Read the Docs build information
Build id: 921323
Project: beliveau-lab-tigerfish
Version: latest
Commit: 6d642e43afadd749832508d1650a3739fb4f47f9
Date: 2022-04-19T17:05:20.283981Z
State: finished
Success: False


[rtd-command-info] start-time: 2022-04-19T17:05:22.235474Z, end-time: 2022-04-19T17:05:24.730436Z, duration: 2, exit-code: 0
git clone --no-single-branch --depth 50 git@github.com:beliveau-lab/TigerFISH.git .
Cloning into '.'...
Warning: Permanently added 'github.com,192.30.255.113' (ECDSA) to the list of known hosts.

[rtd-command-info] start-time: 2022-04-19T17:05:24.919652Z, end-time: 2022-04-19T17:05:25.284758Z, duration: 0, exit-code: 0
git checkout --force origin/master
Note: switching to 'origin/master'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at 6d642e4 updated requirements

[rtd-command-info] start-time: 2022-04-19T17:05:25.463716Z, end-time: 2022-04-19T17:05:25.528128Z, duration: 0, exit-code: 0
git clean -d -f -f


[rtd-command-info] start-time: 2022-04-19T17:05:26.578383Z, end-time: 2022-04-19T17:05:31.116994Z, duration: 4, exit-code: 0
python3.7 -mvirtualenv 
Using base prefix '/home/docs/.pyenv/versions/3.7.9'
New python executable in /home/docs/checkouts/readthedocs.org/user_builds/beliveau-lab-tigerfish/envs/latest/bin/python3.7
Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/beliveau-lab-tigerfish/envs/latest/bin/python
Installing setuptools, pip, wheel...
done.

[rtd-command-info] start-time: 2022-04-19T17:05:31.324556Z, end-time: 2022-04-19T17:05:33.191775Z, duration: 1, exit-code: 0
python -m pip install --upgrade --no-cache-dir pip setuptools<58.3.0
Requirement already satisfied: pip in /home/docs/checkouts/readthedocs.org/user_builds/beliveau-lab-tigerfish/envs/latest/lib/python3.7/site-packages (22.0.4)
Collecting setuptools<58.3.0
  Downloading setuptools-58.2.0-py3-none-any.whl (946 kB)
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Installing collected packages: setuptools
  Attempting uninstall: setuptools
    Found existing installation: setuptools 62.1.0
    Uninstalling setuptools-62.1.0:
      Successfully uninstalled setuptools-62.1.0
Successfully installed setuptools-58.2.0

[rtd-command-info] start-time: 2022-04-19T17:05:33.374166Z, end-time: 2022-04-19T17:05:41.897280Z, duration: 8, exit-code: 0
python -m pip install --upgrade --no-cache-dir mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx sphinx-rtd-theme readthedocs-sphinx-ext<2.2
Collecting mock==1.0.1
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  Preparing metadata (setup.py): started
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Collecting pillow==5.4.1
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Collecting alabaster!=0.7.5,<0.8,>=0.7
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Collecting sphinx
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Collecting readthedocs-sphinx-ext<2.2
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Collecting future
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Collecting docutils>=0.11
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Collecting docutils>=0.11
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Collecting importlib-metadata>=4.4
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Collecting packaging
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Collecting sphinxcontrib-applehelp
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Collecting sphinxcontrib-devhelp
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Collecting imagesize
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Collecting snowballstemmer>=1.1
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Collecting Pygments>=2.0
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Collecting babel>=1.3
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Collecting requests>=2.5.0
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Collecting sphinxcontrib-serializinghtml>=1.1.5
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Collecting sphinxcontrib-jsmath
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Collecting Jinja2>=2.3
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Collecting pytz>=2015.7
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Collecting zipp>=0.5
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Collecting charset-normalizer~=2.0.0
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Collecting certifi>=2017.4.17
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Collecting pyparsing!=3.0.5,>=2.0.2
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Building wheels for collected packages: mock, future
  Building wheel for mock (setup.py): started
  Building wheel for mock (setup.py): finished with status 'done'
  Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23773 sha256=be117fae2aa46d3395c4ddfdca83107a396ba074608758add2d6a53015bc1764
  Stored in directory: /tmp/pip-ephem-wheel-cache-rde4cqs8/wheels/7a/94/b1/0fdc5339a5bd487a5cc15421ec200d9ba3e2aa7190e4a727f1
  Building wheel for future (setup.py): started
  Building wheel for future (setup.py): finished with status 'done'
  Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491070 sha256=0477f5a6a6ce6f01ad17ca6374e4a99fbd41a0d8968c5b7f5b79aec882e10862
  Stored in directory: /tmp/pip-ephem-wheel-cache-rde4cqs8/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0
Successfully built mock future
Installing collected packages: snowballstemmer, pytz, mock, certifi, alabaster, zipp, urllib3, typing-extensions, sphinxcontrib-serializinghtml, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, pyparsing, Pygments, pillow, MarkupSafe, imagesize, idna, future, docutils, charset-normalizer, babel, requests, packaging, Jinja2, importlib-metadata, commonmark, sphinx, readthedocs-sphinx-ext, sphinx-rtd-theme, recommonmark
Successfully installed Jinja2-3.1.1 MarkupSafe-2.1.1 Pygments-2.11.2 alabaster-0.7.12 babel-2.9.1 certifi-2021.10.8 charset-normalizer-2.0.12 commonmark-0.8.1 docutils-0.17.1 future-0.18.2 idna-3.3 imagesize-1.3.0 importlib-metadata-4.11.3 mock-1.0.1 packaging-21.3 pillow-5.4.1 pyparsing-3.0.8 pytz-2022.1 readthedocs-sphinx-ext-2.1.5 recommonmark-0.5.0 requests-2.27.1 snowballstemmer-2.2.0 sphinx-4.5.0 sphinx-rtd-theme-1.0.0 sphinxcontrib-applehelp-1.0.2 sphinxcontrib-devhelp-1.0.2 sphinxcontrib-htmlhelp-2.0.0 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-qthelp-1.0.3 sphinxcontrib-serializinghtml-1.1.5 typing-extensions-4.2.0 urllib3-1.26.9 zipp-3.8.0

[rtd-command-info] start-time: 2022-04-19T17:05:42.123801Z, end-time: 2022-04-19T17:05:43.685498Z, duration: 1, exit-code: 1
python -m pip install --exists-action=w --no-cache-dir -r docs/requirements.txt
Collecting git+https://github.com/readthedocs/sphinx-hoverxref@master (from -r docs/requirements.txt (line 13))
  Cloning https://github.com/readthedocs/sphinx-hoverxref (to revision master) to /tmp/pip-req-build-6ism0do5
  Running command git clone --filter=blob:none --quiet https://github.com/readthedocs/sphinx-hoverxref /tmp/pip-req-build-6ism0do5
  WARNING: Did not find branch or tag 'master', assuming revision or ref.
  Running command git checkout -q master
  error: pathspec 'master' did not match any file(s) known to git.
  error: subprocess-exited-with-error
  
  × git checkout -q master did not run successfully.
  │ exit code: 1
  ╰─> See above for output.
  
  note: This error originates from a subprocess, and is likely not a problem with pip.
error: subprocess-exited-with-error

× git checkout -q master did not run successfully.
│ exit code: 1
╰─> See above for output.

note: This error originates from a subprocess, and is likely not a problem with pip.