Read the Docs build information
Build id: 920339
Project: beliveau-lab-tigerfish
Version: latest
Commit: f36d8c5c8ffec14a5386accc82065c9248166749
Date: 2022-04-18T21:47:38.741301Z
State: finished
Success: False


[rtd-command-info] start-time: 2022-04-18T21:47:40.673451Z, end-time: 2022-04-18T21:47:42.852264Z, duration: 2, exit-code: 0
git clone --no-single-branch --depth 50 git@github.com:beliveau-lab/TigerFISH.git .
Cloning into '.'...
Warning: Permanently added 'github.com,192.30.255.112' (ECDSA) to the list of known hosts.

[rtd-command-info] start-time: 2022-04-18T21:47:43.034726Z, end-time: 2022-04-18T21:47:43.393923Z, duration: 0, exit-code: 0
git checkout --force origin/master
Note: switching to 'origin/master'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at f36d8c5 added yml

[rtd-command-info] start-time: 2022-04-18T21:47:43.583366Z, end-time: 2022-04-18T21:47:43.649057Z, duration: 0, exit-code: 0
git clean -d -f -f


[rtd-command-info] start-time: 2022-04-18T21:47:44.836719Z, end-time: 2022-04-18T21:47:49.458969Z, duration: 4, exit-code: 0
python3.7 -mvirtualenv 
Using base prefix '/home/docs/.pyenv/versions/3.7.9'
New python executable in /home/docs/checkouts/readthedocs.org/user_builds/beliveau-lab-tigerfish/envs/latest/bin/python3.7
Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/beliveau-lab-tigerfish/envs/latest/bin/python
Installing setuptools, pip, wheel...
done.

[rtd-command-info] start-time: 2022-04-18T21:47:49.632773Z, end-time: 2022-04-18T21:47:51.589619Z, duration: 1, exit-code: 0
python -m pip install --upgrade --no-cache-dir pip setuptools<58.3.0
Requirement already satisfied: pip in /home/docs/checkouts/readthedocs.org/user_builds/beliveau-lab-tigerfish/envs/latest/lib/python3.7/site-packages (22.0.4)
Collecting setuptools<58.3.0
  Downloading setuptools-58.2.0-py3-none-any.whl (946 kB)
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Installing collected packages: setuptools
  Attempting uninstall: setuptools
    Found existing installation: setuptools 62.1.0
    Uninstalling setuptools-62.1.0:
      Successfully uninstalled setuptools-62.1.0
Successfully installed setuptools-58.2.0

[rtd-command-info] start-time: 2022-04-18T21:47:51.754278Z, end-time: 2022-04-18T21:48:00.168368Z, duration: 8, exit-code: 0
python -m pip install --upgrade --no-cache-dir mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx sphinx-rtd-theme readthedocs-sphinx-ext<2.2
Collecting mock==1.0.1
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  Preparing metadata (setup.py): started
  Preparing metadata (setup.py): finished with status 'done'
Collecting pillow==5.4.1
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Collecting alabaster!=0.7.5,<0.8,>=0.7
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Collecting sphinx
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Collecting readthedocs-sphinx-ext<2.2
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Collecting future
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Collecting docutils>=0.11
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Collecting babel>=1.3
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Collecting packaging
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Collecting sphinxcontrib-serializinghtml>=1.1.5
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Collecting importlib-metadata>=4.4
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Collecting snowballstemmer>=1.1
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Collecting sphinxcontrib-htmlhelp>=2.0.0
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Collecting sphinxcontrib-qthelp
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Collecting sphinxcontrib-devhelp
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Collecting sphinxcontrib-jsmath
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Collecting Pygments>=2.0
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Collecting sphinxcontrib-applehelp
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Collecting imagesize
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Collecting requests>=2.5.0
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Collecting docutils>=0.11
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Collecting Jinja2>=2.3
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Collecting pytz>=2015.7
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Collecting typing-extensions>=3.6.4
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Collecting charset-normalizer~=2.0.0
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Collecting certifi>=2017.4.17
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Collecting pyparsing!=3.0.5,>=2.0.2
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Building wheels for collected packages: mock, future
  Building wheel for mock (setup.py): started
  Building wheel for mock (setup.py): finished with status 'done'
  Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23773 sha256=1ae9f8b38b25f25ccadff5d6d9a9f67a2351dd729f8a6f38dad172c4a43839f8
  Stored in directory: /tmp/pip-ephem-wheel-cache-g4tcmuvc/wheels/7a/94/b1/0fdc5339a5bd487a5cc15421ec200d9ba3e2aa7190e4a727f1
  Building wheel for future (setup.py): started
  Building wheel for future (setup.py): finished with status 'done'
  Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491070 sha256=24914c9d947529f91012d3ccc13e858b3ea240d9ec9ca180efa2a751956d11ec
  Stored in directory: /tmp/pip-ephem-wheel-cache-g4tcmuvc/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0
Successfully built mock future
Installing collected packages: snowballstemmer, pytz, mock, certifi, alabaster, zipp, urllib3, typing-extensions, sphinxcontrib-serializinghtml, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, pyparsing, Pygments, pillow, MarkupSafe, imagesize, idna, future, docutils, charset-normalizer, babel, requests, packaging, Jinja2, importlib-metadata, commonmark, sphinx, readthedocs-sphinx-ext, sphinx-rtd-theme, recommonmark
Successfully installed Jinja2-3.1.1 MarkupSafe-2.1.1 Pygments-2.11.2 alabaster-0.7.12 babel-2.9.1 certifi-2021.10.8 charset-normalizer-2.0.12 commonmark-0.8.1 docutils-0.17.1 future-0.18.2 idna-3.3 imagesize-1.3.0 importlib-metadata-4.11.3 mock-1.0.1 packaging-21.3 pillow-5.4.1 pyparsing-3.0.8 pytz-2022.1 readthedocs-sphinx-ext-2.1.5 recommonmark-0.5.0 requests-2.27.1 snowballstemmer-2.2.0 sphinx-4.5.0 sphinx-rtd-theme-1.0.0 sphinxcontrib-applehelp-1.0.2 sphinxcontrib-devhelp-1.0.2 sphinxcontrib-htmlhelp-2.0.0 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-qthelp-1.0.3 sphinxcontrib-serializinghtml-1.1.5 typing-extensions-4.2.0 urllib3-1.26.9 zipp-3.8.0

[rtd-command-info] start-time: 2022-04-18T21:48:00.359688Z, end-time: 2022-04-18T21:48:01.951327Z, duration: 1, exit-code: 1
python -m pip install --exists-action=w --no-cache-dir -r requirements/docs.txt
Collecting git+https://github.com/readthedocs/sphinx-hoverxref@master (from -r requirements/docs.txt (line 13))
  Cloning https://github.com/readthedocs/sphinx-hoverxref (to revision master) to /tmp/pip-req-build-p1bn69hc
  Running command git clone --filter=blob:none --quiet https://github.com/readthedocs/sphinx-hoverxref /tmp/pip-req-build-p1bn69hc
  WARNING: Did not find branch or tag 'master', assuming revision or ref.
  Running command git checkout -q master
  error: pathspec 'master' did not match any file(s) known to git.
  error: subprocess-exited-with-error
  
  × git checkout -q master did not run successfully.
  │ exit code: 1
  ╰─> See above for output.
  
  note: This error originates from a subprocess, and is likely not a problem with pip.
error: subprocess-exited-with-error

× git checkout -q master did not run successfully.
│ exit code: 1
╰─> See above for output.

note: This error originates from a subprocess, and is likely not a problem with pip.