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3645--3645 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (43.61362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 tional[][][[][]dict[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (8.60362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 in- Overfull \hbox (13.59363pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 sec- Overfull \hbox (6.38362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 ti- Overfull \hbox (17.48363pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 cide: Overfull \hbox (7.95361pt too wide) in paragraph at lines 3645--3645 [][]\T1/qtm/m/it/10 str[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 = Overfull \hbox (4.27359pt too wide) in paragraph at lines 3645--3645 \TS1/qtm/m/it/10 ''\T1/qtm/m/n/10 , Overfull \hbox (8.8536pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 re- Overfull \hbox (83.63359pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 pelling_initial_effect: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3645--3645 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (8.8536pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 re- Overfull \hbox (86.9436pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 pelling_box_duration: Overfull \hbox (8.05362pt too wide) in paragraph at lines 3645--3645 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (8.8536pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 re- Overfull \hbox (117.6336pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 pelling_decay_time_constant: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3645--3645 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 = Overfull \hbox (19.99362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 1460\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 block- Overfull \hbox (68.63359pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 ing_initial_effect: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3645--3645 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 = Overfull \hbox (12.49362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 0.9\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 block- Overfull \hbox (71.9436pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 ing_box_duration: Overfull \hbox (8.05362pt too wide) in paragraph at lines 3645--3645 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 block- Overfull \hbox (102.6336pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 ing_decay_time_constant: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3645--3645 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 = Overfull \hbox (14.99362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 730\T1/qtm/m/n/10 , Overfull \hbox (81.41359pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 killing_initial_effect: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3645--3645 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (84.7236pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 killing_box_duration: Overfull \hbox (8.05362pt too wide) in paragraph at lines 3645--3645 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (115.4136pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 killing_decay_time_constant: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3645--3645 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 = Overfull \hbox (19.99362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 1460\T1/qtm/m/n/10 , Overfull \hbox (67.01363pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 age_dependence: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3645--3645 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (43.61362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 tional[][][[][]dict[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (14.15363pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 sea- Overfull \hbox (74.69363pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 sonal_dependence: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3645--3645 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (43.61362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 tional[][][[][]dict[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 = Overfull \hbox (23.6036pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 None\T1/txtt/m/n/10 )| [50] Overfull \vbox (635.56755pt too high) has occurred while \output is active [51] Underfull \hbox (badness 6188) in paragraph at lines 3650--3655 []\T1/qtm/m/n/10 box_duration = 0 + de-cay_time_constant > 0 => Waning-Ef-fect- Ex-po-nen-tial Underfull \hbox (badness 10000) in paragraph at lines 3685--3688 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [52] [53] Overfull \hbox (39.43362pt too wide) in paragraph at lines 3833--3833 []\T1/qtm/m/it/10 campaign\T1/qtm/m/n/10 , Overfull \hbox (38.10359pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 start_day: Overfull \hbox (8.05362pt too wide) in paragraph at lines 3833--3833 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 1\T1/qtm/m/n/10 , Overfull \hbox (10.26363pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 de- Overfull \hbox (13.04362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 mo- Overfull \hbox (71.93361pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 graphic_coverage: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3833--3833 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 1\T1/qtm/m/n/10 , Overfull \hbox (36.93362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 node_ids: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3833--3833 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (40.7436pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 tional[][][[][]list[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (103.05359pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 ind_property_restrictions: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3833--3833 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (40.7436pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 tional[][][[][]list[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (15.27362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 trig- Overfull \hbox (73.31358pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 ger_condition_list: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3833--3833 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (40.7436pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 tional[][][[][]list[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (15.27362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 trig- Overfull \hbox (93.44359pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 gered_campaign_delay: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3833--3833 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (46.39362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 tional[][][[][]float[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (10.27362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 lis- Overfull \hbox (12.89363pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 ten- Overfull \hbox (52.80362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 ing_duration: Overfull \hbox (8.05362pt too wide) in paragraph at lines 3833--3833 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 = Overfull \hbox (0.82362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 - Overfull \hbox (4.99362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 1\T1/qtm/m/n/10 , Overfull \hbox (8.60362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 in- Overfull \hbox (11.28362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 ter- Overfull \hbox (14.40361pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 ven- Overfull \hbox (43.04362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 tion_name: Overfull \hbox (7.95361pt too wide) in paragraph at lines 3833--3833 [][]\T1/qtm/m/it/10 str[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 = Overfull \hbox (14.07361pt too wide) in paragraph at lines 3833--3833 \TS1/qtm/m/it/10 '\T1/qtm/m/it/10 Us- Overfull \hbox (26.47362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 ageDe- Overfull \hbox (15.26363pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 pen- Overfull \hbox (33.59363pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 dentBed- Overfull \hbox (14.20361pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 net\TS1/qtm/m/it/10 '\T1/qtm/m/n/10 , Overfull \hbox (12.49362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 dis- Overfull \hbox (48.29361pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 card_config: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3833--3833 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (43.61362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 tional[][][[][]dict[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (8.60362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 in- Overfull \hbox (13.59363pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 sec- Overfull \hbox (6.38362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 ti- Overfull \hbox (17.48363pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 cide: Overfull \hbox (7.95361pt too wide) in paragraph at lines 3833--3833 [][]\T1/qtm/m/it/10 str[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 = Overfull \hbox (4.27359pt too wide) in paragraph at lines 3833--3833 \TS1/qtm/m/it/10 ''\T1/qtm/m/n/10 , Overfull \hbox (8.8536pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 re- Overfull \hbox (83.63359pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 pelling_initial_effect: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3833--3833 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (8.8536pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 re- Overfull \hbox (86.9436pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 pelling_box_duration: Overfull \hbox (8.05362pt too wide) in paragraph at lines 3833--3833 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (8.8536pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 re- Overfull \hbox (117.6336pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 pelling_decay_time_constant: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3833--3833 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 = Overfull \hbox (19.99362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 1460\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 block- Overfull \hbox (68.63359pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 ing_initial_effect: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3833--3833 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 = Overfull \hbox (12.49362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 0.9\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 block- Overfull \hbox (71.9436pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 ing_box_duration: Overfull \hbox (8.05362pt too wide) in paragraph at lines 3833--3833 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 block- Overfull \hbox (102.6336pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 ing_decay_time_constant: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3833--3833 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 = Overfull \hbox (14.99362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 730\T1/qtm/m/n/10 , Overfull \hbox (81.41359pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 killing_initial_effect: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3833--3833 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (84.7236pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 killing_box_duration: Overfull \hbox (8.05362pt too wide) in paragraph at lines 3833--3833 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (115.4136pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 killing_decay_time_constant: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3833--3833 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 = Overfull \hbox (19.99362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 1460\T1/qtm/m/n/10 , Overfull \hbox (67.01363pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 age_dependence: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3833--3833 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (43.61362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 tional[][][[][]dict[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (14.15363pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 sea- Overfull \hbox (74.69363pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 sonal_dependence: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3833--3833 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (43.61362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 tional[][][[][]dict[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 = Overfull \hbox (23.6036pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 None\T1/txtt/m/n/10 )| [54] Overfull \vbox (775.56999pt too high) has occurred while \output is active [55] Underfull \hbox (badness 6188) in paragraph at lines 3838--3843 []\T1/qtm/m/n/10 box_duration = 0 + de-cay_time_constant > 0 => Waning-Ef-fect- Ex-po-nen-tial Underfull \hbox (badness 10000) in paragraph at lines 3868--3871 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [56] Overfull \hbox (88.19377pt too wide) in paragraph at lines 4030--4030 \T1/qtm/m/it/10 name=\TS1/qtm/m/it/10 '\T1/qtm/m/it/10 UsageDependentBednet.jso n\TS1/qtm/m/it/10 '\T1/txtt/m/n/10 )| [57] Underfull \hbox (badness 10000) in paragraph at lines 4074--4077 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 4084--4087 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [58] [59] Underfull \hbox (badness 10000) in paragraph at lines 4187--4190 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 4197--4200 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [60] Overfull \hbox (31.91403pt too wide) in paragraph at lines 4299--4299 \T1/qtm/m/it/10 cific_genome_combinations_for_stratification: [61] Underfull \hbox (badness 5119) in paragraph at lines 4349--4356 \T1/qtm/m/n/10 0 is sim-i-lar to 0-1). De-pends on: ^^PGENOME^^Q, ^^PSPE-CIFIC_ GENOME^^Q spe- [62] [63] [64] Overfull \hbox (2.92401pt too wide) in paragraph at lines 4672--4672 \T1/qtm/m/it/10 clude_30day_avg_infection_duration: [65] Overfull \hbox (6.20389pt too wide) in paragraph at lines 4745--4745 \T1/qtm/m/it/10 must_have_ip_key_value: Overfull \hbox (1.87387pt too wide) in paragraph at lines 4745--4745 \T1/qtm/m/it/10 must_have_intervention: Overfull \hbox (55.41386pt too wide) in paragraph at lines 4745--4745 \T1/qtm/m/it/10 clude_30day_avg_infection_duration: [66] Underfull \hbox (badness 5119) in paragraph at lines 4868--4877 \T1/qtm/m/n/10 put for. Avail-able chan-nels are: ^^PAdult_Vectors^^Q, ^^PAir_T emperature^^Q, ^^PBirths^^Q, Underfull \hbox (badness 10000) in paragraph at lines 4868--4877 \T1/qtm/m/n/10 ^^PBlood_Smear_Gametocyte_Prevalence^^Q, ^^PBlood_Smear_Parasite _Prevalence^^Q, Underfull \hbox (badness 10000) in paragraph at lines 4868--4877 \T1/qtm/m/n/10 ^^PCam-paign_Cost^^Q, ^^PDaily_Bites_Per_Human^^Q, ^^PDaily_EIR^ ^Q, ^^PDis-ease_Deaths^^Q, Underfull \hbox (badness 10000) in paragraph at lines 4868--4877 \T1/qtm/m/n/10 ^^PNew_Reported_Infections^^Q, ^^PNew_Severe_Cases^^Q, ^^PPCR_Ga metocyte_Prevalence^^Q, Underfull \hbox (badness 10000) in paragraph at lines 4868--4877 \T1/qtm/m/n/10 ^^PPCR_Parasite_Prevalence^^Q, ^^PPfHRP2_Prevalence^^Q, ^^PPop-u -la-tion^^Q, ^^PPreva- Underfull \hbox (badness 10000) in paragraph at lines 4868--4877 \T1/qtm/m/n/10 lence^^Q, ^^PRain-fall^^Q, ^^PRel-a-tive_Humidity^^Q, ^^PTrue_Pr evalence^^Q De-faults: [67] [68] [69] [70] Overfull \hbox (4.70392pt too wide) in paragraph at lines 5326--5326 \T1/qtm/m/it/10 ify_by_clinical_symptoms: [71] Overfull \hbox (38.49373pt too wide) in paragraph at lines 5372--5372 \T1/qtm/m/it/10 drug_resistant_strings: Overfull \hbox (63.94373pt too wide) in paragraph at lines 5372--5372 \T1/qtm/m/it/10 drug_resistant_statistic_type: Overfull \hbox (156.42372pt too wide) in paragraph at lines 5372--5372 \TS1/qtm/m/it/10 '\T1/qtm/m/it/10 NUM_PEOPLE_WITH_RESISTANT_INFECTION\TS1/qtm/m /it/10 '\T1/qtm/m/n/10 , Overfull \hbox (18.46376pt too wide) in paragraph at lines 5372--5372 \T1/qtm/m/it/10 ip_key_to_collect: Overfull \hbox (4.78375pt too wide) in paragraph at lines 5372--5372 \T1/qtm/m/it/10 ify_by_gender: [72] [73] Underfull \hbox (badness 7308) in paragraph at lines 5533--5535 []\T1/txtt/bx/n/10 event_list \T1/qtm/m/n/10 ^^U a list of events to record or ex-clude, de-pend-ing on value of [74] [75] [76] Underfull \hbox (badness 10000) in paragraph at lines 5785--5791 []\T1/qtm/m/n/10 The sim-ple malaria trans-mis-sion re-port (Re-port-Sim-ple-Ma lar-i-a-Trans-mis-sion-J-SON.json) is a JSON- [77] [78] [79] Overfull \hbox (3.4238pt too wide) in paragraph at lines 6123--6123 \T1/qtm/m/it/10 ing.Optional[str] [80] Underfull \hbox (badness 10000) in paragraph at lines 6269--6272 []\T1/qtm/m/n/10 Sets up the de-fault pa-ram-e-ters for par-a-site ge-net-ics s im-u-la-tions Malaria_Model = [81] Underfull \hbox (badness 6510) in paragraph at lines 6283--6285 []\T1/txtt/bx/n/10 var_gene_randomness_type \T1/qtm/m/n/10 ^^U pos-si-ble val-u es are ^^PFIXED_NEIGHBORHOOD^^Q, [82] Underfull \hbox (badness 10000) in paragraph at lines 6433--6437 \T1/qtm/m/n/10 sim-u-la-tion.task.config.parameters.Vector_Species_Params[i][^^ PHabitats^^Q][j][^^PMax_Larval_Capacity^^Q] = [83] [84] [85] Overfull \vbox (0.52191pt too high) detected at line 6853 [86] [87] [88] Underfull \hbox (badness 10000) in paragraph at lines 7056--7060 \T1/qtm/m/n/10 sim-u-la-tion.task.config.parameters.Vector_Species_Params[i][^^ PHabitats^^Q][j][^^PMax_Larval_Capacity^^Q] = [89] [90] Chapter 3. [91] [92] [93] Overfull \hbox (15.08487pt too wide) in paragraph at lines 7311--7313 \T1/qtm/m/n/10 You need to spec-ify `^^Uindex-url = [][]$https : /$[][]/@idmod.org:@packages.idmod.org/api/pypi/pypi- [94] [95] [96] [97] [98] [99] [100] Overfull \hbox (19.37178pt too wide) in paragraph at lines 7660--7661 []\T1/txtt/m/n/10 emodpy_malaria.demographics.MalariaDemographics\T1/qtm/m/n/10 , Overfull \hbox (45.6217pt too wide) in paragraph at lines 7665--7666 []\T1/txtt/m/n/10 emodpy_malaria.interventions.community_health_worker\T1/qtm/m /n/10 , Underfull \hbox (badness 10000) in paragraph at lines 7668--7669 []\T1/txtt/m/n/10 emodpy_malaria.interventions.drug_campaign\T1/qtm/m/n/10 , Overfull \hbox (3.62183pt too wide) in paragraph at lines 7673--7674 []\T1/txtt/m/n/10 emodpy_malaria.interventions.mosquitorelease\T1/qtm/m/n/10 , Overfull \hbox (3.62183pt too wide) in paragraph at lines 7675--7676 []\T1/txtt/m/n/10 emodpy_malaria.interventions.outdoorrestkill\T1/qtm/m/n/10 , Overfull \hbox (35.12173pt too wide) in paragraph at lines 7676--7677 []\T1/txtt/m/n/10 emodpy_malaria.interventions.scale_larval_habitats\T1/qtm/m/n /10 , Underfull \hbox (badness 10000) in paragraph at lines 7677--7678 []\T1/txtt/m/n/10 emodpy_malaria.interventions.spacespraying\T1/qtm/m/n/10 , Overfull \hbox (14.1218pt too wide) in paragraph at lines 7679--7680 []\T1/txtt/m/n/10 emodpy_malaria.interventions.treatment_seeking\T1/qtm/m/n/10 , Overfull \hbox (40.37172pt too wide) in paragraph at lines 7680--7681 []\T1/txtt/m/n/10 emodpy_malaria.interventions.usage_dependent_bednet\T1/qtm/m/ n/10 , Overfull \hbox (3.62183pt too wide) in paragraph at lines 7683--7684 []\T1/txtt/m/n/10 emodpy_malaria.malaria_vector_species_params\T1/qtm/m/n/10 , [101] (./institute-for-disease-modeling-emodpy-malaria.ind [102] Underfull \hbox (badness 10000) in paragraph at lines 8--10 []\T1/txtt/m/n/10 add_campaign_event() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 8--10 \T1/qtm/m/it/10 emodpy_malaria.interventions.common\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 10--12 []\T1/txtt/m/n/10 add_campaign_event() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 10--12 \T1/qtm/m/it/10 emodpy_malaria.interventions.outbreak\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 12--14 []\T1/txtt/m/n/10 add_community_health_worker() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (47.96248pt too wide) in paragraph at lines 12--14 \T1/qtm/m/it/10 emodpy_malaria.interventions.community_health_worker\T1/qtm/m/n /10 ), Underfull \hbox (badness 10000) in paragraph at lines 14--16 []\T1/txtt/m/n/10 add_diagnostic_survey() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 14--16 \T1/qtm/m/it/10 emodpy_malaria.interventions.diag_survey\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 16--18 []\T1/txtt/m/n/10 add_drug_campaign() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Overfull \hbox (4.22249pt too wide) in paragraph at lines 16--18 \T1/qtm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 18--20 []\T1/txtt/m/n/10 add_drug_resistance() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Underfull \hbox (badness 10000) in paragraph at lines 20--22 []\T1/txtt/m/n/10 add_drug_status_report() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m od-ule Underfull \hbox (badness 10000) in paragraph at lines 22--24 []\T1/txtt/m/n/10 add_event_recorder() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 24--26 []\T1/txtt/m/n/10 add_fMDA() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (4.22249pt too wide) in paragraph at lines 24--26 \T1/qtm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 26--28 []\T1/txtt/m/n/10 add_genes_and_alleles() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 28--30 []\T1/txtt/m/n/10 add_habitat_reduction_event() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (27.56747pt too wide) in paragraph at lines 28--30 \T1/qtm/m/it/10 emodpy_malaria.interventions.scale_larval_habitats\T1/qtm/m/n/1 0 ), Underfull \hbox (badness 10000) in paragraph at lines 30--32 []\T1/txtt/m/n/10 add_human_migration_tracking() \T1/qtm/m/n/10 (\T1/qtm/m/it/1 0 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 32--34 []\T1/txtt/m/n/10 add_initial_vectors_per_species() Overfull \hbox (127.35252pt too wide) in paragraph at lines 32--34 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.demographics.MalariaDemographics .MalariaDemographics Underfull \hbox (badness 10000) in paragraph at lines 34--36 []\T1/txtt/m/n/10 add_initial_vectors_per_species_from_csv() Overfull \hbox (127.35252pt too wide) in paragraph at lines 34--36 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.demographics.MalariaDemographics .MalariaDemographics Underfull \hbox (badness 10000) in paragraph at lines 36--38 []\T1/txtt/m/n/10 add_insecticide_resistance() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 38--40 []\T1/txtt/m/n/10 add_insecticide_resistance() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 40--42 []\T1/txtt/m/n/10 add_itn_scheduled() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 42--44 []\T1/txtt/m/n/10 add_itn_triggered() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 44--46 []\T1/txtt/m/n/10 add_larval_habitat_multiplier() Overfull \hbox (127.35252pt too wide) in paragraph at lines 44--46 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.demographics.MalariaDemographics .MalariaDemographics Underfull \hbox (badness 10000) in paragraph at lines 46--48 []\T1/txtt/m/n/10 add_larvicide() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 46--48 \T1/qtm/m/it/10 emodpy_malaria.interventions.larvicide\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 48--50 []\T1/txtt/m/n/10 add_malaria_immunity_report() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 50--52 []\T1/txtt/m/n/10 add_malaria_patient_json_report() \T1/qtm/m/n/10 (\T1/qtm/m/i t/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 52--54 []\T1/txtt/m/n/10 add_malaria_sql_report() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m od-ule Underfull \hbox (badness 10000) in paragraph at lines 54--56 []\T1/txtt/m/n/10 add_malaria_summary_report() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 56--58 []\T1/txtt/m/n/10 add_malaria_survey_analyzer() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 58--60 []\T1/txtt/m/n/10 add_malaria_transmission_report() \T1/qtm/m/n/10 (\T1/qtm/m/i t/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 60--62 []\T1/txtt/m/n/10 add_MDA() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (4.22249pt too wide) in paragraph at lines 60--62 \T1/qtm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 62--64 []\T1/txtt/m/n/10 add_MSAT() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (4.22249pt too wide) in paragraph at lines 62--64 \T1/qtm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 64--66 []\T1/txtt/m/n/10 add_mutation() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 66--68 []\T1/txtt/m/n/10 add_outbreak_individual() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 66--68 \T1/qtm/m/it/10 emodpy_malaria.interventions.outbreak\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 68--70 []\T1/txtt/m/n/10 add_outbreak_malaria_genetics() \T1/qtm/m/n/10 (\T1/qtm/m/it/ 10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 70--72 []\T1/txtt/m/n/10 add_outbreak_malaria_var_genes() \T1/qtm/m/n/10 (\T1/qtm/m/it /10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 72--74 []\T1/txtt/m/n/10 add_outdoorrestkill() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Underfull \hbox (badness 10000) in paragraph at lines 74--76 []\T1/txtt/m/n/10 add_report_event_counter() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule [103] Underfull \hbox (badness 10000) in paragraph at lines 78--80 []\T1/txtt/m/n/10 add_report_intervention_pop_avg() \T1/qtm/m/n/10 (\T1/qtm/m/i t/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 80--82 []\T1/txtt/m/n/10 add_report_malaria_filtered() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 82--84 []\T1/txtt/m/n/10 add_report_malaria_filtered_intrahost() \T1/qtm/m/n/10 (\T1/q tm/m/it/10 in Underfull \hbox (badness 10000) in paragraph at lines 84--86 []\T1/txtt/m/n/10 add_report_node_demographics() \T1/qtm/m/n/10 (\T1/qtm/m/it/1 0 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 86--88 []\T1/txtt/m/n/10 add_report_node_demographics_malaria() \T1/qtm/m/n/10 (\T1/qt m/m/it/10 in Overfull \hbox (16.87178pt too wide) in paragraph at lines 88--90 []\T1/txtt/m/n/10 add_report_node_demographics_malaria_genetics() Underfull \hbox (badness 10000) in paragraph at lines 90--92 []\T1/txtt/m/n/10 add_report_vector_genetics() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 92--94 []\T1/txtt/m/n/10 add_report_vector_migration() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 94--96 []\T1/txtt/m/n/10 add_report_vector_stats() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 96--98 []\T1/txtt/m/n/10 add_report_vector_stats_malaria_genetics() Underfull \hbox (badness 10000) in paragraph at lines 98--100 []\T1/txtt/m/n/10 add_rfMDA() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (4.22249pt too wide) in paragraph at lines 98--100 \T1/qtm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 100--102 []\T1/txtt/m/n/10 add_rfMSAT() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (4.22249pt too wide) in paragraph at lines 100--102 \T1/qtm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 102--104 []\T1/txtt/m/n/10 add_scale_larval_habitats() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 i n mod-ule Overfull \hbox (27.56747pt too wide) in paragraph at lines 102--104 \T1/qtm/m/it/10 emodpy_malaria.interventions.scale_larval_habitats\T1/qtm/m/n/1 0 ), Underfull \hbox (badness 10000) in paragraph at lines 104--106 []\T1/txtt/m/n/10 add_scheduled_antimalarial_drug() \T1/qtm/m/n/10 (\T1/qtm/m/i t/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 106--108 []\T1/txtt/m/n/10 add_scheduled_input_eir() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 106--108 \T1/qtm/m/it/10 emodpy_malaria.interventions.inputeir\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 108--110 []\T1/txtt/m/n/10 add_scheduled_irs_housing_modification() \T1/qtm/m/n/10 (\T1/ qtm/m/it/10 in Underfull \hbox (badness 10000) in paragraph at lines 110--112 []\T1/txtt/m/n/10 add_scheduled_ivermectin() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 110--112 \T1/qtm/m/it/10 emodpy_malaria.interventions.ivermectin\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 112--114 []\T1/txtt/m/n/10 add_scheduled_mosquito_release() \T1/qtm/m/n/10 (\T1/qtm/m/it /10 in mod-ule Overfull \hbox (5.84247pt too wide) in paragraph at lines 112--114 \T1/qtm/m/it/10 emodpy_malaria.interventions.mosquitorelease\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 114--116 []\T1/txtt/m/n/10 add_scheduled_space_spraying() \T1/qtm/m/n/10 (\T1/qtm/m/it/1 0 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 114--116 \T1/qtm/m/it/10 emodpy_malaria.interventions.spacespraying\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 116--118 []\T1/txtt/m/n/10 add_scheduled_sugar_trap() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 116--118 \T1/qtm/m/it/10 emodpy_malaria.interventions.sugartrap\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 118--120 []\T1/txtt/m/n/10 add_scheduled_usage_dependent_bednet() \T1/qtm/m/n/10 (\T1/qt m/m/it/10 in Overfull \hbox (72.8525pt too wide) in paragraph at lines 118--120 \T1/qtm/m/it/10 mod-ule emodpy_malaria.interventions.usage_dependent_bednet\T1/ qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 120--122 []\T1/txtt/m/n/10 add_scheduled_vaccine() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 120--122 \T1/qtm/m/it/10 emodpy_malaria.interventions.vaccine\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 124--126 []\T1/txtt/m/n/10 add_species() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 126--128 []\T1/txtt/m/n/10 add_species() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 128--130 []\T1/txtt/m/n/10 add_species_drivers() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Underfull \hbox (badness 10000) in paragraph at lines 130--131 []\T1/txtt/m/n/10 add_trait() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 131--133 []\T1/txtt/m/n/10 add_treatment_seeking() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule Overfull \hbox (13.81248pt too wide) in paragraph at lines 131--133 \T1/qtm/m/it/10 emodpy_malaria.interventions.treatment_seeking\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 133--135 \T1/qtm/m/it/10 ule emodpy_malaria.interventions.common\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 135--137 []\T1/txtt/m/n/10 add_triggered_irs_housing_modification() \T1/qtm/m/n/10 (\T1/ qtm/m/it/10 in Underfull \hbox (badness 10000) in paragraph at lines 137--139 []\T1/txtt/m/n/10 add_triggered_ivermectin() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 137--139 \T1/qtm/m/it/10 emodpy_malaria.interventions.ivermectin\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 139--141 []\T1/txtt/m/n/10 add_triggered_usage_dependent_bednet() \T1/qtm/m/n/10 (\T1/qt m/m/it/10 in Overfull \hbox (72.8525pt too wide) in paragraph at lines 139--141 \T1/qtm/m/it/10 mod-ule emodpy_malaria.interventions.usage_dependent_bednet\T1/ qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 141--143 []\T1/txtt/m/n/10 add_triggered_vaccine() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 141--143 \T1/qtm/m/it/10 emodpy_malaria.interventions.vaccine\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 143--145 []\T1/txtt/m/n/10 add_vector_habitat_report() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 i n mod-ule Underfull \hbox (badness 10000) in paragraph at lines 145--147 []\T1/txtt/m/n/10 adherent_drug() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 145--147 \T1/qtm/m/it/10 emodpy_malaria.interventions.adherentdrug\T1/qtm/m/n/10 ), Overfull \hbox (52.95236pt too wide) in paragraph at lines 150--152 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.MalariaImmunityReport Overfull \hbox (66.65236pt too wide) in paragraph at lines 152--154 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.MalariaPatientJSONReport Overfull \hbox (27.96236pt too wide) in paragraph at lines 154--156 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.MalariaSqlReport Overfull \hbox (53.25237pt too wide) in paragraph at lines 156--158 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.MalariaSummaryReport Overfull \hbox (73.90236pt too wide) in paragraph at lines 158--160 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.MalariaSurveyJSONAnalyzer Overfull \hbox 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emodpy_malaria.interventions.outdoorrestkill Overfull \hbox (32.62173pt too wide) in paragraph at lines 238--239 []\T1/txtt/m/n/10 emodpy_malaria.interventions.scale_larval_habitats Overfull \hbox (11.6218pt too wide) in paragraph at lines 244--245 []\T1/txtt/m/n/10 emodpy_malaria.interventions.treatment_seeking Overfull \hbox (37.87172pt too wide) in paragraph at lines 246--247 []\T1/txtt/m/n/10 emodpy_malaria.interventions.usage_dependent_bednet Overfull \hbox (1.12183pt too wide) in paragraph at lines 252--253 []\T1/txtt/m/n/10 emodpy_malaria.malaria_vector_species_params Underfull \hbox (badness 10000) in paragraph at lines 263--265 []\T1/txtt/m/n/10 fmda_cfg() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (4.22249pt too wide) in paragraph at lines 263--265 \T1/qtm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 265--267 []\T1/txtt/m/n/10 from_csv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule 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emodpy_malaria.demographics.MalariaDemographics\T1/qtm/m/n/10 ) , [105] Underfull \hbox (badness 10000) in paragraph at lines 276--278 []\T1/txtt/m/n/10 get_drug_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 278--280 []\T1/txtt/m/n/10 get_file_from_http() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 280--282 []\T1/txtt/m/n/10 get_species_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 282--284 []\T1/txtt/m/n/10 get_species_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 287--289 []\T1/txtt/m/n/10 irs_configuration() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 292--294 []\T1/txtt/m/n/10 MalariaDemographics \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (36.1975pt too wide) in paragraph at lines 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wide) in paragraph at lines 309--310 []| \T1/txtt/m/n/10 emodpy_malaria.interventions.adherentdrug\T1/qtm/m/n/10 , Overfull \hbox (65.6217pt too wide) in paragraph at lines 312--313 []| \T1/txtt/m/n/10 emodpy_malaria.interventions.community_health_worker\T1/qtm /m/n/10 , Overfull \hbox (2.62189pt too wide) in paragraph at lines 313--314 []| \T1/txtt/m/n/10 emodpy_malaria.interventions.diag_survey\T1/qtm/m/n/10 , Overfull \hbox (13.12186pt too wide) in paragraph at lines 315--316 []| \T1/txtt/m/n/10 emodpy_malaria.interventions.drug_campaign\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 318--319 []| \T1/txtt/m/n/10 emodpy_malaria.interventions.ivermectin\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 319--320 []| \T1/txtt/m/n/10 emodpy_malaria.interventions.larvicide\T1/qtm/m/n/10 , Overfull \hbox (23.62183pt too wide) in paragraph at lines 320--321 []| \T1/txtt/m/n/10 emodpy_malaria.interventions.mosquitorelease\T1/qtm/m/n/10 , Overfull 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Overfull \hbox (57.31381pt too wide) in paragraph at lines 258--258 \T1/qtm/m/it/10 clude_biting_heterogeneity=True\T1/txtt/m/n/10 )| Underfull \hbox (badness 5274) in paragraph at lines 305--308 []\T1/qtm/m/n/10 Set ini-tial risk for low-medium trans-mis-sion set-tings per: [][]$https : / / wiki . idmod . org / display / MAL / [5] Overfull \hbox (20.56392pt too wide) in paragraph at lines 413--413 \T1/qtm/m/it/10 clude_biting_heterogeneity=True\T1/txtt/m/n/10 )| [6] Overfull \hbox (35.49402pt too wide) in paragraph at lines 457--457 \T1/qtm/m/it/10 pop_filename_out=\TS1/qtm/m/it/10 '\T1/qtm/m/it/10 spatial_grid ded_pop_dir\TS1/qtm/m/it/10 '\T1/qtm/m/n/10 , [7] [8] [9] Underfull \hbox (badness 10000) in paragraph at lines 722--725 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 732--736 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, Underfull \hbox (badness 10000) in paragraph at lines 732--736 \T1/qtm/b/n/10 erty_Restrictions_Within_Node\T1/qtm/m/n/10 . In the for-mat \T1 /txtt/m/n/10 [{ "BitingRisk":"High"}, [10] Underfull \hbox (badness 10000) in paragraph at lines 867--870 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with [11] Underfull \hbox (badness 10000) in paragraph at lines 877--881 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, Underfull \hbox (badness 10000) in paragraph at lines 877--881 \T1/qtm/b/n/10 erty_Restrictions_Within_Node\T1/qtm/m/n/10 . In the for-mat \T1 /txtt/m/n/10 [{ "BitingRisk":"High"}, [12] Overfull \hbox (27.94388pt too wide) in paragraph at lines 974--974 \T1/qtm/m/it/10 timesteps_between_repetitions: Overfull \hbox (8.55386pt too wide) in paragraph at lines 974--974 \T1/qtm/m/it/10 ind_property_restrictions: Overfull \hbox (4.09389pt too wide) in paragraph at lines 974--974 \T1/qtm/m/it/10 out_on_first_occurrence: [13] Underfull \hbox (badness 10000) in paragraph at lines 1015--1018 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 1025--1028 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [14] Underfull \hbox (badness 10000) in paragraph at lines 1107--1110 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 1117--1120 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, Overfull \hbox (31.3137pt too wide) in paragraph at lines 1159--1159 \T1/qtm/m/it/10 ger_condition_list: Overfull \hbox (29.93373pt too wide) in paragraph at lines 1159--1159 \T1/qtm/m/it/10 graphic_coverage: Overfull \hbox (61.05371pt too wide) in paragraph at lines 1159--1159 \T1/qtm/m/it/10 ind_property_restrictions: Overfull \hbox (9.43373pt too wide) in paragraph at lines 1159--1159 \T1/qtm/m/it/10 get_age_min: Overfull \hbox (11.09373pt too wide) in paragraph at lines 1159--1159 \T1/qtm/m/it/10 get_age_max: Overfull \hbox (2.46371pt too wide) in paragraph at lines 1159--1159 \T1/qtm/m/it/10 get_gender: Overfull \hbox (6.86372pt too wide) in paragraph at lines 1159--1159 \T1/qtm/m/it/10 tial_amount: Overfull \hbox (42.41373pt too wide) in paragraph at lines 1159--1159 \T1/qtm/m/it/10 amount_in_shipment: Overfull \hbox (7.99374pt too wide) in paragraph at lines 1159--1159 \T1/qtm/m/it/10 2147480000\T1/qtm/m/n/10 , Overfull \hbox (59.27374pt too wide) in paragraph at lines 1159--1159 \T1/qtm/m/it/10 days_between_shipments: Overfull \hbox (11.68375pt too wide) in paragraph at lines 1159--1159 \T1/qtm/m/it/10 3.40282e+38\T1/qtm/m/n/10 , Overfull \hbox (3.82375pt too wide) in paragraph at lines 1159--1159 \T1/qtm/m/it/10 tion_config: Overfull \hbox (1.05374pt too wide) in paragraph at lines 1159--1159 \T1/qtm/m/it/10 tional[][][any] Overfull \hbox (60.84373pt too wide) in paragraph at lines 1159--1159 \T1/qtm/m/it/10 max_distributed_per_day: Overfull \hbox (7.99374pt too wide) in paragraph at lines 1159--1159 \T1/qtm/m/it/10 2147480000\T1/qtm/m/n/10 , Overfull \hbox (0.53372pt too wide) in paragraph at lines 1159--1159 \T1/qtm/m/it/10 max_stock: Overfull \hbox (7.99374pt too wide) in paragraph at lines 1159--1159 \T1/qtm/m/it/10 2147480000\T1/qtm/m/n/10 , Overfull \hbox (2.71375pt too wide) in paragraph at lines 1159--1159 \T1/qtm/m/it/10 ing_period: [15] Overfull \vbox (11.56755pt too high) has occurred while \output is active [16] Underfull \hbox (badness 10000) in paragraph at lines 1192--1195 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [17] Underfull \hbox (badness 10000) in paragraph at lines 1304--1309 []\T1/txtt/bx/n/10 diagnostic_type \T1/qtm/m/n/10 ^^U Type of malaria di-ag-nos -tic used. De-fault is [18] Underfull \hbox (badness 10000) in paragraph at lines 1360--1364 []\T1/qtm/m/n/10 In ga-me-to-cytes/microliter, use mea-sure- Underfull \hbox (badness 10000) in paragraph at lines 1388--1391 []\T1/txtt/bx/n/10 measurement_sensitivity \T1/qtm/m/n/10 ^^U Set-ting for \T1/ qtm/b/n/10 Mea-sure-ment_Sensitivity \T1/qtm/m/n/10 in Underfull \hbox (badness 10000) in paragraph at lines 1417--1423 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U List of In-di-v id-u-al-Prop-erty key:value Underfull \hbox (badness 10000) in paragraph at lines 1417--1423 \T1/qtm/m/n/10 pairs that in-di-vid-u-als must have to re-ceive the di-ag-nos-t ic in-ter-ven- Underfull \hbox (badness 10000) in paragraph at lines 1417--1423 \T1/qtm/m/n/10 tion. For ex-am-ple, \T1/txtt/m/n/10 [{"IndividualProperty1":"Pr opertyValue1"}, Underfull \hbox (badness 10000) in paragraph at lines 1425--1430 []\T1/txtt/bx/n/10 disqualifying_properties \T1/qtm/m/n/10 ^^U List of In-di-vi d-u-al-Prop-erty Underfull \hbox (badness 10000) in paragraph at lines 1425--1430 \T1/qtm/m/n/10 key:value pairs that cause an in-ter-ven-tion to be aborted. For Underfull \hbox (badness 10000) in paragraph at lines 1425--1430 \T1/qtm/m/n/10 ex-am-ple, \T1/txtt/m/n/10 [{"IndividualProperty1":"PropertyValu e1"}, [19] Underfull \hbox (badness 10000) in paragraph at lines 1453--1457 []\T1/txtt/bx/n/10 expire_recent_drugs \T1/qtm/m/n/10 ^^U Adds \T1/txtt/m/n/10 [{"DrugStatus:None"}] \T1/qtm/m/n/10 to \T1/qtm/b/n/10 Prop- Overfull \hbox (1.69395pt too wide) in paragraph at lines 1474--1474 \T1/qtm/m/it/10 timesteps_between_repetitions: Underfull \hbox (badness 10000) in paragraph at lines 1505--1508 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 1515--1518 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [20] Overfull \hbox (72.89397pt too wide) in paragraph at lines 1634--1634 \T1/qtm/m/it/10 ing_drugs_event_name=\TS1/qtm/m/it/10 '\T1/qtm/m/it/10 Received _Campaign_Drugs\TS1/qtm/m/it/10 '\T1/txtt/m/n/10 )| [21] [22] (/usr/share/texlive/texmf-dist/tex/latex/txfonts/ts1txtt.fd) [23] Overfull \hbox (25.23418pt too wide) in paragraph at lines 1863--1863 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.BroadcastEvent] Overfull \hbox (54.63417pt too wide) in paragraph at lines 1863--1863 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.PropertyValueChanger] Overfull \hbox (30.48416pt too wide) in paragraph at lines 1880--1880 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.BroadcastEvent] Overfull \hbox (59.88416pt too wide) in paragraph at lines 1880--1880 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.PropertyValueChanger] [24] Overfull \hbox (30.48416pt too wide) in paragraph at lines 1897--1897 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.BroadcastEvent] Overfull \hbox (59.88416pt too wide) in paragraph at lines 1897--1897 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.PropertyValueChanger] Underfull \hbox (badness 10000) in paragraph at lines 1898--1902 []\T1/qtm/m/n/10 Add an fMDA (fo-cal mass drug ad-min-is-tra-tion) drug in-ter- ven-tion to your cam-paign. See Overfull \hbox (40.98413pt too wide) in paragraph at lines 1914--1914 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.BroadcastEvent] Overfull \hbox (70.38412pt too wide) in paragraph at lines 1914--1914 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.PropertyValueChanger] [25] Overfull \hbox (35.73415pt too wide) in paragraph at lines 1931--1931 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.BroadcastEvent] Overfull \hbox (65.13414pt too wide) in paragraph at lines 1931--1931 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.PropertyValueChanger] [26] [27] Overfull \hbox (26.20386pt too wide) in paragraph at lines 2088--2088 \T1/qtm/m/it/10 killing_decay_time_constant: Overfull \hbox (28.42386pt too wide) in paragraph at lines 2088--2088 \T1/qtm/m/it/10 pelling_decay_time_constant: [28] Overfull \hbox (26.20386pt too wide) in paragraph at lines 2167--2167 \T1/qtm/m/it/10 killing_decay_time_constant: Overfull \hbox (28.42386pt too wide) in paragraph at lines 2167--2167 \T1/qtm/m/it/10 pelling_decay_time_constant: [29] [30] [31] Underfull \hbox (badness 10000) in paragraph at lines 2373--2376 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 2383--2386 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [32] [33] Underfull \hbox (badness 10000) in paragraph at lines 2486--2489 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [34] Underfull \hbox (badness 10000) in paragraph at lines 2576--2579 []\T1/txtt/bx/n/10 habitat_target \T1/qtm/m/n/10 ^^U Pos-si-ble val-ues are: ^^ PTEM-PO-RARY_RAINFALL^^Q, ^^PWA- Underfull \hbox (badness 10000) in paragraph at lines 2576--2579 \T1/qtm/m/n/10 TER_VEGETATION^^Q, ^^PHU-MAN_POPULATION^^Q, ^^PCON-STANT^^Q, ^^P BRACK- Overfull \hbox (54.1938pt too wide) in paragraph at lines 2628--2628 \T1/qtm/m/it/10 timesteps_between_repetitions: Overfull \hbox (1.7138pt too wide) in paragraph at lines 2628--2628 \T1/qtm/m/it/10 leased_infectious: [35] Underfull \hbox (badness 10000) in paragraph at lines 2649--2652 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 7576) in paragraph at lines 2665--2667 []\T1/txtt/bx/n/10 released_number \T1/qtm/m/n/10 ^^U The num-ber of vec-tors t o re-lease, sets Re-leased_Type = [36] Underfull \hbox (badness 10000) in paragraph at lines 2676--2679 []\T1/txtt/bx/n/10 released_infectious \T1/qtm/m/n/10 ^^U The frac-tion of vec- tors re-leased that Underfull \hbox (badness 10000) in paragraph at lines 2676--2679 \T1/qtm/m/n/10 are to be in-fec-tious. One can only use this fea-ture when Overfull \hbox (16.29498pt too wide) in paragraph at lines 2676--2679 \T1/qtm/m/n/10 `Malaria_Model'!='MALARIA_MECHANISTIC_MODEL_WITH_PARASITE_GENETI CS' [37] Underfull \hbox (badness 10000) in paragraph at lines 2767--2770 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 2777--2780 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, Overfull \hbox (12.19392pt too wide) in paragraph at lines 2830--2830 \T1/qtm/m/it/10 timesteps_between_repetitions: Overfull \hbox (14.34396pt too wide) in paragraph at lines 2830--2830 \T1/qtm/m/it/10 ate_nucleotide_sequence_from: Overfull \hbox (79.13393pt too wide) in paragraph at lines 2830--2830 \T1/qtm/m/it/10 code_allele_frequencies_per_genome_location: Overfull \hbox (118.29388pt too wide) in paragraph at lines 2830--2830 \T1/qtm/m/it/10 drug_resistant_allele_frequencies_per_genome_location: [38] Underfull \hbox (badness 10000) in paragraph at lines 2863--2866 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with [39] Underfull \hbox (badness 10000) in paragraph at lines 2873--2876 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [40] Overfull \hbox (17.44391pt too wide) in paragraph at lines 2964--2964 \T1/qtm/m/it/10 timesteps_between_repetitions: Underfull \hbox (badness 10000) in paragraph at lines 2997--3000 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with [41] Underfull \hbox (badness 10000) in paragraph at lines 3007--3010 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [42] Underfull \hbox (badness 10000) in paragraph at lines 3095--3098 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 3105--3108 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [43] Overfull \hbox (59.44379pt too wide) in paragraph at lines 3194--3194 \T1/qtm/m/it/10 timesteps_between_repetitions: [44] Overfull \hbox (69.94376pt too wide) in paragraph at lines 3271--3271 \T1/qtm/m/it/10 timesteps_between_repetitions: Underfull \hbox (badness 10000) in paragraph at lines 3305--3308 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Overfull \hbox (33.19386pt too wide) in paragraph at lines 3330--3330 \T1/qtm/m/it/10 timesteps_between_repetitions: Overfull \hbox (26.16386pt too wide) in paragraph at lines 3330--3330 \T1/qtm/m/it/10 killing_decay_time_constant: [45] Underfull \hbox (badness 10000) in paragraph at lines 3346--3349 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with [46] Underfull \hbox (badness 10000) in paragraph at lines 3464--3467 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with [47] [48] Overfull \hbox (5.13391pt too wide) in paragraph at lines 3566--3566 \T1/qtm/m/it/10 drug_ineligibility_duration: Underfull \hbox (badness 10000) in paragraph at lines 3586--3591 []\T1/txtt/bx/n/10 is \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 properties of individual s to target with the intervention. Underfull \hbox (badness 6094) in paragraph at lines 3586--3591 \T1/txtt/m/sl/10 Default\T1/qtm/m/n/10 ) ^^U \T1/txtt/m/n/10 [{ "trigger":"NewC linicalCase","coverage":0.8,"agemin":15, Underfull \hbox (badness 10000) in paragraph at lines 3586--3591 \T1/txtt/m/n/10 "agemax":70, "seek":0.4,"rate":0.3},{"trigger":"NewSevereCase", Underfull \hbox (badness 10000) in paragraph at lines 3609--3611 []\T1/txtt/bx/n/10 example, \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 individuals must h ave to receive the Underfull \hbox (badness 10000) in paragraph at lines 3609--3611 \T1/txtt/m/sl/10 intervention. For\T1/qtm/m/n/10 ) ^^U \T1/txtt/m/n/10 ["Indivi dualProperty1:PropertyValue1", [49] Overfull \hbox (39.43362pt too wide) in paragraph at lines 3645--3645 []\T1/qtm/m/it/10 campaign\T1/qtm/m/n/10 , Overfull \hbox (38.10359pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 start_day: Overfull \hbox (8.05362pt too wide) in paragraph at lines 3645--3645 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 1\T1/qtm/m/n/10 , Overfull \hbox (10.26363pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 de- Overfull \hbox (13.04362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 mo- Overfull \hbox (71.93361pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 graphic_coverage: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3645--3645 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 1\T1/qtm/m/n/10 , Overfull \hbox (11.9936pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 tar- Overfull \hbox (84.11362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 get_num_individuals: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3645--3645 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (39.17361pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 tional[][][[][]int[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (36.93362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 node_ids: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3645--3645 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (40.7436pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 tional[][][[][]list[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (103.05359pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 ind_property_restrictions: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3645--3645 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (40.7436pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 tional[][][[][]list[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (8.60362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 in- Overfull \hbox (11.28362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 ter- Overfull \hbox (14.40361pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 ven- Overfull \hbox (43.04362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 tion_name: Overfull \hbox (7.95361pt too wide) in paragraph at lines 3645--3645 [][]\T1/qtm/m/it/10 str[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 = Overfull \hbox (14.07361pt too wide) in paragraph at lines 3645--3645 \TS1/qtm/m/it/10 '\T1/qtm/m/it/10 Us- Overfull \hbox (26.47362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 ageDe- Overfull \hbox (15.26363pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 pen- Overfull \hbox (33.59363pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 dentBed- Overfull \hbox (14.20361pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 net\TS1/qtm/m/it/10 '\T1/qtm/m/n/10 , Overfull \hbox (12.49362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 dis- Overfull \hbox (48.29361pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 card_config: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3645--3645 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (43.61362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 tional[][][[][]dict[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (8.60362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 in- Overfull \hbox (13.59363pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 sec- Overfull \hbox (6.38362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 ti- Overfull \hbox (17.48363pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 cide: Overfull \hbox (7.95361pt too wide) in paragraph at lines 3645--3645 [][]\T1/qtm/m/it/10 str[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 = Overfull \hbox (4.27359pt too wide) in paragraph at lines 3645--3645 \TS1/qtm/m/it/10 ''\T1/qtm/m/n/10 , Overfull \hbox (8.8536pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 re- Overfull \hbox (83.63359pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 pelling_initial_effect: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3645--3645 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (8.8536pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 re- Overfull \hbox (86.9436pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 pelling_box_duration: Overfull \hbox (8.05362pt too wide) in paragraph at lines 3645--3645 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (8.8536pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 re- Overfull \hbox (117.6336pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 pelling_decay_time_constant: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3645--3645 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 = Overfull \hbox (19.99362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 1460\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 block- Overfull \hbox (68.63359pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 ing_initial_effect: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3645--3645 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 = Overfull \hbox (12.49362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 0.9\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 block- Overfull \hbox (71.9436pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 ing_box_duration: Overfull \hbox (8.05362pt too wide) in paragraph at lines 3645--3645 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 block- Overfull \hbox (102.6336pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 ing_decay_time_constant: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3645--3645 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 = Overfull \hbox (14.99362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 730\T1/qtm/m/n/10 , Overfull \hbox (81.41359pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 killing_initial_effect: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3645--3645 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (84.7236pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 killing_box_duration: Overfull \hbox (8.05362pt too wide) in paragraph at lines 3645--3645 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (115.4136pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 killing_decay_time_constant: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3645--3645 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 = Overfull \hbox (19.99362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 1460\T1/qtm/m/n/10 , Overfull \hbox (67.01363pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 age_dependence: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3645--3645 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (43.61362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 tional[][][[][]dict[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (14.15363pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 sea- Overfull \hbox (74.69363pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 sonal_dependence: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3645--3645 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (43.61362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 tional[][][[][]dict[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 = Overfull \hbox (23.6036pt too wide) in paragraph at lines 3645--3645 \T1/qtm/m/it/10 None\T1/txtt/m/n/10 )| [50] Overfull \vbox (635.56755pt too high) has occurred while \output is active [51] Underfull \hbox (badness 6188) in paragraph at lines 3650--3655 []\T1/qtm/m/n/10 box_duration = 0 + de-cay_time_constant > 0 => Waning-Ef-fect- Ex-po-nen-tial Underfull \hbox (badness 10000) in paragraph at lines 3685--3688 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [52] [53] Overfull \hbox (39.43362pt too wide) in paragraph at lines 3833--3833 []\T1/qtm/m/it/10 campaign\T1/qtm/m/n/10 , Overfull \hbox (38.10359pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 start_day: Overfull \hbox (8.05362pt too wide) in paragraph at lines 3833--3833 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 1\T1/qtm/m/n/10 , Overfull \hbox (10.26363pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 de- Overfull \hbox (13.04362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 mo- Overfull \hbox (71.93361pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 graphic_coverage: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3833--3833 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 1\T1/qtm/m/n/10 , Overfull \hbox (36.93362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 node_ids: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3833--3833 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (40.7436pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 tional[][][[][]list[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (103.05359pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 ind_property_restrictions: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3833--3833 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (40.7436pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 tional[][][[][]list[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (15.27362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 trig- Overfull \hbox (73.31358pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 ger_condition_list: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3833--3833 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (40.7436pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 tional[][][[][]list[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (15.27362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 trig- Overfull \hbox (93.44359pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 gered_campaign_delay: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3833--3833 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (46.39362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 tional[][][[][]float[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (10.27362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 lis- Overfull \hbox (12.89363pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 ten- Overfull \hbox (52.80362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 ing_duration: Overfull \hbox (8.05362pt too wide) in paragraph at lines 3833--3833 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 = Overfull \hbox (0.82362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 - Overfull \hbox (4.99362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 1\T1/qtm/m/n/10 , Overfull \hbox (8.60362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 in- Overfull \hbox (11.28362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 ter- Overfull \hbox (14.40361pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 ven- Overfull \hbox (43.04362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 tion_name: Overfull \hbox (7.95361pt too wide) in paragraph at lines 3833--3833 [][]\T1/qtm/m/it/10 str[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 = Overfull \hbox (14.07361pt too wide) in paragraph at lines 3833--3833 \TS1/qtm/m/it/10 '\T1/qtm/m/it/10 Us- Overfull \hbox (26.47362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 ageDe- Overfull \hbox (15.26363pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 pen- Overfull \hbox (33.59363pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 dentBed- Overfull \hbox (14.20361pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 net\TS1/qtm/m/it/10 '\T1/qtm/m/n/10 , Overfull \hbox (12.49362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 dis- Overfull \hbox (48.29361pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 card_config: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3833--3833 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (43.61362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 tional[][][[][]dict[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (8.60362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 in- Overfull \hbox (13.59363pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 sec- Overfull \hbox (6.38362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 ti- Overfull \hbox (17.48363pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 cide: Overfull \hbox (7.95361pt too wide) in paragraph at lines 3833--3833 [][]\T1/qtm/m/it/10 str[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 = Overfull \hbox (4.27359pt too wide) in paragraph at lines 3833--3833 \TS1/qtm/m/it/10 ''\T1/qtm/m/n/10 , Overfull \hbox (8.8536pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 re- Overfull \hbox (83.63359pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 pelling_initial_effect: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3833--3833 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (8.8536pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 re- Overfull \hbox (86.9436pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 pelling_box_duration: Overfull \hbox (8.05362pt too wide) in paragraph at lines 3833--3833 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (8.8536pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 re- Overfull \hbox (117.6336pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 pelling_decay_time_constant: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3833--3833 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 = Overfull \hbox (19.99362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 1460\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 block- Overfull \hbox (68.63359pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 ing_initial_effect: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3833--3833 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 = Overfull \hbox (12.49362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 0.9\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 block- Overfull \hbox (71.9436pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 ing_box_duration: Overfull \hbox (8.05362pt too wide) in paragraph at lines 3833--3833 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 block- Overfull \hbox (102.6336pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 ing_decay_time_constant: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3833--3833 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 = Overfull \hbox (14.99362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 730\T1/qtm/m/n/10 , Overfull \hbox (81.41359pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 killing_initial_effect: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3833--3833 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (84.7236pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 killing_box_duration: Overfull \hbox (8.05362pt too wide) in paragraph at lines 3833--3833 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (115.4136pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 killing_decay_time_constant: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3833--3833 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 = Overfull \hbox (19.99362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 1460\T1/qtm/m/n/10 , Overfull \hbox (67.01363pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 age_dependence: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3833--3833 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (43.61362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 tional[][][[][]dict[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (14.15363pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 sea- Overfull \hbox (74.69363pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 sonal_dependence: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3833--3833 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (43.61362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 tional[][][[][]dict[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 = Overfull \hbox (23.6036pt too wide) in paragraph at lines 3833--3833 \T1/qtm/m/it/10 None\T1/txtt/m/n/10 )| [54] Overfull \vbox (775.56999pt too high) has occurred while \output is active [55] Underfull \hbox (badness 6188) in paragraph at lines 3838--3843 []\T1/qtm/m/n/10 box_duration = 0 + de-cay_time_constant > 0 => Waning-Ef-fect- Ex-po-nen-tial Underfull \hbox (badness 10000) in paragraph at lines 3868--3871 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [56] Overfull \hbox (88.19377pt too wide) in paragraph at lines 4030--4030 \T1/qtm/m/it/10 name=\TS1/qtm/m/it/10 '\T1/qtm/m/it/10 UsageDependentBednet.jso n\TS1/qtm/m/it/10 '\T1/txtt/m/n/10 )| [57] Underfull \hbox (badness 10000) in paragraph at lines 4074--4077 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 4084--4087 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [58] [59] Underfull \hbox (badness 10000) in paragraph at lines 4187--4190 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 4197--4200 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [60] Overfull \hbox (31.91403pt too wide) in paragraph at lines 4299--4299 \T1/qtm/m/it/10 cific_genome_combinations_for_stratification: [61] Underfull \hbox (badness 5119) in paragraph at lines 4349--4356 \T1/qtm/m/n/10 0 is sim-i-lar to 0-1). De-pends on: ^^PGENOME^^Q, ^^PSPE-CIFIC_ GENOME^^Q spe- [62] [63] [64] Overfull \hbox (2.92401pt too wide) in paragraph at lines 4672--4672 \T1/qtm/m/it/10 clude_30day_avg_infection_duration: [65] Overfull \hbox (6.20389pt too wide) in paragraph at lines 4745--4745 \T1/qtm/m/it/10 must_have_ip_key_value: Overfull \hbox (1.87387pt too wide) in paragraph at lines 4745--4745 \T1/qtm/m/it/10 must_have_intervention: Overfull \hbox (55.41386pt too wide) in paragraph at lines 4745--4745 \T1/qtm/m/it/10 clude_30day_avg_infection_duration: [66] Underfull \hbox (badness 5119) in paragraph at lines 4868--4877 \T1/qtm/m/n/10 put for. Avail-able chan-nels are: ^^PAdult_Vectors^^Q, ^^PAir_T emperature^^Q, ^^PBirths^^Q, Underfull \hbox (badness 10000) in paragraph at lines 4868--4877 \T1/qtm/m/n/10 ^^PBlood_Smear_Gametocyte_Prevalence^^Q, ^^PBlood_Smear_Parasite _Prevalence^^Q, Underfull \hbox (badness 10000) in paragraph at lines 4868--4877 \T1/qtm/m/n/10 ^^PCam-paign_Cost^^Q, ^^PDaily_Bites_Per_Human^^Q, ^^PDaily_EIR^ ^Q, ^^PDis-ease_Deaths^^Q, Underfull \hbox (badness 10000) in paragraph at lines 4868--4877 \T1/qtm/m/n/10 ^^PNew_Reported_Infections^^Q, ^^PNew_Severe_Cases^^Q, ^^PPCR_Ga metocyte_Prevalence^^Q, Underfull \hbox (badness 10000) in paragraph at lines 4868--4877 \T1/qtm/m/n/10 ^^PPCR_Parasite_Prevalence^^Q, ^^PPfHRP2_Prevalence^^Q, ^^PPop-u -la-tion^^Q, ^^PPreva- Underfull \hbox (badness 10000) in paragraph at lines 4868--4877 \T1/qtm/m/n/10 lence^^Q, ^^PRain-fall^^Q, ^^PRel-a-tive_Humidity^^Q, ^^PTrue_Pr evalence^^Q De-faults: [67] [68] [69] [70] Overfull \hbox (4.70392pt too wide) in paragraph at lines 5326--5326 \T1/qtm/m/it/10 ify_by_clinical_symptoms: [71] Overfull \hbox (38.49373pt too wide) in paragraph at lines 5372--5372 \T1/qtm/m/it/10 drug_resistant_strings: Overfull \hbox (63.94373pt too wide) in paragraph at lines 5372--5372 \T1/qtm/m/it/10 drug_resistant_statistic_type: Overfull \hbox (156.42372pt too wide) in paragraph at lines 5372--5372 \TS1/qtm/m/it/10 '\T1/qtm/m/it/10 NUM_PEOPLE_WITH_RESISTANT_INFECTION\TS1/qtm/m /it/10 '\T1/qtm/m/n/10 , Overfull \hbox (18.46376pt too wide) in paragraph at lines 5372--5372 \T1/qtm/m/it/10 ip_key_to_collect: Overfull \hbox (4.78375pt too wide) in paragraph at lines 5372--5372 \T1/qtm/m/it/10 ify_by_gender: [72] [73] Underfull \hbox (badness 7308) in paragraph at lines 5533--5535 []\T1/txtt/bx/n/10 event_list \T1/qtm/m/n/10 ^^U a list of events to record or ex-clude, de-pend-ing on value of [74] [75] [76] Underfull \hbox (badness 10000) in paragraph at lines 5785--5791 []\T1/qtm/m/n/10 The sim-ple malaria trans-mis-sion re-port (Re-port-Sim-ple-Ma lar-i-a-Trans-mis-sion-J-SON.json) is a JSON- [77] [78] [79] Overfull \hbox (3.4238pt too wide) in paragraph at lines 6123--6123 \T1/qtm/m/it/10 ing.Optional[str] [80] Underfull \hbox (badness 10000) in paragraph at lines 6269--6272 []\T1/qtm/m/n/10 Sets up the de-fault pa-ram-e-ters for par-a-site ge-net-ics s im-u-la-tions Malaria_Model = [81] Underfull \hbox (badness 6510) in paragraph at lines 6283--6285 []\T1/txtt/bx/n/10 var_gene_randomness_type \T1/qtm/m/n/10 ^^U pos-si-ble val-u es are ^^PFIXED_NEIGHBORHOOD^^Q, [82] Underfull \hbox (badness 10000) in paragraph at lines 6433--6437 \T1/qtm/m/n/10 sim-u-la-tion.task.config.parameters.Vector_Species_Params[i][^^ PHabitats^^Q][j][^^PMax_Larval_Capacity^^Q] = [83] [84] [85] Overfull \vbox (0.52191pt too high) detected at line 6853 [86] [87] [88] Underfull \hbox (badness 10000) in paragraph at lines 7056--7060 \T1/qtm/m/n/10 sim-u-la-tion.task.config.parameters.Vector_Species_Params[i][^^ PHabitats^^Q][j][^^PMax_Larval_Capacity^^Q] = [89] [90] Chapter 3. [91] [92] [93] Overfull \hbox (15.08487pt too wide) in paragraph at lines 7311--7313 \T1/qtm/m/n/10 You need to spec-ify `^^Uindex-url = [][]$https : /$[][]/@idmod.org:@packages.idmod.org/api/pypi/pypi- [94] [95] [96] [97] [98] [99] [100] Overfull \hbox (19.37178pt too wide) in paragraph at lines 7660--7661 []\T1/txtt/m/n/10 emodpy_malaria.demographics.MalariaDemographics\T1/qtm/m/n/10 , Overfull \hbox (45.6217pt too wide) in paragraph at lines 7665--7666 []\T1/txtt/m/n/10 emodpy_malaria.interventions.community_health_worker\T1/qtm/m /n/10 , Underfull \hbox (badness 10000) in paragraph at lines 7668--7669 []\T1/txtt/m/n/10 emodpy_malaria.interventions.drug_campaign\T1/qtm/m/n/10 , Overfull \hbox (3.62183pt too wide) in paragraph at lines 7673--7674 []\T1/txtt/m/n/10 emodpy_malaria.interventions.mosquitorelease\T1/qtm/m/n/10 , Overfull \hbox (3.62183pt too wide) in paragraph at lines 7675--7676 []\T1/txtt/m/n/10 emodpy_malaria.interventions.outdoorrestkill\T1/qtm/m/n/10 , Overfull \hbox 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8--10 \T1/qtm/m/it/10 emodpy_malaria.interventions.common\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 10--12 []\T1/txtt/m/n/10 add_campaign_event() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 10--12 \T1/qtm/m/it/10 emodpy_malaria.interventions.outbreak\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 12--14 []\T1/txtt/m/n/10 add_community_health_worker() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (47.96248pt too wide) in paragraph at lines 12--14 \T1/qtm/m/it/10 emodpy_malaria.interventions.community_health_worker\T1/qtm/m/n /10 ), Underfull \hbox (badness 10000) in paragraph at lines 14--16 []\T1/txtt/m/n/10 add_diagnostic_survey() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 14--16 \T1/qtm/m/it/10 emodpy_malaria.interventions.diag_survey\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 16--18 []\T1/txtt/m/n/10 add_drug_campaign() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Overfull \hbox (4.22249pt too wide) in paragraph at lines 16--18 \T1/qtm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 18--20 []\T1/txtt/m/n/10 add_drug_resistance() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Underfull \hbox (badness 10000) in paragraph at lines 20--22 []\T1/txtt/m/n/10 add_drug_status_report() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m od-ule Underfull \hbox (badness 10000) in paragraph at lines 22--24 []\T1/txtt/m/n/10 add_event_recorder() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 24--26 []\T1/txtt/m/n/10 add_fMDA() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (4.22249pt too wide) in paragraph at lines 24--26 \T1/qtm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 26--28 []\T1/txtt/m/n/10 add_genes_and_alleles() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 28--30 []\T1/txtt/m/n/10 add_habitat_reduction_event() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (27.56747pt too wide) in paragraph at lines 28--30 \T1/qtm/m/it/10 emodpy_malaria.interventions.scale_larval_habitats\T1/qtm/m/n/1 0 ), Underfull \hbox (badness 10000) in paragraph at lines 30--32 []\T1/txtt/m/n/10 add_human_migration_tracking() \T1/qtm/m/n/10 (\T1/qtm/m/it/1 0 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 32--34 []\T1/txtt/m/n/10 add_initial_vectors_per_species() Overfull \hbox (127.35252pt too wide) in paragraph at lines 32--34 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.demographics.MalariaDemographics .MalariaDemographics Underfull \hbox (badness 10000) in paragraph at lines 34--36 []\T1/txtt/m/n/10 add_initial_vectors_per_species_from_csv() Overfull \hbox (127.35252pt too wide) in paragraph at lines 34--36 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.demographics.MalariaDemographics .MalariaDemographics Underfull \hbox (badness 10000) in paragraph at lines 36--38 []\T1/txtt/m/n/10 add_insecticide_resistance() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 38--40 []\T1/txtt/m/n/10 add_insecticide_resistance() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 40--42 []\T1/txtt/m/n/10 add_itn_scheduled() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 42--44 []\T1/txtt/m/n/10 add_itn_triggered() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 44--46 []\T1/txtt/m/n/10 add_larval_habitat_multiplier() Overfull \hbox (127.35252pt too wide) in paragraph at lines 44--46 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.demographics.MalariaDemographics .MalariaDemographics Underfull \hbox (badness 10000) in paragraph at lines 46--48 []\T1/txtt/m/n/10 add_larvicide() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 46--48 \T1/qtm/m/it/10 emodpy_malaria.interventions.larvicide\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 48--50 []\T1/txtt/m/n/10 add_malaria_immunity_report() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 50--52 []\T1/txtt/m/n/10 add_malaria_patient_json_report() \T1/qtm/m/n/10 (\T1/qtm/m/i t/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 52--54 []\T1/txtt/m/n/10 add_malaria_sql_report() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m od-ule Underfull \hbox (badness 10000) in paragraph at lines 54--56 []\T1/txtt/m/n/10 add_malaria_summary_report() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 56--58 []\T1/txtt/m/n/10 add_malaria_survey_analyzer() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 58--60 []\T1/txtt/m/n/10 add_malaria_transmission_report() \T1/qtm/m/n/10 (\T1/qtm/m/i t/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 60--62 []\T1/txtt/m/n/10 add_MDA() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (4.22249pt too wide) in paragraph at lines 60--62 \T1/qtm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 62--64 []\T1/txtt/m/n/10 add_MSAT() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (4.22249pt too wide) in paragraph at lines 62--64 \T1/qtm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 64--66 []\T1/txtt/m/n/10 add_mutation() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 66--68 []\T1/txtt/m/n/10 add_outbreak_individual() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 66--68 \T1/qtm/m/it/10 emodpy_malaria.interventions.outbreak\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 68--70 []\T1/txtt/m/n/10 add_outbreak_malaria_genetics() \T1/qtm/m/n/10 (\T1/qtm/m/it/ 10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 70--72 []\T1/txtt/m/n/10 add_outbreak_malaria_var_genes() \T1/qtm/m/n/10 (\T1/qtm/m/it /10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 72--74 []\T1/txtt/m/n/10 add_outdoorrestkill() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Underfull \hbox (badness 10000) in paragraph at lines 74--76 []\T1/txtt/m/n/10 add_report_event_counter() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule [103] Underfull \hbox (badness 10000) in paragraph at lines 78--80 []\T1/txtt/m/n/10 add_report_intervention_pop_avg() \T1/qtm/m/n/10 (\T1/qtm/m/i t/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 80--82 []\T1/txtt/m/n/10 add_report_malaria_filtered() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 82--84 []\T1/txtt/m/n/10 add_report_malaria_filtered_intrahost() \T1/qtm/m/n/10 (\T1/q tm/m/it/10 in Underfull \hbox (badness 10000) in paragraph at lines 84--86 []\T1/txtt/m/n/10 add_report_node_demographics() \T1/qtm/m/n/10 (\T1/qtm/m/it/1 0 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 86--88 []\T1/txtt/m/n/10 add_report_node_demographics_malaria() \T1/qtm/m/n/10 (\T1/qt m/m/it/10 in Overfull \hbox (16.87178pt too wide) in paragraph at lines 88--90 []\T1/txtt/m/n/10 add_report_node_demographics_malaria_genetics() Underfull \hbox (badness 10000) in paragraph at lines 90--92 []\T1/txtt/m/n/10 add_report_vector_genetics() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 92--94 []\T1/txtt/m/n/10 add_report_vector_migration() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 94--96 []\T1/txtt/m/n/10 add_report_vector_stats() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 96--98 []\T1/txtt/m/n/10 add_report_vector_stats_malaria_genetics() Underfull \hbox (badness 10000) in paragraph at lines 98--100 []\T1/txtt/m/n/10 add_rfMDA() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (4.22249pt too wide) in paragraph at lines 98--100 \T1/qtm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 100--102 []\T1/txtt/m/n/10 add_rfMSAT() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (4.22249pt too wide) in paragraph at lines 100--102 \T1/qtm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 102--104 []\T1/txtt/m/n/10 add_scale_larval_habitats() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 i n mod-ule Overfull \hbox (27.56747pt too wide) in paragraph at lines 102--104 \T1/qtm/m/it/10 emodpy_malaria.interventions.scale_larval_habitats\T1/qtm/m/n/1 0 ), Underfull \hbox (badness 10000) in paragraph at lines 104--106 []\T1/txtt/m/n/10 add_scheduled_antimalarial_drug() \T1/qtm/m/n/10 (\T1/qtm/m/i t/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 106--108 []\T1/txtt/m/n/10 add_scheduled_input_eir() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 106--108 \T1/qtm/m/it/10 emodpy_malaria.interventions.inputeir\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 108--110 []\T1/txtt/m/n/10 add_scheduled_irs_housing_modification() \T1/qtm/m/n/10 (\T1/ qtm/m/it/10 in Underfull \hbox (badness 10000) in paragraph at lines 110--112 []\T1/txtt/m/n/10 add_scheduled_ivermectin() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 110--112 \T1/qtm/m/it/10 emodpy_malaria.interventions.ivermectin\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 112--114 []\T1/txtt/m/n/10 add_scheduled_mosquito_release() \T1/qtm/m/n/10 (\T1/qtm/m/it /10 in mod-ule Overfull \hbox (5.84247pt too wide) in paragraph at lines 112--114 \T1/qtm/m/it/10 emodpy_malaria.interventions.mosquitorelease\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 114--116 []\T1/txtt/m/n/10 add_scheduled_space_spraying() \T1/qtm/m/n/10 (\T1/qtm/m/it/1 0 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 114--116 \T1/qtm/m/it/10 emodpy_malaria.interventions.spacespraying\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 116--118 []\T1/txtt/m/n/10 add_scheduled_sugar_trap() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 116--118 \T1/qtm/m/it/10 emodpy_malaria.interventions.sugartrap\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 118--120 []\T1/txtt/m/n/10 add_scheduled_usage_dependent_bednet() \T1/qtm/m/n/10 (\T1/qt m/m/it/10 in Overfull \hbox (72.8525pt too wide) in paragraph at lines 118--120 \T1/qtm/m/it/10 mod-ule emodpy_malaria.interventions.usage_dependent_bednet\T1/ qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 120--122 []\T1/txtt/m/n/10 add_scheduled_vaccine() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 120--122 \T1/qtm/m/it/10 emodpy_malaria.interventions.vaccine\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 124--126 []\T1/txtt/m/n/10 add_species() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 126--128 []\T1/txtt/m/n/10 add_species() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 128--130 []\T1/txtt/m/n/10 add_species_drivers() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Underfull \hbox (badness 10000) in paragraph at lines 130--131 []\T1/txtt/m/n/10 add_trait() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 131--133 []\T1/txtt/m/n/10 add_treatment_seeking() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule Overfull \hbox (13.81248pt too wide) in paragraph at lines 131--133 \T1/qtm/m/it/10 emodpy_malaria.interventions.treatment_seeking\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 133--135 \T1/qtm/m/it/10 ule emodpy_malaria.interventions.common\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 135--137 []\T1/txtt/m/n/10 add_triggered_irs_housing_modification() \T1/qtm/m/n/10 (\T1/ qtm/m/it/10 in Underfull \hbox (badness 10000) in paragraph at lines 137--139 []\T1/txtt/m/n/10 add_triggered_ivermectin() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 137--139 \T1/qtm/m/it/10 emodpy_malaria.interventions.ivermectin\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 139--141 []\T1/txtt/m/n/10 add_triggered_usage_dependent_bednet() \T1/qtm/m/n/10 (\T1/qt m/m/it/10 in Overfull \hbox (72.8525pt too wide) in paragraph at lines 139--141 \T1/qtm/m/it/10 mod-ule emodpy_malaria.interventions.usage_dependent_bednet\T1/ qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 141--143 []\T1/txtt/m/n/10 add_triggered_vaccine() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 141--143 \T1/qtm/m/it/10 emodpy_malaria.interventions.vaccine\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 143--145 []\T1/txtt/m/n/10 add_vector_habitat_report() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 i n mod-ule Underfull \hbox (badness 10000) in paragraph at lines 145--147 []\T1/txtt/m/n/10 adherent_drug() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 145--147 \T1/qtm/m/it/10 emodpy_malaria.interventions.adherentdrug\T1/qtm/m/n/10 ), Overfull \hbox (52.95236pt too wide) in paragraph at lines 150--152 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.MalariaImmunityReport Overfull \hbox (66.65236pt too wide) in paragraph at lines 152--154 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.MalariaPatientJSONReport Overfull \hbox (27.96236pt too wide) in paragraph at lines 154--156 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.MalariaSqlReport Overfull \hbox (53.25237pt too wide) in paragraph at lines 156--158 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.MalariaSummaryReport Overfull \hbox (73.90236pt too wide) in paragraph at lines 158--160 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.MalariaSurveyJSONAnalyzer Overfull \hbox (27.91235pt too wide) in paragraph at lines 160--162 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.ReportDrugStatus Overfull \hbox (37.50235pt too wide) in paragraph at lines 162--164 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.ReportEventCounter Overfull \hbox (86.26233pt too wide) in paragraph at lines 164--166 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.ReportHumanMigrationTracking Overfull \hbox (69.73235pt too wide) in paragraph at lines 166--168 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.ReportInfectionStatsMalaria [104] Overfull \hbox (61.24232pt too wide) in paragraph at lines 168--170 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.ReportInterventionPopAvg Overfull \hbox (46.60233pt too wide) in paragraph at lines 170--172 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.ReportMalariaFiltered Overfull \hbox (85.14232pt too wide) in paragraph at lines 172--174 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.ReportMalariaFilteredIntraHost Overfull \hbox (61.69237pt too wide) in paragraph at lines 174--176 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.ReportNodeDemographics Overfull \hbox (94.47237pt too wide) in paragraph at lines 176--178 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.ReportNodeDemographicsMalaria Overfull \hbox (129.31238pt too wide) in paragraph at lines 178--180 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.ReportNodeDemographicsMalariaGenetics Overfull \hbox (118.53233pt too wide) in paragraph at lines 180--182 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.ReportSimpleMalariaTransmissionJSON Overfull \hbox (43.05237pt too wide) in paragraph at lines 182--184 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.ReportVectorGenetics Overfull \hbox (48.32236pt too wide) in paragraph at lines 184--186 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.ReportVectorMigration Overfull \hbox (27.51236pt too wide) in paragraph at lines 186--188 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.ReportVectorStats Overfull \hbox (95.13237pt too wide) in paragraph at lines 188--190 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.ReportVectorStatsMalariaGenetics Overfull \hbox (74.94232pt too wide) in paragraph at lines 190--192 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.SpatialReportMalariaFiltered Overfull \hbox (38.77235pt too wide) in paragraph at lines 192--194 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.VectorHabitatReport Underfull \hbox (badness 10000) in paragraph at lines 197--199 []\T1/txtt/m/n/10 drug_configs_from_code() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m od-ule Overfull \hbox (4.22249pt too wide) in paragraph at lines 197--199 \T1/qtm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/qtm/m/n/10 ), Overfull \hbox (16.87178pt too wide) in paragraph at lines 206--207 []\T1/txtt/m/n/10 emodpy_malaria.demographics.MalariaDemographics Overfull \hbox (43.1217pt too wide) in paragraph at lines 216--217 []\T1/txtt/m/n/10 emodpy_malaria.interventions.community_health_worker Overfull \hbox (1.12183pt too wide) in paragraph at lines 232--233 []\T1/txtt/m/n/10 emodpy_malaria.interventions.mosquitorelease Overfull \hbox (1.12183pt too wide) in paragraph at lines 236--237 []\T1/txtt/m/n/10 emodpy_malaria.interventions.outdoorrestkill Overfull \hbox (32.62173pt too wide) in paragraph at lines 238--239 []\T1/txtt/m/n/10 emodpy_malaria.interventions.scale_larval_habitats Overfull \hbox (11.6218pt too wide) in paragraph at lines 244--245 []\T1/txtt/m/n/10 emodpy_malaria.interventions.treatment_seeking Overfull \hbox (37.87172pt too wide) in paragraph at lines 246--247 []\T1/txtt/m/n/10 emodpy_malaria.interventions.usage_dependent_bednet Overfull \hbox (1.12183pt too wide) in paragraph at lines 252--253 []\T1/txtt/m/n/10 emodpy_malaria.malaria_vector_species_params Underfull \hbox (badness 10000) in paragraph at lines 263--265 []\T1/txtt/m/n/10 fmda_cfg() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (4.22249pt too wide) in paragraph at lines 263--265 \T1/qtm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 265--267 []\T1/txtt/m/n/10 from_csv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (36.1975pt too wide) in paragraph at lines 265--267 \T1/qtm/m/it/10 emodpy_malaria.demographics.MalariaDemographics\T1/qtm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 267--269 []\T1/txtt/m/n/10 from_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (36.1975pt too wide) in paragraph at lines 267--269 \T1/qtm/m/it/10 emodpy_malaria.demographics.MalariaDemographics\T1/qtm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 269--271 []\T1/txtt/m/n/10 from_pop_csv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (36.1975pt too wide) in paragraph at lines 269--271 \T1/qtm/m/it/10 emodpy_malaria.demographics.MalariaDemographics\T1/qtm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 271--273 []\T1/txtt/m/n/10 from_template_node() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le Overfull \hbox (36.1975pt too wide) in paragraph at lines 271--273 \T1/qtm/m/it/10 emodpy_malaria.demographics.MalariaDemographics\T1/qtm/m/n/10 ) , [105] Underfull \hbox (badness 10000) in paragraph at lines 276--278 []\T1/txtt/m/n/10 get_drug_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 278--280 []\T1/txtt/m/n/10 get_file_from_http() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 280--282 []\T1/txtt/m/n/10 get_species_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 282--284 []\T1/txtt/m/n/10 get_species_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 287--289 []\T1/txtt/m/n/10 irs_configuration() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 292--294 []\T1/txtt/m/n/10 MalariaDemographics \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (36.1975pt too wide) in paragraph at lines 292--294 \T1/qtm/m/it/10 emodpy_malaria.demographics.MalariaDemographics\T1/qtm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 294--296 []\T1/txtt/m/n/10 MalariaImmunityReport \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class i n Underfull \hbox (badness 10000) in paragraph at lines 296--298 []\T1/txtt/m/n/10 MalariaPatientJSONReport \T1/qtm/m/n/10 (\T1/qtm/m/it/10 clas s in Underfull \hbox (badness 10000) in paragraph at lines 298--300 []\T1/txtt/m/n/10 MalariaSqlReport \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 300--302 []\T1/txtt/m/n/10 MalariaSummaryReport \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 302--304 []\T1/txtt/m/n/10 MalariaSurveyJSONAnalyzer \T1/qtm/m/n/10 (\T1/qtm/m/it/10 cla ss in Overfull \hbox (39.37178pt too wide) in paragraph at lines 307--308 []| \T1/txtt/m/n/10 emodpy_malaria.demographics.MalariaDemographics\T1/qtm/m/n/ 10 , Overfull \hbox (7.87187pt too 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in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 454--456 []\T1/txtt/m/n/10 set_species_param() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 456--458 []\T1/txtt/m/n/10 set_team_defaults() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 458--460 []\T1/txtt/m/n/10 set_team_defaults() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 460--462 []\T1/txtt/m/n/10 set_team_drug_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod -ule Underfull \hbox (badness 10000) in paragraph at lines 462--464 []\T1/txtt/m/n/10 SpatialReportMalariaFiltered \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 464--466 []\T1/txtt/m/n/10 species_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (16.16747pt too wide) in paragraph at lines 464--466 \T1/qtm/m/it/10 emodpy_malaria.malaria_vector_species_params\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 469--471 []\T1/txtt/m/n/10 VectorHabitatReport \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in [107] [108]) (./institute-for-disease-modeling-emodpy-malaria.aux) ) (see the transcript file for additional information){/usr/share/texmf/fonts/enc /dvips/tex-gyre/q-ec.enc}{/usr/share/texlive/texmf-dist/fonts/enc/dvips/base/8r .enc}{/usr/share/texmf/fonts/enc/dvips/tex-gyre/q-ts1.enc} Output written on institute-for-disease-modeling-emodpy-malaria.pdf (112 pages, 474697 bytes). 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