Read the Docs build information
Build id: 920302
Project: beliveau-lab-tigerfish
Version: latest
Commit: b2ff16b61ed06ee477e677d61c04c7bbb59ae652
Date: 2022-04-18T21:04:05.199683Z
State: finished
Success: False


[rtd-command-info] start-time: 2022-04-18T21:04:07.019096Z, end-time: 2022-04-18T21:04:09.217474Z, duration: 2, exit-code: 0
git clone --no-single-branch --depth 50 git@github.com:beliveau-lab/TigerFISH.git .
Cloning into '.'...
Warning: Permanently added 'github.com,192.30.255.113' (ECDSA) to the list of known hosts.

[rtd-command-info] start-time: 2022-04-18T21:04:09.476323Z, end-time: 2022-04-18T21:04:09.840205Z, duration: 0, exit-code: 0
git checkout --force origin/master
Note: switching to 'origin/master'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at b2ff16b Added conf file

[rtd-command-info] start-time: 2022-04-18T21:04:10.033461Z, end-time: 2022-04-18T21:04:10.102434Z, duration: 0, exit-code: 0
git clean -d -f -f


[rtd-command-info] start-time: 2022-04-18T21:04:11.138881Z, end-time: 2022-04-18T21:04:15.672012Z, duration: 4, exit-code: 0
python3.7 -mvirtualenv 
Using base prefix '/home/docs/.pyenv/versions/3.7.9'
New python executable in /home/docs/checkouts/readthedocs.org/user_builds/beliveau-lab-tigerfish/envs/latest/bin/python3.7
Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/beliveau-lab-tigerfish/envs/latest/bin/python
Installing setuptools, pip, wheel...
done.

[rtd-command-info] start-time: 2022-04-18T21:04:15.848536Z, end-time: 2022-04-18T21:04:17.715251Z, duration: 1, exit-code: 0
python -m pip install --upgrade --no-cache-dir pip setuptools<58.3.0
Requirement already satisfied: pip in /home/docs/checkouts/readthedocs.org/user_builds/beliveau-lab-tigerfish/envs/latest/lib/python3.7/site-packages (22.0.4)
Collecting setuptools<58.3.0
  Downloading setuptools-58.2.0-py3-none-any.whl (946 kB)
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Installing collected packages: setuptools
  Attempting uninstall: setuptools
    Found existing installation: setuptools 62.1.0
    Uninstalling setuptools-62.1.0:
      Successfully uninstalled setuptools-62.1.0
Successfully installed setuptools-58.2.0

[rtd-command-info] start-time: 2022-04-18T21:04:17.936071Z, end-time: 2022-04-18T21:04:28.350908Z, duration: 10, exit-code: 0
python -m pip install --upgrade --no-cache-dir mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx sphinx-rtd-theme readthedocs-sphinx-ext<2.2
Collecting mock==1.0.1
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  Preparing metadata (setup.py): started
  Preparing metadata (setup.py): finished with status 'done'
Collecting pillow==5.4.1
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Collecting alabaster!=0.7.5,<0.8,>=0.7
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Collecting sphinx
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Collecting readthedocs-sphinx-ext<2.2
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Collecting future
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Collecting docutils>=0.11
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Collecting snowballstemmer>=1.1
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Collecting sphinxcontrib-jsmath
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Collecting Pygments>=2.0
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Collecting Jinja2>=2.3
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Collecting requests>=2.5.0
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Collecting importlib-metadata>=4.4
  Downloading importlib_metadata-4.11.3-py3-none-any.whl (18 kB)
Collecting sphinxcontrib-serializinghtml>=1.1.5
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Collecting babel>=1.3
  Downloading Babel-2.9.1-py2.py3-none-any.whl (8.8 MB)
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Collecting packaging
  Downloading packaging-21.3-py3-none-any.whl (40 kB)
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Collecting sphinxcontrib-applehelp
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Collecting docutils>=0.11
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Collecting sphinxcontrib-htmlhelp>=2.0.0
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Collecting sphinxcontrib-qthelp
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Collecting imagesize
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Collecting sphinxcontrib-devhelp
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Collecting pytz>=2015.7
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Collecting typing-extensions>=3.6.4
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Collecting MarkupSafe>=2.0
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Collecting charset-normalizer~=2.0.0
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Collecting pyparsing!=3.0.5,>=2.0.2
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Building wheels for collected packages: mock, future
  Building wheel for mock (setup.py): started
  Building wheel for mock (setup.py): finished with status 'done'
  Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23773 sha256=84f62f59dd3dd28f66571805d0753e5b50ddd48b9eb0c2b85de4de1b27c85b70
  Stored in directory: /tmp/pip-ephem-wheel-cache-l7729234/wheels/7a/94/b1/0fdc5339a5bd487a5cc15421ec200d9ba3e2aa7190e4a727f1
  Building wheel for future (setup.py): started
  Building wheel for future (setup.py): finished with status 'done'
  Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491070 sha256=7b5ba7ed1373964b925c2000c663cbd5b9728e343d1cfc6ee8050b75a7556ba7
  Stored in directory: /tmp/pip-ephem-wheel-cache-l7729234/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0
Successfully built mock future
Installing collected packages: snowballstemmer, pytz, mock, certifi, alabaster, zipp, urllib3, typing-extensions, sphinxcontrib-serializinghtml, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, pyparsing, Pygments, pillow, MarkupSafe, imagesize, idna, future, docutils, charset-normalizer, babel, requests, packaging, Jinja2, importlib-metadata, commonmark, sphinx, readthedocs-sphinx-ext, sphinx-rtd-theme, recommonmark
Successfully installed Jinja2-3.1.1 MarkupSafe-2.1.1 Pygments-2.11.2 alabaster-0.7.12 babel-2.9.1 certifi-2021.10.8 charset-normalizer-2.0.12 commonmark-0.8.1 docutils-0.17.1 future-0.18.2 idna-3.3 imagesize-1.3.0 importlib-metadata-4.11.3 mock-1.0.1 packaging-21.3 pillow-5.4.1 pyparsing-3.0.8 pytz-2022.1 readthedocs-sphinx-ext-2.1.5 recommonmark-0.5.0 requests-2.27.1 snowballstemmer-2.2.0 sphinx-4.5.0 sphinx-rtd-theme-1.0.0 sphinxcontrib-applehelp-1.0.2 sphinxcontrib-devhelp-1.0.2 sphinxcontrib-htmlhelp-2.0.0 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-qthelp-1.0.3 sphinxcontrib-serializinghtml-1.1.5 typing-extensions-4.2.0 urllib3-1.26.9 zipp-3.8.0

[rtd-command-info] start-time: 2022-04-18T21:04:28.538854Z, end-time: 2022-04-18T21:04:30.100586Z, duration: 1, exit-code: 1
python -m pip install --exists-action=w --no-cache-dir -r requirements/docs.txt
Collecting git+https://github.com/readthedocs/sphinx-hoverxref@master (from -r requirements/docs.txt (line 13))
  Cloning https://github.com/readthedocs/sphinx-hoverxref (to revision master) to /tmp/pip-req-build-eiobsfk1
  Running command git clone --filter=blob:none --quiet https://github.com/readthedocs/sphinx-hoverxref /tmp/pip-req-build-eiobsfk1
  WARNING: Did not find branch or tag 'master', assuming revision or ref.
  Running command git checkout -q master
  error: pathspec 'master' did not match any file(s) known to git.
  error: subprocess-exited-with-error
  
  × git checkout -q master did not run successfully.
  │ exit code: 1
  ╰─> See above for output.
  
  note: This error originates from a subprocess, and is likely not a problem with pip.
error: subprocess-exited-with-error

× git checkout -q master did not run successfully.
│ exit code: 1
╰─> See above for output.

note: This error originates from a subprocess, and is likely not a problem with pip.