Read the Docs build information Build id: 861532 Project: institute-for-disease-modeling-emod-api Version: latest Commit: 2c9e8afffb32a6c8df32af594510689039a049d4 Date: 2022-02-22T20:29:12.076818Z State: finished Success: True [rtd-command-info] start-time: 2022-02-22T20:29:13.924251Z, end-time: 2022-02-22T20:29:15.803984Z, duration: 1, exit-code: 0 git clone --no-single-branch --depth 50 git@github.com:InstituteforDiseaseModeling/emod-api.git . Cloning into '.'... Warning: Permanently added 'github.com,192.30.255.113' (ECDSA) to the list of known hosts. [rtd-command-info] start-time: 2022-02-22T20:29:16.022998Z, end-time: 2022-02-22T20:29:16.242678Z, duration: 0, exit-code: 0 git checkout --force origin/master Note: switching to 'origin/master'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 2c9e8af Minor bump to 1.22 for added change ip functionality (#476) [rtd-command-info] start-time: 2022-02-22T20:29:16.465943Z, end-time: 2022-02-22T20:29:16.534201Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2022-02-22T20:29:17.844372Z, end-time: 2022-02-22T20:29:23.604382Z, duration: 5, exit-code: 0 python3.7 -mvirtualenv --system-site-packages Using base prefix '/home/docs/.pyenv/versions/3.7.9' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2022-02-22T20:29:23.773191Z, end-time: 2022-02-22T20:29:25.819744Z, duration: 2, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip setuptools<58.3.0 Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/simple Requirement already satisfied: pip in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (22.0.3) Collecting setuptools<58.3.0 Downloading setuptools-58.2.0-py3-none-any.whl (946 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 946.1/946.1 KB 28.8 MB/s eta 0:00:00 Installing collected packages: setuptools Attempting uninstall: setuptools Found existing installation: setuptools 60.9.3 Uninstalling setuptools-60.9.3: Successfully uninstalled setuptools-60.9.3 Successfully installed setuptools-58.2.0 [rtd-command-info] start-time: 2022-02-22T20:29:25.999599Z, end-time: 2022-02-22T20:29:35.019715Z, duration: 9, exit-code: 0 python -m pip install --upgrade --no-cache-dir -I mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<2.2 setuptools<58.3.0 Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/simple Collecting mock==1.0.1 Downloading mock-1.0.1.zip (861 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 861.9/861.9 KB 31.4 MB/s eta 0:00:00 Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.0/2.0 MB 185.2 MB/s eta 0:00:00 Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 47.4/47.4 KB 172.4 MB/s eta 0:00:00 Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.6-py2.py3-none-any.whl (3.1 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 3.1/3.1 MB 209.2 MB/s eta 0:00:00 Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 6.4/6.4 MB 206.4 MB/s eta 0:00:00 Collecting readthedocs-sphinx-ext<2.2 Downloading readthedocs_sphinx_ext-2.1.4-py2.py3-none-any.whl (29 kB) Collecting setuptools<58.3.0 Downloading setuptools-58.2.0-py3-none-any.whl (946 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 946.1/946.1 KB 213.1 MB/s eta 0:00:00 Collecting future Downloading future-0.18.2.tar.gz (829 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 829.2/829.2 KB 222.8 MB/s eta 0:00:00 Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting docutils>=0.11 Downloading 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eta 0:00:00 Collecting imagesize Downloading imagesize-1.3.0-py2.py3-none-any.whl (5.2 kB) Collecting six>=1.5 Downloading six-1.16.0-py2.py3-none-any.whl (11 kB) Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.2.0-py2.py3-none-any.whl (93 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 93.0/93.0 KB 196.1 MB/s eta 0:00:00 Collecting Jinja2>=2.3 Downloading Jinja2-3.0.3-py3-none-any.whl (133 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 133.6/133.6 KB 206.8 MB/s eta 0:00:00 Collecting pytz>=2015.7 Downloading pytz-2021.3-py2.py3-none-any.whl (503 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 503.5/503.5 KB 137.6 MB/s eta 0:00:00 Collecting MarkupSafe>=2.0 Downloading MarkupSafe-2.1.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB) Collecting charset-normalizer~=2.0.0 Downloading charset_normalizer-2.0.12-py3-none-any.whl (39 kB) Collecting idna<4,>=2.5 Downloading idna-3.3-py3-none-any.whl (61 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 61.2/61.2 KB 190.5 MB/s eta 0:00:00 Collecting certifi>=2017.4.17 Downloading certifi-2021.10.8-py2.py3-none-any.whl (149 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 149.2/149.2 KB 216.6 MB/s eta 0:00:00 Collecting urllib3<1.27,>=1.21.1 Downloading urllib3-1.26.8-py2.py3-none-any.whl (138 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 138.7/138.7 KB 218.5 MB/s eta 0:00:00 Collecting pyparsing!=3.0.5,>=2.0.2 Downloading pyparsing-3.0.7-py3-none-any.whl (98 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 98.0/98.0 KB 207.6 MB/s eta 0:00:00 Collecting sphinxcontrib-serializinghtml Downloading sphinxcontrib_serializinghtml-1.1.5-py2.py3-none-any.whl (94 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 94.0/94.0 KB 202.6 MB/s eta 0:00:00 Building wheels for collected packages: mock, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23773 sha256=375b2fcec7a073426d5f405067585e3a1276a1ce71e2bed3b83ff9066b0dfec9 Stored in directory: /tmp/pip-ephem-wheel-cache-bndhkyh8/wheels/7a/94/b1/0fdc5339a5bd487a5cc15421ec200d9ba3e2aa7190e4a727f1 Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491070 sha256=4c667ec01fe3123f4ed7513c7a106df38ada80c7e49e236f0c867341f4ad1662 Stored in directory: /tmp/pip-ephem-wheel-cache-bndhkyh8/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0 Successfully built mock future Installing collected packages: snowballstemmer, pytz, mock, certifi, alabaster, urllib3, sphinxcontrib-serializinghtml, six, setuptools, pyparsing, Pygments, pillow, MarkupSafe, imagesize, idna, future, docutils, charset-normalizer, babel, sphinxcontrib-websupport, requests, packaging, Jinja2, commonmark, sphinx, readthedocs-sphinx-ext, sphinx-rtd-theme, recommonmark ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts. matplotlib 3.3.2 requires pillow>=6.2.0, but you have pillow 5.4.1 which is incompatible. Successfully installed Jinja2-3.0.3 MarkupSafe-2.1.0 Pygments-2.11.2 alabaster-0.7.12 babel-2.9.1 certifi-2021.10.8 charset-normalizer-2.0.12 commonmark-0.8.1 docutils-0.17.1 future-0.18.2 idna-3.3 imagesize-1.3.0 mock-1.0.1 packaging-21.3 pillow-5.4.1 pyparsing-3.0.7 pytz-2021.3 readthedocs-sphinx-ext-2.1.4 recommonmark-0.5.0 requests-2.27.1 setuptools-58.2.0 six-1.16.0 snowballstemmer-2.2.0 sphinx-1.8.6 sphinx-rtd-theme-0.4.3 sphinxcontrib-serializinghtml-1.1.5 sphinxcontrib-websupport-1.2.4 urllib3-1.26.8 [rtd-command-info] start-time: 2022-02-22T20:29:35.192752Z, end-time: 2022-02-22T20:29:41.235244Z, duration: 6, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r requirements.txt Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/simple Requirement already satisfied: numpy!=1.19.4 in /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages (from -r requirements.txt (line 1)) (1.19.2) Collecting pyyaml Downloading PyYAML-6.0-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (596 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 596.3/596.3 KB 18.0 MB/s eta 0:00:00 Requirement already satisfied: pandas in /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages (from -r requirements.txt (line 3)) (1.1.3) Requirement already satisfied: scipy in /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages (from -r requirements.txt (line 4)) (1.5.3) Collecting shapely Downloading Shapely-1.8.1.post1-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (2.0 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.0/2.0 MB 131.3 MB/s eta 0:00:00 Collecting pyproj Downloading pyproj-3.2.1-cp37-cp37m-manylinux2010_x86_64.whl (6.3 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 6.3/6.3 MB 195.3 MB/s eta 0:00:00 Collecting geographiclib Downloading geographiclib-1.52-py3-none-any.whl (38 kB) Collecting sklearn Downloading sklearn-0.0.tar.gz (1.1 kB) Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting lz4 Downloading lz4-4.0.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (1.2 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.2/1.2 MB 242.0 MB/s eta 0:00:00 Collecting prodict Downloading prodict-0.8.18.tar.gz (4.2 kB) Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Requirement already satisfied: pytz>=2017.2 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from pandas->-r requirements.txt (line 3)) (2021.3) Requirement already satisfied: python-dateutil>=2.7.3 in /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages (from pandas->-r requirements.txt (line 3)) (2.8.1) Requirement already satisfied: certifi in 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sklearn (setup.py): finished with status 'done' Created wheel for sklearn: filename=sklearn-0.0-py2.py3-none-any.whl size=1310 sha256=ca78cdece8ae8c0290b6c9cb1c5e0c9b5c618cd8082c7cf3515971402c319e8d Stored in directory: /tmp/pip-ephem-wheel-cache-qr99nv46/wheels/46/ef/c3/157e41f5ee1372d1be90b09f74f82b10e391eaacca8f22d33e Building wheel for prodict (setup.py): started Building wheel for prodict (setup.py): finished with status 'done' Created wheel for prodict: filename=prodict-0.8.18-py3-none-any.whl size=4223 sha256=5f6315eba27b7c1cab317c96a379984d34bc981fddb8c80b00618b64319ce22c Stored in directory: /tmp/pip-ephem-wheel-cache-qr99nv46/wheels/a8/e6/67/cda708a2cd06853a75a33ecab7ade9eda84e962a7635406c70 Successfully built sklearn prodict Installing collected packages: prodict, geographiclib, threadpoolctl, shapely, pyyaml, pyproj, lz4, joblib, scikit-learn, sklearn Successfully installed geographiclib-1.52 joblib-1.1.0 lz4-4.0.0 prodict-0.8.18 pyproj-3.2.1 pyyaml-6.0 scikit-learn-1.0.2 shapely-1.8.1.post1 sklearn-0.0 threadpoolctl-3.1.0 [rtd-command-info] start-time: 2022-02-22T20:29:41.398083Z, end-time: 2022-02-22T20:29:45.313577Z, duration: 3, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r docs/requirements.txt Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/simple Collecting sphinx-rtd-theme~=0.5.0 Downloading sphinx_rtd_theme-0.5.2-py2.py3-none-any.whl (9.1 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 9.1/9.1 MB 114.6 MB/s eta 0:00:00 Collecting sphinxcontrib-napoleon~=0.7 Downloading sphinxcontrib_napoleon-0.7-py2.py3-none-any.whl (17 kB) Collecting sphinx~=3.3.1 Downloading Sphinx-3.3.1-py3-none-any.whl (2.9 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.9/2.9 MB 202.5 MB/s eta 0:00:00 Collecting plantweb~=1.2.1 Downloading plantweb-1.2.1-py3-none-any.whl (20 kB) Collecting sphinxcontrib-programoutput~=0.16 Downloading sphinxcontrib_programoutput-0.17-py2.py3-none-any.whl (22 kB) Collecting sphinxext.remoteliteralinclude Downloading sphinxext_remoteliteralinclude-0.3.0-py3-none-any.whl (6.3 kB) Collecting sphinx-copybutton~=0.4.0 Downloading sphinx_copybutton-0.4.0-py3-none-any.whl (12 kB) Collecting docutils<0.17 Downloading docutils-0.16-py2.py3-none-any.whl (548 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 548.2/548.2 KB 235.6 MB/s eta 0:00:00 Requirement already satisfied: six>=1.5.2 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from sphinxcontrib-napoleon~=0.7->-r docs/requirements.txt (line 2)) (1.16.0) Collecting pockets>=0.3 Downloading pockets-0.9.1-py2.py3-none-any.whl (26 kB) Collecting sphinxcontrib-jsmath Downloading sphinxcontrib_jsmath-1.0.1-py2.py3-none-any.whl (5.1 kB) Requirement already satisfied: Jinja2>=2.3 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from sphinx~=3.3.1->-r docs/requirements.txt (line 3)) (3.0.3) Collecting sphinxcontrib-devhelp Downloading sphinxcontrib_devhelp-1.0.2-py2.py3-none-any.whl (84 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 84.7/84.7 KB 186.0 MB/s eta 0:00:00 Requirement already satisfied: packaging in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from sphinx~=3.3.1->-r docs/requirements.txt (line 3)) (21.3) Requirement already satisfied: babel>=1.3 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from sphinx~=3.3.1->-r docs/requirements.txt (line 3)) (2.9.1) Requirement already satisfied: Pygments>=2.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from sphinx~=3.3.1->-r docs/requirements.txt (line 3)) (2.11.2) Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from sphinx~=3.3.1->-r docs/requirements.txt (line 3)) (58.2.0) Requirement already satisfied: requests>=2.5.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from sphinx~=3.3.1->-r docs/requirements.txt (line 3)) (2.27.1) Collecting sphinxcontrib-htmlhelp Downloading sphinxcontrib_htmlhelp-2.0.0-py2.py3-none-any.whl (100 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 100.5/100.5 KB 191.2 MB/s eta 0:00:00 Requirement already satisfied: sphinxcontrib-serializinghtml in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from sphinx~=3.3.1->-r docs/requirements.txt (line 3)) (1.1.5) Collecting sphinxcontrib-applehelp Downloading sphinxcontrib_applehelp-1.0.2-py2.py3-none-any.whl (121 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 121.2/121.2 KB 210.3 MB/s eta 0:00:00 Collecting sphinxcontrib-qthelp Downloading sphinxcontrib_qthelp-1.0.3-py2.py3-none-any.whl (90 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 90.6/90.6 KB 191.6 MB/s eta 0:00:00 Requirement already satisfied: snowballstemmer>=1.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from sphinx~=3.3.1->-r docs/requirements.txt (line 3)) (2.2.0) Requirement already satisfied: alabaster<0.8,>=0.7 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from sphinx~=3.3.1->-r docs/requirements.txt (line 3)) (0.7.12) Requirement already satisfied: imagesize in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from sphinx~=3.3.1->-r docs/requirements.txt (line 3)) (1.3.0) Requirement already satisfied: pytz>=2015.7 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from babel>=1.3->sphinx~=3.3.1->-r docs/requirements.txt (line 3)) (2021.3) Requirement already satisfied: MarkupSafe>=2.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from Jinja2>=2.3->sphinx~=3.3.1->-r docs/requirements.txt (line 3)) (2.1.0) Requirement already satisfied: idna<4,>=2.5 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from requests>=2.5.0->sphinx~=3.3.1->-r docs/requirements.txt (line 3)) (3.3) Requirement already satisfied: urllib3<1.27,>=1.21.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from requests>=2.5.0->sphinx~=3.3.1->-r docs/requirements.txt (line 3)) (1.26.8) Requirement already satisfied: certifi>=2017.4.17 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from requests>=2.5.0->sphinx~=3.3.1->-r docs/requirements.txt (line 3)) (2021.10.8) Requirement already satisfied: charset-normalizer~=2.0.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from requests>=2.5.0->sphinx~=3.3.1->-r docs/requirements.txt (line 3)) (2.0.12) Requirement already satisfied: pyparsing!=3.0.5,>=2.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from packaging->sphinx~=3.3.1->-r docs/requirements.txt (line 3)) (3.0.7) Installing collected packages: sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, pockets, docutils, sphinxcontrib-napoleon, sphinx, plantweb, sphinxext.remoteliteralinclude, sphinxcontrib-programoutput, sphinx-rtd-theme, sphinx-copybutton Attempting uninstall: docutils Found existing installation: docutils 0.17.1 Uninstalling docutils-0.17.1: Successfully uninstalled docutils-0.17.1 Attempting uninstall: sphinx Found existing installation: Sphinx 1.8.6 Uninstalling Sphinx-1.8.6: Successfully uninstalled Sphinx-1.8.6 Attempting uninstall: sphinx-rtd-theme Found existing installation: sphinx-rtd-theme 0.4.3 Uninstalling sphinx-rtd-theme-0.4.3: Successfully uninstalled sphinx-rtd-theme-0.4.3 Successfully installed docutils-0.16 plantweb-1.2.1 pockets-0.9.1 sphinx-3.3.1 sphinx-copybutton-0.4.0 sphinx-rtd-theme-0.5.2 sphinxcontrib-applehelp-1.0.2 sphinxcontrib-devhelp-1.0.2 sphinxcontrib-htmlhelp-2.0.0 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-napoleon-0.7 sphinxcontrib-programoutput-0.17 sphinxcontrib-qthelp-1.0.3 sphinxext.remoteliteralinclude-0.3.0 [rtd-command-info] start-time: 2022-02-22T20:29:45.494735Z, end-time: 2022-02-22T20:29:46.249166Z, duration: 0, exit-code: 0 python ./setup.py install --force running install running bdist_egg running egg_info creating emod_api.egg-info writing emod_api.egg-info/PKG-INFO writing dependency_links to emod_api.egg-info/dependency_links.txt writing requirements to emod_api.egg-info/requires.txt writing top-level names to emod_api.egg-info/top_level.txt writing manifest file 'emod_api.egg-info/SOURCES.txt' reading manifest file 'emod_api.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no directories found matching 'emod_api/tests/data/*' warning: no directories found matching 'emod_api/dtk_tools/serialization/test-data/*' adding license file 'LICENSE' writing manifest file 'emod_api.egg-info/SOURCES.txt' installing library code to build/bdist.linux-x86_64/egg running install_lib running build_py creating build creating build/lib creating build/lib/emod_api copying emod_api/__main__.py -> build/lib/emod_api copying emod_api/__init__.py -> build/lib/emod_api copying emod_api/campaign.py -> build/lib/emod_api copying emod_api/schema_to_class.py -> build/lib/emod_api creating build/lib/examples copying examples/spatial_report.py -> build/lib/examples copying examples/weather_file.py -> build/lib/examples copying examples/write_config_from_default_and_params.py -> build/lib/examples copying examples/intervention_from_schema.py -> build/lib/examples copying examples/default_from_schema.py -> build/lib/examples copying examples/migration.py -> build/lib/examples copying examples/serialized_file_mc_to_sc.py -> build/lib/examples copying examples/__init__.py -> build/lib/examples copying examples/some_config_i_found.py -> build/lib/examples copying examples/insetchart.py -> build/lib/examples creating build/lib/emod_api/schema copying emod_api/schema/dtk_post_process_schema.py -> build/lib/emod_api/schema copying emod_api/schema/__main__.py -> build/lib/emod_api/schema copying emod_api/schema/get_schema.py -> build/lib/emod_api/schema copying emod_api/schema/__init__.py -> build/lib/emod_api/schema creating build/lib/emod_api/tabularoutput copying emod_api/tabularoutput/__main__.py -> build/lib/emod_api/tabularoutput copying emod_api/tabularoutput/__init__.py -> build/lib/emod_api/tabularoutput creating build/lib/emod_api/config copying emod_api/config/from_poi_and_binary.py -> build/lib/emod_api/config copying emod_api/config/from_schema.py -> build/lib/emod_api/config copying emod_api/config/dtk_post_process_adhocevents.py -> build/lib/emod_api/config copying emod_api/config/from_overrides.py -> build/lib/emod_api/config copying emod_api/config/default_from_schema.py -> build/lib/emod_api/config copying emod_api/config/__main__.py -> build/lib/emod_api/config copying emod_api/config/default_from_schema_no_validation.py -> build/lib/emod_api/config copying emod_api/config/schema_to_config.py -> build/lib/emod_api/config copying emod_api/config/dtk_pre_process_adhocevents.py -> build/lib/emod_api/config copying emod_api/config/__init__.py -> build/lib/emod_api/config copying emod_api/config/dtk_pre_process_w5ml.py -> build/lib/emod_api/config creating build/lib/emod_api/spatialreports copying emod_api/spatialreports/spatial.py -> build/lib/emod_api/spatialreports copying emod_api/spatialreports/__main__.py -> build/lib/emod_api/spatialreports copying emod_api/spatialreports/__init__.py -> build/lib/emod_api/spatialreports creating build/lib/emod_api/weather copying emod_api/weather/weather.py -> build/lib/emod_api/weather copying emod_api/weather/__main__.py -> build/lib/emod_api/weather copying emod_api/weather/__init__.py -> build/lib/emod_api/weather creating build/lib/emod_api/serialization copying emod_api/serialization/dtkFileSupport.py -> build/lib/emod_api/serialization copying emod_api/serialization/__main__.py -> build/lib/emod_api/serialization copying emod_api/serialization/dtkFileUtility.py -> build/lib/emod_api/serialization copying emod_api/serialization/dtkFileTools.py -> build/lib/emod_api/serialization copying emod_api/serialization/SerializedPopulation.py -> build/lib/emod_api/serialization copying emod_api/serialization/__init__.py -> build/lib/emod_api/serialization copying emod_api/serialization/CensusAndModPop.py -> build/lib/emod_api/serialization creating build/lib/emod_api/interventions copying emod_api/interventions/simple_vaccine.py -> build/lib/emod_api/interventions copying emod_api/interventions/import_pressure.py -> build/lib/emod_api/interventions copying emod_api/interventions/utils.py -> build/lib/emod_api/interventions copying emod_api/interventions/migration.py -> build/lib/emod_api/interventions copying emod_api/interventions/__main__.py -> build/lib/emod_api/interventions copying emod_api/interventions/outbreak.py -> build/lib/emod_api/interventions copying emod_api/interventions/__init__.py -> build/lib/emod_api/interventions copying emod_api/interventions/node_multiplier.py -> build/lib/emod_api/interventions copying emod_api/interventions/common.py -> build/lib/emod_api/interventions creating build/lib/emod_api/migration copying emod_api/migration/migration.py -> build/lib/emod_api/migration copying emod_api/migration/__main__.py -> build/lib/emod_api/migration copying emod_api/migration/__init__.py -> build/lib/emod_api/migration creating build/lib/emod_api/demographics copying emod_api/demographics/DemographicsInputDataParsers.py -> build/lib/emod_api/demographics copying emod_api/demographics/PreDefinedDistributions.py -> build/lib/emod_api/demographics copying emod_api/demographics/Node.py -> build/lib/emod_api/demographics copying emod_api/demographics/__main__.py -> build/lib/emod_api/demographics copying emod_api/demographics/DemographicsGenerator.py -> build/lib/emod_api/demographics copying emod_api/demographics/demographics_utils.py -> build/lib/emod_api/demographics copying emod_api/demographics/Demographics.py -> build/lib/emod_api/demographics copying emod_api/demographics/grid_construction.py -> build/lib/emod_api/demographics copying emod_api/demographics/BaseInputFile.py -> build/lib/emod_api/demographics copying emod_api/demographics/DemographicsTemplates.py -> build/lib/emod_api/demographics copying emod_api/demographics/PropertiesAndAttributes.py -> build/lib/emod_api/demographics copying emod_api/demographics/Updateable.py -> build/lib/emod_api/demographics copying emod_api/demographics/__init__.py -> build/lib/emod_api/demographics creating build/lib/emod_api/channelreports copying emod_api/channelreports/channels.py -> build/lib/emod_api/channelreports copying emod_api/channelreports/__main__.py -> build/lib/emod_api/channelreports copying emod_api/channelreports/__init__.py -> build/lib/emod_api/channelreports creating build/lib/emod_api/migration/client copying emod_api/migration/client/client.py -> build/lib/emod_api/migration/client copying emod_api/migration/client/__init__.py -> build/lib/emod_api/migration/client creating build/lib/tests creating build/lib/tests/unittests copying tests/unittests/test_version.py -> build/lib/tests/unittests copying tests/unittests/test_properties_and_attributes.py -> build/lib/tests/unittests copying tests/unittests/test_schema_imports.py -> build/lib/tests/unittests copying tests/unittests/test_demographics_imports.py -> build/lib/tests/unittests copying tests/unittests/test_migration_imports.py -> build/lib/tests/unittests copying tests/unittests/test_config_imports.py -> build/lib/tests/unittests copying tests/unittests/__init__.py -> build/lib/tests/unittests creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/egg creating build/bdist.linux-x86_64/egg/emod_api creating build/bdist.linux-x86_64/egg/emod_api/schema copying build/lib/emod_api/schema/dtk_post_process_schema.py -> build/bdist.linux-x86_64/egg/emod_api/schema copying build/lib/emod_api/schema/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/schema copying build/lib/emod_api/schema/get_schema.py -> build/bdist.linux-x86_64/egg/emod_api/schema copying build/lib/emod_api/schema/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/schema creating build/bdist.linux-x86_64/egg/emod_api/tabularoutput copying build/lib/emod_api/tabularoutput/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/tabularoutput copying build/lib/emod_api/tabularoutput/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/tabularoutput creating build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/from_poi_and_binary.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/from_schema.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/dtk_post_process_adhocevents.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/from_overrides.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/default_from_schema.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/default_from_schema_no_validation.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/schema_to_config.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/dtk_pre_process_adhocevents.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/dtk_pre_process_w5ml.py -> build/bdist.linux-x86_64/egg/emod_api/config creating build/bdist.linux-x86_64/egg/emod_api/spatialreports copying build/lib/emod_api/spatialreports/spatial.py -> build/bdist.linux-x86_64/egg/emod_api/spatialreports copying build/lib/emod_api/spatialreports/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/spatialreports copying build/lib/emod_api/spatialreports/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/spatialreports creating build/bdist.linux-x86_64/egg/emod_api/weather copying build/lib/emod_api/weather/weather.py -> build/bdist.linux-x86_64/egg/emod_api/weather copying build/lib/emod_api/weather/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/weather copying build/lib/emod_api/weather/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/weather copying build/lib/emod_api/__main__.py -> build/bdist.linux-x86_64/egg/emod_api creating build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/dtkFileSupport.py -> build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/dtkFileUtility.py -> build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/dtkFileTools.py -> build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/SerializedPopulation.py -> build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/CensusAndModPop.py -> build/bdist.linux-x86_64/egg/emod_api/serialization creating build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/simple_vaccine.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/import_pressure.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/utils.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/migration.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/outbreak.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/node_multiplier.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/common.py -> build/bdist.linux-x86_64/egg/emod_api/interventions creating build/bdist.linux-x86_64/egg/emod_api/migration copying build/lib/emod_api/migration/migration.py -> build/bdist.linux-x86_64/egg/emod_api/migration copying build/lib/emod_api/migration/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/migration copying build/lib/emod_api/migration/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/migration creating build/bdist.linux-x86_64/egg/emod_api/migration/client copying build/lib/emod_api/migration/client/client.py -> build/bdist.linux-x86_64/egg/emod_api/migration/client copying build/lib/emod_api/migration/client/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/migration/client creating build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/DemographicsInputDataParsers.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/PreDefinedDistributions.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/Node.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/DemographicsGenerator.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/demographics_utils.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/Demographics.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/grid_construction.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/BaseInputFile.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/DemographicsTemplates.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/PropertiesAndAttributes.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/Updateable.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/__init__.py -> build/bdist.linux-x86_64/egg/emod_api copying build/lib/emod_api/campaign.py -> build/bdist.linux-x86_64/egg/emod_api creating build/bdist.linux-x86_64/egg/emod_api/channelreports copying build/lib/emod_api/channelreports/channels.py -> build/bdist.linux-x86_64/egg/emod_api/channelreports copying build/lib/emod_api/channelreports/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/channelreports copying build/lib/emod_api/channelreports/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/channelreports copying build/lib/emod_api/schema_to_class.py -> build/bdist.linux-x86_64/egg/emod_api creating build/bdist.linux-x86_64/egg/examples copying build/lib/examples/spatial_report.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/weather_file.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/write_config_from_default_and_params.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/intervention_from_schema.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/default_from_schema.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/migration.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/serialized_file_mc_to_sc.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/__init__.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/some_config_i_found.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/insetchart.py -> build/bdist.linux-x86_64/egg/examples creating build/bdist.linux-x86_64/egg/tests creating build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_version.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_properties_and_attributes.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_schema_imports.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_demographics_imports.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_migration_imports.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_config_imports.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/__init__.py -> build/bdist.linux-x86_64/egg/tests/unittests byte-compiling build/bdist.linux-x86_64/egg/emod_api/schema/dtk_post_process_schema.py to dtk_post_process_schema.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/schema/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/schema/get_schema.py to get_schema.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/schema/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/tabularoutput/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/tabularoutput/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/from_poi_and_binary.py to from_poi_and_binary.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/from_schema.py to from_schema.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/dtk_post_process_adhocevents.py to dtk_post_process_adhocevents.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/from_overrides.py to from_overrides.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/default_from_schema.py to default_from_schema.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/default_from_schema_no_validation.py to default_from_schema_no_validation.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/schema_to_config.py to schema_to_config.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/dtk_pre_process_adhocevents.py to dtk_pre_process_adhocevents.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/dtk_pre_process_w5ml.py to dtk_pre_process_w5ml.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/spatialreports/spatial.py to spatial.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/spatialreports/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/spatialreports/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/weather/weather.py to weather.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/weather/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/weather/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/dtkFileSupport.py to dtkFileSupport.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/dtkFileUtility.py to dtkFileUtility.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/dtkFileTools.py to dtkFileTools.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/SerializedPopulation.py to SerializedPopulation.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/CensusAndModPop.py to CensusAndModPop.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/simple_vaccine.py to simple_vaccine.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/import_pressure.py to import_pressure.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/utils.py to utils.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/migration.py to migration.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/outbreak.py to outbreak.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/node_multiplier.py to node_multiplier.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/common.py to common.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/migration/migration.py to migration.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/migration/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/migration/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/migration/client/client.py to client.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/migration/client/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/DemographicsInputDataParsers.py to DemographicsInputDataParsers.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/PreDefinedDistributions.py to PreDefinedDistributions.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/Node.py to Node.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/DemographicsGenerator.py to DemographicsGenerator.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/demographics_utils.py to demographics_utils.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/Demographics.py to Demographics.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/grid_construction.py to grid_construction.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/BaseInputFile.py to BaseInputFile.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/DemographicsTemplates.py to DemographicsTemplates.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/PropertiesAndAttributes.py to PropertiesAndAttributes.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/Updateable.py to Updateable.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/campaign.py to campaign.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/channelreports/channels.py to channels.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/channelreports/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/channelreports/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/schema_to_class.py to schema_to_class.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/spatial_report.py to spatial_report.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/weather_file.py to weather_file.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/write_config_from_default_and_params.py to write_config_from_default_and_params.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/intervention_from_schema.py to intervention_from_schema.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/default_from_schema.py to default_from_schema.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/migration.py to migration.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/serialized_file_mc_to_sc.py to serialized_file_mc_to_sc.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/some_config_i_found.py to some_config_i_found.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/insetchart.py to insetchart.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_version.py to test_version.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_properties_and_attributes.py to test_properties_and_attributes.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_schema_imports.py to test_schema_imports.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_demographics_imports.py to test_demographics_imports.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_migration_imports.py to test_migration_imports.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_config_imports.py to test_config_imports.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/__init__.py to __init__.cpython-37.pyc creating build/bdist.linux-x86_64/egg/EGG-INFO copying emod_api.egg-info/PKG-INFO -> build/bdist.linux-x86_64/egg/EGG-INFO copying emod_api.egg-info/SOURCES.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying emod_api.egg-info/dependency_links.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying emod_api.egg-info/requires.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying emod_api.egg-info/top_level.txt -> build/bdist.linux-x86_64/egg/EGG-INFO zip_safe flag not set; analyzing archive contents... emod_api.config.__pycache__.from_poi_and_binary.cpython-37: module references __file__ emod_api.serialization.__pycache__.dtkFileTools.cpython-37: module references __file__ emod_api.serialization.__pycache__.dtkFileUtility.cpython-37: module references __file__ examples.__pycache__.insetchart.cpython-37: module references __file__ examples.__pycache__.spatial_report.cpython-37: module references __file__ examples.__pycache__.weather_file.cpython-37: module references __file__ creating dist creating 'dist/emod_api-1.22.0-py3.7.egg' and adding 'build/bdist.linux-x86_64/egg' to it removing 'build/bdist.linux-x86_64/egg' (and everything under it) Processing emod_api-1.22.0-py3.7.egg creating /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages/emod_api-1.22.0-py3.7.egg Extracting emod_api-1.22.0-py3.7.egg to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Adding emod-api 1.22.0 to easy-install.pth file Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages/emod_api-1.22.0-py3.7.egg Processing dependencies for emod-api==1.22.0 Searching for prodict==0.8.18 Best match: prodict 0.8.18 Adding prodict 0.8.18 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for lz4==4.0.0 Best match: lz4 4.0.0 Adding lz4 4.0.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for sklearn==0.0 Best match: sklearn 0.0 Adding sklearn 0.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for geographiclib==1.52 Best match: geographiclib 1.52 Adding geographiclib 1.52 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for pyproj==3.2.1 Best match: pyproj 3.2.1 Adding pyproj 3.2.1 to easy-install.pth file Installing pyproj script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for Shapely==1.8.1.post1 Best match: Shapely 1.8.1.post1 Adding Shapely 1.8.1.post1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for scipy==1.5.3 Best match: scipy 1.5.3 Adding scipy 1.5.3 to easy-install.pth file Using /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages Searching for pandas==1.1.3 Best match: pandas 1.1.3 pandas 1.1.3 is already the active version in easy-install.pth Using /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages Searching for PyYAML==6.0 Best match: PyYAML 6.0 Adding PyYAML 6.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for numpy==1.19.2 Best match: numpy 1.19.2 numpy 1.19.2 is already the active version in easy-install.pth Installing f2py script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin Installing f2py3 script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin Installing f2py3.7 script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin Using /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages Searching for scikit-learn==1.0.2 Best match: scikit-learn 1.0.2 Adding scikit-learn 1.0.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for certifi==2021.10.8 Best match: certifi 2021.10.8 Adding certifi 2021.10.8 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for python-dateutil==2.8.1 Best match: python-dateutil 2.8.1 python-dateutil 2.8.1 is already the active version in easy-install.pth Using /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages Searching for pytz==2021.3 Best match: pytz 2021.3 Adding pytz 2021.3 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for threadpoolctl==3.1.0 Best match: threadpoolctl 3.1.0 Adding threadpoolctl 3.1.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for joblib==1.1.0 Best match: joblib 1.1.0 Adding joblib 1.1.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for six==1.16.0 Best match: six 1.16.0 Adding six 1.16.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Finished processing dependencies for emod-api==1.22.0 [rtd-command-info] start-time: 2022-02-22T20:29:49.863348Z, end-time: 2022-02-22T20:29:49.931360Z, duration: 0, exit-code: 0 cat docs/conf.py # -*- coding: utf-8 -*- # # Sphinx Demo docs build configuration file, created by # sphinx-quickstart on Fri Aug 26 16:52:16 2016. # # This file is execfile()d with the current directory set to its # containing dir. # # Note that not all possible configuration values are present in this # autogenerated file. # # All configuration values have a default; values that are commented out # serve to show the default. # If extensions (or modules to document with autodoc) are in another directory, # add these directories to sys.path here. If the directory is relative to the # docs root, use os.path.abspath to make it absolute, like shown here. # import os import subprocess import sys import sphinx_rtd_theme import configparser from datetime import datetime if sys.platform in ["linux", "darwin"]: subprocess.check_output(["make", "generate-api"], cwd=os.path.dirname(os.path.abspath(__file__))) else: subprocess.check_output(["make.bat", "generate-api"], cwd=os.path.dirname(os.path.abspath(__file__))) # Rename "emod-api" to "API reference" filename = 'modules.rst' # This must match the Makefile with open(filename) as f: # Read existing file lines = f.readlines() lines[0] = "API reference\n" # Blast away the existing heading and replace with this lines[1] = "=============\n" # Ensure the heading is the right length with open(filename, "w") as f: # Write new file f.writelines(lines) # -- General configuration ------------------------------------------------ tags.add('emodapi') # If your docs needs a minimal Sphinx version, state it here. # # needs_sphinx = '1.0' # Add any Sphinx extension module names here, as strings. They can be # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom # ones. extensions = [ 'sphinx.ext.mathjax', 'sphinx.ext.githubpages', 'sphinx.ext.autodoc', 'sphinxcontrib.napoleon', 'sphinx.ext.todo', 'plantweb.directive', 'sphinxcontrib.programoutput', 'sphinx_copybutton', 'sphinx.ext.intersphinx', 'sphinxext.remoteliteralinclude' ] plantuml = 'plantweb' autodoc_default_options = { 'member-order': 'bysource', 'members': None, 'exclude-members': '__all__' } autodoc_mock_imports = ['emod_api.dtk_tools'] napoleon_google_docstring = True # napoleon_numpy_docstring = True # Add any paths that contain templates here, relative to this directory. templates_path = ['_templates'] # The suffix(es) of source filenames. # You can specify multiple suffix as a list of string: # # source_suffix = ['.rst', '.md'] source_suffix = '.rst' # The encoding of source files. # # source_encoding = 'utf-8-sig' # The master toctree document. master_doc = 'index' # General information about the project. project = u'emod-api' copyright = f'1999 - {datetime.today().year}, Bill & Melinda Gates Foundation. All rights reserved.' author = u'Institute for Disease Modeling' # The version info for the project you're documenting, acts as replacement for # |version| and |release|, also used in various other places throughout the # built documents. # # The short X.Y version. #current_path = os.path.dirname(__file__) #version_path = os.path.join(current_path, '..', '.bumpversion.cfg') #config = configparser.ConfigParser() #config.read(version_path) #version = config['bumpversion']['current_version'] # The full version, including alpha/beta/rc tags. # release = u'1.0' # The language for content autogenerated by Sphinx. Refer to docs # for a list of supported languages. # # This is also used if you do content translation via gettext catalogs. # Usually you set "language" from the command line for these cases. language = None # There are two options for replacing |today|: either, you set today to some # non-false value, then it is used: # # today = '' # # Else, today_fmt is used as the format for a strftime call. # # today_fmt = '%B %d, %Y' # List of patterns, relative to source directory, that match files and # directories to ignore when looking for source files. # This patterns also effect to html_static_path and html_extra_path exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store'] # The reST default role (used for this markup: `text`) to use for all # documents. # # default_role = None # If true, '()' will be appended to :func: etc. cross-reference text. # # add_function_parentheses = True # If true, the current module name will be prepended to all description # unit titles (such as .. function::). # # add_module_names = True # If true, sectionauthor and moduleauthor directives will be shown in the # output. They are ignored by default. # # show_authors = False # The name of the Pygments (syntax highlighting) style to use. pygments_style = 'sphinx' # A list of ignored prefixes for module index sorting. # modindex_common_prefix = [] # If true, keep warnings as "system message" paragraphs in the built documents. # keep_warnings = False # If true, `todo` and `todoList` produce output, else they produce nothing. todo_include_todos = False # RST epilog is added to the end of every topic. Useful for replace # directives to use across the docset. rst_epilog = "\n.. include:: /variables.txt" # -- Options for HTML output ---------------------------------------------- # The theme to use for HTML and HTML Help pages. See the docs for # a list of builtin themes. # html_theme = 'sphinx_rtd_theme' # Theme options are theme-specific and customize the look and feel of a theme # further. For a list of options available for each theme, see the # docs. # # # html_theme_options = { # } # Add any paths that contain custom themes here, relative to this directory. html_theme_path = [sphinx_rtd_theme.get_html_theme_path()] # The name for this set of Sphinx documents. # " v docs" by default. # # html_title = u'Sphinx Demo v1.0' # A shorter title for the navigation bar. Default is the same as html_title. # # html_short_title = None # The name of an image file (relative to this directory) to place at the top # of the sidebar. # html_logo = "images/IDM_white.png" # The name of an image file (relative to this directory) to use as a favicon of # the docs. This file should be a Windows icon file (.ico) being 16x16 or 32x32 # pixels large. # html_favicon = "images/favicon.ico" # Add any paths that contain custom static files (such as style sheets) here, # relative to this directory. They are copied after the builtin static files, # so a file named "default.css" will overwrite the builtin "default.css". html_static_path = ['_static'] html_context = { 'css_files': [ '_static/theme_overrides.css', '_static/copy_button.css' ] } html_js_files = ['show_block_by_os.js'] # Add any extra paths that contain custom files (such as robots.txt or # .htaccess) here, relative to this directory. These files are copied # directly to the root of the docs. # # html_extra_path = [] # If not None, a 'Last updated on:' timestamp is inserted at every page # bottom, using the given strftime format. # The empty string is equivalent to '%b %d, %Y'. # # html_last_updated_fmt = None # If true, SmartyPants will be used to convert quotes and dashes to # typographically correct entities. # # html_use_smartypants = True # Custom sidebar templates, maps document names to template names. # # html_sidebars = {} # Additional templates that should be rendered to pages, maps page names to # template names. # # html_additional_pages = {} # If false, no module index is generated. # # html_domain_indices = True # If false, no index is generated. # # html_use_index = True # If true, the index is split into individual pages for each letter. # # html_split_index = False # If true, links to the reST sources are added to the pages. # html_show_sourcelink = False # If true, "Created using Sphinx" is shown in the HTML footer. Default is True. # html_show_sphinx = False # If true, "(C) Copyright ..." is shown in the HTML footer. Default is True. # # html_show_copyright = True # If true, an OpenSearch description file will be output, and all pages will # contain a tag referring to it. The value of this option must be the # base URL from which the finished HTML is served. # html_use_opensearch = 'www.idmod.org/docs/' # This is the file name suffix for HTML files (e.g. ".xhtml"). # html_file_suffix = None # Language to be used for generating the HTML full-text search index. # Sphinx supports the following languages: # 'da', 'de', 'en', 'es', 'fi', 'fr', 'hu', 'it', 'ja' # 'nl', 'no', 'pt', 'ro', 'ru', 'sv', 'tr', 'zh' # # html_search_language = 'en' # A dictionary with options for the search language support, empty by default. # 'ja' uses this config value. # 'zh' user can custom change `jieba` dictionary path. # # html_search_options = {'type': 'default'} # The name of a javascript file (relative to the configuration directory) that # implements a search results scorer. If empty, the default will be used. # # html_search_scorer = 'scorer.js' # Output file base name for HTML help builder. htmlhelp_basename = 'EMOD-API' # -- Options for LaTeX output --------------------------------------------- latex_elements = { # The paper size ('letterpaper' or 'a4paper'). # # 'papersize': 'letterpaper', # The font size ('10pt', '11pt' or '12pt'). # # 'pointsize': '10pt', # Additional stuff for the LaTeX preamble. # # 'preamble': '', # Latex figure (float) alignment # # 'figure_align': 'htbp', } # Grouping the document tree into LaTeX files. List of tuples # (source start file, target name, title, # author, documentclass [howto, manual, or own class]). latex_documents = [ (master_doc, 'emod-api-docs.tex', u'emod-api', u'Institute for Disease Modeling', 'manual'), ] # The name of an image file (relative to this directory) to place at the top of # the title page. # # latex_logo = None # For "manual" documents, if this is true, then toplevel headings are parts, # not chapters. # # latex_use_parts = False # If true, show page references after internal links. # # latex_show_pagerefs = False # If true, show URL addresses after external links. # # latex_show_urls = False # Documents to append as an appendix to all manuals. # # latex_appendices = [] # It false, will not define \strong, \code, itleref, \crossref ... but only # \sphinxstrong, ..., \sphinxtitleref, ... To help avoid clash with user added # packages. # # latex_keep_old_macro_names = True # If false, no module index is generated. # # latex_domain_indices = True # -- Options for manual page output --------------------------------------- # One entry per manual page. List of tuples # (source start file, name, description, authors, manual section). man_pages = [ (master_doc, 'emod-api-docs', u'emod-api', [author], 1) ] # If true, show URL addresses after external links. # man_show_urls = True # -- Options for Texinfo output ------------------------------------------- # Grouping the document tree into Texinfo files. List of tuples # (source start file, target name, title, author, # dir menu entry, description, category) texinfo_documents = [ (master_doc, 'emod-api-docs', u'emod-api', author, 'Institute for Disease Modeling', 'How to use emodpy for disease simulations.', 'Miscellaneous'), ] # Documents to append as an appendix to all manuals. # # texinfo_appendices = [] # If false, no module index is generated. # # texinfo_domain_indices = True # How to display URL addresses: 'footnote', 'no', or 'inline'. # # texinfo_show_urls = 'footnote' # If true, do not generate a @detailmenu in the "Top" node's menu. # # texinfo_no_detailmenu = False # Example configuration for intersphinx: refer to the Python standard library. intersphinx_mapping = {'python': ('https://docs.python.org/3', None), 'emodpy': ('https://docs.idmod.org/projects/emodpy/en/latest/', None), 'idmtools': ('https://docs.idmod.org/projects/idmtools/en/latest/', None), 'pycomps': ('https://docs.idmod.org/projects/pycomps/en/latest/', None) } ########################################################################### # auto-created readthedocs.org specific configuration # ########################################################################### # # The following code was added during an automated build on readthedocs.org # It is auto created and injected for every build. The result is based on the # conf.py.tmpl file found in the readthedocs.org codebase: # https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl # # Note: this file shouldn't rely on extra dependencies. import importlib import sys import os.path # Borrowed from six. PY3 = sys.version_info[0] == 3 string_types = str if PY3 else basestring from sphinx import version_info # Get suffix for proper linking to GitHub # This is deprecated in Sphinx 1.3+, # as each page can have its own suffix if globals().get('source_suffix', False): if isinstance(source_suffix, string_types): SUFFIX = source_suffix elif isinstance(source_suffix, (list, tuple)): # Sphinx >= 1.3 supports list/tuple to define multiple suffixes SUFFIX = source_suffix[0] elif isinstance(source_suffix, dict): # Sphinx >= 1.8 supports a mapping dictionary for multiple suffixes SUFFIX = list(source_suffix.keys())[0] # make a ``list()`` for py2/py3 compatibility else: # default to .rst SUFFIX = '.rst' else: SUFFIX = '.rst' # Add RTD Static Path. Add to the end because it overwrites previous files. if not 'html_static_path' in globals(): html_static_path = [] if os.path.exists('_static'): html_static_path.append('_static') # Add RTD Theme only if they aren't overriding it already using_rtd_theme = ( ( 'html_theme' in globals() and html_theme in ['default'] and # Allow people to bail with a hack of having an html_style 'html_style' not in globals() ) or 'html_theme' not in globals() ) if using_rtd_theme: theme = importlib.import_module('sphinx_rtd_theme') html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} if 'html_theme_path' in globals(): html_theme_path.append(theme.get_html_theme_path()) else: html_theme_path = [theme.get_html_theme_path()] if globals().get('websupport2_base_url', False): websupport2_base_url = 'https://readthedocs.com/websupport' websupport2_static_url = 'https://assets.readthedocs.com/' #Add project information to the template context. context = { 'using_theme': using_rtd_theme, 'html_theme': html_theme, 'current_version': "latest", 'version_slug': "latest", 'MEDIA_URL': "https://media.readthedocs.com/media/", 'STATIC_URL': "https://assets.readthedocs.com/", 'PRODUCTION_DOMAIN': "readthedocs.com", 'versions': [ ("latest", "/en/latest/"), ("v2.0.1", "/en/v2.0.1/"), ("v1.22.0", "/en/v1.22.0/"), ("v1.21.1", "/en/v1.21.1/"), ("v1.20.2", "/en/v1.20.2/"), ("v1.20.1", "/en/v1.20.1/"), ("v1.19.13", "/en/v1.19.13/"), ("v1.19.2", "/en/v1.19.2/"), ("v1.18.1", "/en/v1.18.1/"), ("v1.17.4", "/en/v1.17.4/"), ("v1.17.3", "/en/v1.17.3/"), ("v1.17.2", "/en/v1.17.2/"), ("v1.16.10", "/en/v1.16.10/"), ("v1.16.5", "/en/v1.16.5/"), ("v1.16.2", "/en/v1.16.2/"), ("v1.15.6", "/en/v1.15.6/"), ("v1.15.4", "/en/v1.15.4/"), ("v1.15.1", "/en/v1.15.1/"), ("v1.14.7", "/en/v1.14.7/"), ("v1.14.1", "/en/v1.14.1/"), ("v1.13.1", "/en/v1.13.1/"), ("v1.12.1", "/en/v1.12.1/"), ("v1.11.7", "/en/v1.11.7/"), ("v1.11.4", "/en/v1.11.4/"), ("v1.11.0", "/en/v1.11.0/"), ("v1.10.8", "/en/v1.10.8/"), ("v1.10.6", "/en/v1.10.6/"), ("v1.10.5", "/en/v1.10.5/"), ("v1.10.3", "/en/v1.10.3/"), ("v1.10.2", "/en/v1.10.2/"), ("v1.9.2", "/en/v1.9.2/"), ("v1.9.1", "/en/v1.9.1/"), ("v1.8.9", "/en/v1.8.9/"), ("v1.8.8", "/en/v1.8.8/"), ("v1.8.6", "/en/v1.8.6/"), ("v1.8.2", "/en/v1.8.2/"), ("v1.7.5", "/en/v1.7.5/"), ("v1.7.4", "/en/v1.7.4/"), ("v1.7.1", "/en/v1.7.1/"), ("v1.6.3", "/en/v1.6.3/"), ("v1.5.1", "/en/v1.5.1/"), ("v1.5.0", "/en/v1.5.0/"), ], 'downloads': [ ("pdf", "//docs.idmod.org/_/downloads/emod-api/en/latest/pdf/"), ("html", "//docs.idmod.org/_/downloads/emod-api/en/latest/htmlzip/"), ], 'subprojects': [ ], 'slug': 'institute-for-disease-modeling-emod-api', 'name': u'emod-api', 'rtd_language': u'en', 'programming_language': u'py', 'canonical_url': 'https://docs.idmod.org/projects/emod-api/en/latest/', 'analytics_code': 'UA-87656833-3', 'single_version': False, 'conf_py_path': '/docs/', 'api_host': 'https://readthedocs.com', 'github_user': 'InstituteforDiseaseModeling', 'proxied_api_host': '/_', 'github_repo': 'emod-api', 'github_version': 'master', 'display_github': True, 'bitbucket_user': 'None', 'bitbucket_repo': 'None', 'bitbucket_version': 'master', 'display_bitbucket': False, 'gitlab_user': 'None', 'gitlab_repo': 'None', 'gitlab_version': 'master', 'display_gitlab': False, 'READTHEDOCS': True, 'using_theme': (html_theme == "default"), 'new_theme': (html_theme == "sphinx_rtd_theme"), 'source_suffix': SUFFIX, 'ad_free': False, 'docsearch_disabled': False, 'user_analytics_code': 'UA-87656833-3', 'global_analytics_code': 'UA-17997319-2', 'commit': '2c9e8aff', } # For sphinx >=1.8 we can use html_baseurl to set the canonical URL. # https://www.sphinx-doc.org/en/master/usage/configuration.html#confval-html_baseurl if version_info >= (1, 8): if not globals().get('html_baseurl'): html_baseurl = context['canonical_url'] context['canonical_url'] = None if 'html_context' in globals(): html_context.update(context) else: html_context = context # Add custom RTD extension if 'extensions' in globals(): # Insert at the beginning because it can interfere # with other extensions. # See https://github.com/rtfd/readthedocs.org/pull/4054 extensions.insert(0, "readthedocs_ext.readthedocs") else: extensions = ["readthedocs_ext.readthedocs"] # Add External version warning banner to the external version documentation if 'branch' == 'external': extensions.insert(1, "readthedocs_ext.external_version_warning") readthedocs_vcs_url = 'None' readthedocs_build_url = 'https://readthedocs.com/projects/institute-for-disease-modeling-emod-api/builds/861532/' project_language = 'en' # User's Sphinx configurations language_user = globals().get('language', None) latex_engine_user = globals().get('latex_engine', None) latex_elements_user = globals().get('latex_elements', None) # Remove this once xindy gets installed in Docker image and XINDYOPS # env variable is supported # https://github.com/rtfd/readthedocs-docker-images/pull/98 latex_use_xindy = False chinese = any([ language_user in ('zh_CN', 'zh_TW'), project_language in ('zh_CN', 'zh_TW'), ]) japanese = any([ language_user == 'ja', project_language == 'ja', ]) if chinese: latex_engine = latex_engine_user or 'xelatex' latex_elements_rtd = { 'preamble': '\\usepackage[UTF8]{ctex}\n', } latex_elements = latex_elements_user or latex_elements_rtd elif japanese: latex_engine = latex_engine_user or 'platex' # Make sure our build directory is always excluded exclude_patterns = globals().get('exclude_patterns', []) exclude_patterns.extend(['_build']) [rtd-command-info] start-time: 2022-02-22T20:29:50.107257Z, end-time: 2022-02-22T20:30:15.435340Z, duration: 25, exit-code: 0 python -m sphinx -T -E -W --keep-going -b html -d _build/doctrees -D language=en . _build/html Running Sphinx v3.3.1 loading translations [en]... done making output directory... done loading intersphinx inventory from https://docs.python.org/3/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emodpy/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/idmtools/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/pycomps/en/latest/objects.inv... building [mo]: targets for 0 po files that are out of date building [html]: targets for 58 source files that are out of date updating environment: [new config] 58 added, 0 changed, 0 removed reading sources... [ 1%] emod_api reading sources... [ 3%] emod_api.campaign reading sources... [ 5%] emod_api.channelreports reading sources... [ 6%] emod_api.channelreports.channels reading sources... [ 8%] emod_api.config reading sources... [ 10%] emod_api.config.default_from_schema reading sources... [ 12%] emod_api.config.default_from_schema_no_validation reading sources... [ 13%] emod_api.config.dtk_post_process_adhocevents reading sources... [ 15%] emod_api.config.dtk_pre_process_adhocevents reading sources... [ 17%] emod_api.config.dtk_pre_process_w5ml reading sources... [ 18%] emod_api.config.from_overrides reading sources... [ 20%] emod_api.config.from_poi_and_binary reading sources... [ 22%] emod_api.config.from_schema reading sources... [ 24%] emod_api.config.schema_to_config emod_api.config.schema_to_config is deprecated. Please use emod_api.config.from_schema. reading sources... [ 25%] emod_api.demographics reading sources... [ 27%] emod_api.demographics.BaseInputFile reading sources... [ 29%] emod_api.demographics.Demographics reading sources... [ 31%] emod_api.demographics.DemographicsGenerator reading sources... [ 32%] emod_api.demographics.DemographicsInputDataParsers reading sources... [ 34%] emod_api.demographics.DemographicsTemplates reading sources... [ 36%] emod_api.demographics.Node reading sources... [ 37%] emod_api.demographics.PreDefinedDistributions reading sources... [ 39%] emod_api.demographics.PropertiesAndAttributes reading sources... [ 41%] emod_api.demographics.Updateable reading sources... [ 43%] emod_api.demographics.demographics_utils reading sources... [ 44%] emod_api.demographics.grid_construction reading sources... [ 46%] emod_api.interventions reading sources... [ 48%] emod_api.interventions.common reading sources... [ 50%] emod_api.interventions.import_pressure reading sources... [ 51%] emod_api.interventions.migration reading sources... [ 53%] emod_api.interventions.node_multiplier reading sources... [ 55%] emod_api.interventions.outbreak reading sources... [ 56%] emod_api.interventions.simple_vaccine reading sources... [ 58%] emod_api.interventions.utils reading sources... [ 60%] emod_api.migration reading sources... [ 62%] emod_api.migration.client reading sources... [ 63%] emod_api.migration.client.client reading sources... [ 65%] emod_api.migration.migration reading sources... [ 67%] emod_api.schema reading sources... [ 68%] emod_api.schema.dtk_post_process_schema reading sources... [ 70%] emod_api.schema.get_schema reading sources... [ 72%] emod_api.schema_to_class reading sources... [ 74%] emod_api.serialization reading sources... [ 75%] emod_api.serialization.CensusAndModPop reading sources... [ 77%] emod_api.serialization.SerializedPopulation reading sources... [ 79%] emod_api.serialization.dtkFileSupport reading sources... [ 81%] emod_api.serialization.dtkFileTools reading sources... [ 82%] emod_api.serialization.dtkFileUtility reading sources... [ 84%] emod_api.spatialreports reading sources... [ 86%] emod_api.spatialreports.spatial reading sources... [ 87%] emod_api.tabularoutput reading sources... [ 89%] emod_api.weather reading sources... [ 91%] emod_api.weather.weather reading sources... [ 93%] faq reading sources... [ 94%] glossary reading sources... [ 96%] index reading sources... [ 98%] installation reading sources... [100%] modules looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 1%] emod_api writing output... [ 3%] emod_api.campaign writing output... [ 5%] emod_api.channelreports writing output... [ 6%] emod_api.channelreports.channels writing output... [ 8%] emod_api.config writing output... [ 10%] emod_api.config.default_from_schema writing output... [ 12%] emod_api.config.default_from_schema_no_validation writing output... [ 13%] emod_api.config.dtk_post_process_adhocevents writing output... [ 15%] emod_api.config.dtk_pre_process_adhocevents writing output... [ 17%] emod_api.config.dtk_pre_process_w5ml writing output... [ 18%] emod_api.config.from_overrides writing output... [ 20%] emod_api.config.from_poi_and_binary writing output... [ 22%] emod_api.config.from_schema writing output... [ 24%] emod_api.config.schema_to_config writing output... [ 25%] emod_api.demographics writing output... [ 27%] emod_api.demographics.BaseInputFile writing output... [ 29%] emod_api.demographics.Demographics writing output... [ 31%] emod_api.demographics.DemographicsGenerator writing output... [ 32%] emod_api.demographics.DemographicsInputDataParsers writing output... [ 34%] emod_api.demographics.DemographicsTemplates writing output... [ 36%] emod_api.demographics.Node writing output... [ 37%] emod_api.demographics.PreDefinedDistributions writing output... [ 39%] emod_api.demographics.PropertiesAndAttributes writing output... [ 41%] emod_api.demographics.Updateable writing output... [ 43%] emod_api.demographics.demographics_utils writing output... [ 44%] emod_api.demographics.grid_construction writing output... [ 46%] emod_api.interventions writing output... [ 48%] emod_api.interventions.common writing output... [ 50%] emod_api.interventions.import_pressure writing output... [ 51%] emod_api.interventions.migration writing output... [ 53%] emod_api.interventions.node_multiplier writing output... [ 55%] emod_api.interventions.outbreak writing output... [ 56%] emod_api.interventions.simple_vaccine writing output... [ 58%] emod_api.interventions.utils writing output... [ 60%] emod_api.migration writing output... [ 62%] emod_api.migration.client writing output... [ 63%] emod_api.migration.client.client writing output... [ 65%] emod_api.migration.migration writing output... [ 67%] emod_api.schema writing output... [ 68%] emod_api.schema.dtk_post_process_schema writing output... [ 70%] emod_api.schema.get_schema writing output... [ 72%] emod_api.schema_to_class writing output... [ 74%] emod_api.serialization writing output... [ 75%] emod_api.serialization.CensusAndModPop writing output... [ 77%] emod_api.serialization.SerializedPopulation writing output... [ 79%] emod_api.serialization.dtkFileSupport writing output... [ 81%] emod_api.serialization.dtkFileTools writing output... [ 82%] emod_api.serialization.dtkFileUtility writing output... [ 84%] emod_api.spatialreports writing output... [ 86%] emod_api.spatialreports.spatial writing output... [ 87%] emod_api.tabularoutput writing output... [ 89%] emod_api.weather writing output... [ 91%] emod_api.weather.weather writing output... [ 93%] faq writing output... [ 94%] glossary writing output... [ 96%] index writing output... [ 98%] installation writing output... [100%] modules generating indices... genindex py-modindex done writing additional pages... search opensearch done copying static files... done copying extra files... done dumping search index in English (code: en)... done dumping object inventory... done build succeeded. The HTML pages are in _build/html. Updating searchtools for Read the Docs search... [rtd-command-info] start-time: 2022-02-22T20:30:15.659602Z, end-time: 2022-02-22T20:30:23.795368Z, duration: 8, exit-code: 0 python -m sphinx -T -E -W --keep-going -b readthedocssinglehtmllocalmedia -d _build/doctrees -D language=en . _build/localmedia Running Sphinx v3.3.1 loading translations [en]... done making output directory... done loading intersphinx inventory from https://docs.python.org/3/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emodpy/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/idmtools/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/pycomps/en/latest/objects.inv... building [mo]: targets for 0 po files that are out of date building [readthedocssinglehtmllocalmedia]: all documents updating environment: [new config] 58 added, 0 changed, 0 removed reading sources... [ 1%] emod_api reading sources... [ 3%] emod_api.campaign reading sources... [ 5%] emod_api.channelreports reading sources... [ 6%] emod_api.channelreports.channels reading sources... [ 8%] emod_api.config reading sources... [ 10%] emod_api.config.default_from_schema reading sources... [ 12%] emod_api.config.default_from_schema_no_validation reading sources... [ 13%] emod_api.config.dtk_post_process_adhocevents reading sources... [ 15%] emod_api.config.dtk_pre_process_adhocevents reading sources... [ 17%] emod_api.config.dtk_pre_process_w5ml reading sources... [ 18%] emod_api.config.from_overrides reading sources... [ 20%] emod_api.config.from_poi_and_binary reading sources... [ 22%] emod_api.config.from_schema reading sources... [ 24%] emod_api.config.schema_to_config emod_api.config.schema_to_config is deprecated. Please use emod_api.config.from_schema. reading sources... [ 25%] emod_api.demographics reading sources... [ 27%] emod_api.demographics.BaseInputFile reading sources... [ 29%] emod_api.demographics.Demographics reading sources... [ 31%] emod_api.demographics.DemographicsGenerator reading sources... [ 32%] emod_api.demographics.DemographicsInputDataParsers reading sources... [ 34%] emod_api.demographics.DemographicsTemplates reading sources... [ 36%] emod_api.demographics.Node reading sources... [ 37%] emod_api.demographics.PreDefinedDistributions reading sources... [ 39%] emod_api.demographics.PropertiesAndAttributes reading sources... [ 41%] emod_api.demographics.Updateable reading sources... [ 43%] emod_api.demographics.demographics_utils reading sources... [ 44%] emod_api.demographics.grid_construction reading sources... [ 46%] emod_api.interventions reading sources... [ 48%] emod_api.interventions.common reading sources... [ 50%] emod_api.interventions.import_pressure reading sources... [ 51%] emod_api.interventions.migration reading sources... [ 53%] emod_api.interventions.node_multiplier reading sources... [ 55%] emod_api.interventions.outbreak reading sources... [ 56%] emod_api.interventions.simple_vaccine reading sources... [ 58%] emod_api.interventions.utils reading sources... [ 60%] emod_api.migration reading sources... [ 62%] emod_api.migration.client reading sources... [ 63%] emod_api.migration.client.client reading sources... [ 65%] emod_api.migration.migration reading sources... [ 67%] emod_api.schema reading sources... [ 68%] emod_api.schema.dtk_post_process_schema reading sources... [ 70%] emod_api.schema.get_schema reading sources... [ 72%] emod_api.schema_to_class reading sources... [ 74%] emod_api.serialization reading sources... [ 75%] emod_api.serialization.CensusAndModPop reading sources... [ 77%] emod_api.serialization.SerializedPopulation reading sources... [ 79%] emod_api.serialization.dtkFileSupport reading sources... [ 81%] emod_api.serialization.dtkFileTools reading sources... [ 82%] emod_api.serialization.dtkFileUtility reading sources... [ 84%] emod_api.spatialreports reading sources... [ 86%] emod_api.spatialreports.spatial reading sources... [ 87%] emod_api.tabularoutput reading sources... [ 89%] emod_api.weather reading sources... [ 91%] emod_api.weather.weather reading sources... [ 93%] faq reading sources... [ 94%] glossary reading sources... [ 96%] index reading sources... [ 98%] installation reading sources... [100%] modules looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done assembling single document... installation faq modules emod_api emod_api.channelreports emod_api.channelreports.channels emod_api.config emod_api.config.default_from_schema emod_api.config.default_from_schema_no_validation emod_api.config.dtk_post_process_adhocevents emod_api.config.dtk_pre_process_adhocevents emod_api.config.dtk_pre_process_w5ml emod_api.config.from_overrides emod_api.config.from_poi_and_binary emod_api.config.from_schema emod_api.config.schema_to_config emod_api.demographics emod_api.demographics.BaseInputFile emod_api.demographics.Demographics emod_api.demographics.DemographicsGenerator emod_api.demographics.DemographicsInputDataParsers emod_api.demographics.DemographicsTemplates emod_api.demographics.Node emod_api.demographics.PreDefinedDistributions emod_api.demographics.PropertiesAndAttributes emod_api.demographics.Updateable emod_api.demographics.demographics_utils emod_api.demographics.grid_construction emod_api.interventions emod_api.interventions.common emod_api.interventions.import_pressure emod_api.interventions.migration emod_api.interventions.node_multiplier emod_api.interventions.outbreak emod_api.interventions.simple_vaccine emod_api.interventions.utils emod_api.migration emod_api.migration.client emod_api.migration.client.client emod_api.migration.migration emod_api.schema emod_api.schema.dtk_post_process_schema emod_api.schema.get_schema emod_api.serialization emod_api.serialization.CensusAndModPop emod_api.serialization.SerializedPopulation emod_api.serialization.dtkFileSupport emod_api.serialization.dtkFileTools emod_api.serialization.dtkFileUtility emod_api.spatialreports emod_api.spatialreports.spatial emod_api.tabularoutput emod_api.weather emod_api.weather.weather emod_api.campaign emod_api.schema_to_class glossary done writing... done writing additional files... opensearchdone copying static files... done copying extra files... done dumping object inventory... done build succeeded. The HTML page is in _build/localmedia. Updating searchtools for Read the Docs search... [rtd-command-info] start-time: 2022-02-22T20:30:24.008331Z, end-time: 2022-02-22T20:30:26.239466Z, duration: 2, exit-code: 0 python -m sphinx -b latex -D language=en -d _build/doctrees . _build/latex Running Sphinx v3.3.1 loading translations [en]... done making output directory... done loading pickled environment... done building [mo]: targets for 0 po files that are out of date building [latex]: all documents updating environment: 0 added, 1 changed, 0 removed reading sources... [100%] modules looking for now-outdated files... none found pickling environment... done checking consistency... done processing emod-api-docs.tex... index installation faq modules emod_api emod_api.channelreports emod_api.channelreports.channels emod_api.config emod_api.config.default_from_schema emod_api.config.default_from_schema_no_validation emod_api.config.dtk_post_process_adhocevents emod_api.config.dtk_pre_process_adhocevents emod_api.config.dtk_pre_process_w5ml emod_api.config.from_overrides emod_api.config.from_poi_and_binary emod_api.config.from_schema emod_api.config.schema_to_config emod_api.demographics emod_api.demographics.BaseInputFile emod_api.demographics.Demographics emod_api.demographics.DemographicsGenerator emod_api.demographics.DemographicsInputDataParsers emod_api.demographics.DemographicsTemplates emod_api.demographics.Node emod_api.demographics.PreDefinedDistributions emod_api.demographics.PropertiesAndAttributes emod_api.demographics.Updateable emod_api.demographics.demographics_utils emod_api.demographics.grid_construction emod_api.interventions emod_api.interventions.common emod_api.interventions.import_pressure emod_api.interventions.migration emod_api.interventions.node_multiplier emod_api.interventions.outbreak emod_api.interventions.simple_vaccine emod_api.interventions.utils emod_api.migration emod_api.migration.client emod_api.migration.client.client emod_api.migration.migration emod_api.schema emod_api.schema.dtk_post_process_schema emod_api.schema.get_schema emod_api.serialization emod_api.serialization.CensusAndModPop emod_api.serialization.SerializedPopulation emod_api.serialization.dtkFileSupport emod_api.serialization.dtkFileTools emod_api.serialization.dtkFileUtility emod_api.spatialreports emod_api.spatialreports.spatial emod_api.tabularoutput emod_api.weather emod_api.weather.weather emod_api.campaign emod_api.schema_to_class glossary resolving references... done writing... done copying TeX support files... copying TeX support files... done build succeeded. The LaTeX files are in _build/latex. Run 'make' in that directory to run these through (pdf)latex (use `make latexpdf' here to do that automatically). WARNING: Missing searchtools: /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/checkouts/latest/docs/_build/latex/_static/searchtools.js [rtd-command-info] start-time: 2022-02-22T20:30:26.521845Z, end-time: 2022-02-22T20:30:26.585515Z, duration: 0, exit-code: 0 cat latexmkrc $latex = 'latex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $pdflatex = 'pdflatex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $lualatex = 'lualatex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $xelatex = 'xelatex --no-pdf ' . $ENV{'LATEXOPTS'} . ' %O %S'; $makeindex = 'makeindex -s python.ist %O -o %D %S'; add_cus_dep( "glo", "gls", 0, "makeglo" ); sub makeglo { return system( "makeindex -s gglo.ist -o '$_[0].gls' '$_[0].glo'" ); } [rtd-command-info] start-time: 2022-02-22T20:30:26.780258Z, end-time: 2022-02-22T20:30:37.780010Z, duration: 10, exit-code: 0 latexmk -r latexmkrc -pdf -f -dvi- -ps- -jobname=institute-for-disease-modeling-emod-api -interaction=nonstopmode Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 1, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 2, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 3, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 4, chunk 1. Subroutine makeglo redefined at (eval 11) line 7, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 1, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 2, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 3, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 4, chunk 1. Latexmk: This is Latexmk, John Collins, 1 January 2015, version: 4.41. File::Glob::glob() will disappear in perl 5.30. Use File::Glob::bsd_glob() instead. at /usr/bin/latexmk line 7482. Rule 'pdflatex': Rules & subrules not known to be previously run: pdflatex Rule 'pdflatex': The following rules & subrules became out-of-date: 'pdflatex' ------------ Run number 1 of rule 'pdflatex' ------------ ------------ Running 'pdflatex -interaction=nonstopmode -recorder --jobname="institute-for-disease-modeling-emod-api" "emod-api-docs.tex"' ------------ Latexmk: applying rule 'pdflatex'... This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./emod-api-docs.tex LaTeX2e <2017-04-15> Babel <3.18> and hyphenation patterns for 84 language(s) loaded. 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(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/hypcap.sty) (./sphinxmessages.sty) Writing index file institute-for-disease-modeling-emod-api.idx (./institute-for-disease-modeling-emod-api.aux) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1ptm.fd) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd)<><><><> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}] [2] [1] [2] [1] [2] Chapter 1. (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) [3] [4] Chapter 2. Underfull \hbox (badness 10000) in paragraph at lines 221--225 []\T1/ptm/m/n/10 Sure. [5] [6] Chapter 3. Underfull \hbox (badness 10000) in paragraph at lines 234--236 []\T1/ptm/m/n/10 python -m Underfull \hbox (badness 10000) in paragraph at lines 237--239 []\T1/ptm/m/n/10 python -m [7] Underfull \hbox (badness 10000) in paragraph at lines 363--363 []\T1/ptm/m/it/10 filename: [][]str[][] = None\T1/ptm/m/n/10 , [8] Overfull \hbox (73.14464pt too wide) in paragraph at lines 481--481 []\T1/ptm/m/it/10 schema_path_in\T1/ptm/m/n/10 , Overfull \hbox (27.46486pt too wide) in paragraph at lines 481--481 \T1/ptm/m/it/10 subn- Overfull \hbox (43.09444pt too wide) in paragraph at lines 481--481 \T1/ptm/m/it/10 ode_list\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 484--486 []\T1/ptm/m/n/10 config = json.load(open(^^Pdefault_config.json^^Q), ob-ject_ho ok=s2c.ReadOnlyDict) os.remove( ^^Pde- Overfull \hbox (109.14464pt too wide) in paragraph at lines 492--492 []\T1/ptm/m/it/10 path_to_schema\T1/ptm/m/n/10 , Overfull \hbox (123.11464pt too wide) in paragraph at lines 492--492 \T1/ptm/m/it/10 schema_node=True\T1/ptm/m/n/10 , Overfull \hbox (99.29454pt too wide) in paragraph at lines 492--492 \T1/ptm/m/it/10 as_rod=False\T1/ptm/m/n/10 , Overfull \hbox (57.35486pt too wide) in paragraph at lines 492--492 \T1/ptm/m/it/10 out- Overfull \hbox (126.76451pt too wide) in paragraph at lines 492--492 \T1/ptm/m/it/10 put_filename=None\T1/pcr/m/n/10 ) Overfull \hbox (79.14464pt too wide) in paragraph at lines 505--505 []\T1/ptm/m/it/10 path_to_schema\T1/ptm/m/n/10 , Overfull \hbox (27.35486pt too wide) in paragraph at lines 505--505 \T1/ptm/m/it/10 out- Overfull \hbox (152.67387pt too wide) in paragraph at lines 505--505 \T1/ptm/m/it/10 put_filename=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 default_config.j son\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (96.61464pt too wide) in paragraph at lines 505--505 \T1/ptm/m/it/10 schema_node=True\T1/pcr/m/n/10 ) Overfull \hbox (47.68495pt too wide) in paragraph at lines 517--517 []\T1/ptm/m/it/10 config\T1/pcr/m/n/10 ) Overfull \hbox (142.8247pt too wide) in paragraph at lines 531--531 []\T1/ptm/m/it/10 config_path=None\T1/ptm/m/n/10 , Overfull \hbox (119.49449pt too wide) in paragraph at lines 531--531 \T1/ptm/m/it/10 set_fn=None\T1/ptm/m/n/10 , Overfull \hbox (83.01491pt too wide) in paragraph at lines 531--531 \T1/ptm/m/it/10 con- Overfull \hbox (109.10487pt too wide) in paragraph at lines 531--531 \T1/ptm/m/it/10 fig=None\T1/pcr/m/n/10 ) Overfull \hbox (126.96484pt too wide) in paragraph at lines 560--560 []\T1/ptm/m/it/10 config_path\T1/ptm/m/n/10 , Overfull \hbox (103.63463pt too wide) in paragraph at lines 560--560 \T1/ptm/m/it/10 set_fn\T1/ptm/m/n/10 , Overfull \hbox (95.01491pt too wide) in paragraph at lines 560--560 \T1/ptm/m/it/10 con- Overfull \hbox (133.8048pt too wide) in paragraph at lines 560--560 \T1/ptm/m/it/10 fig_out_path\T1/pcr/m/n/10 ) [9] Overfull \hbox (7.52466pt too wide) in paragraph at lines 598--598 \T1/ptm/m/it/10 hoc_events\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 628--628 []\T1/ptm/m/it/10 configjson_path\T1/ptm/m/n/10 , Overfull \hbox (63.52425pt too wide) in paragraph at lines 657--657 []\T1/ptm/m/it/10 start_config_dict\T1/ptm/m/n/10 , Overfull \hbox (71.87448pt too wide) in paragraph at lines 657--657 \T1/ptm/m/it/10 poi_set_param_fn\T1/pcr/m/n/10 ) Overfull \hbox (66.30441pt too wide) in paragraph at lines 666--666 []\T1/ptm/m/it/10 start_config_path\T1/ptm/m/n/10 , Overfull \hbox (71.87448pt too wide) in paragraph at lines 666--666 \T1/ptm/m/it/10 poi_set_param_fn\T1/pcr/m/n/10 ) Overfull \hbox (18.36475pt too wide) in paragraph at lines 675--675 []\T1/ptm/m/it/10 schema_path\T1/ptm/m/n/10 , Overfull \hbox (41.87448pt too wide) in paragraph at lines 675--675 \T1/ptm/m/it/10 poi_set_param_fn\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 684--684 []\T1/ptm/m/it/10 eradication_path\T1/ptm/m/n/10 , [10] Underfull \hbox (badness 10000) in paragraph at lines 732--734 []\T1/ptm/m/n/10 builder = s2c.SchemaConfigBuilder( Underfull \hbox (badness 10000) in paragraph at lines 741--741 []\T1/ptm/m/it/10 schema_name=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 schema.json\TS1 /ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 741--741 \T1/ptm/m/it/10 model=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 GENERIC_SIM\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 741--741 \T1/ptm/m/it/10 con-fig_out=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 config.json\TS1/p tm/m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (28.28418pt too wide) in paragraph at lines 752--752 []\T1/ptm/m/it/10 schema_name=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 schema.json\TS1 /ptm/m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (11.09424pt too wide) in paragraph at lines 752--752 \T1/ptm/m/it/10 model=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 GENERIC_SIM\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 752--752 \T1/ptm/m/it/10 con- Underfull \hbox (badness 10000) in paragraph at lines 752--752 \T1/ptm/m/it/10 fig_out=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 config.json\TS1/ptm/m /it/10 '\T1/ptm/m/n/10 , LaTeX Warning: Hyper reference `emod_api.config.from_schema:emod_api.config.fro m_schema.SchemaConfigBuilder' on page 11 undefined on input line 753. [11] Underfull \hbox (badness 10000) in paragraph at lines 795--795 \T1/ptm/m/it/10 name=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Erewhon\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 819--819 []\T1/ptm/m/it/10 tot_pop\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 819--819 \T1/ptm/m/it/10 num_nodes\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 828--828 []\T1/ptm/m/it/10 tot_pop=1000000\T1/ptm/m/n/10 , \T1/ptm/m/it/10 num_nodes=100 \T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 837--837 []\T1/ptm/m/it/10 input_file\T1/ptm/m/n/10 , \T1/ptm/m/it/10 res=0.008333333333 333333\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 845--845 []\T1/ptm/m/it/10 pop_filename_in\T1/ptm/m/n/10 , Overfull \hbox (28.44351pt too wide) in paragraph at lines 845--845 \T1/ptm/m/it/10 pop_filename_out=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 spatial_grid ded_pop_dir\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 851--851 []\T1/ptm/m/it/10 nodes\T1/ptm/m/n/10 , \T1/ptm/m/it/10 idref=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Gridded Underfull \hbox (badness 10000) in paragraph at lines 851--851 \T1/ptm/m/it/10 world grump2.5arcmin\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , LaTeX Warning: Hyper reference `emod_api.demographics.BaseInputFile:emod_api.de mographics.BaseInputFile.BaseInputFile' on page 12 undefined on input line 852. [12] LaTeX Warning: Hyper reference `emod_api.demographics.PropertiesAndAttributes:e mod_api.demographics.PropertiesAndAttributes.IndividualAttributes.MortalityDist ribution' on page 13 undefined on input line 978. Overfull \hbox (149.53976pt too wide) in paragraph at lines 978--978 []\T1/ptm/m/it/10 distribution: \T1/ptm/m/n/10 emod_api.demographics.Properties AndAttributes.IndividualAttributes.MortalityDistribution LaTeX Warning: Hyper reference `emod_api.demographics.PropertiesAndAttributes:e mod_api.demographics.PropertiesAndAttributes.IndividualAttributes.AgeDistributi on' on page 13 undefined on input line 993. Overfull \hbox (94.92032pt too wide) in paragraph at lines 993--993 []\T1/ptm/m/it/10 distribution: \T1/ptm/m/n/10 emod_api.demographics.Properties AndAttributes.IndividualAttributes.AgeDistribution, [13] Underfull \hbox (badness 10000) in paragraph at lines 1064--1064 []\T1/ptm/m/it/10 CrudeBirthRate=0.04\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Crude-Mor - Underfull \hbox (badness 10000) in paragraph at lines 1153--1153 []\T1/ptm/m/it/10 file_male\T1/ptm/m/n/10 , \T1/ptm/m/it/10 file_female\T1/ptm/ m/n/10 , \T1/ptm/m/it/10 in-ter-val_fit=[1970, 1980]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1165--1165 []\T1/ptm/m/it/10 nodes=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1165--1165 \T1/ptm/m/it/10 meta_data: [][]dict[][] Overfull \hbox (7.52411pt too wide) in paragraph at lines 1165--1165 \T1/ptm/m/it/10 ual_attributes=None\T1/ptm/m/n/10 , Overfull \hbox (14.18416pt too wide) in paragraph at lines 1165--1165 \T1/ptm/m/it/10 node_attributes=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1165--1165 \T1/ptm/m/it/10 mor-tal- Overfull \hbox (16.5839pt too wide) in paragraph at lines 1165--1165 \T1/ptm/m/it/10 ity_distribution=None\T1/pcr/m/n/10 ) [14] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pcr.fd) Overfull \hbox (18.60422pt too wide) in paragraph at lines 1226--1226 []\T1/ptm/m/it/10 res_in_arcsec\T1/pcr/m/n/10 ) Overfull \hbox (13.07484pt too wide) in paragraph at lines 1245--1245 []\T1/ptm/m/it/10 nodes\T1/ptm/m/n/10 , Overfull \hbox (5.01491pt too wide) in paragraph at lines 1245--1245 \T1/ptm/m/it/10 con- Overfull \hbox (12.23463pt too wide) in paragraph at lines 1245--1245 \T1/ptm/m/it/10 cerns: Overfull \hbox (2.79494pt too wide) in paragraph at lines 1245--1245 \T1/ptm/m/it/10 Op- Overfull \hbox (457.54115pt too wide) in paragraph at lines 1245--1245 \T1/ptm/m/it/10 tional[Union[emod_api.dtk_tools.demographics.DemographicsGenera torConcern.DemographicsGeneratorConcern, Overfull \hbox (429.49101pt too wide) in paragraph at lines 1245--1245 \T1/ptm/m/it/10 List[emod_api.dtk_tools.demographics.DemographicsGeneratorConce rn.DemographicsGeneratorConcern]]] Underfull \hbox (badness 10000) in paragraph at lines 1245--1245 \T1/ptm/m/it/10 = Overfull \hbox (10.85487pt too wide) in paragraph at lines 1245--1245 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (84.4637pt too wide) in paragraph at lines 1245--1245 \T1/ptm/m/it/10 res_in_arcsec=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 custom\TS1/ptm/ m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (115.46402pt too wide) in paragraph at lines 1245--1245 \T1/ptm/m/it/10 node_id_from_lat_long=False\T1/pcr/m/n/10 ) [15] Underfull \hbox (badness 10000) in paragraph at lines 1330--1330 []\T1/ptm/m/it/10 df\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-mo-graph- Underfull \hbox (badness 10000) in paragraph at lines 1330--1330 \T1/ptm/m/it/10 ics_filename: Op- Underfull \hbox (badness 10000) in paragraph at lines 1330--1330 \T1/ptm/m/it/10 tional[[][]str[][]] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1330--1330 \T1/ptm/m/it/10 con-cerns: Op- Overfull \hbox (379.54115pt too wide) in paragraph at lines 1330--1330 \T1/ptm/m/it/10 tional[Union[emod_api.dtk_tools.demographics.DemographicsGenera torConcern.DemographicsGeneratorConcern, Overfull \hbox (351.49101pt too wide) in paragraph at lines 1330--1330 \T1/ptm/m/it/10 List[emod_api.dtk_tools.demographics.DemographicsGeneratorConce rn.DemographicsGeneratorConcern]]] Underfull \hbox (badness 10000) in paragraph at lines 1330--1330 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Overfull \hbox (6.4637pt too wide) in paragraph at lines 1330--1330 \T1/ptm/m/it/10 res_in_arcsec=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 custom\TS1/ptm/ m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (30.83415pt too wide) in paragraph at lines 1330--1330 \T1/ptm/m/it/10 node_id_from_lat_long=True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1330--1330 \T1/ptm/m/it/10 de-fault_population: Underfull \hbox (badness 10000) in paragraph at lines 1330--1330 [][]\T1/ptm/m/it/10 int[][] = 1000\T1/ptm/m/n/10 , Overfull \hbox (79.21327pt too wide) in paragraph at lines 1330--1330 \T1/ptm/m/it/10 load_other_columns_as_attributes=False\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1330--1330 \T1/ptm/m/it/10 tional[List[[][]str[][]]] Underfull \hbox (badness 10000) in paragraph at lines 1330--1330 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ex- Underfull \hbox (badness 10000) in paragraph at lines 1330--1330 \T1/ptm/m/it/10 clude_columns: Underfull \hbox (badness 10000) in paragraph at lines 1330--1330 \T1/ptm/m/it/10 Op-tional[List[[][]str[][]]] Underfull \hbox (badness 10000) in paragraph at lines 1330--1330 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Overfull \hbox (0.89452pt too wide) in paragraph at lines 1330--1330 \T1/ptm/m/it/10 nodeid_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1330--1330 \T1/ptm/m/it/10 Op-tional[[][]str[][]] Underfull \hbox (badness 10000) in paragraph at lines 1330--1330 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lat-i- Underfull \hbox (badness 10000) in paragraph at lines 1330--1330 \T1/ptm/m/it/10 tude_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1330--1330 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 lat\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lon-gi- Underfull \hbox (badness 10000) in paragraph at lines 1330--1330 \T1/ptm/m/it/10 tude_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1330--1330 \T1/ptm/m/it/10 tion_column_name: [16] Overfull \hbox (54.94496pt too wide) in paragraph at lines 1345--1346 []\T1/pcr/b/n/10 apply. If not specified, we use the DefaultWorldBankEquilibriu mConcern [17] Underfull \hbox (badness 10000) in paragraph at lines 1393--1393 []\T1/ptm/m/it/10 population_input_file: Underfull \hbox (badness 10000) in paragraph at lines 1393--1393 [][]\T1/ptm/m/it/10 str[][]\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-mo-graph- Underfull \hbox (badness 7851) in paragraph at lines 1393--1393 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 con-cerns: Op- Overfull \hbox (349.54115pt too wide) in paragraph at lines 1393--1393 \T1/ptm/m/it/10 tional[Union[emod_api.dtk_tools.demographics.DemographicsGenera torConcern.DemographicsGeneratorConcern, Overfull \hbox (321.49101pt too wide) in paragraph at lines 1393--1393 \T1/ptm/m/it/10 List[emod_api.dtk_tools.demographics.DemographicsGeneratorConce rn.DemographicsGeneratorConcern]]] Underfull \hbox (badness 10000) in paragraph at lines 1393--1393 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1393--1393 \T1/ptm/m/it/10 res_in_arcsec=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 custom\TS1/ptm/ m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (0.83415pt too wide) in paragraph at lines 1393--1393 \T1/ptm/m/it/10 node_id_from_lat_long=True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1393--1393 \T1/ptm/m/it/10 de-fault_population: Underfull \hbox (badness 10000) in paragraph at lines 1393--1393 [][]\T1/ptm/m/it/10 int[][] = 1000\T1/ptm/m/n/10 , Overfull \hbox (49.21327pt too wide) in paragraph at lines 1393--1393 \T1/ptm/m/it/10 load_other_columns_as_attributes=False\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1393--1393 \T1/ptm/m/it/10 in-clude_columns: Op- Underfull \hbox (badness 10000) in paragraph at lines 1393--1393 \T1/ptm/m/it/10 tional[List[[][]str[][]]] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1393--1393 \T1/ptm/m/it/10 ex-clude_columns: Op- Underfull \hbox (badness 10000) in paragraph at lines 1393--1393 \T1/ptm/m/it/10 tional[List[[][]str[][]]] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1393--1393 \T1/ptm/m/it/10 nodeid_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1393--1393 \T1/ptm/m/it/10 Op-tional[[][]str[][]] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1393--1393 \T1/ptm/m/it/10 lat-i-tude_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1393--1393 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 lat\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lon-gi- Underfull \hbox (badness 10000) in paragraph at lines 1393--1393 \T1/ptm/m/it/10 tude_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1393--1393 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 lon\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pop-u-la- Underfull \hbox (badness 6236) in paragraph at lines 1393--1393 \T1/ptm/m/it/10 tion_column_name: [][]str[][] = Overfull \hbox (54.94496pt too wide) in paragraph at lines 1408--1409 []\T1/pcr/b/n/10 apply. If not specified, we use the DefaultWorldBankEquilibriu mConcern [18] Overfull \hbox (6.3048pt too wide) in paragraph at lines 1464--1464 []\T1/ptm/m/it/10 lat\T1/ptm/m/n/10 , Overfull \hbox (13.5249pt too wide) in paragraph at lines 1464--1464 \T1/ptm/m/it/10 long\T1/ptm/m/n/10 , Overfull \hbox (115.34473pt too wide) in paragraph at lines 1464--1464 \T1/ptm/m/it/10 res=0.008333333333333333\T1/pcr/m/n/10 ) Overfull \hbox (37.09444pt too wide) in paragraph at lines 1470--1470 []\T1/ptm/m/it/10 nodelist\T1/pcr/m/n/10 ) Overfull \hbox (11.74474pt too wide) in paragraph at lines 1476--1476 []\T1/ptm/m/it/10 node_info\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1476--1476 \T1/ptm/m/it/10 De- Underfull \hbox (badness 10000) in paragraph at lines 1476--1476 \T1/ptm/m/it/10 moDf\T1/ptm/m/n/10 , Overfull \hbox (91.34473pt too wide) in paragraph at lines 1476--1476 \T1/ptm/m/it/10 res=0.008333333333333333\T1/pcr/m/n/10 ) Overfull \hbox (71.74474pt too wide) in paragraph at lines 1482--1482 []\T1/ptm/m/it/10 node_info\T1/ptm/m/n/10 , Overfull \hbox (41.2549pt too wide) in paragraph at lines 1482--1482 \T1/ptm/m/it/10 ex- Overfull \hbox (118.90427pt too wide) in paragraph at lines 1482--1482 \T1/ptm/m/it/10 tra_data_columns=[]\T1/ptm/m/n/10 , Overfull \hbox (151.34473pt too wide) in paragraph at lines 1482--1482 \T1/ptm/m/it/10 res=0.008333333333333333\T1/pcr/m/n/10 ) [19] Underfull \hbox (badness 10000) in paragraph at lines 1522--1524 []\T1/ptm/m/n/10 json ob-ject aka python dict that can be di-rectly passed to D e-mo-graph- Underfull \hbox (badness 10000) in paragraph at lines 1535--1535 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1535--1535 \T1/ptm/m/it/10 mean=0.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1547--1549 []\T1/ptm/m/n/10 json ob-ject aka python dict that can be di-rectly passed to D e-mo-graph- Underfull \hbox (badness 10000) in paragraph at lines 1560--1560 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1566--1568 []\T1/ptm/m/n/10 json ob-ject aka python dict that can be di-rectly passed to D e-mo-graph- Underfull \hbox (badness 10000) in paragraph at lines 1598--1598 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , \T1/ptm/m/it/10 low_prev\T1/ptm/m/n/10 , Underfull \hbox (badness 5091) in paragraph at lines 1598--1598 \T1/ptm/m/it/10 high_prev\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-scrip- Overfull \hbox (22.30493pt too wide) in paragraph at lines 1610--1610 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Overfull \hbox (7.6847pt too wide) in paragraph at lines 1610--1610 \T1/ptm/m/it/10 set- Overfull \hbox (34.0548pt too wide) in paragraph at lines 1610--1610 \T1/ptm/m/it/10 ting=1.0\T1/pcr/m/n/10 ) Overfull \hbox (10.30493pt too wide) in paragraph at lines 1616--1616 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1616--1616 \T1/ptm/m/it/10 pro- Overfull \hbox (58.54413pt too wide) in paragraph at lines 1616--1616 \T1/ptm/m/it/10 tected_setting=0.0\T1/ptm/m/n/10 , Overfull \hbox (9.20457pt too wide) in paragraph at lines 1616--1616 \T1/ptm/m/it/10 thresh- Overfull \hbox (53.51486pt too wide) in paragraph at lines 1616--1616 \T1/ptm/m/it/10 old_age=1825.0\T1/pcr/m/n/10 ) Overfull \hbox (46.30493pt too wide) in paragraph at lines 1622--1622 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Overfull \hbox (42.23488pt too wide) in paragraph at lines 1622--1622 \T1/ptm/m/it/10 mean- Overfull \hbox (44.91478pt too wide) in paragraph at lines 1622--1622 \T1/ptm/m/it/10 AgeAt- Overfull \hbox (28.90492pt too wide) in paragraph at lines 1622--1622 \T1/ptm/m/it/10 In- Overfull \hbox (32.23474pt too wide) in paragraph at lines 1622--1622 \T1/ptm/m/it/10 fec- Overfull \hbox (58.0548pt too wide) in paragraph at lines 1622--1622 \T1/ptm/m/it/10 tion=2.5\T1/pcr/m/n/10 ) [20] Overfull \hbox (55.80493pt too wide) in paragraph at lines 1628--1628 []\T1/ptm/m/it/10 demog\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1634--1634 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1634--1634 \T1/ptm/m/it/10 age_bins\T1/ptm/m/n/10 , Overfull \hbox (25.80493pt too wide) in paragraph at lines 1656--1656 []\T1/ptm/m/it/10 demog\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1674--1675 []\T1/pcr/b/n/10 "15-19", etc. up to "45-49", and a column named "Years" with LaTeX Warning: Hyper reference `emod_api.demographics.PropertiesAndAttributes:e mod_api.demographics.PropertiesAndAttributes.IndividualAttributes' on page 21 u ndefined on input line 1706. LaTeX Warning: Hyper reference `emod_api.demographics.PropertiesAndAttributes:e mod_api.demographics.PropertiesAndAttributes.IndividualProperties' on page 21 u ndefined on input line 1706. LaTeX Warning: Hyper reference `emod_api.demographics.PropertiesAndAttributes:e mod_api.demographics.PropertiesAndAttributes.NodeAttributes' on page 21 undefin ed on input line 1706. Overfull \hbox (64.51184pt too wide) in paragraph at lines 1706--1706 \T1/ptm/m/n/10 emod_api.demographics.PropertiesAndAttributes.IndividualAttribut es Underfull \hbox (badness 10000) in paragraph at lines 1706--1706 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in-di-vid-ual_properties : Overfull \hbox (65.26187pt too wide) in paragraph at lines 1706--1706 \T1/ptm/m/n/10 emod_api.demographics.PropertiesAndAttributes.IndividualProperti es Underfull \hbox (badness 10000) in paragraph at lines 1706--1706 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 node_attributes: Overfull \hbox (45.31218pt too wide) in paragraph at lines 1706--1706 \T1/ptm/m/n/10 emod_api.demographics.PropertiesAndAttributes.NodeAttributes LaTeX Warning: Hyper reference `emod_api.demographics.Updateable:emod_api.demog raphics.Updateable.Updateable' on page 21 undefined on input line 1707. [21] LaTeX Warning: Hyper reference `emod_api.demographics.Node:emod_api.demographic s.Node.Node' on page 22 undefined on input line 1785. Overfull \hbox (22.9045pt too wide) in paragraph at lines 1800--1800 []\T1/ptm/m/it/10 nodeid\T1/ptm/m/n/10 , \T1/ptm/m/it/10 res_in_deg=0.041666666 666666664\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1806--1806 []\T1/ptm/m/it/10 lat\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lon\T1/ptm/m/n/10 , Overfull \hbox (9.16464pt too wide) in paragraph at lines 1806--1806 \T1/ptm/m/it/10 res_in_deg=0.041666666666666664\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1812--1812 []\T1/ptm/m/it/10 lat\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lon\T1/ptm/m/n/10 , Overfull \hbox (45.7243pt too wide) in paragraph at lines 1833--1833 []\T1/ptm/m/it/10 distribution\T1/pcr/m/n/10 ) [22] Overfull \hbox (59.95372pt too wide) in paragraph at lines 1862--1862 []\T1/ptm/m/it/10 initial_distribution: Overfull \hbox (21.8143pt too wide) in paragraph at lines 1862--1862 \T1/ptm/m/it/10 List[[][]float[][]] Underfull \hbox (badness 10000) in paragraph at lines 1862--1862 \T1/ptm/m/it/10 = Overfull \hbox (4.85487pt too wide) in paragraph at lines 1862--1862 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (3.0149pt too wide) in paragraph at lines 1862--1862 \T1/ptm/m/it/10 prop- Overfull \hbox (27.15454pt too wide) in paragraph at lines 1862--1862 \T1/ptm/m/it/10 erty=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1862--1862 \T1/ptm/m/it/10 val- Underfull \hbox (badness 10000) in paragraph at lines 1862--1862 \T1/ptm/m/it/10 ues: Overfull \hbox (21.8143pt too wide) in paragraph at lines 1862--1862 \T1/ptm/m/it/10 List[[][]float[][]] Underfull \hbox (badness 10000) in paragraph at lines 1862--1862 \T1/ptm/m/it/10 = Overfull \hbox (4.85487pt too wide) in paragraph at lines 1862--1862 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (1.09485pt too wide) in paragraph at lines 1862--1862 \T1/ptm/m/it/10 tran- Underfull \hbox (badness 10000) in paragraph at lines 1862--1862 \T1/ptm/m/it/10 si- Overfull \hbox (4.02464pt too wide) in paragraph at lines 1862--1862 \T1/ptm/m/it/10 tions: Overfull \hbox (21.8143pt too wide) in paragraph at lines 1862--1862 \T1/ptm/m/it/10 List[[][]float[][]] Underfull \hbox (badness 10000) in paragraph at lines 1862--1862 \T1/ptm/m/it/10 = Overfull \hbox (4.85487pt too wide) in paragraph at lines 1862--1862 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (4.98474pt too wide) in paragraph at lines 1862--1862 \T1/ptm/m/it/10 trans- Underfull \hbox (badness 10000) in paragraph at lines 1862--1862 \T1/ptm/m/it/10 mis- Overfull \hbox (32.35434pt too wide) in paragraph at lines 1862--1862 \T1/ptm/m/it/10 sion_matrix: Overfull \hbox (21.8143pt too wide) in paragraph at lines 1862--1862 \T1/ptm/m/it/10 List[[][]float[][]] Underfull \hbox (badness 10000) in paragraph at lines 1862--1862 \T1/ptm/m/it/10 = Overfull \hbox (8.35487pt too wide) in paragraph at lines 1862--1862 \T1/ptm/m/it/10 None\T1/pcr/m/n/10 ) LaTeX Warning: Hyper reference `emod_api.demographics.Updateable:emod_api.demog raphics.Updateable.Updateable' on page 23 undefined on input line 1863. LaTeX Warning: Hyper reference `emod_api.demographics.PropertiesAndAttributes:e mod_api.demographics.PropertiesAndAttributes.IndividualProperty' on page 23 und efined on input line 1876. Overfull \hbox (76.12407pt too wide) in paragraph at lines 1876--1876 []\T1/ptm/m/it/10 individual_property: Overfull \hbox (269.15215pt too wide) in paragraph at lines 1876--1876 \T1/ptm/m/n/10 emod_api.demographics.PropertiesAndAttributes.IndividualProperty Underfull \hbox (badness 10000) in paragraph at lines 1876--1876 \T1/ptm/m/it/10 = Overfull \hbox (20.35487pt too wide) in paragraph at lines 1876--1876 \T1/ptm/m/it/10 None\T1/pcr/m/n/10 ) LaTeX Warning: Hyper reference `emod_api.demographics.Updateable:emod_api.demog raphics.Updateable.Updateable' on page 23 undefined on input line 1877. Overfull \hbox (109.22414pt too wide) in paragraph at lines 1907--1907 []\T1/ptm/m/it/10 age_distribution_flag=None\T1/ptm/m/n/10 , Overfull \hbox (94.32413pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 age_distribution1=None\T1/ptm/m/n/10 , Overfull \hbox (94.32413pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 age_distribution2=None\T1/ptm/m/n/10 , Overfull \hbox (89.32413pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 age_distribution=None\T1/ptm/m/n/10 , Overfull \hbox (18.82483pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 preva- Overfull \hbox (116.0839pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 lence_distribution_flag=None\T1/ptm/m/n/10 , Overfull \hbox (18.82483pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 preva- Overfull \hbox (101.18388pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 lence_distribution1=None\T1/ptm/m/n/10 , Overfull \hbox (18.82483pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 preva- Overfull \hbox (101.18388pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 lence_distribution2=None\T1/ptm/m/n/10 , Overfull \hbox (6.57483pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 im- Overfull \hbox (8.79494pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 mu- Overfull \hbox (109.9839pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 nity_distribution_flag=None\T1/ptm/m/n/10 , Overfull \hbox (6.57483pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 im- Overfull \hbox (8.79494pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 mu- Overfull \hbox (95.0839pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 nity_distribution1=None\T1/ptm/m/n/10 , Overfull \hbox (6.57483pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 im- Overfull \hbox (8.79494pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 mu- Overfull \hbox (95.0839pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 nity_distribution2=None\T1/ptm/m/n/10 , Overfull \hbox (109.9838pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 risk_distribution_flag=None\T1/ptm/m/n/10 , Overfull \hbox (95.08379pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 risk_distribution1=None\T1/ptm/m/n/10 , Overfull \hbox (95.08379pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 risk_distribution2=None\T1/ptm/m/n/10 , Overfull \hbox (6.57483pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 mi- Overfull \hbox (10.31496pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 gra- Overfull \hbox (169.32329pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 tion_heterogeneity_distribution_flag=None\T1/ptm/m/n/10 , Overfull \hbox (6.57483pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 mi- Overfull \hbox (10.31496pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 gra- Overfull \hbox (154.42328pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 tion_heterogeneity_distribution1=None\T1/ptm/m/n/10 , Overfull \hbox (6.57483pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 mi- Overfull \hbox (10.31496pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 gra- Overfull \hbox (154.42328pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 tion_heterogeneity_distribution2=None\T1/ptm/m/n/10 , Overfull \hbox (12.48488pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 mor- Overfull \hbox (7.13475pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 tal- Overfull \hbox (85.0839pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 ity_distribution=None\T1/ptm/m/n/10 , Overfull \hbox (9.35475pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 sus- Overfull \hbox (10.45485pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 cep- Overfull \hbox (2.13475pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 ti- Overfull \hbox (7.13475pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 bil- Overfull \hbox (88.5839pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 ity_distribution=None\T1/pcr/m/n/10 ) LaTeX Warning: Hyper reference `emod_api.demographics.Updateable:emod_api.demog raphics.Updateable.Updateable' on page 23 undefined on input line 1908. [23] Underfull \hbox (badness 10000) in paragraph at lines 1912--1912 []\T1/ptm/m/it/10 distribution_values: List[[][]float[][]] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- LaTeX Warning: Hyper reference `emod_api.demographics.Updateable:emod_api.demog raphics.Updateable.Updateable' on page 24 undefined on input line 1913. Underfull \hbox (badness 10000) in paragraph at lines 1926--1926 []\T1/ptm/m/it/10 distribution_values=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-s ult_scale_factor=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- LaTeX Warning: Hyper reference `emod_api.demographics.Updateable:emod_api.demog raphics.Updateable.Updateable' on page 24 undefined on input line 1927. Underfull \hbox (badness 10000) in paragraph at lines 1946--1946 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 axis_units=None\T1/ptm/m /n/10 , \T1/ptm/m/it/10 num_distribution_axes=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1946--1946 \T1/ptm/m/it/10 pop-u-la-tion_groups=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-su lt_scale_factor=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- LaTeX Warning: Hyper reference `emod_api.demographics.Updateable:emod_api.demog raphics.Updateable.Updateable' on page 24 undefined on input line 1947. [24] Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 []\T1/ptm/m/it/10 airport: Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 [][]\T1/ptm/m/it/10 int[][] = Overfull \hbox (4.8247pt too wide) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 tude=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Overfull \hbox (0.98447pt too wide) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 birth_rate: Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 [][]\T1/ptm/m/it/10 float[][] = Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 coun- Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 try=None\T1/ptm/m/n/10 , Overfull \hbox (9.42453pt too wide) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 growth_rate: Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 [][]\T1/ptm/m/it/10 float[][] = Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 lat-i-tude: Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 [][]\T1/ptm/m/it/10 float[][] = Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 lon-gi-tude: Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 [][]\T1/ptm/m/it/10 float[][] = Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 meta-data: Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 [][]\T1/ptm/m/it/10 dict[][] = Overfull \hbox (22.25432pt too wide) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 tial_population: Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 [][]\T1/ptm/m/it/10 int[][] = Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 sea-port: Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 [][]\T1/ptm/m/it/10 int[][] = Overfull \hbox (50.58374pt too wide) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 val_habitat_multiplier: Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 List[[][]float[][]] Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 ini- Overfull \hbox (86.9334pt too wide) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 tial_vectors_per_species=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 in-fec-tiv- Overfull \hbox (15.02396pt too wide) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 ity_multiplier: Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 [][]\T1/ptm/m/it/10 float[][] = Overfull \hbox (15.23419pt too wide) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 tra_attributes: Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 [][]\T1/ptm/m/it/10 dict[][] = LaTeX Warning: Hyper reference `emod_api.demographics.Updateable:emod_api.demog raphics.Updateable.Updateable' on page 25 undefined on input line 1982. [25] [26] Underfull \hbox (badness 10000) in paragraph at lines 2052--2053 []\T1/pcr/b/n/10 distribution \T1/ptm/m/n/10 ^^U The se-lected dis-tri-bu-tion (need to come from Underfull \hbox (badness 10000) in paragraph at lines 2072--2072 []\T1/ptm/m/it/10 filename\T1/ptm/m/n/10 , \T1/ptm/m/it/10 dis-tri-bu-tion\T1/p tm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2073--2074 \T1/ptm/m/n/10 Set the \T1/pcr/m/n/10 ImmunityDistributionFlag\T1/ptm/m/n/10 , \T1/pcr/m/n/10 ImmunityDistribution1 \T1/ptm/m/n/10 and Underfull \hbox (badness 10000) in paragraph at lines 2100--2100 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2100--2100 \T1/ptm/m/it/10 fn\T1/ptm/m/n/10 , [27] Underfull \hbox (badness 10000) in paragraph at lines 2170--2170 []\T1/ptm/m/it/10 cb\T1/ptm/m/n/10 , Overfull \hbox (28.70406pt too wide) in paragraph at lines 2170--2170 \T1/ptm/m/it/10 use_existing=False\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 2196--2196 []\T1/ptm/m/it/10 cb\T1/ptm/m/n/10 , Overfull \hbox (34.70406pt too wide) in paragraph at lines 2196--2196 \T1/ptm/m/it/10 use_existing=False\T1/pcr/m/n/10 ) LaTeX Warning: Hyper reference `emod_api.demographics.demographics_utils:emod_a pi.demographics.demographics_utils.set_static_demographics' on page 28 undefine d on input line 2197. [28] Underfull \hbox (badness 10000) in paragraph at lines 2268--2268 []\T1/ptm/m/it/10 point\T1/ptm/m/n/10 , Overfull \hbox (37.41425pt too wide) in paragraph at lines 2268--2268 \T1/ptm/m/it/10 grid_id_2_cell_id\T1/ptm/m/n/10 , LaTeX Warning: Hyper reference `emod_api.schema_to_class:emod_api.schema_to_cla ss.ReadOnlyDict' on page 29 undefined on input line 2300. Underfull \hbox (badness 10000) in paragraph at lines 2309--2309 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Event_Trigger\T1/ptm/m/n /10 , Overfull \hbox (73.22345pt too wide) in paragraph at lines 2309--2309 \T1/ptm/m/it/10 Node_Selection_Type=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 DISTANCE_ ONLY\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (57.50374pt too wide) in paragraph at lines 2309--2309 \T1/ptm/m/it/10 Max_Distance_To_Other_Nodes_Km=- [29] LaTeX Warning: Hyper reference `emod_api.schema_to_class:emod_api.schema_to_cla ss.ReadOnlyDict' on page 30 undefined on input line 2335. Underfull \hbox (badness 10000) in paragraph at lines 2344--2344 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 In-ter-ven- LaTeX Warning: Hyper reference `emod_api.schema_to_class:emod_api.schema_to_cla ss.ReadOnlyDict' on page 30 undefined on input line 2364. Underfull \hbox (badness 10000) in paragraph at lines 2387--2388 []\T1/pcr/b/n/10 but without the distribution, which is inferred. E.g., LaTeX Warning: Hyper reference `emod_api.schema_to_class:emod_api.schema_to_cla ss.ReadOnlyDict' on page 30 undefined on input line 2399. Underfull \hbox (badness 10000) in paragraph at lines 2408--2408 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Event_Or_Config=\TS1/ptm /m/it/10 '\T1/ptm/m/it/10 Event\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/ 10 Con-fig=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2408--2408 \T1/ptm/m/it/10 Event=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 NoTrigger\TS1/ptm/m/it/ 10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Ten-dency=1.0\T1/ptm/m/n/10 , \T1/ptm/m/it /10 Sin-gle_Use=True\T1/ptm/m/n/10 , [30] LaTeX Warning: Hyper reference `emod_api.schema_to_class:emod_api.schema_to_cla ss.ReadOnlyDict' on page 31 undefined on input line 2443. Underfull \hbox (badness 10000) in paragraph at lines 2452--2452 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Trig-gers\T1/ptm/m/n/10 , \T1/ptm/m/it/10 In-ter-ven-tions\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Prop- Underfull \hbox (badness 10000) in paragraph at lines 2452--2452 \T1/ptm/m/it/10 erty_Restrictions=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 De-mo- Underfull \hbox (badness 10000) in paragraph at lines 2452--2452 \T1/ptm/m/it/10 graphic_Coverage=1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar-get_Ag e_Min=0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar- Underfull \hbox (badness 10000) in paragraph at lines 2452--2452 \T1/ptm/m/it/10 get_Age_Max=45625\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar-get_Gende r=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 All\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/p tm/m/it/10 Tar- Underfull \hbox (badness 10000) in paragraph at lines 2452--2452 \T1/ptm/m/it/10 get_Residents_Only=False\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Durati on=- 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Black- Underfull \hbox (badness 10000) in paragraph at lines 2452--2452 \T1/ptm/m/it/10 out_Event_Trigger=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Black-ou t_Period=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2452--2452 \T1/ptm/m/it/10 Black-out_On_First_Occurrence=None\T1/ptm/m/n/10 , \T1/ptm/m/it /10 Dis-qual-i-fy- LaTeX Warning: Hyper reference `emod_api.schema_to_class:emod_api.schema_to_cla ss.ReadOnlyDict' on page 31 undefined on input line 2505. Underfull \hbox (badness 10000) in paragraph at lines 2514--2514 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar-get_Property_Key\T1/ ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2514--2514 \T1/ptm/m/it/10 Tar-get_Property_Value\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2514--2514 \T1/ptm/m/it/10 Daily_Probability=1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Max- Underfull \hbox (badness 10000) in paragraph at lines 2514--2514 \T1/ptm/m/it/10 i-mum_Duration=1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Revert=- Underfull \hbox (badness 10000) in paragraph at lines 2514--2514 \T1/ptm/m/it/10 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 In-ter-ven-tion_Name=\TS1/ptm /m/it/10 ''\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2514--2514 \T1/ptm/m/it/10 Event_Trigger_Distributed=\TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , [31] Underfull \hbox (badness 10000) in paragraph at lines 2522--2523 []\T1/pcr/b/n/10 The key part of the new key-value pair of the IP. Underfull \hbox (badness 10000) in paragraph at lines 2525--2526 []\T1/pcr/b/n/10 The value part of the new key-value pair of the IP. Underfull \hbox (badness 10000) in paragraph at lines 2531--2532 []\T1/pcr/b/n/10 The daily probability that an individual will move to the Underfull \hbox (badness 10000) in paragraph at lines 2534--2535 []\T1/pcr/b/n/10 The maximum amount of time individuals have to move Underfull \hbox (badness 10000) in paragraph at lines 2534--2535 \T1/pcr/b/n/10 to a new group. This timing works in conjunction with Underfull \hbox (badness 10000) in paragraph at lines 2537--2538 []\T1/pcr/b/n/10 The number of days before an individual moves back to their Underfull \hbox (badness 10000) in paragraph at lines 2540--2541 []\T1/pcr/b/n/10 Optional Intervention_Name. Useful if managing a replacement Underfull \hbox (badness 10000) in paragraph at lines 2543--2544 []\T1/pcr/b/n/10 Optional broadcast trigger to be published when PVC is Underfull \hbox (badness 10000) in paragraph at lines 2546--2547 []\T1/pcr/b/n/10 Optional broadcast trigger to be published when PVC is LaTeX Warning: Hyper reference `emod_api.schema_to_class:emod_api.schema_to_cla ss.ReadOnlyDict' on page 32 undefined on input line 2555. Underfull \hbox (badness 10000) in paragraph at lines 2564--2564 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Start_Day: [][]int[][]\T 1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2564--2564 \T1/ptm/m/it/10 Node_Ids=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Node- Underfull \hbox (badness 10000) in paragraph at lines 2564--2564 \T1/ptm/m/it/10 set_Config=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Num- Underfull \hbox (badness 10000) in paragraph at lines 2564--2564 \T1/ptm/m/it/10 ber_Repetitions: [][]int[][] = 1\T1/ptm/m/n/10 , Overfull \hbox (4.90335pt too wide) in paragraph at lines 2564--2564 \T1/ptm/m/it/10 Timesteps_Between_Repetitions: Underfull \hbox (badness 10000) in paragraph at lines 2564--2564 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Sched-uled_Campaign_Event\TS1/ptm/m/it/10 '\T 1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2564--2564 \T1/ptm/m/it/10 Prop-erty_Restrictions=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2564--2564 \T1/ptm/m/it/10 = 1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar-get_Age_Min=0\T1/ptm/ m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2564--2564 \T1/ptm/m/it/10 Tar-get_Age_Max=45625\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2564--2564 \T1/ptm/m/it/10 Tar-get_Residents_Only: Underfull \hbox (badness 10000) in paragraph at lines 2564--2564 [][]\T1/ptm/m/it/10 bool[][] = False\T1/ptm/m/n/10 , \T1/ptm/m/it/10 In-ter-ven - [32] LaTeX Warning: Hyper reference `emod_api.schema_to_class:emod_api.schema_to_cla ss.ReadOnlyDict' on page 33 undefined on input line 2622. Underfull \hbox (badness 10000) in paragraph at lines 2631--2631 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Start_Day: [][]int[][]\T 1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2631--2631 \T1/ptm/m/it/10 List[[][]str[][]]\T1/ptm/m/n/10 , \T1/ptm/m/it/10 In-ter-ven-ti on_List: Underfull \hbox (badness 10000) in paragraph at lines 2631--2631 \T1/ptm/m/it/10 List[[][]dict[][]]\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Node_Ids=Non e\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2631--2631 \T1/ptm/m/it/10 Node-set_Config=None\T1/ptm/m/n/10 , Overfull \hbox (17.59343pt too wide) in paragraph at lines 2631--2631 \T1/ptm/m/it/10 Node_Property_Restrictions=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2631--2631 \T1/ptm/m/it/10 Prop-erty_Restrictions=None\T1/ptm/m/n/10 , Overfull \hbox (4.90335pt too wide) in paragraph at lines 2631--2631 \T1/ptm/m/it/10 Timesteps_Between_Repetitions: Underfull \hbox (badness 10000) in paragraph at lines 2631--2631 [][]\T1/ptm/m/it/10 int[][] = - 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 De-mo- Underfull \hbox (badness 10000) in paragraph at lines 2631--2631 \T1/ptm/m/it/10 graphic_Coverage: [][]float[][] Underfull \hbox (badness 10000) in paragraph at lines 2631--2631 \T1/ptm/m/it/10 = 1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar-get_Age_Min=0\T1/ptm/ m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2631--2631 \T1/ptm/m/it/10 Tar-get_Age_Max=45625\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2631--2631 \T1/ptm/m/it/10 get_Residents_Only=False\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2631--2631 \T1/ptm/m/it/10 Duration=- 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Black- Underfull \hbox (badness 10000) in paragraph at lines 2631--2631 \T1/ptm/m/it/10 Black-out_Period=0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Black- Underfull \hbox (badness 10000) in paragraph at lines 2631--2631 \T1/ptm/m/it/10 out_On_First_Occurrence=0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2631--2631 \T1/ptm/m/it/10 Dis-qual-i-fy- Underfull \hbox (badness 10000) in paragraph at lines 2631--2631 \T1/ptm/m/it/10 ing_Properties=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 De- [33] LaTeX Warning: Hyper reference `emod_api.schema_to_class:emod_api.schema_to_cla ss.ReadOnlyDict' on page 34 undefined on input line 2710. Underfull \hbox (badness 6078) in paragraph at lines 2719--2719 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Base_Sensitivity: [][]fl oat[][] = Underfull \hbox (badness 10000) in paragraph at lines 2719--2719 \T1/ptm/m/it/10 Event_Trigger_Distributed: [][]str[][] Underfull \hbox (badness 10000) in paragraph at lines 2719--2719 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Event_Trigger_Expired: Underfull \hbox (badness 10000) in paragraph at lines 2719--2719 [][]\T1/ptm/m/it/10 str[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Pos-i- Underfull \hbox (badness 10000) in paragraph at lines 2719--2719 \T1/ptm/m/it/10 tive_Diagnosis_Intervention=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2719--2719 \T1/ptm/m/it/10 Pos-i-tive_Diagnosis_Event: Underfull \hbox (badness 10000) in paragraph at lines 2719--2719 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Pos-i-tiveRe-su lt\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Neg-a- Underfull \hbox (badness 10000) in paragraph at lines 2719--2719 \T1/ptm/m/it/10 tive_Diagnosis_Intervention=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2719--2719 \T1/ptm/m/it/10 Neg-a-tive_Diagnosis_Event: Underfull \hbox (badness 10000) in paragraph at lines 2719--2719 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Neg-a-tiveRe-su lt\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Treat- [34] LaTeX Warning: Hyper reference `emod_api.schema_to_class:emod_api.schema_to_cla ss.ReadOnlyDict' on page 35 undefined on input line 2764. Underfull \hbox (badness 10000) in paragraph at lines 2773--2773 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2773--2773 \T1/ptm/m/it/10 trig-ger\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-lay\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2773--2773 \T1/ptm/m/it/10 in-ter-ven-tion\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2773--2773 \T1/ptm/m/it/10 ip_targeting=[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2787--2788 []\T1/pcr/b/n/10 without the distribution, which is inferred. E.g., { Overfull \hbox (29.40492pt too wide) in paragraph at lines 2810--2810 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Overfull \hbox (45.52452pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 start_day\T1/ptm/m/n/10 , Overfull \hbox (23.02464pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 trig- Overfull \hbox (24.76476pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 gers\T1/ptm/m/n/10 , Overfull \hbox (16.35486pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 in- Overfull \hbox (19.48474pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 ter- Overfull \hbox (22.45485pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 ven- Overfull \hbox (23.3048pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 tion\T1/ptm/m/n/10 , Overfull \hbox (18.01491pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 de- Overfull \hbox (47.8247pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 lay=None\T1/ptm/m/n/10 , Overfull \hbox (49.62474pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 duration=- Overfull \hbox (5.24501pt too wide) in paragraph at lines 2810--2810 Overfull \hbox (12.74501pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 1\T1/ptm/m/n/10 , Overfull \hbox (84.58427pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 ip_targeting=None\T1/ptm/m/n/10 , Overfull \hbox (22.35486pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 cov- Overfull \hbox (16.70485pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 er- Overfull \hbox (41.23497pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 age=1.0\T1/ptm/m/n/10 , Overfull \hbox (20.0448pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 tar- Overfull \hbox (70.85468pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 get_age_min=0\T1/ptm/m/n/10 , Overfull \hbox (20.0448pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 tar- Overfull \hbox (92.51472pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 get_age_max=45625\T1/ptm/m/n/10 , Overfull \hbox (20.0448pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 tar- Overfull \hbox (60.13423pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 get_sex=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 All\TS1/ptm/m/it/10 ' \T1/ptm/m/n/10 , Overfull \hbox (20.0448pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 tar- Overfull \hbox (111.04373pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 get_residents_only=False\T1/ptm/m/n/10 , Overfull \hbox (30.03479pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 black- Overfull \hbox (45.61475pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 out=True\T1/ptm/m/n/10 , Overfull \hbox (107.23405pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 check_at_trigger=False\T1/pcr/m/n/10 ) [35] Underfull \hbox (badness 10000) in paragraph at lines 2830--2831 []\T1/pcr/b/n/10 without the distribution, which is inferred. E.g., { [36] Underfull \hbox (badness 10000) in paragraph at lines 2878--2878 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2878--2878 \T1/ptm/m/it/10 new_ip_key\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2878--2878 \T1/ptm/m/it/10 new_ip_value\T1/ptm/m/n/10 , Overfull \hbox (25.72469pt too wide) in paragraph at lines 2878--2878 \T1/ptm/m/it/10 change_age_in_days\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2878--2878 \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 2878--2878 \T1/ptm/m/it/10 vert_in_days\T1/ptm/m/n/10 , Overfull \hbox (8.6443pt too wide) in paragraph at lines 2878--2878 \T1/ptm/m/it/10 ip_targeting_key\T1/ptm/m/n/10 , Overfull \hbox (17.38419pt too wide) in paragraph at lines 2878--2878 \T1/ptm/m/it/10 ip_targeting_value\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2878--2878 \T1/ptm/m/it/10 cov-er- Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 trig- Overfull \hbox (7.23471pt too wide) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 new_ip_key: Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 [][]\T1/ptm/m/it/10 str[][]\T1/ptm/m/n/10 , Overfull \hbox (15.9746pt too wide) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 new_ip_value: Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 [][]\T1/ptm/m/it/10 str[][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 start_day: Underfull \hbox (badness 8019) in paragraph at lines 2919--2919 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , Overfull \hbox (4.01462pt too wide) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 daily_prob: Overfull \hbox (16.53465pt too wide) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 max_duration: Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 [][]\T1/ptm/m/it/10 int[][] = Overfull \hbox (8.43495pt too wide) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 9.3228e+35\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 re- Overfull \hbox (12.23436pt too wide) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 vert_in_days: Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 node_ids: Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (18.54387pt too wide) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 ip_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 cov-er-age: Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 [][]\T1/ptm/m/it/10 float[][] = Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar- Overfull \hbox (11.93463pt too wide) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 get_age_min: Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 [][]\T1/ptm/m/it/10 float[][] = Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar- Overfull \hbox (13.59468pt too wide) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 get_age_max: Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 [][]\T1/ptm/m/it/10 float[][] = Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 45625\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 tar- Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 get_sex: Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 [][]\T1/ptm/m/it/10 str[][] = Underfull \hbox (badness 5203) in paragraph at lines 2919--2919 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 All\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm /m/it/10 tar- Overfull \hbox (35.65398pt too wide) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 get_residents_only: Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 [][]\T1/ptm/m/it/10 bool[][] = Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 lay=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 lis-ten- Overfull \hbox (12.65463pt too wide) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 ing_duration: Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 black- Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 = True\T1/ptm/m/n/10 , Overfull \hbox (28.3443pt too wide) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 check_at_trigger: Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 [][]\T1/ptm/m/it/10 bool[][] = [37] [38] Underfull \hbox (badness 10000) in paragraph at lines 3008--3008 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Overfull \hbox (6.40475pt too wide) in paragraph at lines 3008--3008 \T1/ptm/m/it/10 new_ip_key\T1/ptm/m/n/10 , Overfull \hbox (15.14464pt too wide) in paragraph at lines 3008--3008 \T1/ptm/m/it/10 new_ip_value\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3008--3008 \T1/ptm/m/it/10 start_day: Underfull \hbox (badness 10000) in paragraph at lines 3008--3008 [][]\T1/ptm/m/it/10 int[][] = Underfull \hbox (badness 10000) in paragraph at lines 3008--3008 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 num- Overfull \hbox (21.31403pt too wide) in paragraph at lines 3008--3008 \T1/ptm/m/it/10 ber_repetitions: Underfull \hbox (badness 8019) in paragraph at lines 3008--3008 [][]\T1/ptm/m/it/10 int[][] = 1\T1/ptm/m/n/10 , Overfull \hbox (57.41364pt too wide) in paragraph at lines 3008--3008 \T1/ptm/m/it/10 timesteps_between_reps: Underfull \hbox (badness 10000) in paragraph at lines 3008--3008 \T1/ptm/m/it/10 node_ids: Underfull \hbox (badness 10000) in paragraph at lines 3008--3008 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 3008--3008 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (4.01462pt too wide) in paragraph at lines 3008--3008 \T1/ptm/m/it/10 daily_prob: Overfull \hbox (16.53465pt too wide) in paragraph at lines 3008--3008 \T1/ptm/m/it/10 max_duration: Underfull \hbox (badness 10000) in paragraph at lines 3008--3008 [][]\T1/ptm/m/it/10 int[][] = Overfull \hbox (8.43495pt too wide) in paragraph at lines 3008--3008 \T1/ptm/m/it/10 9.3228e+35\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3008--3008 \T1/ptm/m/it/10 re- Overfull \hbox (12.23436pt too wide) in paragraph at lines 3008--3008 \T1/ptm/m/it/10 vert_in_days: Overfull \hbox (18.54387pt too wide) in paragraph at lines 3008--3008 \T1/ptm/m/it/10 ip_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 3008--3008 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 3008--3008 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3008--3008 \T1/ptm/m/it/10 cov-er-age: Underfull \hbox (badness 10000) in paragraph at lines 3008--3008 [][]\T1/ptm/m/it/10 float[][] = Underfull \hbox (badness 10000) in paragraph at lines 3008--3008 \T1/ptm/m/it/10 1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar- Overfull \hbox (11.93463pt too wide) in paragraph at lines 3008--3008 \T1/ptm/m/it/10 get_age_min: Underfull \hbox (badness 10000) in paragraph at lines 3008--3008 [][]\T1/ptm/m/it/10 float[][] = Underfull \hbox (badness 10000) in paragraph at lines 3008--3008 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar- Overfull \hbox (13.59468pt too wide) in paragraph at lines 3008--3008 \T1/ptm/m/it/10 get_age_max: Underfull \hbox (badness 10000) in paragraph at lines 3008--3008 [][]\T1/ptm/m/it/10 float[][] = Underfull \hbox (badness 10000) in paragraph at lines 3008--3008 \T1/ptm/m/it/10 45625\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3008--3008 \T1/ptm/m/it/10 tar- Underfull \hbox (badness 10000) in paragraph at lines 3008--3008 \T1/ptm/m/it/10 get_sex: Underfull \hbox (badness 10000) in paragraph at lines 3008--3008 [][]\T1/ptm/m/it/10 str[][] = Underfull \hbox (badness 5203) in paragraph at lines 3008--3008 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 All\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm /m/it/10 tar- Overfull \hbox (35.65398pt too wide) in paragraph at lines 3008--3008 \T1/ptm/m/it/10 get_residents_only: Underfull \hbox (badness 10000) in paragraph at lines 3008--3008 [][]\T1/ptm/m/it/10 bool[][] = [39] [40] Underfull \hbox (badness 10000) in paragraph at lines 3077--3077 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar- Underfull \hbox (badness 10000) in paragraph at lines 3077--3077 \T1/ptm/m/it/10 tar-get_property_value: Underfull \hbox (badness 10000) in paragraph at lines 3077--3077 [][]\T1/ptm/m/it/10 str[][]\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day: Underfull \hbox (badness 10000) in paragraph at lines 3077--3077 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 num- Underfull \hbox (badness 10000) in paragraph at lines 3077--3077 \T1/ptm/m/it/10 timesteps_between_reps: Underfull \hbox (badness 5878) in paragraph at lines 3077--3077 \T1/ptm/m/it/10 = 9.3228e+35\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-vert: Underfull \hbox (badness 10000) in paragraph at lines 3077--3077 \T1/ptm/m/it/10 = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ip_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 3077--3077 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar- Underfull \hbox (badness 6316) in paragraph at lines 3077--3077 \T1/ptm/m/it/10 get_age_min: [][]float[][] = Underfull \hbox (badness 10000) in paragraph at lines 3077--3077 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar-get_age_max: Underfull \hbox (badness 10000) in paragraph at lines 3077--3077 [][]\T1/ptm/m/it/10 float[][] = 45625\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar- Underfull \hbox (badness 8000) in paragraph at lines 3077--3077 \T1/ptm/m/it/10 get_sex: [][]str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 All\TS 1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3077--3077 \T1/ptm/m/it/10 tar-get_residents_only: Underfull \hbox (badness 10000) in paragraph at lines 3077--3077 [][]\T1/ptm/m/it/10 bool[][] = False\T1/ptm/m/n/10 , \T1/ptm/m/it/10 trig- Underfull \hbox (badness 10000) in paragraph at lines 3077--3077 \T1/ptm/m/it/10 ger_condition_list: Underfull \hbox (badness 10000) in paragraph at lines 3077--3077 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 trig- Underfull \hbox (badness 10000) in paragraph at lines 3077--3077 \T1/ptm/m/it/10 gered_campaign_delay: Underfull \hbox (badness 10000) in paragraph at lines 3077--3077 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lis-ten- Underfull \hbox (badness 10000) in paragraph at lines 3077--3077 \T1/ptm/m/it/10 ing_duration: [][]int[][] Underfull \hbox (badness 10000) in paragraph at lines 3077--3077 \T1/ptm/m/it/10 = - 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 black- Overfull \hbox (11.68343pt too wide) in paragraph at lines 3077--3077 \T1/ptm/m/it/10 check_eligibility_at_trigger: [41] [42] Underfull \hbox (badness 10000) in paragraph at lines 3196--3196 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 nodeto\T1/ptm/m/n/10 , \ T1/ptm/m/it/10 start_day: Underfull \hbox (badness 8056) in paragraph at lines 3196--3196 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age: [][ ]float[][] Underfull \hbox (badness 7851) in paragraph at lines 3196--3196 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar-get_age: [][]dict[][ ] Underfull \hbox (badness 10000) in paragraph at lines 3196--3196 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 nodes_from_ids: Underfull \hbox (badness 10000) in paragraph at lines 3196--3196 \T1/ptm/m/it/10 List[[][]int[][]] = None\T1/ptm/m/n/10 , Overfull \hbox (5.56337pt too wide) in paragraph at lines 3196--3196 \T1/ptm/m/it/10 ind_property_restrictions=None\T1/ptm/m/n/10 , Overfull \hbox (12.22342pt too wide) in paragraph at lines 3196--3196 \T1/ptm/m/it/10 node_property_restrictions=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3196--3196 \T1/ptm/m/it/10 trig-gered_campaign_delay=0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3196--3196 \T1/ptm/m/it/10 trig-ger_condition_list=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3225--3229 []\T1/ptm/m/n/10 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Latexmk: Log file says output to 'institute-for-disease-modeling-emod-api.pdf' Latexmk: Log file says output to 'institute-for-disease-modeling-emod-api.pdf' Latexmk: List of undefined refs and citations: Reference `emod_api.campaign:module-emod_api.campaign' on page 63 undefined on input line 5065 Reference `emod_api.channelreports.channels:module-emod_api.channelreports.channels' on page 63 undefined on input line 5067 Reference `emod_api.channelreports:module-emod_api.channelreports' on page 63 undefined on input line 5066 Reference `emod_api.config.default_from_schema:module-emod_api.config.default_from_schema' on page 63 undefined on input line 5069 Reference `emod_api.config.default_from_schema_no_validation:module-emod_api.config.default_from_schema_no_validation' on page 63 undefined on input line 5070 Reference `emod_api.config.dtk_post_process_adhocevents:module-emod_api.config.dtk_post_process_adhocevents' on page 63 undefined on input line 5071 Reference 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`emod_api.demographics.Demographics:module-emod_api.demographics.Demographics' on page 63 undefined on input line 5080 Reference `emod_api.demographics.DemographicsGenerator:module-emod_api.demographics.DemographicsGenerator' on page 63 undefined on input line 5082 Reference `emod_api.demographics.DemographicsInputDataParsers:module-emod_api.demographics.DemographicsInputDataParsers' on page 63 undefined on input line 5083 Reference `emod_api.demographics.DemographicsTemplates:module-emod_api.demographics.DemographicsTemplates' on page 63 undefined on input line 5084 Reference `emod_api.demographics.Node:module-emod_api.demographics.Node' on page 63 undefined on input line 5086 Reference `emod_api.demographics.PreDefinedDistributions:module-emod_api.demographics.PreDefinedDistributions' on page 63 undefined on input line 5087 Reference `emod_api.demographics.PropertiesAndAttributes:module-emod_api.demographics.PropertiesAndAttributes' on page 63 undefined on input line 5088 Reference `emod_api.demographics.Updateable:module-emod_api.demographics.Updateable' on page 63 undefined on input line 5089 Reference `emod_api.demographics.demographics_utils:module-emod_api.demographics.demographics_utils' on page 63 undefined on input line 5081 Reference `emod_api.demographics.grid_construction:module-emod_api.demographics.grid_construction' on page 63 undefined on input line 5085 Reference `emod_api.demographics:module-emod_api.demographics' on page 63 undefined on input line 5078 Reference `emod_api.interventions.common:module-emod_api.interventions.common' on page 63 undefined on input line 5091 Reference `emod_api.interventions.import_pressure:module-emod_api.interventions.import_pressure' on page 63 undefined on input line 5092 Reference `emod_api.interventions.migration:module-emod_api.interventions.migration' on page 63 undefined on input line 5093 Reference `emod_api.interventions.node_multiplier:module-emod_api.interventions.node_multiplier' on page 63 undefined on 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etc: Non-existent destination files: 'institute-for-disease-modeling-emod-api.ind' ------------ Run number 1 of rule 'makeindex institute-for-disease-modeling-emod-api.idx' ------------ Latexmk: applying rule 'makeindex institute-for-disease-modeling-emod-api.idx'... ------------ Running 'makeindex -s python.ist -o "institute-for-disease-modeling-emod-api.ind" "institute-for-disease-modeling-emod-api.idx"' ------------ This is makeindex, version 2.15 [TeX Live 2017] (kpathsea + Thai support). Scanning style file ./python.ist.......done (7 attributes redefined, 0 ignored). Scanning input file institute-for-disease-modeling-emod-api.idx....done (483 entries accepted, 0 rejected). Sorting entries.......done (4731 comparisons). Generating output file institute-for-disease-modeling-emod-api.ind....done (922 lines written, 0 warnings). Output written in institute-for-disease-modeling-emod-api.ind. Transcript written in institute-for-disease-modeling-emod-api.ilg. Rule 'pdflatex': File changes, etc: Changed files, or newly in use since previous run(s): 'institute-for-disease-modeling-emod-api.aux' 'institute-for-disease-modeling-emod-api.ind' ------------ Run number 2 of rule 'pdflatex' ------------ ------------ Running 'pdflatex -interaction=nonstopmode -recorder --jobname="institute-for-disease-modeling-emod-api" "emod-api-docs.tex"' ------------ Latexmk: applying rule 'pdflatex'... 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\hbox (142.8247pt too wide) in paragraph at lines 531--531 []\T1/ptm/m/it/10 config_path=None\T1/ptm/m/n/10 , Overfull \hbox (119.49449pt too wide) in paragraph at lines 531--531 \T1/ptm/m/it/10 set_fn=None\T1/ptm/m/n/10 , Overfull \hbox (83.01491pt too wide) in paragraph at lines 531--531 \T1/ptm/m/it/10 con- Overfull \hbox (109.10487pt too wide) in paragraph at lines 531--531 \T1/ptm/m/it/10 fig=None\T1/pcr/m/n/10 ) Overfull \hbox (126.96484pt too wide) in paragraph at lines 560--560 []\T1/ptm/m/it/10 config_path\T1/ptm/m/n/10 , Overfull \hbox (103.63463pt too wide) in paragraph at lines 560--560 \T1/ptm/m/it/10 set_fn\T1/ptm/m/n/10 , Overfull \hbox (95.01491pt too wide) in paragraph at lines 560--560 \T1/ptm/m/it/10 con- Overfull \hbox (133.8048pt too wide) in paragraph at lines 560--560 \T1/ptm/m/it/10 fig_out_path\T1/pcr/m/n/10 ) [9] Overfull \hbox (7.52466pt too wide) in paragraph at lines 598--598 \T1/ptm/m/it/10 hoc_events\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 628--628 []\T1/ptm/m/it/10 configjson_path\T1/ptm/m/n/10 , Overfull \hbox (63.52425pt too wide) in paragraph at lines 657--657 []\T1/ptm/m/it/10 start_config_dict\T1/ptm/m/n/10 , Overfull \hbox (71.87448pt too wide) in paragraph at lines 657--657 \T1/ptm/m/it/10 poi_set_param_fn\T1/pcr/m/n/10 ) Overfull \hbox (66.30441pt too wide) in paragraph at lines 666--666 []\T1/ptm/m/it/10 start_config_path\T1/ptm/m/n/10 , Overfull \hbox (71.87448pt too wide) in paragraph at lines 666--666 \T1/ptm/m/it/10 poi_set_param_fn\T1/pcr/m/n/10 ) Overfull \hbox (18.36475pt too wide) in paragraph at lines 675--675 []\T1/ptm/m/it/10 schema_path\T1/ptm/m/n/10 , Overfull \hbox (41.87448pt too wide) in paragraph at lines 675--675 \T1/ptm/m/it/10 poi_set_param_fn\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 684--684 []\T1/ptm/m/it/10 eradication_path\T1/ptm/m/n/10 , [10] Underfull \hbox (badness 10000) in paragraph at lines 732--734 []\T1/ptm/m/n/10 builder = s2c.SchemaConfigBuilder( Underfull \hbox (badness 10000) in paragraph at lines 741--741 []\T1/ptm/m/it/10 schema_name=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 schema.json\TS1 /ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 741--741 \T1/ptm/m/it/10 model=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 GENERIC_SIM\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 741--741 \T1/ptm/m/it/10 con-fig_out=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 config.json\TS1/p tm/m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (28.28418pt too wide) in paragraph at lines 752--752 []\T1/ptm/m/it/10 schema_name=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 schema.json\TS1 /ptm/m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (11.09424pt too wide) in paragraph at lines 752--752 \T1/ptm/m/it/10 model=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 GENERIC_SIM\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 752--752 \T1/ptm/m/it/10 con- Underfull \hbox (badness 10000) in paragraph at lines 752--752 \T1/ptm/m/it/10 fig_out=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 config.json\TS1/ptm/m /it/10 '\T1/ptm/m/n/10 , [11] Underfull \hbox (badness 10000) in paragraph at lines 795--795 \T1/ptm/m/it/10 name=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Erewhon\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 819--819 []\T1/ptm/m/it/10 tot_pop\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 819--819 \T1/ptm/m/it/10 num_nodes\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 828--828 []\T1/ptm/m/it/10 tot_pop=1000000\T1/ptm/m/n/10 , \T1/ptm/m/it/10 num_nodes=100 \T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 837--837 []\T1/ptm/m/it/10 input_file\T1/ptm/m/n/10 , \T1/ptm/m/it/10 res=0.008333333333 333333\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 845--845 []\T1/ptm/m/it/10 pop_filename_in\T1/ptm/m/n/10 , Overfull \hbox (28.44351pt too wide) in paragraph at lines 845--845 \T1/ptm/m/it/10 pop_filename_out=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 spatial_grid ded_pop_dir\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 851--851 []\T1/ptm/m/it/10 nodes\T1/ptm/m/n/10 , \T1/ptm/m/it/10 idref=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Gridded Underfull \hbox (badness 10000) in paragraph at lines 851--851 \T1/ptm/m/it/10 world grump2.5arcmin\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , [12] Overfull \hbox (149.53976pt too wide) in paragraph at lines 978--978 []\T1/ptm/m/it/10 distribution: [][]\T1/ptm/m/n/10 emod_api.demographics.Proper tiesAndAttributes.IndividualAttributes.MortalityDistribution[][] Overfull \hbox (94.92032pt too wide) in paragraph at lines 993--993 []\T1/ptm/m/it/10 distribution: [][]\T1/ptm/m/n/10 emod_api.demographics.Proper tiesAndAttributes.IndividualAttributes.AgeDistribution[][], [13] Underfull \hbox (badness 10000) in paragraph at lines 1064--1064 []\T1/ptm/m/it/10 CrudeBirthRate=0.04\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Crude-Mor - Underfull \hbox (badness 10000) in paragraph at lines 1153--1153 []\T1/ptm/m/it/10 file_male\T1/ptm/m/n/10 , \T1/ptm/m/it/10 file_female\T1/ptm/ m/n/10 , \T1/ptm/m/it/10 in-ter-val_fit=[1970, 1980]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1165--1165 []\T1/ptm/m/it/10 nodes=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1165--1165 \T1/ptm/m/it/10 meta_data: [][]dict[][] Overfull \hbox (7.52411pt too wide) in paragraph at lines 1165--1165 \T1/ptm/m/it/10 ual_attributes=None\T1/ptm/m/n/10 , Overfull \hbox (14.18416pt too wide) in paragraph at lines 1165--1165 \T1/ptm/m/it/10 node_attributes=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1165--1165 \T1/ptm/m/it/10 mor-tal- Overfull \hbox (16.5839pt too wide) in paragraph at lines 1165--1165 \T1/ptm/m/it/10 ity_distribution=None\T1/pcr/m/n/10 ) [14] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pcr.fd) Overfull \hbox (18.60422pt too wide) in paragraph at lines 1226--1226 []\T1/ptm/m/it/10 res_in_arcsec\T1/pcr/m/n/10 ) Overfull \hbox (13.07484pt too wide) in paragraph at lines 1245--1245 []\T1/ptm/m/it/10 nodes\T1/ptm/m/n/10 , Overfull \hbox (5.01491pt too wide) in paragraph at lines 1245--1245 \T1/ptm/m/it/10 con- Overfull \hbox (12.23463pt too wide) in paragraph at lines 1245--1245 \T1/ptm/m/it/10 cerns: Overfull \hbox (2.79494pt too wide) in paragraph at lines 1245--1245 \T1/ptm/m/it/10 Op- Overfull \hbox (457.54115pt too wide) in paragraph at lines 1245--1245 \T1/ptm/m/it/10 tional[Union[emod_api.dtk_tools.demographics.DemographicsGenera torConcern.DemographicsGeneratorConcern, Overfull \hbox (429.49101pt too wide) in paragraph at lines 1245--1245 \T1/ptm/m/it/10 List[emod_api.dtk_tools.demographics.DemographicsGeneratorConce rn.DemographicsGeneratorConcern]]] Underfull \hbox (badness 10000) in paragraph at lines 1245--1245 \T1/ptm/m/it/10 = Overfull \hbox (10.85487pt too wide) in paragraph at lines 1245--1245 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (84.4637pt too wide) in paragraph at lines 1245--1245 \T1/ptm/m/it/10 res_in_arcsec=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 custom\TS1/ptm/ m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (115.46402pt too wide) in paragraph at lines 1245--1245 \T1/ptm/m/it/10 node_id_from_lat_long=False\T1/pcr/m/n/10 ) [15] Underfull \hbox (badness 10000) in paragraph at lines 1330--1330 []\T1/ptm/m/it/10 df\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-mo-graph- Underfull \hbox (badness 10000) in paragraph at lines 1330--1330 \T1/ptm/m/it/10 ics_filename: Op- Underfull \hbox (badness 10000) in paragraph at lines 1330--1330 \T1/ptm/m/it/10 tional[[][]str[][]] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1330--1330 \T1/ptm/m/it/10 con-cerns: Op- Overfull \hbox (379.54115pt too wide) in paragraph at lines 1330--1330 \T1/ptm/m/it/10 tional[Union[emod_api.dtk_tools.demographics.DemographicsGenera torConcern.DemographicsGeneratorConcern, Overfull \hbox (351.49101pt too wide) in paragraph at lines 1330--1330 \T1/ptm/m/it/10 List[emod_api.dtk_tools.demographics.DemographicsGeneratorConce rn.DemographicsGeneratorConcern]]] Underfull \hbox (badness 10000) in paragraph at lines 1330--1330 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Overfull \hbox (6.4637pt too wide) in paragraph at lines 1330--1330 \T1/ptm/m/it/10 res_in_arcsec=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 custom\TS1/ptm/ m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (30.83415pt too wide) in paragraph at lines 1330--1330 \T1/ptm/m/it/10 node_id_from_lat_long=True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1330--1330 \T1/ptm/m/it/10 de-fault_population: Underfull \hbox (badness 10000) in paragraph at lines 1330--1330 [][]\T1/ptm/m/it/10 int[][] = 1000\T1/ptm/m/n/10 , Overfull \hbox (79.21327pt too wide) in paragraph at lines 1330--1330 \T1/ptm/m/it/10 load_other_columns_as_attributes=False\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1330--1330 \T1/ptm/m/it/10 tional[List[[][]str[][]]] Underfull \hbox (badness 10000) in paragraph at lines 1330--1330 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ex- Underfull \hbox (badness 10000) in paragraph at lines 1330--1330 \T1/ptm/m/it/10 clude_columns: Underfull \hbox (badness 10000) in paragraph at lines 1330--1330 \T1/ptm/m/it/10 Op-tional[List[[][]str[][]]] Underfull \hbox (badness 10000) in paragraph at lines 1330--1330 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Overfull \hbox (0.89452pt too wide) in paragraph at lines 1330--1330 \T1/ptm/m/it/10 nodeid_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1330--1330 \T1/ptm/m/it/10 Op-tional[[][]str[][]] Underfull \hbox (badness 10000) in paragraph at lines 1330--1330 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lat-i- Underfull \hbox (badness 10000) in paragraph at lines 1330--1330 \T1/ptm/m/it/10 tude_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1330--1330 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 lat\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lon-gi- Underfull \hbox (badness 10000) in paragraph at lines 1330--1330 \T1/ptm/m/it/10 tude_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1330--1330 \T1/ptm/m/it/10 tion_column_name: [16] Overfull \hbox (54.94496pt too wide) in paragraph at lines 1345--1346 []\T1/pcr/b/n/10 apply. If not specified, we use the DefaultWorldBankEquilibriu mConcern [17] Underfull \hbox (badness 10000) in paragraph at lines 1393--1393 []\T1/ptm/m/it/10 population_input_file: Underfull \hbox (badness 10000) in paragraph at lines 1393--1393 [][]\T1/ptm/m/it/10 str[][]\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-mo-graph- Underfull \hbox (badness 7851) in paragraph at lines 1393--1393 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 con-cerns: Op- Overfull \hbox (349.54115pt too wide) in paragraph at lines 1393--1393 \T1/ptm/m/it/10 tional[Union[emod_api.dtk_tools.demographics.DemographicsGenera torConcern.DemographicsGeneratorConcern, Overfull \hbox (321.49101pt too wide) in paragraph at lines 1393--1393 \T1/ptm/m/it/10 List[emod_api.dtk_tools.demographics.DemographicsGeneratorConce rn.DemographicsGeneratorConcern]]] Underfull \hbox (badness 10000) in paragraph at lines 1393--1393 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1393--1393 \T1/ptm/m/it/10 res_in_arcsec=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 custom\TS1/ptm/ m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (0.83415pt too wide) in paragraph at lines 1393--1393 \T1/ptm/m/it/10 node_id_from_lat_long=True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1393--1393 \T1/ptm/m/it/10 de-fault_population: Underfull \hbox (badness 10000) in paragraph at lines 1393--1393 [][]\T1/ptm/m/it/10 int[][] = 1000\T1/ptm/m/n/10 , Overfull \hbox (49.21327pt too wide) in paragraph at lines 1393--1393 \T1/ptm/m/it/10 load_other_columns_as_attributes=False\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1393--1393 \T1/ptm/m/it/10 in-clude_columns: Op- Underfull \hbox (badness 10000) in paragraph at lines 1393--1393 \T1/ptm/m/it/10 tional[List[[][]str[][]]] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1393--1393 \T1/ptm/m/it/10 ex-clude_columns: Op- Underfull \hbox (badness 10000) in paragraph at lines 1393--1393 \T1/ptm/m/it/10 tional[List[[][]str[][]]] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1393--1393 \T1/ptm/m/it/10 nodeid_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1393--1393 \T1/ptm/m/it/10 Op-tional[[][]str[][]] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1393--1393 \T1/ptm/m/it/10 lat-i-tude_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1393--1393 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 lat\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lon-gi- Underfull \hbox (badness 10000) in paragraph at lines 1393--1393 \T1/ptm/m/it/10 tude_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1393--1393 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 lon\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pop-u-la- Underfull \hbox (badness 6236) in paragraph at lines 1393--1393 \T1/ptm/m/it/10 tion_column_name: [][]str[][] = Overfull \hbox (54.94496pt too wide) in paragraph at lines 1408--1409 []\T1/pcr/b/n/10 apply. If not specified, we use the DefaultWorldBankEquilibriu mConcern [18] Overfull \hbox (6.3048pt too wide) in paragraph at lines 1464--1464 []\T1/ptm/m/it/10 lat\T1/ptm/m/n/10 , Overfull \hbox (13.5249pt too wide) in paragraph at lines 1464--1464 \T1/ptm/m/it/10 long\T1/ptm/m/n/10 , Overfull \hbox (115.34473pt too wide) in paragraph at lines 1464--1464 \T1/ptm/m/it/10 res=0.008333333333333333\T1/pcr/m/n/10 ) Overfull \hbox (37.09444pt too wide) in paragraph at lines 1470--1470 []\T1/ptm/m/it/10 nodelist\T1/pcr/m/n/10 ) Overfull \hbox (11.74474pt too wide) in paragraph at lines 1476--1476 []\T1/ptm/m/it/10 node_info\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1476--1476 \T1/ptm/m/it/10 De- Underfull \hbox (badness 10000) in paragraph at lines 1476--1476 \T1/ptm/m/it/10 moDf\T1/ptm/m/n/10 , Overfull \hbox (91.34473pt too wide) in paragraph at lines 1476--1476 \T1/ptm/m/it/10 res=0.008333333333333333\T1/pcr/m/n/10 ) Overfull \hbox (71.74474pt too wide) in paragraph at lines 1482--1482 []\T1/ptm/m/it/10 node_info\T1/ptm/m/n/10 , Overfull \hbox (41.2549pt too wide) in paragraph at lines 1482--1482 \T1/ptm/m/it/10 ex- Overfull \hbox (118.90427pt too wide) in paragraph at lines 1482--1482 \T1/ptm/m/it/10 tra_data_columns=[]\T1/ptm/m/n/10 , Overfull \hbox (151.34473pt too wide) in paragraph at lines 1482--1482 \T1/ptm/m/it/10 res=0.008333333333333333\T1/pcr/m/n/10 ) [19] Underfull \hbox (badness 10000) in paragraph at lines 1522--1524 []\T1/ptm/m/n/10 json ob-ject aka python dict that can be di-rectly passed to D e-mo-graph- Underfull \hbox (badness 10000) in paragraph at lines 1535--1535 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1535--1535 \T1/ptm/m/it/10 mean=0.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1547--1549 []\T1/ptm/m/n/10 json ob-ject aka python dict that can be di-rectly passed to D e-mo-graph- Underfull \hbox (badness 10000) in paragraph at lines 1560--1560 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1566--1568 []\T1/ptm/m/n/10 json ob-ject aka python dict that can be di-rectly passed to D e-mo-graph- Underfull \hbox (badness 10000) in paragraph at lines 1598--1598 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , \T1/ptm/m/it/10 low_prev\T1/ptm/m/n/10 , Underfull \hbox (badness 5091) in paragraph at lines 1598--1598 \T1/ptm/m/it/10 high_prev\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-scrip- Overfull \hbox (22.30493pt too wide) in paragraph at lines 1610--1610 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Overfull \hbox (7.6847pt too wide) in paragraph at lines 1610--1610 \T1/ptm/m/it/10 set- Overfull \hbox (34.0548pt too wide) in paragraph at lines 1610--1610 \T1/ptm/m/it/10 ting=1.0\T1/pcr/m/n/10 ) Overfull \hbox (10.30493pt too wide) in paragraph at lines 1616--1616 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1616--1616 \T1/ptm/m/it/10 pro- Overfull \hbox (58.54413pt too wide) in paragraph at lines 1616--1616 \T1/ptm/m/it/10 tected_setting=0.0\T1/ptm/m/n/10 , Overfull \hbox (9.20457pt too wide) in paragraph at lines 1616--1616 \T1/ptm/m/it/10 thresh- Overfull \hbox (53.51486pt too wide) in paragraph at lines 1616--1616 \T1/ptm/m/it/10 old_age=1825.0\T1/pcr/m/n/10 ) Overfull \hbox (46.30493pt too wide) in paragraph at lines 1622--1622 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Overfull \hbox (42.23488pt too wide) in paragraph at lines 1622--1622 \T1/ptm/m/it/10 mean- Overfull \hbox (44.91478pt too wide) in paragraph at lines 1622--1622 \T1/ptm/m/it/10 AgeAt- Overfull \hbox (28.90492pt too wide) in paragraph at lines 1622--1622 \T1/ptm/m/it/10 In- Overfull \hbox (32.23474pt too wide) in paragraph at lines 1622--1622 \T1/ptm/m/it/10 fec- Overfull \hbox (58.0548pt too wide) in paragraph at lines 1622--1622 \T1/ptm/m/it/10 tion=2.5\T1/pcr/m/n/10 ) [20] Overfull \hbox (55.80493pt too wide) in paragraph at lines 1628--1628 []\T1/ptm/m/it/10 demog\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1634--1634 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1634--1634 \T1/ptm/m/it/10 age_bins\T1/ptm/m/n/10 , Overfull \hbox (25.80493pt too wide) in paragraph at lines 1656--1656 []\T1/ptm/m/it/10 demog\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1674--1675 []\T1/pcr/b/n/10 "15-19", etc. up to "45-49", and a column named "Years" with Overfull \hbox (64.51184pt too wide) in paragraph at lines 1706--1706 [][]\T1/ptm/m/n/10 emod_api.demographics.PropertiesAndAttributes.IndividualAttr ibutes[][] Underfull \hbox (badness 10000) in paragraph at lines 1706--1706 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in-di-vid-ual_properties : Overfull \hbox (65.26187pt too wide) in paragraph at lines 1706--1706 [][]\T1/ptm/m/n/10 emod_api.demographics.PropertiesAndAttributes.IndividualProp erties[][] Underfull \hbox (badness 10000) in paragraph at lines 1706--1706 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 node_attributes: Overfull \hbox (45.31218pt too wide) in paragraph at lines 1706--1706 [][]\T1/ptm/m/n/10 emod_api.demographics.PropertiesAndAttributes.NodeAttributes [][] [21] Overfull \hbox (22.9045pt too wide) in paragraph at lines 1800--1800 []\T1/ptm/m/it/10 nodeid\T1/ptm/m/n/10 , \T1/ptm/m/it/10 res_in_deg=0.041666666 666666664\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1806--1806 []\T1/ptm/m/it/10 lat\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lon\T1/ptm/m/n/10 , Overfull \hbox (9.16464pt too wide) in paragraph at lines 1806--1806 \T1/ptm/m/it/10 res_in_deg=0.041666666666666664\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1812--1812 []\T1/ptm/m/it/10 lat\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lon\T1/ptm/m/n/10 , Overfull \hbox (45.7243pt too wide) in paragraph at lines 1833--1833 []\T1/ptm/m/it/10 distribution\T1/pcr/m/n/10 ) [22] Overfull \hbox (59.95372pt too wide) in paragraph at lines 1862--1862 []\T1/ptm/m/it/10 initial_distribution: Overfull \hbox (21.8143pt too wide) in paragraph at lines 1862--1862 \T1/ptm/m/it/10 List[[][]float[][]] Underfull \hbox (badness 10000) in paragraph at lines 1862--1862 \T1/ptm/m/it/10 = Overfull \hbox (4.85487pt too wide) in paragraph at lines 1862--1862 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (3.0149pt too wide) in paragraph at lines 1862--1862 \T1/ptm/m/it/10 prop- Overfull \hbox (27.15454pt too wide) in paragraph at lines 1862--1862 \T1/ptm/m/it/10 erty=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1862--1862 \T1/ptm/m/it/10 val- Underfull \hbox (badness 10000) in paragraph at lines 1862--1862 \T1/ptm/m/it/10 ues: Overfull \hbox (21.8143pt too wide) in paragraph at lines 1862--1862 \T1/ptm/m/it/10 List[[][]float[][]] Underfull \hbox (badness 10000) in paragraph at lines 1862--1862 \T1/ptm/m/it/10 = Overfull \hbox (4.85487pt too wide) in paragraph at lines 1862--1862 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (1.09485pt too wide) in paragraph at lines 1862--1862 \T1/ptm/m/it/10 tran- Underfull \hbox (badness 10000) in paragraph at lines 1862--1862 \T1/ptm/m/it/10 si- Overfull \hbox (4.02464pt too wide) in paragraph at lines 1862--1862 \T1/ptm/m/it/10 tions: Overfull \hbox (21.8143pt too wide) in paragraph at lines 1862--1862 \T1/ptm/m/it/10 List[[][]float[][]] Underfull \hbox (badness 10000) in paragraph at lines 1862--1862 \T1/ptm/m/it/10 = Overfull \hbox (4.85487pt too wide) in paragraph at lines 1862--1862 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (4.98474pt too wide) in paragraph at lines 1862--1862 \T1/ptm/m/it/10 trans- Underfull \hbox (badness 10000) in paragraph at lines 1862--1862 \T1/ptm/m/it/10 mis- Overfull \hbox (32.35434pt too wide) in paragraph at lines 1862--1862 \T1/ptm/m/it/10 sion_matrix: Overfull \hbox (21.8143pt too wide) in paragraph at lines 1862--1862 \T1/ptm/m/it/10 List[[][]float[][]] Underfull \hbox (badness 10000) in paragraph at lines 1862--1862 \T1/ptm/m/it/10 = Overfull \hbox (8.35487pt too wide) in paragraph at lines 1862--1862 \T1/ptm/m/it/10 None\T1/pcr/m/n/10 ) Overfull \hbox (76.12407pt too wide) in paragraph at lines 1876--1876 []\T1/ptm/m/it/10 individual_property: Overfull \hbox (269.15215pt too wide) in paragraph at lines 1876--1876 [][]\T1/ptm/m/n/10 emod_api.demographics.PropertiesAndAttributes.IndividualProp erty[][] Underfull \hbox (badness 10000) in paragraph at lines 1876--1876 \T1/ptm/m/it/10 = Overfull \hbox (20.35487pt too wide) in paragraph at lines 1876--1876 \T1/ptm/m/it/10 None\T1/pcr/m/n/10 ) Overfull \hbox (109.22414pt too wide) in paragraph at lines 1907--1907 []\T1/ptm/m/it/10 age_distribution_flag=None\T1/ptm/m/n/10 , Overfull \hbox (94.32413pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 age_distribution1=None\T1/ptm/m/n/10 , Overfull \hbox (94.32413pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 age_distribution2=None\T1/ptm/m/n/10 , Overfull \hbox (89.32413pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 age_distribution=None\T1/ptm/m/n/10 , Overfull \hbox (18.82483pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 preva- Overfull \hbox (116.0839pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 lence_distribution_flag=None\T1/ptm/m/n/10 , Overfull \hbox (18.82483pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 preva- Overfull \hbox (101.18388pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 lence_distribution1=None\T1/ptm/m/n/10 , Overfull \hbox (18.82483pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 preva- Overfull \hbox (101.18388pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 lence_distribution2=None\T1/ptm/m/n/10 , Overfull \hbox (6.57483pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 im- Overfull \hbox (8.79494pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 mu- Overfull \hbox (109.9839pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 nity_distribution_flag=None\T1/ptm/m/n/10 , Overfull \hbox (6.57483pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 im- Overfull \hbox (8.79494pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 mu- Overfull \hbox (95.0839pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 nity_distribution1=None\T1/ptm/m/n/10 , Overfull \hbox (6.57483pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 im- Overfull \hbox (8.79494pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 mu- Overfull \hbox (95.0839pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 nity_distribution2=None\T1/ptm/m/n/10 , Overfull \hbox (109.9838pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 risk_distribution_flag=None\T1/ptm/m/n/10 , Overfull \hbox (95.08379pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 risk_distribution1=None\T1/ptm/m/n/10 , Overfull \hbox (95.08379pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 risk_distribution2=None\T1/ptm/m/n/10 , Overfull \hbox (6.57483pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 mi- Overfull \hbox (10.31496pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 gra- Overfull \hbox (169.32329pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 tion_heterogeneity_distribution_flag=None\T1/ptm/m/n/10 , Overfull \hbox (6.57483pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 mi- Overfull \hbox (10.31496pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 gra- Overfull \hbox (154.42328pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 tion_heterogeneity_distribution1=None\T1/ptm/m/n/10 , Overfull \hbox (6.57483pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 mi- Overfull \hbox (10.31496pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 gra- Overfull \hbox (154.42328pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 tion_heterogeneity_distribution2=None\T1/ptm/m/n/10 , Overfull \hbox (12.48488pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 mor- Overfull \hbox (7.13475pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 tal- Overfull \hbox (85.0839pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 ity_distribution=None\T1/ptm/m/n/10 , Overfull \hbox (9.35475pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 sus- Overfull \hbox (10.45485pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 cep- Overfull \hbox (2.13475pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 ti- Overfull \hbox (7.13475pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 bil- Overfull \hbox (88.5839pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 ity_distribution=None\T1/pcr/m/n/10 ) [23] Underfull \hbox (badness 10000) in paragraph at lines 1912--1912 []\T1/ptm/m/it/10 distribution_values: List[[][]float[][]] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 1926--1926 []\T1/ptm/m/it/10 distribution_values=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-s ult_scale_factor=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 1946--1946 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 axis_units=None\T1/ptm/m /n/10 , \T1/ptm/m/it/10 num_distribution_axes=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1946--1946 \T1/ptm/m/it/10 pop-u-la-tion_groups=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-su lt_scale_factor=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- [24] Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 []\T1/ptm/m/it/10 airport: Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 [][]\T1/ptm/m/it/10 int[][] = Overfull \hbox (4.8247pt too wide) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 tude=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Overfull \hbox (0.98447pt too wide) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 birth_rate: Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 [][]\T1/ptm/m/it/10 float[][] = Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 coun- Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 try=None\T1/ptm/m/n/10 , Overfull \hbox (9.42453pt too wide) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 growth_rate: Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 [][]\T1/ptm/m/it/10 float[][] = Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 lat-i-tude: Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 [][]\T1/ptm/m/it/10 float[][] = Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 lon-gi-tude: Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 [][]\T1/ptm/m/it/10 float[][] = Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 meta-data: Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 [][]\T1/ptm/m/it/10 dict[][] = Overfull \hbox (22.25432pt too wide) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 tial_population: Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 [][]\T1/ptm/m/it/10 int[][] = Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 sea-port: Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 [][]\T1/ptm/m/it/10 int[][] = Overfull \hbox (50.58374pt too wide) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 val_habitat_multiplier: Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 List[[][]float[][]] Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 ini- Overfull \hbox (86.9334pt too wide) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 tial_vectors_per_species=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 in-fec-tiv- Overfull \hbox (15.02396pt too wide) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 ity_multiplier: Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 [][]\T1/ptm/m/it/10 float[][] = Overfull \hbox (15.23419pt too wide) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 tra_attributes: Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 [][]\T1/ptm/m/it/10 dict[][] = [25] [26] Underfull \hbox (badness 10000) in paragraph at lines 2052--2053 []\T1/pcr/b/n/10 distribution \T1/ptm/m/n/10 ^^U The se-lected dis-tri-bu-tion (need to come from Underfull \hbox (badness 10000) in paragraph at lines 2072--2072 []\T1/ptm/m/it/10 filename\T1/ptm/m/n/10 , \T1/ptm/m/it/10 dis-tri-bu-tion\T1/p tm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2073--2074 \T1/ptm/m/n/10 Set the \T1/pcr/m/n/10 ImmunityDistributionFlag\T1/ptm/m/n/10 , \T1/pcr/m/n/10 ImmunityDistribution1 \T1/ptm/m/n/10 and Underfull \hbox (badness 10000) in paragraph at lines 2100--2100 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2100--2100 \T1/ptm/m/it/10 fn\T1/ptm/m/n/10 , [27] Underfull \hbox (badness 10000) in paragraph at lines 2170--2170 []\T1/ptm/m/it/10 cb\T1/ptm/m/n/10 , Overfull \hbox (28.70406pt too wide) in paragraph at lines 2170--2170 \T1/ptm/m/it/10 use_existing=False\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 2196--2196 []\T1/ptm/m/it/10 cb\T1/ptm/m/n/10 , Overfull \hbox (34.70406pt too wide) in paragraph at lines 2196--2196 \T1/ptm/m/it/10 use_existing=False\T1/pcr/m/n/10 ) [28] Underfull \hbox (badness 10000) in paragraph at lines 2268--2268 []\T1/ptm/m/it/10 point\T1/ptm/m/n/10 , Overfull \hbox (37.41425pt too wide) in paragraph at lines 2268--2268 \T1/ptm/m/it/10 grid_id_2_cell_id\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2309--2309 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Event_Trigger\T1/ptm/m/n /10 , Overfull \hbox (73.22345pt too wide) in paragraph at lines 2309--2309 \T1/ptm/m/it/10 Node_Selection_Type=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 DISTANCE_ ONLY\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (57.50374pt too wide) in paragraph at lines 2309--2309 \T1/ptm/m/it/10 Max_Distance_To_Other_Nodes_Km=- [29] Underfull \hbox (badness 10000) in paragraph at lines 2344--2344 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 In-ter-ven- Underfull \hbox (badness 10000) in paragraph at lines 2387--2388 []\T1/pcr/b/n/10 but without the distribution, which is inferred. E.g., Underfull \hbox (badness 10000) in paragraph at lines 2408--2408 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Event_Or_Config=\TS1/ptm /m/it/10 '\T1/ptm/m/it/10 Event\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/ 10 Con-fig=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2408--2408 \T1/ptm/m/it/10 Event=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 NoTrigger\TS1/ptm/m/it/ 10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Ten-dency=1.0\T1/ptm/m/n/10 , \T1/ptm/m/it /10 Sin-gle_Use=True\T1/ptm/m/n/10 , [30] Underfull \hbox (badness 10000) in paragraph at lines 2452--2452 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Trig-gers\T1/ptm/m/n/10 , \T1/ptm/m/it/10 In-ter-ven-tions\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Prop- Underfull \hbox (badness 10000) in paragraph at lines 2452--2452 \T1/ptm/m/it/10 erty_Restrictions=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 De-mo- Underfull \hbox (badness 10000) in paragraph at lines 2452--2452 \T1/ptm/m/it/10 graphic_Coverage=1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar-get_Ag e_Min=0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar- Underfull \hbox (badness 10000) in paragraph at lines 2452--2452 \T1/ptm/m/it/10 get_Age_Max=45625\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar-get_Gende r=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 All\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/p tm/m/it/10 Tar- Underfull \hbox (badness 10000) in paragraph at lines 2452--2452 \T1/ptm/m/it/10 get_Residents_Only=False\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Durati on=- 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Black- Underfull \hbox (badness 10000) in paragraph at lines 2452--2452 \T1/ptm/m/it/10 out_Event_Trigger=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Black-ou t_Period=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2452--2452 \T1/ptm/m/it/10 Black-out_On_First_Occurrence=None\T1/ptm/m/n/10 , \T1/ptm/m/it /10 Dis-qual-i-fy- Underfull \hbox (badness 10000) in paragraph at lines 2514--2514 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar-get_Property_Key\T1/ ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2514--2514 \T1/ptm/m/it/10 Tar-get_Property_Value\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2514--2514 \T1/ptm/m/it/10 Daily_Probability=1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Max- Underfull \hbox (badness 10000) in paragraph at lines 2514--2514 \T1/ptm/m/it/10 i-mum_Duration=1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Revert=- Underfull \hbox (badness 10000) in paragraph at lines 2514--2514 \T1/ptm/m/it/10 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 In-ter-ven-tion_Name=\TS1/ptm /m/it/10 ''\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2514--2514 \T1/ptm/m/it/10 Event_Trigger_Distributed=\TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , [31] Underfull \hbox (badness 10000) in paragraph at lines 2522--2523 []\T1/pcr/b/n/10 The key part of the new key-value pair of the IP. Underfull \hbox (badness 10000) in paragraph at lines 2525--2526 []\T1/pcr/b/n/10 The value part of the new key-value pair of the IP. Underfull \hbox (badness 10000) in paragraph at lines 2531--2532 []\T1/pcr/b/n/10 The daily probability that an individual will move to the Underfull \hbox (badness 10000) in paragraph at lines 2534--2535 []\T1/pcr/b/n/10 The maximum amount of time individuals have to move Underfull \hbox (badness 10000) in paragraph at lines 2534--2535 \T1/pcr/b/n/10 to a new group. This timing works in conjunction with Underfull \hbox (badness 10000) in paragraph at lines 2537--2538 []\T1/pcr/b/n/10 The number of days before an individual moves back to their Underfull \hbox (badness 10000) in paragraph at lines 2540--2541 []\T1/pcr/b/n/10 Optional Intervention_Name. Useful if managing a replacement Underfull \hbox (badness 10000) in paragraph at lines 2543--2544 []\T1/pcr/b/n/10 Optional broadcast trigger to be published when PVC is Underfull \hbox (badness 10000) in paragraph at lines 2546--2547 []\T1/pcr/b/n/10 Optional broadcast trigger to be published when PVC is Underfull \hbox (badness 10000) in paragraph at lines 2564--2564 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Start_Day: [][]int[][]\T 1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2564--2564 \T1/ptm/m/it/10 Node_Ids=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Node- Underfull \hbox (badness 10000) in paragraph at lines 2564--2564 \T1/ptm/m/it/10 set_Config=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Num- Underfull \hbox (badness 10000) in paragraph at lines 2564--2564 \T1/ptm/m/it/10 ber_Repetitions: [][]int[][] = 1\T1/ptm/m/n/10 , Overfull \hbox (4.90335pt too wide) in paragraph at lines 2564--2564 \T1/ptm/m/it/10 Timesteps_Between_Repetitions: Underfull \hbox (badness 10000) in paragraph at lines 2564--2564 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Sched-uled_Campaign_Event\TS1/ptm/m/it/10 '\T 1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2564--2564 \T1/ptm/m/it/10 Prop-erty_Restrictions=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2564--2564 \T1/ptm/m/it/10 = 1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar-get_Age_Min=0\T1/ptm/ m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2564--2564 \T1/ptm/m/it/10 Tar-get_Age_Max=45625\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2564--2564 \T1/ptm/m/it/10 Tar-get_Residents_Only: Underfull \hbox (badness 10000) in paragraph at lines 2564--2564 [][]\T1/ptm/m/it/10 bool[][] = False\T1/ptm/m/n/10 , \T1/ptm/m/it/10 In-ter-ven - [32] Underfull \hbox (badness 10000) in paragraph at lines 2631--2631 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Start_Day: [][]int[][]\T 1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2631--2631 \T1/ptm/m/it/10 List[[][]str[][]]\T1/ptm/m/n/10 , \T1/ptm/m/it/10 In-ter-ven-ti on_List: Underfull \hbox (badness 10000) in paragraph at lines 2631--2631 \T1/ptm/m/it/10 List[[][]dict[][]]\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Node_Ids=Non e\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2631--2631 \T1/ptm/m/it/10 Node-set_Config=None\T1/ptm/m/n/10 , Overfull \hbox (17.59343pt too wide) in paragraph at lines 2631--2631 \T1/ptm/m/it/10 Node_Property_Restrictions=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2631--2631 \T1/ptm/m/it/10 Prop-erty_Restrictions=None\T1/ptm/m/n/10 , Overfull \hbox (4.90335pt too wide) in paragraph at lines 2631--2631 \T1/ptm/m/it/10 Timesteps_Between_Repetitions: Underfull \hbox (badness 10000) in paragraph at lines 2631--2631 [][]\T1/ptm/m/it/10 int[][] = - 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 De-mo- Underfull \hbox (badness 10000) in paragraph at lines 2631--2631 \T1/ptm/m/it/10 graphic_Coverage: [][]float[][] Underfull \hbox (badness 10000) in paragraph at lines 2631--2631 \T1/ptm/m/it/10 = 1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar-get_Age_Min=0\T1/ptm/ m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2631--2631 \T1/ptm/m/it/10 Tar-get_Age_Max=45625\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2631--2631 \T1/ptm/m/it/10 get_Residents_Only=False\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2631--2631 \T1/ptm/m/it/10 Duration=- 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Black- Underfull \hbox (badness 10000) in paragraph at lines 2631--2631 \T1/ptm/m/it/10 Black-out_Period=0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Black- Underfull \hbox (badness 10000) in paragraph at lines 2631--2631 \T1/ptm/m/it/10 out_On_First_Occurrence=0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2631--2631 \T1/ptm/m/it/10 Dis-qual-i-fy- Underfull \hbox (badness 10000) in paragraph at lines 2631--2631 \T1/ptm/m/it/10 ing_Properties=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 De- [33] Underfull \hbox (badness 6078) in paragraph at lines 2719--2719 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Base_Sensitivity: [][]fl oat[][] = Underfull \hbox (badness 10000) in paragraph at lines 2719--2719 \T1/ptm/m/it/10 Event_Trigger_Distributed: [][]str[][] Underfull \hbox (badness 10000) in paragraph at lines 2719--2719 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Event_Trigger_Expired: Underfull \hbox (badness 10000) in paragraph at lines 2719--2719 [][]\T1/ptm/m/it/10 str[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Pos-i- Underfull \hbox (badness 10000) in paragraph at lines 2719--2719 \T1/ptm/m/it/10 tive_Diagnosis_Intervention=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2719--2719 \T1/ptm/m/it/10 Pos-i-tive_Diagnosis_Event: Underfull \hbox (badness 10000) in paragraph at lines 2719--2719 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Pos-i-tiveRe-su lt\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Neg-a- Underfull \hbox (badness 10000) in paragraph at lines 2719--2719 \T1/ptm/m/it/10 tive_Diagnosis_Intervention=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2719--2719 \T1/ptm/m/it/10 Neg-a-tive_Diagnosis_Event: Underfull \hbox (badness 10000) in paragraph at lines 2719--2719 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Neg-a-tiveRe-su lt\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Treat- [34] Underfull \hbox (badness 10000) in paragraph at lines 2773--2773 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2773--2773 \T1/ptm/m/it/10 trig-ger\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-lay\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2773--2773 \T1/ptm/m/it/10 in-ter-ven-tion\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2773--2773 \T1/ptm/m/it/10 ip_targeting=[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2787--2788 []\T1/pcr/b/n/10 without the distribution, which is inferred. E.g., { Overfull \hbox (29.40492pt too wide) in paragraph at lines 2810--2810 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Overfull \hbox (45.52452pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 start_day\T1/ptm/m/n/10 , Overfull \hbox (23.02464pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 trig- Overfull \hbox (24.76476pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 gers\T1/ptm/m/n/10 , Overfull \hbox (16.35486pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 in- Overfull \hbox (19.48474pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 ter- Overfull \hbox (22.45485pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 ven- Overfull \hbox (23.3048pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 tion\T1/ptm/m/n/10 , Overfull \hbox (18.01491pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 de- Overfull \hbox (47.8247pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 lay=None\T1/ptm/m/n/10 , Overfull \hbox (49.62474pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 duration=- Overfull \hbox (5.24501pt too wide) in paragraph at lines 2810--2810 Overfull \hbox (12.74501pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 1\T1/ptm/m/n/10 , Overfull \hbox (84.58427pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 ip_targeting=None\T1/ptm/m/n/10 , Overfull \hbox (22.35486pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 cov- Overfull \hbox (16.70485pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 er- Overfull \hbox (41.23497pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 age=1.0\T1/ptm/m/n/10 , Overfull \hbox (20.0448pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 tar- Overfull \hbox (70.85468pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 get_age_min=0\T1/ptm/m/n/10 , Overfull \hbox (20.0448pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 tar- Overfull \hbox (92.51472pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 get_age_max=45625\T1/ptm/m/n/10 , Overfull \hbox (20.0448pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 tar- Overfull \hbox (60.13423pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 get_sex=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 All\TS1/ptm/m/it/10 ' \T1/ptm/m/n/10 , Overfull \hbox (20.0448pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 tar- Overfull \hbox (111.04373pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 get_residents_only=False\T1/ptm/m/n/10 , Overfull \hbox (30.03479pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 black- Overfull \hbox (45.61475pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 out=True\T1/ptm/m/n/10 , Overfull \hbox (107.23405pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 check_at_trigger=False\T1/pcr/m/n/10 ) [35] Underfull \hbox (badness 10000) in paragraph at lines 2830--2831 []\T1/pcr/b/n/10 without the distribution, which is inferred. E.g., { [36] Underfull \hbox (badness 10000) in paragraph at lines 2878--2878 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2878--2878 \T1/ptm/m/it/10 new_ip_key\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2878--2878 \T1/ptm/m/it/10 new_ip_value\T1/ptm/m/n/10 , Overfull \hbox (25.72469pt too wide) in paragraph at lines 2878--2878 \T1/ptm/m/it/10 change_age_in_days\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2878--2878 \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 2878--2878 \T1/ptm/m/it/10 vert_in_days\T1/ptm/m/n/10 , Overfull \hbox (8.6443pt too wide) in paragraph at lines 2878--2878 \T1/ptm/m/it/10 ip_targeting_key\T1/ptm/m/n/10 , Overfull \hbox (17.38419pt too wide) in paragraph at lines 2878--2878 \T1/ptm/m/it/10 ip_targeting_value\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2878--2878 \T1/ptm/m/it/10 cov-er- Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 trig- Overfull \hbox (7.23471pt too wide) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 new_ip_key: Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 [][]\T1/ptm/m/it/10 str[][]\T1/ptm/m/n/10 , Overfull \hbox (15.9746pt too wide) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 new_ip_value: Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 [][]\T1/ptm/m/it/10 str[][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 start_day: Underfull \hbox (badness 8019) in paragraph at lines 2919--2919 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , Overfull \hbox (4.01462pt too wide) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 daily_prob: Overfull \hbox (16.53465pt too wide) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 max_duration: Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 [][]\T1/ptm/m/it/10 int[][] = Overfull \hbox (8.43495pt too wide) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 9.3228e+35\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 re- Overfull \hbox (12.23436pt too wide) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 vert_in_days: Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 node_ids: Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (18.54387pt too wide) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 ip_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 cov-er-age: Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 [][]\T1/ptm/m/it/10 float[][] = Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar- Overfull \hbox (11.93463pt too wide) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 get_age_min: Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 [][]\T1/ptm/m/it/10 float[][] = Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar- Overfull \hbox (13.59468pt too wide) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 get_age_max: Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 [][]\T1/ptm/m/it/10 float[][] = Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 45625\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 tar- Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 get_sex: Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 [][]\T1/ptm/m/it/10 str[][] = Underfull \hbox (badness 5203) in paragraph at lines 2919--2919 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 All\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm /m/it/10 tar- Overfull \hbox (35.65398pt too wide) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 get_residents_only: Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 [][]\T1/ptm/m/it/10 bool[][] = Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 lay=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 lis-ten- Overfull \hbox (12.65463pt too wide) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 ing_duration: Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 black- Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 = True\T1/ptm/m/n/10 , Overfull \hbox (28.3443pt too wide) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 check_at_trigger: Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 [][]\T1/ptm/m/it/10 bool[][] = [37] [38] Underfull \hbox (badness 10000) in paragraph at lines 3008--3008 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Overfull \hbox (6.40475pt too wide) in paragraph at lines 3008--3008 \T1/ptm/m/it/10 new_ip_key\T1/ptm/m/n/10 , Overfull \hbox (15.14464pt too wide) in paragraph at lines 3008--3008 \T1/ptm/m/it/10 new_ip_value\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3008--3008 \T1/ptm/m/it/10 start_day: Underfull \hbox (badness 10000) in paragraph at lines 3008--3008 [][]\T1/ptm/m/it/10 int[][] = Underfull \hbox (badness 10000) in paragraph at lines 3008--3008 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 num- Overfull \hbox (21.31403pt too wide) in paragraph at lines 3008--3008 \T1/ptm/m/it/10 ber_repetitions: Underfull \hbox (badness 8019) in paragraph at lines 3008--3008 [][]\T1/ptm/m/it/10 int[][] = 1\T1/ptm/m/n/10 , Overfull \hbox (57.41364pt too wide) in paragraph at lines 3008--3008 \T1/ptm/m/it/10 timesteps_between_reps: Underfull \hbox (badness 10000) in paragraph at lines 3008--3008 \T1/ptm/m/it/10 node_ids: Underfull \hbox (badness 10000) in paragraph at lines 3008--3008 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 3008--3008 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (4.01462pt too wide) in paragraph at lines 3008--3008 \T1/ptm/m/it/10 daily_prob: Overfull \hbox (16.53465pt too wide) in paragraph at lines 3008--3008 \T1/ptm/m/it/10 max_duration: Underfull \hbox (badness 10000) in paragraph at lines 3008--3008 [][]\T1/ptm/m/it/10 int[][] = Overfull \hbox (8.43495pt too wide) in paragraph at lines 3008--3008 \T1/ptm/m/it/10 9.3228e+35\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3008--3008 \T1/ptm/m/it/10 re- Overfull \hbox (12.23436pt too wide) in paragraph at lines 3008--3008 \T1/ptm/m/it/10 vert_in_days: Overfull \hbox (18.54387pt too wide) in paragraph at lines 3008--3008 \T1/ptm/m/it/10 ip_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 3008--3008 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 3008--3008 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3008--3008 \T1/ptm/m/it/10 cov-er-age: Underfull \hbox (badness 10000) in paragraph at lines 3008--3008 [][]\T1/ptm/m/it/10 float[][] = Underfull \hbox (badness 10000) in paragraph at lines 3008--3008 \T1/ptm/m/it/10 1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar- Overfull \hbox (11.93463pt too wide) in paragraph at lines 3008--3008 \T1/ptm/m/it/10 get_age_min: Underfull \hbox (badness 10000) in paragraph at lines 3008--3008 [][]\T1/ptm/m/it/10 float[][] = Underfull \hbox (badness 10000) in paragraph at lines 3008--3008 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar- Overfull \hbox (13.59468pt too wide) in paragraph at lines 3008--3008 \T1/ptm/m/it/10 get_age_max: Underfull \hbox (badness 10000) in paragraph at lines 3008--3008 [][]\T1/ptm/m/it/10 float[][] = Underfull \hbox (badness 10000) in paragraph at lines 3008--3008 \T1/ptm/m/it/10 45625\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3008--3008 \T1/ptm/m/it/10 tar- Underfull \hbox (badness 10000) in paragraph at lines 3008--3008 \T1/ptm/m/it/10 get_sex: Underfull \hbox (badness 10000) in paragraph at lines 3008--3008 [][]\T1/ptm/m/it/10 str[][] = Underfull \hbox (badness 5203) in paragraph at lines 3008--3008 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 All\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm /m/it/10 tar- Overfull \hbox (35.65398pt too wide) in paragraph at lines 3008--3008 \T1/ptm/m/it/10 get_residents_only: Underfull \hbox (badness 10000) in paragraph at lines 3008--3008 [][]\T1/ptm/m/it/10 bool[][] = [39] [40] Underfull \hbox (badness 10000) in paragraph at lines 3077--3077 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar- Underfull \hbox (badness 10000) in paragraph at lines 3077--3077 \T1/ptm/m/it/10 tar-get_property_value: Underfull \hbox (badness 10000) in paragraph at lines 3077--3077 [][]\T1/ptm/m/it/10 str[][]\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day: Underfull \hbox (badness 10000) in paragraph at lines 3077--3077 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 num- Underfull \hbox (badness 10000) in paragraph at lines 3077--3077 \T1/ptm/m/it/10 timesteps_between_reps: Underfull \hbox (badness 5878) in paragraph at lines 3077--3077 \T1/ptm/m/it/10 = 9.3228e+35\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-vert: Underfull \hbox (badness 10000) in paragraph at lines 3077--3077 \T1/ptm/m/it/10 = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ip_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 3077--3077 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar- Underfull \hbox (badness 6316) in paragraph at lines 3077--3077 \T1/ptm/m/it/10 get_age_min: [][]float[][] = Underfull \hbox (badness 10000) in paragraph at lines 3077--3077 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar-get_age_max: Underfull \hbox (badness 10000) in paragraph at lines 3077--3077 [][]\T1/ptm/m/it/10 float[][] = 45625\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar- Underfull \hbox (badness 8000) in paragraph at lines 3077--3077 \T1/ptm/m/it/10 get_sex: [][]str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 All\TS 1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3077--3077 \T1/ptm/m/it/10 tar-get_residents_only: Underfull \hbox (badness 10000) in paragraph at lines 3077--3077 [][]\T1/ptm/m/it/10 bool[][] = False\T1/ptm/m/n/10 , \T1/ptm/m/it/10 trig- Underfull \hbox (badness 10000) in paragraph at lines 3077--3077 \T1/ptm/m/it/10 ger_condition_list: Underfull \hbox (badness 10000) in paragraph at lines 3077--3077 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 trig- Underfull \hbox (badness 10000) in paragraph at lines 3077--3077 \T1/ptm/m/it/10 gered_campaign_delay: Underfull \hbox (badness 10000) in paragraph at lines 3077--3077 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lis-ten- Underfull \hbox (badness 10000) in paragraph at lines 3077--3077 \T1/ptm/m/it/10 ing_duration: [][]int[][] Underfull \hbox (badness 10000) in paragraph at lines 3077--3077 \T1/ptm/m/it/10 = - 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 black- Overfull \hbox (11.68343pt too wide) in paragraph at lines 3077--3077 \T1/ptm/m/it/10 check_eligibility_at_trigger: [41] [42] Underfull \hbox (badness 10000) in paragraph at lines 3196--3196 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 nodeto\T1/ptm/m/n/10 , \ T1/ptm/m/it/10 start_day: Underfull \hbox (badness 8056) in paragraph at lines 3196--3196 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age: [][ ]float[][] Underfull \hbox (badness 7851) in paragraph at lines 3196--3196 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar-get_age: [][]dict[][ ] Underfull \hbox (badness 10000) in paragraph at lines 3196--3196 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 nodes_from_ids: Underfull \hbox (badness 10000) in paragraph at lines 3196--3196 \T1/ptm/m/it/10 List[[][]int[][]] = None\T1/ptm/m/n/10 , Overfull \hbox (5.56337pt too wide) in paragraph at lines 3196--3196 \T1/ptm/m/it/10 ind_property_restrictions=None\T1/ptm/m/n/10 , Overfull \hbox (12.22342pt too wide) in paragraph at lines 3196--3196 \T1/ptm/m/it/10 node_property_restrictions=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3196--3196 \T1/ptm/m/it/10 trig-gered_campaign_delay=0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3196--3196 \T1/ptm/m/it/10 trig-ger_condition_list=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3225--3229 []\T1/ptm/m/n/10 {^^PDuration_Before_Leaving_Distribution^^Q:^^QGAUSSIAN_DISTRI BUTION^^Q, Underfull \hbox (badness 10000) in paragraph at lines 3225--3229 \T1/ptm/m/n/10 ^^PDu-ra-tion_Before_Leaving_Gaussian_Mean^^Q: 14, ^^PDu- Underfull \hbox (badness 10000) in paragraph at lines 3225--3229 \T1/ptm/m/n/10 ra-tion_Before_Leaving_Gaussian_Std_Dev^^Q 3} {^^PDu-ra- Underfull \hbox (badness 10000) in paragraph at lines 3225--3229 \T1/ptm/m/n/10 tion_Before_Leaving_Distribution^^Q:^^QPOISSON_DISTRIBUTION^^Q, ^^PDu-ra- Underfull \hbox (badness 10000) in paragraph at lines 3238--3241 []\T1/ptm/m/n/10 {^^PDuration_At_Node_Distribution^^Q:^^QGAUSSIAN_DISTRIBUTION^ ^Q, ^^PDu-ra- Underfull \hbox (badness 10000) in paragraph at lines 3238--3241 \T1/ptm/m/n/10 tion_At_Node_Gaussian_Mean^^Q: 14, ^^PDu-ra-tion_At_Node_Gaussia n_Std_Dev^^Q Underfull \hbox (badness 10000) in paragraph at lines 3238--3241 \T1/ptm/m/n/10 3} {^^PDu-ra-tion_At_Node_Distribution^^Q:^^QPOISSON_DISTRIBUTIO N^^Q, ^^PDu-ra- [43] Overfull \hbox (19.69089pt too wide) in paragraph at lines 3285--3289 \T1/ptm/m/n/10 from emod_api im-port cam-paign as camp dan = {^^PDu-ra-tion_At_ Node_Distribution^^Q:^^QPOISSON_DISTRIBUTION^^Q, Overfull \hbox (57.24088pt too wide) in paragraph at lines 3285--3289 \T1/ptm/m/n/10 ^^PDu-ra-tion_At_Node_Poisson_Mean^^Q 30} dbl = {^^PDu-ra-tion_B efore_Leaving_Distribution^^Q:^^QGAUSSIAN_DISTRIBUTION^^Q, Underfull \hbox (badness 10000) in paragraph at lines 3290--3295 [] Underfull \hbox (badness 10000) in paragraph at lines 3306--3306 \T1/ptm/m/it/10 pro-file=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 CONST\TS1/ptm/m/it/1 0 '\T1/ptm/m/n/10 , ! LaTeX Error: Too deeply nested. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.3315 ...{CONST(ANT)}] \leavevmode\begin{itemize} [44] Underfull \hbox (badness 10000) in paragraph at lines 3377--3377 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day=1\T1/ptm/m/n/1 0 , Underfull \hbox (badness 10000) in paragraph at lines 3377--3377 \T1/ptm/m/it/10 new_infectivity=1.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3377--3377 \T1/ptm/m/it/10 pro-file=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 CONST\TS1/ptm/m/it/1 0 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3377--3377 \T1/ptm/m/it/10 node_ids=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3377--3377 \T1/ptm/m/it/10 re-cur-ring=True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3385--3385 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3396--3396 \T1/ptm/m/it/10 age=0.01\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ig-nore_immunity=None\ T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3405--3405 []\T1/ptm/m/it/10 campaign_builder\T1/ptm/m/n/10 , \T1/ptm/m/it/10 timestep\T1/ ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3439--3439 \T1/ptm/m/it/10 ef-fi-cacy=1.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3439--3439 \T1/ptm/m/it/10 sv_name=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Vaccine\TS1/ptm/m/it/ 10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3439--3439 \T1/ptm/m/it/10 wan-ing_duration=100\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3439--3439 \T1/ptm/m/it/10 d_a_d=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3439--3439 \T1/ptm/m/it/10 cost_to_consumer=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3439--3439 \T1/ptm/m/it/10 e_i_r=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in-ter-ven- [45] Underfull \hbox (badness 10000) in paragraph at lines 3460--3460 []\T1/ptm/m/it/10 timestep\T1/ptm/m/n/10 , \T1/ptm/m/it/10 file- Underfull \hbox (badness 10000) in paragraph at lines 3477--3477 []\T1/ptm/m/it/10 schema_path\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ini-tial=1.0\T1/p tm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3477--3477 \T1/ptm/m/it/10 box_duration=365\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3477--3477 \T1/ptm/m/it/10 de-cay_rate=0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de- [46] Underfull \hbox (badness 5548) in paragraph at lines 3606--3609 []\T1/ptm/m/n/10 EMOD/DTK for-mat mi-gra-tion files (and as-so-ci-ated meta-dat a files) can be writ-ten with mi-gra- [47] [48] Underfull \hbox (badness 10000) in paragraph at lines 3872--3872 \T1/ptm/m/it/10 num_nodes=100\T1/ptm/m/n/10 , \T1/ptm/m/it/10 mig_factor=1.0\T1 /ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3872--3872 \T1/ptm/m/it/10 frac_rural=0.3\T1/ptm/m/n/10 , \T1/ptm/m/it/10 id_ref=\TS1/ptm/ m/it/10 '\T1/ptm/m/it/10 from_params\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm/ m/it/10 mi- Overfull \hbox (68.98433pt too wide) in paragraph at lines 3883--3883 []\T1/ptm/m/it/10 demographics_file_path: Underfull \hbox (badness 10000) in paragraph at lines 3883--3883 [][]\T1/ptm/m/it/10 str[][]\T1/ptm/m/n/10 , Overfull \hbox (2.42482pt too wide) in paragraph at lines 3883--3883 \T1/ptm/m/it/10 params: Underfull \hbox (badness 10000) in paragraph at lines 3883--3883 [][]\T1/ptm/m/it/10 str[][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3883--3883 \T1/ptm/m/it/10 id_ref: Underfull \hbox (badness 10000) in paragraph at lines 3883--3883 [][]\T1/ptm/m/it/10 str[][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3883--3883 \T1/ptm/m/it/10 mi-gra- Overfull \hbox (24.21457pt too wide) in paragraph at lines 3883--3883 \T1/ptm/m/it/10 tion_type=1\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 3883--3883 \OMS/cmsy/m/n/10 !$ Overfull \hbox (135.19371pt too wide) in paragraph at lines 3883--3883 [][]\T1/ptm/m/it/10 emod_api.migration.migration.Migration[][] Overfull \hbox (2.15437pt too wide) in paragraph at lines 3911--3911 []\T1/ptm/m/it/10 demographics_file_path\T1/ptm/m/n/10 , [49] Overfull \hbox (24.70302pt too wide) in paragraph at lines 3965--3965 []\T1/ptm/m/it/10 path_to_binary\T1/ptm/m/n/10 , \T1/ptm/m/it/10 path_to_write_ schema=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 schema.json\TS1/ptm/m/it/10 '\T1/pcr/m /n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 3986--3986 []\T1/ptm/m/it/10 input_serpop_path\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3986--3986 \T1/ptm/m/it/10 mod_fn=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4007--4007 []\T1/ptm/m/it/10 file: [50] [51] Underfull \hbox (badness 10000) in paragraph at lines 4133--4133 []\T1/ptm/m/it/10 name: [][]str[][]\T1/ptm/m/n/10 , \T1/ptm/m/it/10 han-dle\T1/ ptm/m/n/10 , \T1/ptm/m/it/10 cur- Underfull \hbox (badness 10000) in paragraph at lines 4168--4168 []\T1/ptm/m/it/10 handle\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cur- [52] Underfull \hbox (badness 6493) in paragraph at lines 4297--4297 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 byte-count\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 : 0, \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 chunkcount\TS1/ptm/m/it/10 '\T1/ptm/m/it/ 10 : Underfull \hbox (badness 10000) in paragraph at lines 4297--4297 \T1/ptm/m/it/10 0, \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 chunk-sizes\TS1/ptm/m/it/1 0 '\T1/ptm/m/it/10 : [], \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 com- Underfull \hbox (badness 6575) in paragraph at lines 4297--4297 \T1/ptm/m/it/10 22 20:30:21 2022\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 , \TS1/ptm/m/ it/10 '\T1/ptm/m/it/10 en-gine\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 : [53] [54] Underfull \hbox (badness 10000) in paragraph at lines 4531--4531 \T1/ptm/m/it/10 List[[][]int[][]] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 data: Underfull \hbox (badness 10000) in paragraph at lines 4531--4531 \T1/ptm/m/it/10 numpy.array = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start: [55] [56] [57] [58] [59] [60] Chapter 4. [61] [62] Overfull \hbox (66.6225pt too wide) in paragraph at lines 5070--5071 []\T1/pcr/m/n/10 emod_api.config.default_from_schema_no_validation\T1/ptm/m/n/1 0 , Overfull \hbox (36.6225pt too wide) in paragraph at lines 5071--5072 []\T1/pcr/m/n/10 emod_api.config.dtk_post_process_adhocevents\T1/ptm/m/n/10 , Overfull \hbox (30.6225pt too wide) in paragraph at lines 5072--5073 []\T1/pcr/m/n/10 emod_api.config.dtk_pre_process_adhocevents\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 5073--5074 []\T1/pcr/m/n/10 emod_api.config.dtk_pre_process_w5ml\T1/ptm/m/n/10 , Overfull \hbox (12.6225pt too wide) in paragraph at lines 5081--5082 []\T1/pcr/m/n/10 emod_api.demographics.demographics_utils\T1/ptm/m/n/10 , Overfull \hbox (30.6225pt too wide) in paragraph at lines 5082--5083 []\T1/pcr/m/n/10 emod_api.demographics.DemographicsGenerator\T1/ptm/m/n/10 , Overfull \hbox (72.6225pt too wide) in paragraph at lines 5083--5084 []\T1/pcr/m/n/10 emod_api.demographics.DemographicsInputDataParsers\T1/ptm/m/n/ 10 , Overfull \hbox (30.6225pt too wide) in paragraph at lines 5084--5085 []\T1/pcr/m/n/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 , Overfull \hbox (6.6225pt too wide) in paragraph at lines 5085--5086 []\T1/pcr/m/n/10 emod_api.demographics.grid_construction\T1/ptm/m/n/10 , Overfull \hbox (42.6225pt too wide) in paragraph at lines 5087--5088 []\T1/pcr/m/n/10 emod_api.demographics.PreDefinedDistributions\T1/ptm/m/n/10 , Overfull \hbox (42.6225pt too wide) in paragraph at lines 5088--5089 []\T1/pcr/m/n/10 emod_api.demographics.PropertiesAndAttributes\T1/ptm/m/n/10 , Overfull \hbox (0.6225pt too wide) in paragraph at lines 5092--5093 []\T1/pcr/m/n/10 emod_api.interventions.import_pressure\T1/ptm/m/n/10 , Overfull \hbox (0.6225pt too wide) in paragraph at lines 5094--5095 []\T1/pcr/m/n/10 emod_api.interventions.node_multiplier\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 5096--5097 []\T1/pcr/m/n/10 emod_api.interventions.simple_vaccine\T1/ptm/m/n/10 , Overfull \hbox (6.6225pt too wide) in paragraph at lines 5103--5104 []\T1/pcr/m/n/10 emod_api.schema.dtk_post_process_schema\T1/ptm/m/n/10 , Overfull \hbox (0.6225pt too wide) in paragraph at lines 5107--5108 []\T1/pcr/m/n/10 emod_api.serialization.CensusAndModPop\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 5108--5109 []\T1/pcr/m/n/10 emod_api.serialization.dtkFileSupport\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 5110--5111 []\T1/pcr/m/n/10 emod_api.serialization.dtkFileUtility\T1/ptm/m/n/10 , Overfull \hbox (30.6225pt too wide) in paragraph at lines 5111--5112 []\T1/pcr/m/n/10 emod_api.serialization.SerializedPopulation\T1/ptm/m/n/10 , [63] (./institute-for-disease-modeling-emod-api.ind [64] Overfull \hbox (88.70953pt too wide) in paragraph at lines 8--10 []\T1/pcr/m/n/10 add() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Pr opertiesAndAttributes.IndividualProperties Underfull \hbox (badness 10000) in paragraph at lines 11--13 []\T1/pcr/m/n/10 add_migration_event() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-u le Overfull \hbox (148.70953pt too wide) in paragraph at lines 13--15 []\T1/pcr/m/n/10 add_parameter() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demog raphics.PropertiesAndAttributes.IndividualProperties Overfull \hbox (61.87129pt too wide) in paragraph at lines 15--17 []\T1/pcr/m/n/10 add_parameter() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demog raphics.Updateable.Updateable Underfull \hbox (badness 10000) in paragraph at lines 17--19 []\T1/pcr/m/n/10 AddAgeDependentTransmission() Overfull \hbox (34.06111pt too wide) in paragraph at lines 17--19 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 19--21 []\T1/pcr/m/n/10 AddIndividualPropertyAndHINT() Overfull \hbox (34.06111pt too wide) in paragraph at lines 19--21 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 21--23 []\T1/pcr/m/n/10 AgeStructureUNWPP() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (15.62103pt too wide) in paragraph at lines 21--23 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Overfull \hbox (7.30118pt too wide) in paragraph at lines 23--25 []\T1/pcr/m/n/10 AgesYears() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration .migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 25--26 []\T1/pcr/m/n/10 AIR \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.migrati on.Migration at- Overfull \hbox (37.49991pt too wide) in paragraph at lines 26--28 []\T1/pcr/m/n/10 append() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializatio n.dtkFileTools.DtkFile.Contents Overfull \hbox (32.4899pt too wide) in paragraph at lines 28--30 []\T1/pcr/m/n/10 append() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializatio n.dtkFileTools.DtkFile.Objects Underfull \hbox (badness 10000) in paragraph at lines 30--32 []\T1/pcr/m/n/10 application() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (7.95116pt too wide) in paragraph at lines 30--32 \T1/ptm/m/it/10 emod_api.config.dtk_post_process_adhocevents\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 32--34 []\T1/pcr/m/n/10 application() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (4.2412pt too wide) in paragraph at lines 32--34 \T1/ptm/m/it/10 emod_api.config.dtk_pre_process_adhocevents\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 34--36 []\T1/pcr/m/n/10 application() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 34--36 \T1/ptm/m/it/10 emod_api.config.dtk_pre_process_w5ml\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 36--38 []\T1/pcr/m/n/10 application() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 36--38 \T1/ptm/m/it/10 emod_api.schema.dtk_post_process_schema\T1/ptm/m/n/10 ), Overfull \hbox (85.96114pt too wide) in paragraph at lines 38--40 []\T1/pcr/m/n/10 apply_overlay() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demog raphics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 40--42 []\T1/pcr/m/n/10 apply_to_defaults_or_nodes() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 i n mod-ule Underfull \hbox (badness 10000) in paragraph at lines 40--42 \T1/ptm/m/it/10 emod_api.demographics.demographics_utils\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 42--44 []\T1/pcr/m/n/10 arcsec_to_deg() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (17.1711pt too wide) in paragraph at lines 42--44 \T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/ptm/m/n/10 ), Overfull \hbox (62.83089pt too wide) in paragraph at lines 44--46 []\T1/pcr/m/n/10 as_dataframe() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channe lreports.channels.ChannelReport Overfull \hbox (41.61118pt too wide) in paragraph at lines 46--48 []\T1/pcr/m/n/10 as_dictionary() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.chann elreports.channels.Channel Overfull \hbox (37.71117pt too wide) in paragraph at lines 48--50 []\T1/pcr/m/n/10 as_dictionary() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.chann elreports.channels.Header Underfull \hbox (badness 10000) in paragraph at lines 52--54 []\T1/pcr/m/n/10 Author() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.mi gration.Migration Underfull \hbox (badness 10000) in paragraph at lines 61--63 []\T1/pcr/m/n/10 BaseInputFile \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 61--63 \T1/ptm/m/it/10 emod_api.demographics.BaseInputFile\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 63--64 []\T1/pcr/m/n/10 basicNode() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 64--66 []\T1/pcr/m/n/10 birth_rate() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demograp hics.Node.Node Underfull \hbox (badness 10000) in paragraph at lines 66--68 []\T1/pcr/m/n/10 BroadcastEvent() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 68--70 []\T1/pcr/m/n/10 BroadcastEventToOtherNodes() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 i n mod-ule Overfull \hbox (23.59027pt too wide) in paragraph at lines 71--73 []\T1/pcr/m/n/10 byte_count() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializ ation.dtkFileTools.DtkFile Underfull \hbox (badness 10000) in paragraph at lines 76--78 []\T1/pcr/m/n/10 change_individual_property() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 i n mod-ule Underfull \hbox (badness 7291) in paragraph at lines 78--80 []\T1/pcr/m/n/10 change_individual_property_at_age() \T1/ptm/m/n/10 (\T1/ptm/m/ it/10 in [65] Underfull \hbox (badness 10000) in paragraph at lines 80--82 []\T1/pcr/m/n/10 change_individual_property_scheduled() Underfull \hbox (badness 10000) in paragraph at lines 82--84 []\T1/pcr/m/n/10 change_individual_property_triggered() Underfull \hbox (badness 10000) in paragraph at lines 84--86 []\T1/pcr/m/n/10 change_ser_pop() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 84--86 \T1/ptm/m/it/10 emod_api.serialization.CensusAndModPop\T1/ptm/m/n/10 ), Overfull \hbox (68.83089pt too wide) in paragraph at lines 87--89 []\T1/pcr/m/n/10 channel_names() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.chann elreports.channels.ChannelReport Underfull \hbox (badness 10000) in paragraph at lines 89--91 []\T1/pcr/m/n/10 ChannelReport \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Overfull \hbox (38.83089pt too wide) in paragraph at lines 91--93 []\T1/pcr/m/n/10 channels() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channelrep orts.channels.ChannelReport Overfull \hbox (29.59027pt too wide) in paragraph at lines 93--95 []\T1/pcr/m/n/10 chunk_count() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.seriali zation.dtkFileTools.DtkFile Overfull \hbox (29.59027pt too wide) in paragraph at lines 95--97 []\T1/pcr/m/n/10 chunk_sizes() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.seriali zation.dtkFileTools.DtkFile Overfull \hbox (36.91025pt too wide) in paragraph at lines 99--101 []\T1/pcr/m/n/10 compress() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializat ion.dtkFileSupport.EllZeeFour Overfull \hbox (21.29066pt too wide) in paragraph at lines 101--103 []\T1/pcr/m/n/10 compress() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializat ion.dtkFileSupport.Snappy Overfull \hbox (50.91016pt too wide) in paragraph at lines 103--105 []\T1/pcr/m/n/10 compress() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializat ion.dtkFileSupport.Uncompressed Underfull \hbox (badness 10000) in paragraph at lines 105--107 []\T1/pcr/m/n/10 compress() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (23.59027pt too wide) in paragraph at lines 107--109 []\T1/pcr/m/n/10 compressed() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializ ation.dtkFileTools.DtkFile Overfull \hbox (29.59027pt too wide) in paragraph at lines 109--111 []\T1/pcr/m/n/10 compression() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.seriali zation.dtkFileTools.DtkFile Underfull \hbox (badness 10000) in paragraph at lines 111--113 []\T1/pcr/m/n/10 ConstantDistribution \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Overfull \hbox (14.56071pt too wide) in paragraph at lines 111--113 \T1/ptm/m/it/10 emod_api.demographics.PreDefinedDistributions\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 113--115 []\T1/pcr/m/n/10 construct() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 113--115 \T1/ptm/m/it/10 emod_api.demographics.grid_construction\T1/ptm/m/n/10 ), Overfull \hbox (46.65079pt too wide) in paragraph at lines 115--117 \T1/ptm/m/it/10 emod_api.demographics.DemographicsInputDataParsers\T1/ptm/m/n/1 0 ), Overfull \hbox (97.2796pt too wide) in paragraph at lines 117--119 []\T1/pcr/m/n/10 copy() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.P reDefinedDistributions.ConstantDistribution Overfull \hbox (12.84114pt too wide) in paragraph at lines 119--121 []\T1/pcr/m/n/10 creation_date() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.weath er.weather.Metadata Overfull \hbox (7.47115pt too wide) in paragraph at lines 121--123 []\T1/pcr/m/n/10 creation_date() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.weath er.weather.Weather Underfull \hbox (badness 10000) in paragraph at lines 126--128 []\T1/pcr/m/n/10 data() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channelreports .channels.Channel Underfull \hbox (badness 10000) in paragraph at lines 128--130 []\T1/pcr/m/n/10 data() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.spatialreports .spatial.SpatialNode Underfull \hbox (badness 10000) in paragraph at lines 134--136 []\T1/pcr/m/n/10 datavalue_count() Underfull \hbox (badness 10000) in paragraph at lines 134--136 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.weather.weather.Metadata prop- Underfull \hbox (badness 10000) in paragraph at lines 136--138 []\T1/pcr/m/n/10 datavalue_count() Underfull \hbox (badness 10000) in paragraph at lines 136--138 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.weather.weather.Weather prop- Overfull \hbox (20.22127pt too wide) in paragraph at lines 138--140 []\T1/pcr/m/n/10 DatavalueCount() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migr ation.migration.Layer Overfull \hbox (37.30118pt too wide) in paragraph at lines 140--142 []\T1/pcr/m/n/10 DatavalueCount() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migr ation.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 142--144 []\T1/pcr/m/n/10 date() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serialization. dtkFileTools.DtkFile Overfull \hbox (19.30118pt too wide) in paragraph at lines 144--146 []\T1/pcr/m/n/10 DateCreated() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migrati on.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 146--148 []\T1/pcr/m/n/10 default_population Underfull \hbox (badness 10000) in paragraph at lines 146--148 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Node.Node at- Underfull \hbox (badness 7291) in paragraph at lines 148--150 []\T1/pcr/m/n/10 DefaultSusceptibilityDistribution() \T1/ptm/m/n/10 (\T1/ptm/m/ it/10 in Overfull \hbox (46.96086pt too wide) in paragraph at lines 148--150 \T1/ptm/m/it/10 mod-ule emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/ 10 ), Underfull \hbox (badness 10000) in paragraph at lines 150--152 []\T1/pcr/m/n/10 DelayedIntervention() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 152--154 []\T1/pcr/m/n/10 Demographics \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 152--154 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 154--156 []\T1/pcr/m/n/10 DemographicsGenerator \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Overfull \hbox (17.1711pt too wide) in paragraph at lines 154--156 \T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 156--158 []\T1/pcr/m/n/10 DemographicsOverlay \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 156--158 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 158--160 []\T1/pcr/m/n/10 DemographicsType \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Overfull \hbox (17.1711pt too wide) in paragraph at lines 158--160 \T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 160--162 []\T1/pcr/m/n/10 do_mapping_from_events() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule Overfull \hbox (4.2412pt too wide) in paragraph at lines 160--162 \T1/ptm/m/it/10 emod_api.config.dtk_pre_process_adhocevents\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 163--165 []\T1/pcr/m/n/10 dtk_to_schema() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (56.83089pt too wide) in paragraph at lines 165--167 []\T1/pcr/m/n/10 dtk_version() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channel reports.channels.ChannelReport Overfull \hbox (25.71117pt too wide) in paragraph at lines 167--169 []\T1/pcr/m/n/10 dtk_version() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channel reports.channels.Header [66] Underfull \hbox (badness 10000) in paragraph at lines 170--172 []\T1/pcr/m/n/10 DtkFile.Contents \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 172--174 []\T1/pcr/m/n/10 DtkFile.Objects \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 174--176 []\T1/pcr/m/n/10 DtkFileV1 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 176--178 []\T1/pcr/m/n/10 DtkFileV2 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 178--180 []\T1/pcr/m/n/10 DtkFileV2.NodesV2 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 180--182 []\T1/pcr/m/n/10 DtkFileV3 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 182--184 []\T1/pcr/m/n/10 DtkFileV3.NodesV3 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 184--186 []\T1/pcr/m/n/10 DtkFileV4 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 186--188 []\T1/pcr/m/n/10 DtkHeader \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 188--190 []\T1/pcr/m/n/10 duplicate_nodeID_check() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule Overfull \hbox (46.65079pt too wide) in paragraph at lines 188--190 \T1/ptm/m/it/10 emod_api.demographics.DemographicsInputDataParsers\T1/ptm/m/n/1 0 ), Underfull \hbox (badness 10000) in paragraph at lines 193--195 []\T1/pcr/m/n/10 EllZeeFour \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Overfull \hbox (64.1225pt too wide) in paragraph at lines 207--208 []\T1/pcr/m/n/10 emod_api.config.default_from_schema_no_validation Overfull \hbox (34.1225pt too wide) in paragraph at lines 209--210 []\T1/pcr/m/n/10 emod_api.config.dtk_post_process_adhocevents Overfull \hbox (28.1225pt too wide) in paragraph at lines 211--212 []\T1/pcr/m/n/10 emod_api.config.dtk_pre_process_adhocevents Overfull \hbox (10.1225pt too wide) in paragraph at lines 229--230 []\T1/pcr/m/n/10 emod_api.demographics.demographics_utils Overfull \hbox (28.1225pt too wide) in paragraph at lines 231--232 []\T1/pcr/m/n/10 emod_api.demographics.DemographicsGenerator Overfull \hbox (70.1225pt too wide) in paragraph at lines 233--234 []\T1/pcr/m/n/10 emod_api.demographics.DemographicsInputDataParsers Overfull \hbox (28.1225pt too wide) in paragraph at lines 235--236 []\T1/pcr/m/n/10 emod_api.demographics.DemographicsTemplates Overfull \hbox (4.1225pt too wide) in paragraph at lines 237--238 []\T1/pcr/m/n/10 emod_api.demographics.grid_construction Overfull \hbox (40.1225pt too wide) in paragraph at lines 241--242 []\T1/pcr/m/n/10 emod_api.demographics.PreDefinedDistributions Overfull \hbox (40.1225pt too wide) in paragraph at lines 243--244 []\T1/pcr/m/n/10 emod_api.demographics.PropertiesAndAttributes Overfull \hbox (4.1225pt too wide) in paragraph at lines 273--274 []\T1/pcr/m/n/10 emod_api.schema.dtk_post_process_schema [67] Overfull \hbox (28.1225pt too wide) in paragraph at lines 289--290 []\T1/pcr/m/n/10 emod_api.serialization.SerializedPopulation Overfull \hbox (15.62103pt too wide) in paragraph at lines 301--303 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 303--305 []\T1/pcr/m/n/10 examine_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 313--315 []\T1/pcr/m/n/10 fill_nodes_legacy() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (46.65079pt too wide) in paragraph at lines 313--315 \T1/ptm/m/it/10 emod_api.demographics.DemographicsInputDataParsers\T1/ptm/m/n/1 0 ), Overfull \hbox (4.62106pt too wide) in paragraph at lines 315--317 []\T1/pcr/m/n/10 finalize() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.schema_to_ class.ReadOnlyDict Overfull \hbox (36.30013pt too wide) in paragraph at lines 317--319 []\T1/pcr/m/n/10 find() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule emod_api.ser ialization.SerializedPopulation\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 319--321 []\T1/pcr/m/n/10 flattenConfig() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (81.59949pt too wide) in paragraph at lines 321--323 []\T1/pcr/m/n/10 flush() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serialization .SerializedPopulation.SerializedPopulation Underfull \hbox (badness 10000) in paragraph at lines 325--327 []\T1/pcr/m/n/10 from_csv() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 325--327 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 327--328 []\T1/pcr/m/n/10 from_csv() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 328--330 []\T1/pcr/m/n/10 from_data() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demograph ics.Node.Node Underfull \hbox (badness 10000) in paragraph at lines 330--332 []\T1/pcr/m/n/10 from_dataframe() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (17.1711pt too wide) in paragraph at lines 330--332 \T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/ptm/m/n/10 ), Overfull \hbox (16.1225pt too wide) in paragraph at lines 334--336 []\T1/pcr/m/n/10 from_demog_and_param_gravity_webservice() Overfull \hbox (122.1895pt too wide) in paragraph at lines 336--338 []\T1/pcr/m/n/10 from_dict() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demograph ics.PropertiesAndAttributes.IndividualAttributes Overfull \hbox (188.8387pt too wide) in paragraph at lines 338--340 []\T1/pcr/m/n/10 from_dict() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demograph ics.PropertiesAndAttributes.IndividualAttributes.AgeDistribution Overfull \hbox (211.16812pt too wide) in paragraph at lines 340--342 []\T1/pcr/m/n/10 from_dict() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demograph ics.PropertiesAndAttributes.IndividualAttributes.MortalityDistribution Overfull \hbox (102.18979pt too wide) in paragraph at lines 342--344 []\T1/pcr/m/n/10 from_dict() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demograph ics.PropertiesAndAttributes.NodeAttributes Underfull \hbox (badness 10000) in paragraph at lines 344--346 []\T1/pcr/m/n/10 from_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.weather.w eather.Metadata Underfull \hbox (badness 10000) in paragraph at lines 346--348 []\T1/pcr/m/n/10 from_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 346--348 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 348--350 []\T1/pcr/m/n/10 from_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (17.1711pt too wide) in paragraph at lines 348--350 \T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 350--351 []\T1/pcr/m/n/10 from_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 351--353 []\T1/pcr/m/n/10 from_params() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 351--353 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 353--354 []\T1/pcr/m/n/10 from_params() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 354--356 []\T1/pcr/m/n/10 from_pop_csv() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 354--356 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 356--358 []\T1/pcr/m/n/10 from_template_node() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 356--358 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 358--360 []\T1/pcr/m/n/10 FullRisk() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (15.62103pt too wide) in paragraph at lines 358--360 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Overfull \hbox (37.30118pt too wide) in paragraph at lines 363--365 []\T1/pcr/m/n/10 GenderDataType() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migr ation.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 365--367 []\T1/pcr/m/n/10 generate_demographics() Overfull \hbox (115.97037pt too wide) in paragraph at lines 365--367 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator.Dem ographicsGenerator Overfull \hbox (80.97084pt too wide) in paragraph at lines 367--369 []\T1/pcr/m/n/10 generate_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demog raphics.BaseInputFile.BaseInputFile Overfull \hbox (85.96114pt too wide) in paragraph at lines 369--371 []\T1/pcr/m/n/10 generate_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demog raphics.Demographics.Demographics [68] Underfull \hbox (badness 10000) in paragraph at lines 371--373 []\T1/pcr/m/n/10 generate_headers() Overfull \hbox (29.07082pt too wide) in paragraph at lines 371--373 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.BaseInputFile.BaseInputFi le Underfull \hbox (badness 10000) in paragraph at lines 373--375 []\T1/pcr/m/n/10 generate_metadata() Overfull \hbox (115.97037pt too wide) in paragraph at lines 373--375 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator.Dem ographicsGenerator Overfull \hbox (173.87039pt too wide) in paragraph at lines 375--377 []\T1/pcr/m/n/10 generate_nodes() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demo graphics.DemographicsGenerator.DemographicsGenerator Underfull \hbox (badness 10000) in paragraph at lines 378--380 []\T1/pcr/m/n/10 get_bbox() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 378--380 \T1/ptm/m/it/10 emod_api.demographics.grid_construction\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 380--382 []\T1/pcr/m/n/10 get_class_with_defaults() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in m od-ule Overfull \hbox (62.64088pt too wide) in paragraph at lines 382--384 \T1/ptm/m/it/10 mod-ule emod_api.config.default_from_schema_no_validation\T1/pt m/m/n/10 ), Overfull \hbox (45.42091pt too wide) in paragraph at lines 384--386 \T1/ptm/m/it/10 ule emod_api.config.default_from_schema_no_validation\T1/ptm/m/ n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 389--391 []\T1/pcr/m/n/10 get_fert_dist() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (15.62103pt too wide) in paragraph at lines 389--391 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 391--393 []\T1/pcr/m/n/10 get_grid_cell_id() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 391--393 \T1/ptm/m/it/10 emod_api.demographics.grid_construction\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 393--395 []\T1/pcr/m/n/10 get_next_individual_suid() Overfull \hbox (77.69946pt too wide) in paragraph at lines 393--395 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serialization.SerializedPopulation.Ser ializedPopulation Underfull \hbox (badness 10000) in paragraph at lines 395--397 []\T1/pcr/m/n/10 get_next_infection_suid() Overfull \hbox (77.69946pt too wide) in paragraph at lines 395--397 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serialization.SerializedPopulation.Ser ializedPopulation Overfull \hbox (55.96114pt too wide) in paragraph at lines 397--399 []\T1/pcr/m/n/10 get_node() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographi cs.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 399--401 []\T1/pcr/m/n/10 get_node_ids_from_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 399--401 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 401--403 []\T1/pcr/m/n/10 get_node_offsets() Underfull \hbox (badness 10000) in paragraph at lines 401--403 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 403--405 []\T1/pcr/m/n/10 get_node_pops_from_params() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 405--407 []\T1/pcr/m/n/10 get_parameters() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 405--407 \T1/ptm/m/it/10 emod_api.serialization.SerializedPopulation\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 407--408 []\T1/pcr/m/n/10 get_recv_trigger() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 409--410 []\T1/pcr/m/n/10 get_send_trigger() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 410--411 []\T1/pcr/m/n/10 get_trigger_list() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 411--413 []\T1/pcr/m/n/10 get_waning_from_params() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 413--415 []\T1/pcr/m/n/10 get_xpix_ypix() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (26.83089pt too wide) in paragraph at lines 419--421 []\T1/pcr/m/n/10 header() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channelrepor ts.channels.ChannelReport Underfull \hbox (badness 10000) in paragraph at lines 430--432 []\T1/pcr/m/n/10 id() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.spatialreports.s patial.SpatialNode Underfull \hbox (badness 7308) in paragraph at lines 432--433 []\T1/pcr/m/n/10 id() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.weather.weather. WeatherNode prop- Overfull \hbox (6.84114pt too wide) in paragraph at lines 433--435 []\T1/pcr/m/n/10 id_reference() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.weathe r.weather.Metadata Overfull \hbox (1.47115pt too wide) in paragraph at lines 435--437 []\T1/pcr/m/n/10 id_reference() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.weathe r.weather.Weather Underfull \hbox (badness 10000) in paragraph at lines 437--439 []\T1/pcr/m/n/10 IDREF_GRUMP1DEGREE Underfull \hbox (badness 10000) in paragraph at lines 437--439 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 439--441 []\T1/pcr/m/n/10 IDREF_GRUMP2PT5ARCMIN Underfull \hbox (badness 10000) in paragraph at lines 439--441 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 441--443 []\T1/pcr/m/n/10 IDREF_GRUMP30ARCSEC Underfull \hbox (badness 10000) in paragraph at lines 441--443 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.migration.Migration Overfull \hbox (13.30058pt too wide) in paragraph at lines 443--445 []\T1/pcr/m/n/10 IDREF_LEGACY \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migratio n.migration.Migration Overfull \hbox (19.30118pt too wide) in paragraph at lines 445--447 []\T1/pcr/m/n/10 IdReference() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migrati on.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 447--449 []\T1/pcr/m/n/10 IndividualAttributes \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Overfull \hbox (13.93057pt too wide) in paragraph at lines 447--449 \T1/ptm/m/it/10 emod_api.demographics.PropertiesAndAttributes\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 449--451 []\T1/pcr/m/n/10 IndividualAttributes.AgeDistribution Overfull \hbox (48.84009pt too wide) in paragraph at lines 449--451 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in emod_api.demographics.PropertiesAndAtt ributes\T1/ptm/m/n/10 ), Overfull \hbox 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lines 465--467 []\T1/pcr/m/n/10 InitPrevUniform() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (15.62103pt too wide) in paragraph at lines 465--467 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 467--469 []\T1/pcr/m/n/10 InitRiskExponential() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-u le Overfull \hbox (15.62103pt too wide) in paragraph at lines 467--469 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 469--471 []\T1/pcr/m/n/10 InitRiskLogNormal() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (15.62103pt too wide) in paragraph at lines 469--471 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 471--473 []\T1/pcr/m/n/10 InitRiskUniform() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (15.62103pt too wide) in paragraph at lines 471--473 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 473--475 []\T1/pcr/m/n/10 InitSusceptConstant() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-u le Overfull \hbox (15.62103pt too wide) in paragraph at lines 473--475 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 475--477 []\T1/pcr/m/n/10 InterpolationType() Underfull \hbox (badness 10000) in paragraph at lines 475--477 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.migration.Migration Overfull \hbox (20.8303pt too wide) in paragraph at lines 477--479 []\T1/pcr/m/n/10 interval() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.spatialrep orts.spatial.SpatialReport Overfull \hbox (13.30058pt too wide) in paragraph at lines 479--481 []\T1/pcr/m/n/10 INTERVENTION \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migratio n.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 486--488 []\T1/pcr/m/n/10 lat_lon_from_nodeid() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 489--491 []\T1/pcr/m/n/10 LINEAR_INTERPOLATION Underfull \hbox (badness 10000) in paragraph at lines 489--491 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 491--493 []\T1/pcr/m/n/10 load_default_config_as_rod() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 i n mod-ule Overfull \hbox (31.30106pt too wide) in paragraph at lines 491--493 \T1/ptm/m/it/10 emod_api.config.default_from_schema_no_validation\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 493--495 []\T1/pcr/m/n/10 LOCAL \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.migra tion.Migration Underfull \hbox (badness 10000) in paragraph at lines 496--498 []\T1/pcr/m/n/10 lon_lat_2_point() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in 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10000) in paragraph at lines 616--618 []\T1/pcr/m/n/10 node_ids() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.weather.we ather.Metadata Underfull \hbox (badness 10000) in paragraph at lines 618--619 []\T1/pcr/m/n/10 node_ids() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.weather.we ather.Weather [71] Underfull \hbox (badness 10000) in paragraph at lines 619--621 []\T1/pcr/m/n/10 NodeAttributes \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Overfull \hbox (13.93057pt too wide) in paragraph at lines 619--621 \T1/ptm/m/it/10 emod_api.demographics.PropertiesAndAttributes\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 621--623 []\T1/pcr/m/n/10 NodeCount() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration .migration.Layer Overfull \hbox (7.30118pt too wide) in paragraph at lines 623--625 []\T1/pcr/m/n/10 NodeCount() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration .migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 625--627 []\T1/pcr/m/n/10 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lines 651--653 []\T1/pcr/m/n/10 num_channels() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channe lreports.channels.Header Overfull \hbox (74.83089pt too wide) in paragraph at lines 653--655 []\T1/pcr/m/n/10 num_time_steps() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.chan nelreports.channels.ChannelReport Overfull \hbox (43.71117pt too wide) in paragraph at lines 655--657 []\T1/pcr/m/n/10 num_time_steps() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.chan nelreports.channels.Header Underfull \hbox (badness 10000) in paragraph at lines 660--662 []\T1/pcr/m/n/10 ONE_FOR_EACH_GENDER Underfull \hbox (badness 10000) in paragraph at lines 660--662 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 662--663 []\T1/pcr/m/n/10 OverlayNode \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 666--668 []\T1/pcr/m/n/10 PIECEWISE_CONSTANT Underfull \hbox (badness 10000) in paragraph at lines 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aphics.Node.Node Underfull \hbox (badness 10000) in paragraph at lines 701--703 []\T1/pcr/m/n/10 SAME_FOR_BOTH_GENDERS Underfull \hbox (badness 10000) in paragraph at lines 701--703 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 704--706 []\T1/pcr/m/n/10 ScheduledCampaignEvent() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 706--708 []\T1/pcr/m/n/10 schema_to_config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 706--708 \T1/ptm/m/it/10 emod_api.config.from_poi_and_binary\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 708--710 []\T1/pcr/m/n/10 schema_to_config_subnode() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (31.30106pt too wide) in paragraph at lines 708--710 \T1/ptm/m/it/10 emod_api.config.default_from_schema_no_validation\T1/ptm/m/n/10 ), Underfull \hbox 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graphics.DemographicsGenerator.DemographicsGenerator Underfull \hbox (badness 10000) in paragraph at lines 729--731 []\T1/pcr/m/n/10 set_risk_mod() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 729--731 \T1/ptm/m/it/10 emod_api.demographics.demographics_utils\T1/ptm/m/n/10 ), Overfull \hbox (16.62106pt too wide) in paragraph at lines 731--733 []\T1/pcr/m/n/10 set_schema() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.schema_t o_class.ReadOnlyDict Underfull \hbox (badness 10000) in paragraph at lines 734--736 []\T1/pcr/m/n/10 set_schema() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 734--736 \T1/ptm/m/it/10 emod_api.config.from_poi_and_binary\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 736--738 []\T1/pcr/m/n/10 set_static_demographics() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in m od-ule Underfull \hbox (badness 10000) in paragraph at lines 736--738 \T1/ptm/m/it/10 emod_api.demographics.demographics_utils\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 738--740 []\T1/pcr/m/n/10 SetAgeDistribution() Overfull \hbox (34.06111pt too wide) in paragraph at lines 738--740 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Overfull \hbox (79.96114pt too wide) in paragraph at lines 740--742 []\T1/pcr/m/n/10 SetBirthRate() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demogr aphics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 742--744 []\T1/pcr/m/n/10 SetConstantRisk() Overfull \hbox (34.06111pt too wide) in paragraph at lines 742--744 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 744--746 []\T1/pcr/m/n/10 SetConstantSusceptibility() Overfull \hbox (34.06111pt too wide) in paragraph at lines 744--746 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull 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emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 754--756 []\T1/pcr/m/n/10 SetDefaultProperties() Overfull \hbox (34.06111pt too wide) in paragraph at lines 754--756 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 756--758 []\T1/pcr/m/n/10 SetDefaultPropertiesFertMort() Overfull \hbox (34.06111pt too wide) in paragraph at lines 756--758 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Overfull \hbox (34.1225pt too wide) in paragraph at lines 758--760 []\T1/pcr/m/n/10 SetEquilibriumAgeDistFromBirthAndMortRates() Overfull \hbox (34.06111pt too wide) in paragraph at lines 758--760 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 760--762 []\T1/pcr/m/n/10 SetHeteroRiskExponDist() Overfull \hbox (34.06111pt too wide) in paragraph at lines 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too wide) in paragraph at lines 768--770 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 770--772 []\T1/pcr/m/n/10 SetInitialAgeLikeSubSaharanAfrica() Overfull \hbox (34.06111pt too wide) in paragraph at lines 770--772 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 772--774 []\T1/pcr/m/n/10 SetInitPrevFromUniformDraw() Overfull \hbox (34.06111pt too wide) in paragraph at lines 772--774 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 774--776 []\T1/pcr/m/n/10 SetMinimalNodeAttributes() Overfull \hbox (34.06111pt too wide) in paragraph at lines 774--776 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 776--778 []\T1/pcr/m/n/10 SetMortalityDistribution() Overfull \hbox (34.06111pt too wide) in paragraph at lines 776--778 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 778--780 []\T1/pcr/m/n/10 SetMortalityRate() Overfull \hbox (34.06111pt too wide) in paragraph at lines 778--780 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 780--782 []\T1/pcr/m/n/10 SetNodeDefaultFromTemplate() Overfull \hbox (34.06111pt too wide) in paragraph at lines 780--782 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 782--784 []\T1/pcr/m/n/10 SetOverdispersion() Overfull \hbox (34.06111pt too wide) in paragraph at lines 782--784 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 784--786 []\T1/pcr/m/n/10 SimpleSusceptibilityDistribution() \T1/ptm/m/n/10 (\T1/ptm/m/i t/10 in Overfull \hbox (46.96086pt too wide) in paragraph at lines 784--786 \T1/ptm/m/it/10 mod-ule emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/ 10 ), Overfull \hbox (34.70026pt too wide) in paragraph at lines 786--788 []\T1/pcr/m/n/10 simulation() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializ ation.dtkFileTools.DtkFileV1 Overfull \hbox (34.70026pt too wide) in paragraph at lines 788--790 []\T1/pcr/m/n/10 simulation() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializ ation.dtkFileTools.DtkFileV2 [73] Overfull \hbox (34.70026pt too wide) in paragraph at lines 790--792 []\T1/pcr/m/n/10 simulation() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializ ation.dtkFileTools.DtkFileV3 Overfull \hbox (2.94016pt too wide) in paragraph at lines 792--793 []\T1/pcr/m/n/10 Snappy \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in emod_api.seria lization.dtkFileSupport\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in 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paragraph at lines 628--628 []\T1/ptm/m/it/10 configjson_path\T1/ptm/m/n/10 , Overfull \hbox (63.52425pt too wide) in paragraph at lines 657--657 []\T1/ptm/m/it/10 start_config_dict\T1/ptm/m/n/10 , Overfull \hbox (71.87448pt too wide) in paragraph at lines 657--657 \T1/ptm/m/it/10 poi_set_param_fn\T1/pcr/m/n/10 ) Overfull \hbox (66.30441pt too wide) in paragraph at lines 666--666 []\T1/ptm/m/it/10 start_config_path\T1/ptm/m/n/10 , Overfull \hbox (71.87448pt too wide) in paragraph at lines 666--666 \T1/ptm/m/it/10 poi_set_param_fn\T1/pcr/m/n/10 ) Overfull \hbox (18.36475pt too wide) in paragraph at lines 675--675 []\T1/ptm/m/it/10 schema_path\T1/ptm/m/n/10 , Overfull \hbox (41.87448pt too wide) in paragraph at lines 675--675 \T1/ptm/m/it/10 poi_set_param_fn\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 684--684 []\T1/ptm/m/it/10 eradication_path\T1/ptm/m/n/10 , [10] Underfull \hbox (badness 10000) in paragraph at lines 732--734 []\T1/ptm/m/n/10 builder = s2c.SchemaConfigBuilder( Underfull \hbox (badness 10000) in paragraph at lines 741--741 []\T1/ptm/m/it/10 schema_name=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 schema.json\TS1 /ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 741--741 \T1/ptm/m/it/10 model=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 GENERIC_SIM\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 741--741 \T1/ptm/m/it/10 con-fig_out=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 config.json\TS1/p tm/m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (28.28418pt too wide) in paragraph at lines 752--752 []\T1/ptm/m/it/10 schema_name=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 schema.json\TS1 /ptm/m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (11.09424pt too wide) in paragraph at lines 752--752 \T1/ptm/m/it/10 model=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 GENERIC_SIM\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 752--752 \T1/ptm/m/it/10 con- Underfull \hbox (badness 10000) in paragraph at lines 752--752 \T1/ptm/m/it/10 fig_out=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 config.json\TS1/ptm/m /it/10 '\T1/ptm/m/n/10 , [11] Underfull \hbox (badness 10000) in paragraph at lines 795--795 \T1/ptm/m/it/10 name=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Erewhon\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 819--819 []\T1/ptm/m/it/10 tot_pop\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 819--819 \T1/ptm/m/it/10 num_nodes\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 828--828 []\T1/ptm/m/it/10 tot_pop=1000000\T1/ptm/m/n/10 , \T1/ptm/m/it/10 num_nodes=100 \T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 837--837 []\T1/ptm/m/it/10 input_file\T1/ptm/m/n/10 , \T1/ptm/m/it/10 res=0.008333333333 333333\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 845--845 []\T1/ptm/m/it/10 pop_filename_in\T1/ptm/m/n/10 , Overfull \hbox (28.44351pt too wide) in paragraph at lines 845--845 \T1/ptm/m/it/10 pop_filename_out=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 spatial_grid ded_pop_dir\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 851--851 []\T1/ptm/m/it/10 nodes\T1/ptm/m/n/10 , \T1/ptm/m/it/10 idref=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Gridded Underfull \hbox (badness 10000) in paragraph at lines 851--851 \T1/ptm/m/it/10 world grump2.5arcmin\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , [12] Overfull \hbox (149.53976pt too wide) in paragraph at lines 978--978 []\T1/ptm/m/it/10 distribution: [][]\T1/ptm/m/n/10 emod_api.demographics.Proper tiesAndAttributes.IndividualAttributes.MortalityDistribution[][] Overfull \hbox (94.92032pt too wide) in paragraph at lines 993--993 []\T1/ptm/m/it/10 distribution: [][]\T1/ptm/m/n/10 emod_api.demographics.Proper tiesAndAttributes.IndividualAttributes.AgeDistribution[][], [13] Underfull \hbox (badness 10000) in paragraph at lines 1064--1064 []\T1/ptm/m/it/10 CrudeBirthRate=0.04\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Crude-Mor - Underfull \hbox (badness 10000) in paragraph at lines 1153--1153 []\T1/ptm/m/it/10 file_male\T1/ptm/m/n/10 , \T1/ptm/m/it/10 file_female\T1/ptm/ m/n/10 , \T1/ptm/m/it/10 in-ter-val_fit=[1970, 1980]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1165--1165 []\T1/ptm/m/it/10 nodes=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1165--1165 \T1/ptm/m/it/10 meta_data: [][]dict[][] Overfull \hbox (7.52411pt too wide) in paragraph at lines 1165--1165 \T1/ptm/m/it/10 ual_attributes=None\T1/ptm/m/n/10 , Overfull \hbox (14.18416pt too wide) in paragraph at lines 1165--1165 \T1/ptm/m/it/10 node_attributes=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1165--1165 \T1/ptm/m/it/10 mor-tal- Overfull \hbox (16.5839pt too wide) in paragraph at lines 1165--1165 \T1/ptm/m/it/10 ity_distribution=None\T1/pcr/m/n/10 ) [14] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pcr.fd) Overfull \hbox (18.60422pt too wide) in paragraph at lines 1226--1226 []\T1/ptm/m/it/10 res_in_arcsec\T1/pcr/m/n/10 ) Overfull \hbox (13.07484pt too wide) in paragraph at lines 1245--1245 []\T1/ptm/m/it/10 nodes\T1/ptm/m/n/10 , Overfull \hbox (5.01491pt too wide) in paragraph at lines 1245--1245 \T1/ptm/m/it/10 con- Overfull \hbox (12.23463pt too wide) in paragraph at lines 1245--1245 \T1/ptm/m/it/10 cerns: Overfull \hbox (2.79494pt too wide) in paragraph at lines 1245--1245 \T1/ptm/m/it/10 Op- Overfull \hbox (457.54115pt too wide) in paragraph at lines 1245--1245 \T1/ptm/m/it/10 tional[Union[emod_api.dtk_tools.demographics.DemographicsGenera torConcern.DemographicsGeneratorConcern, Overfull \hbox (429.49101pt too wide) in paragraph at lines 1245--1245 \T1/ptm/m/it/10 List[emod_api.dtk_tools.demographics.DemographicsGeneratorConce rn.DemographicsGeneratorConcern]]] Underfull \hbox (badness 10000) in paragraph at lines 1245--1245 \T1/ptm/m/it/10 = Overfull \hbox (10.85487pt too wide) in paragraph at lines 1245--1245 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (84.4637pt too wide) in paragraph at lines 1245--1245 \T1/ptm/m/it/10 res_in_arcsec=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 custom\TS1/ptm/ m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (115.46402pt too wide) in paragraph at lines 1245--1245 \T1/ptm/m/it/10 node_id_from_lat_long=False\T1/pcr/m/n/10 ) [15] Underfull \hbox (badness 10000) in paragraph at lines 1330--1330 []\T1/ptm/m/it/10 df\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-mo-graph- Underfull \hbox (badness 10000) in paragraph at lines 1330--1330 \T1/ptm/m/it/10 ics_filename: Op- Underfull \hbox (badness 10000) in paragraph at lines 1330--1330 \T1/ptm/m/it/10 tional[[][]str[][]] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1330--1330 \T1/ptm/m/it/10 con-cerns: Op- Overfull \hbox (379.54115pt too wide) in paragraph at lines 1330--1330 \T1/ptm/m/it/10 tional[Union[emod_api.dtk_tools.demographics.DemographicsGenera torConcern.DemographicsGeneratorConcern, Overfull \hbox (351.49101pt too wide) in paragraph at lines 1330--1330 \T1/ptm/m/it/10 List[emod_api.dtk_tools.demographics.DemographicsGeneratorConce rn.DemographicsGeneratorConcern]]] Underfull \hbox (badness 10000) in paragraph at lines 1330--1330 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Overfull \hbox (6.4637pt too wide) in paragraph at lines 1330--1330 \T1/ptm/m/it/10 res_in_arcsec=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 custom\TS1/ptm/ m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (30.83415pt too wide) in paragraph at lines 1330--1330 \T1/ptm/m/it/10 node_id_from_lat_long=True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1330--1330 \T1/ptm/m/it/10 de-fault_population: Underfull \hbox (badness 10000) in paragraph at lines 1330--1330 [][]\T1/ptm/m/it/10 int[][] = 1000\T1/ptm/m/n/10 , Overfull \hbox (79.21327pt too wide) in paragraph at lines 1330--1330 \T1/ptm/m/it/10 load_other_columns_as_attributes=False\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1330--1330 \T1/ptm/m/it/10 tional[List[[][]str[][]]] Underfull \hbox (badness 10000) in paragraph at lines 1330--1330 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ex- Underfull \hbox (badness 10000) in paragraph at lines 1330--1330 \T1/ptm/m/it/10 clude_columns: Underfull \hbox (badness 10000) in paragraph at lines 1330--1330 \T1/ptm/m/it/10 Op-tional[List[[][]str[][]]] Underfull \hbox (badness 10000) in paragraph at lines 1330--1330 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Overfull \hbox (0.89452pt too wide) in paragraph at lines 1330--1330 \T1/ptm/m/it/10 nodeid_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1330--1330 \T1/ptm/m/it/10 Op-tional[[][]str[][]] Underfull \hbox (badness 10000) in paragraph at lines 1330--1330 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lat-i- Underfull \hbox (badness 10000) in paragraph at lines 1330--1330 \T1/ptm/m/it/10 tude_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1330--1330 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 lat\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lon-gi- Underfull \hbox (badness 10000) in paragraph at lines 1330--1330 \T1/ptm/m/it/10 tude_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1330--1330 \T1/ptm/m/it/10 tion_column_name: [16] Overfull \hbox (54.94496pt too wide) in paragraph at lines 1345--1346 []\T1/pcr/b/n/10 apply. If not specified, we use the DefaultWorldBankEquilibriu mConcern [17] Underfull \hbox (badness 10000) in paragraph at lines 1393--1393 []\T1/ptm/m/it/10 population_input_file: Underfull \hbox (badness 10000) in paragraph at lines 1393--1393 [][]\T1/ptm/m/it/10 str[][]\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-mo-graph- Underfull \hbox (badness 7851) in paragraph at lines 1393--1393 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 con-cerns: Op- Overfull \hbox (349.54115pt too wide) in paragraph at lines 1393--1393 \T1/ptm/m/it/10 tional[Union[emod_api.dtk_tools.demographics.DemographicsGenera torConcern.DemographicsGeneratorConcern, Overfull \hbox (321.49101pt too wide) in paragraph at lines 1393--1393 \T1/ptm/m/it/10 List[emod_api.dtk_tools.demographics.DemographicsGeneratorConce rn.DemographicsGeneratorConcern]]] Underfull \hbox (badness 10000) in paragraph at lines 1393--1393 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1393--1393 \T1/ptm/m/it/10 res_in_arcsec=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 custom\TS1/ptm/ m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (0.83415pt too wide) in paragraph at lines 1393--1393 \T1/ptm/m/it/10 node_id_from_lat_long=True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1393--1393 \T1/ptm/m/it/10 de-fault_population: Underfull \hbox (badness 10000) in paragraph at lines 1393--1393 [][]\T1/ptm/m/it/10 int[][] = 1000\T1/ptm/m/n/10 , Overfull \hbox (49.21327pt too wide) in paragraph at lines 1393--1393 \T1/ptm/m/it/10 load_other_columns_as_attributes=False\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1393--1393 \T1/ptm/m/it/10 in-clude_columns: Op- Underfull \hbox (badness 10000) in paragraph at lines 1393--1393 \T1/ptm/m/it/10 tional[List[[][]str[][]]] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1393--1393 \T1/ptm/m/it/10 ex-clude_columns: Op- Underfull \hbox (badness 10000) in paragraph at lines 1393--1393 \T1/ptm/m/it/10 tional[List[[][]str[][]]] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1393--1393 \T1/ptm/m/it/10 nodeid_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1393--1393 \T1/ptm/m/it/10 Op-tional[[][]str[][]] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1393--1393 \T1/ptm/m/it/10 lat-i-tude_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1393--1393 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 lat\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lon-gi- Underfull \hbox (badness 10000) in paragraph at lines 1393--1393 \T1/ptm/m/it/10 tude_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1393--1393 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 lon\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pop-u-la- Underfull \hbox (badness 6236) in paragraph at lines 1393--1393 \T1/ptm/m/it/10 tion_column_name: [][]str[][] = Overfull \hbox (54.94496pt too wide) in paragraph at lines 1408--1409 []\T1/pcr/b/n/10 apply. If not specified, we use the DefaultWorldBankEquilibriu mConcern [18] Overfull \hbox (6.3048pt too wide) in paragraph at lines 1464--1464 []\T1/ptm/m/it/10 lat\T1/ptm/m/n/10 , Overfull \hbox (13.5249pt too wide) in paragraph at lines 1464--1464 \T1/ptm/m/it/10 long\T1/ptm/m/n/10 , Overfull \hbox (115.34473pt too wide) in paragraph at lines 1464--1464 \T1/ptm/m/it/10 res=0.008333333333333333\T1/pcr/m/n/10 ) Overfull \hbox (37.09444pt too wide) in paragraph at lines 1470--1470 []\T1/ptm/m/it/10 nodelist\T1/pcr/m/n/10 ) Overfull \hbox (11.74474pt too wide) in paragraph at lines 1476--1476 []\T1/ptm/m/it/10 node_info\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1476--1476 \T1/ptm/m/it/10 De- Underfull \hbox (badness 10000) in paragraph at lines 1476--1476 \T1/ptm/m/it/10 moDf\T1/ptm/m/n/10 , Overfull \hbox (91.34473pt too wide) in paragraph at lines 1476--1476 \T1/ptm/m/it/10 res=0.008333333333333333\T1/pcr/m/n/10 ) Overfull \hbox (71.74474pt too wide) in paragraph at lines 1482--1482 []\T1/ptm/m/it/10 node_info\T1/ptm/m/n/10 , Overfull \hbox (41.2549pt too wide) in paragraph at lines 1482--1482 \T1/ptm/m/it/10 ex- Overfull \hbox (118.90427pt too wide) in paragraph at lines 1482--1482 \T1/ptm/m/it/10 tra_data_columns=[]\T1/ptm/m/n/10 , Overfull \hbox (151.34473pt too wide) in paragraph at lines 1482--1482 \T1/ptm/m/it/10 res=0.008333333333333333\T1/pcr/m/n/10 ) [19] Underfull \hbox (badness 10000) in paragraph at lines 1522--1524 []\T1/ptm/m/n/10 json ob-ject aka python dict that can be di-rectly passed to D e-mo-graph- Underfull \hbox (badness 10000) in paragraph at lines 1535--1535 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1535--1535 \T1/ptm/m/it/10 mean=0.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1547--1549 []\T1/ptm/m/n/10 json ob-ject aka python dict that can be di-rectly passed to D e-mo-graph- Underfull \hbox (badness 10000) in paragraph at lines 1560--1560 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1566--1568 []\T1/ptm/m/n/10 json ob-ject aka python dict that can be di-rectly passed to D e-mo-graph- Underfull \hbox (badness 10000) in paragraph at lines 1598--1598 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , \T1/ptm/m/it/10 low_prev\T1/ptm/m/n/10 , Underfull \hbox (badness 5091) in paragraph at lines 1598--1598 \T1/ptm/m/it/10 high_prev\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-scrip- Overfull \hbox (22.30493pt too wide) in paragraph at lines 1610--1610 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Overfull \hbox (7.6847pt too wide) in paragraph at lines 1610--1610 \T1/ptm/m/it/10 set- Overfull \hbox (34.0548pt too wide) in paragraph at lines 1610--1610 \T1/ptm/m/it/10 ting=1.0\T1/pcr/m/n/10 ) Overfull \hbox (10.30493pt too wide) in paragraph at lines 1616--1616 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1616--1616 \T1/ptm/m/it/10 pro- Overfull \hbox (58.54413pt too wide) in paragraph at lines 1616--1616 \T1/ptm/m/it/10 tected_setting=0.0\T1/ptm/m/n/10 , Overfull \hbox (9.20457pt too wide) in paragraph at lines 1616--1616 \T1/ptm/m/it/10 thresh- Overfull \hbox (53.51486pt too wide) in paragraph at lines 1616--1616 \T1/ptm/m/it/10 old_age=1825.0\T1/pcr/m/n/10 ) Overfull \hbox (46.30493pt too wide) in paragraph at lines 1622--1622 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Overfull \hbox (42.23488pt too wide) in paragraph at lines 1622--1622 \T1/ptm/m/it/10 mean- Overfull \hbox (44.91478pt too wide) in paragraph at lines 1622--1622 \T1/ptm/m/it/10 AgeAt- Overfull \hbox (28.90492pt too wide) in paragraph at lines 1622--1622 \T1/ptm/m/it/10 In- Overfull \hbox (32.23474pt too wide) in paragraph at lines 1622--1622 \T1/ptm/m/it/10 fec- Overfull \hbox (58.0548pt too wide) in paragraph at lines 1622--1622 \T1/ptm/m/it/10 tion=2.5\T1/pcr/m/n/10 ) [20] Overfull \hbox (55.80493pt too wide) in paragraph at lines 1628--1628 []\T1/ptm/m/it/10 demog\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1634--1634 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1634--1634 \T1/ptm/m/it/10 age_bins\T1/ptm/m/n/10 , Overfull \hbox (25.80493pt too wide) in paragraph at lines 1656--1656 []\T1/ptm/m/it/10 demog\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1674--1675 []\T1/pcr/b/n/10 "15-19", etc. up to "45-49", and a column named "Years" with Overfull \hbox (64.51184pt too wide) in paragraph at lines 1706--1706 [][]\T1/ptm/m/n/10 emod_api.demographics.PropertiesAndAttributes.IndividualAttr ibutes[][] Underfull \hbox (badness 10000) in paragraph at lines 1706--1706 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in-di-vid-ual_properties : Overfull \hbox (65.26187pt too wide) in paragraph at lines 1706--1706 [][]\T1/ptm/m/n/10 emod_api.demographics.PropertiesAndAttributes.IndividualProp erties[][] Underfull \hbox (badness 10000) in paragraph at lines 1706--1706 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 node_attributes: Overfull \hbox (45.31218pt too wide) in paragraph at lines 1706--1706 [][]\T1/ptm/m/n/10 emod_api.demographics.PropertiesAndAttributes.NodeAttributes [][] [21] Overfull \hbox (22.9045pt too wide) in paragraph at lines 1800--1800 []\T1/ptm/m/it/10 nodeid\T1/ptm/m/n/10 , \T1/ptm/m/it/10 res_in_deg=0.041666666 666666664\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1806--1806 []\T1/ptm/m/it/10 lat\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lon\T1/ptm/m/n/10 , Overfull \hbox (9.16464pt too wide) in paragraph at lines 1806--1806 \T1/ptm/m/it/10 res_in_deg=0.041666666666666664\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1812--1812 []\T1/ptm/m/it/10 lat\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lon\T1/ptm/m/n/10 , Overfull \hbox (45.7243pt too wide) in paragraph at lines 1833--1833 []\T1/ptm/m/it/10 distribution\T1/pcr/m/n/10 ) [22] Overfull \hbox (59.95372pt too wide) in paragraph at lines 1862--1862 []\T1/ptm/m/it/10 initial_distribution: Overfull \hbox (21.8143pt too wide) in paragraph at lines 1862--1862 \T1/ptm/m/it/10 List[[][]float[][]] Underfull \hbox (badness 10000) in paragraph at lines 1862--1862 \T1/ptm/m/it/10 = Overfull \hbox (4.85487pt too wide) in paragraph at lines 1862--1862 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (3.0149pt too wide) in paragraph at lines 1862--1862 \T1/ptm/m/it/10 prop- Overfull \hbox (27.15454pt too wide) in paragraph at lines 1862--1862 \T1/ptm/m/it/10 erty=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1862--1862 \T1/ptm/m/it/10 val- Underfull \hbox (badness 10000) in paragraph at lines 1862--1862 \T1/ptm/m/it/10 ues: Overfull \hbox (21.8143pt too wide) in paragraph at lines 1862--1862 \T1/ptm/m/it/10 List[[][]float[][]] Underfull \hbox (badness 10000) in paragraph at lines 1862--1862 \T1/ptm/m/it/10 = Overfull \hbox (4.85487pt too wide) in paragraph at lines 1862--1862 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (1.09485pt too wide) in paragraph at lines 1862--1862 \T1/ptm/m/it/10 tran- Underfull \hbox (badness 10000) in paragraph at lines 1862--1862 \T1/ptm/m/it/10 si- Overfull \hbox (4.02464pt too wide) in paragraph at lines 1862--1862 \T1/ptm/m/it/10 tions: Overfull \hbox (21.8143pt too wide) in paragraph at lines 1862--1862 \T1/ptm/m/it/10 List[[][]float[][]] Underfull \hbox (badness 10000) in paragraph at lines 1862--1862 \T1/ptm/m/it/10 = Overfull \hbox (4.85487pt too wide) in paragraph at lines 1862--1862 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (4.98474pt too wide) in paragraph at lines 1862--1862 \T1/ptm/m/it/10 trans- Underfull \hbox (badness 10000) in paragraph at lines 1862--1862 \T1/ptm/m/it/10 mis- Overfull \hbox (32.35434pt too wide) in paragraph at lines 1862--1862 \T1/ptm/m/it/10 sion_matrix: Overfull \hbox (21.8143pt too wide) in paragraph at lines 1862--1862 \T1/ptm/m/it/10 List[[][]float[][]] Underfull \hbox (badness 10000) in paragraph at lines 1862--1862 \T1/ptm/m/it/10 = Overfull \hbox (8.35487pt too wide) in paragraph at lines 1862--1862 \T1/ptm/m/it/10 None\T1/pcr/m/n/10 ) Overfull \hbox (76.12407pt too wide) in paragraph at lines 1876--1876 []\T1/ptm/m/it/10 individual_property: Overfull \hbox (269.15215pt too wide) in paragraph at lines 1876--1876 [][]\T1/ptm/m/n/10 emod_api.demographics.PropertiesAndAttributes.IndividualProp erty[][] Underfull \hbox (badness 10000) in paragraph at lines 1876--1876 \T1/ptm/m/it/10 = Overfull \hbox (20.35487pt too wide) in paragraph at lines 1876--1876 \T1/ptm/m/it/10 None\T1/pcr/m/n/10 ) Overfull \hbox (109.22414pt too wide) in paragraph at lines 1907--1907 []\T1/ptm/m/it/10 age_distribution_flag=None\T1/ptm/m/n/10 , Overfull \hbox (94.32413pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 age_distribution1=None\T1/ptm/m/n/10 , Overfull \hbox (94.32413pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 age_distribution2=None\T1/ptm/m/n/10 , Overfull \hbox (89.32413pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 age_distribution=None\T1/ptm/m/n/10 , Overfull \hbox (18.82483pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 preva- Overfull \hbox (116.0839pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 lence_distribution_flag=None\T1/ptm/m/n/10 , Overfull \hbox (18.82483pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 preva- Overfull \hbox (101.18388pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 lence_distribution1=None\T1/ptm/m/n/10 , Overfull \hbox (18.82483pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 preva- Overfull \hbox (101.18388pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 lence_distribution2=None\T1/ptm/m/n/10 , Overfull \hbox (6.57483pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 im- Overfull \hbox (8.79494pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 mu- Overfull \hbox (109.9839pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 nity_distribution_flag=None\T1/ptm/m/n/10 , Overfull \hbox (6.57483pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 im- Overfull \hbox (8.79494pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 mu- Overfull \hbox (95.0839pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 nity_distribution1=None\T1/ptm/m/n/10 , Overfull \hbox (6.57483pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 im- Overfull \hbox (8.79494pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 mu- Overfull \hbox (95.0839pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 nity_distribution2=None\T1/ptm/m/n/10 , Overfull \hbox (109.9838pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 risk_distribution_flag=None\T1/ptm/m/n/10 , Overfull \hbox (95.08379pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 risk_distribution1=None\T1/ptm/m/n/10 , Overfull \hbox (95.08379pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 risk_distribution2=None\T1/ptm/m/n/10 , Overfull \hbox (6.57483pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 mi- Overfull \hbox (10.31496pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 gra- Overfull \hbox (169.32329pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 tion_heterogeneity_distribution_flag=None\T1/ptm/m/n/10 , Overfull \hbox (6.57483pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 mi- Overfull \hbox (10.31496pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 gra- Overfull \hbox (154.42328pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 tion_heterogeneity_distribution1=None\T1/ptm/m/n/10 , Overfull \hbox (6.57483pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 mi- Overfull \hbox (10.31496pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 gra- Overfull \hbox (154.42328pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 tion_heterogeneity_distribution2=None\T1/ptm/m/n/10 , Overfull \hbox (12.48488pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 mor- Overfull \hbox (7.13475pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 tal- Overfull \hbox (85.0839pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 ity_distribution=None\T1/ptm/m/n/10 , Overfull \hbox (9.35475pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 sus- Overfull \hbox (10.45485pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 cep- Overfull \hbox (2.13475pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 ti- Overfull \hbox (7.13475pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 bil- Overfull \hbox (88.5839pt too wide) in paragraph at lines 1907--1907 \T1/ptm/m/it/10 ity_distribution=None\T1/pcr/m/n/10 ) [23] Underfull \hbox (badness 10000) in paragraph at lines 1912--1912 []\T1/ptm/m/it/10 distribution_values: List[[][]float[][]] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 1926--1926 []\T1/ptm/m/it/10 distribution_values=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-s ult_scale_factor=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 1946--1946 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 axis_units=None\T1/ptm/m /n/10 , \T1/ptm/m/it/10 num_distribution_axes=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1946--1946 \T1/ptm/m/it/10 pop-u-la-tion_groups=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-su lt_scale_factor=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- [24] Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 []\T1/ptm/m/it/10 airport: Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 [][]\T1/ptm/m/it/10 int[][] = Overfull \hbox (4.8247pt too wide) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 tude=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Overfull \hbox (0.98447pt too wide) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 birth_rate: Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 [][]\T1/ptm/m/it/10 float[][] = Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 coun- Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 try=None\T1/ptm/m/n/10 , Overfull \hbox (9.42453pt too wide) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 growth_rate: Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 [][]\T1/ptm/m/it/10 float[][] = Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 lat-i-tude: Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 [][]\T1/ptm/m/it/10 float[][] = Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 lon-gi-tude: Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 [][]\T1/ptm/m/it/10 float[][] = Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 meta-data: Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 [][]\T1/ptm/m/it/10 dict[][] = Overfull \hbox (22.25432pt too wide) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 tial_population: Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 [][]\T1/ptm/m/it/10 int[][] = Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 sea-port: Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 [][]\T1/ptm/m/it/10 int[][] = Overfull \hbox (50.58374pt too wide) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 val_habitat_multiplier: Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 List[[][]float[][]] Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 ini- Overfull \hbox (86.9334pt too wide) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 tial_vectors_per_species=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 in-fec-tiv- Overfull \hbox (15.02396pt too wide) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 ity_multiplier: Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 [][]\T1/ptm/m/it/10 float[][] = Overfull \hbox (15.23419pt too wide) in paragraph at lines 1981--1981 \T1/ptm/m/it/10 tra_attributes: Underfull \hbox (badness 10000) in paragraph at lines 1981--1981 [][]\T1/ptm/m/it/10 dict[][] = [25] [26] Underfull \hbox (badness 10000) in paragraph at lines 2052--2053 []\T1/pcr/b/n/10 distribution \T1/ptm/m/n/10 ^^U The se-lected dis-tri-bu-tion (need to come from Underfull \hbox (badness 10000) in paragraph at lines 2072--2072 []\T1/ptm/m/it/10 filename\T1/ptm/m/n/10 , \T1/ptm/m/it/10 dis-tri-bu-tion\T1/p tm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2073--2074 \T1/ptm/m/n/10 Set the \T1/pcr/m/n/10 ImmunityDistributionFlag\T1/ptm/m/n/10 , \T1/pcr/m/n/10 ImmunityDistribution1 \T1/ptm/m/n/10 and Underfull \hbox (badness 10000) in paragraph at lines 2100--2100 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2100--2100 \T1/ptm/m/it/10 fn\T1/ptm/m/n/10 , [27] Underfull \hbox (badness 10000) in paragraph at lines 2170--2170 []\T1/ptm/m/it/10 cb\T1/ptm/m/n/10 , Overfull \hbox (28.70406pt too wide) in paragraph at lines 2170--2170 \T1/ptm/m/it/10 use_existing=False\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 2196--2196 []\T1/ptm/m/it/10 cb\T1/ptm/m/n/10 , Overfull \hbox (34.70406pt too wide) in paragraph at lines 2196--2196 \T1/ptm/m/it/10 use_existing=False\T1/pcr/m/n/10 ) [28] Underfull \hbox (badness 10000) in paragraph at lines 2268--2268 []\T1/ptm/m/it/10 point\T1/ptm/m/n/10 , Overfull \hbox (37.41425pt too wide) in paragraph at lines 2268--2268 \T1/ptm/m/it/10 grid_id_2_cell_id\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2309--2309 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Event_Trigger\T1/ptm/m/n /10 , Overfull \hbox (73.22345pt too wide) in paragraph at lines 2309--2309 \T1/ptm/m/it/10 Node_Selection_Type=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 DISTANCE_ ONLY\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (57.50374pt too wide) in paragraph at lines 2309--2309 \T1/ptm/m/it/10 Max_Distance_To_Other_Nodes_Km=- [29] Underfull \hbox (badness 10000) in paragraph at lines 2344--2344 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 In-ter-ven- Underfull \hbox (badness 10000) in paragraph at lines 2387--2388 []\T1/pcr/b/n/10 but without the distribution, which is inferred. E.g., Underfull \hbox (badness 10000) in paragraph at lines 2408--2408 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Event_Or_Config=\TS1/ptm /m/it/10 '\T1/ptm/m/it/10 Event\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/ 10 Con-fig=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2408--2408 \T1/ptm/m/it/10 Event=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 NoTrigger\TS1/ptm/m/it/ 10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Ten-dency=1.0\T1/ptm/m/n/10 , \T1/ptm/m/it /10 Sin-gle_Use=True\T1/ptm/m/n/10 , [30] Underfull \hbox (badness 10000) in paragraph at lines 2452--2452 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Trig-gers\T1/ptm/m/n/10 , \T1/ptm/m/it/10 In-ter-ven-tions\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Prop- Underfull \hbox (badness 10000) in paragraph at lines 2452--2452 \T1/ptm/m/it/10 erty_Restrictions=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 De-mo- Underfull \hbox (badness 10000) in paragraph at lines 2452--2452 \T1/ptm/m/it/10 graphic_Coverage=1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar-get_Ag e_Min=0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar- Underfull \hbox (badness 10000) in paragraph at lines 2452--2452 \T1/ptm/m/it/10 get_Age_Max=45625\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar-get_Gende r=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 All\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/p tm/m/it/10 Tar- Underfull \hbox (badness 10000) in paragraph at lines 2452--2452 \T1/ptm/m/it/10 get_Residents_Only=False\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Durati on=- 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Black- Underfull \hbox (badness 10000) in paragraph at lines 2452--2452 \T1/ptm/m/it/10 out_Event_Trigger=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Black-ou t_Period=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2452--2452 \T1/ptm/m/it/10 Black-out_On_First_Occurrence=None\T1/ptm/m/n/10 , \T1/ptm/m/it /10 Dis-qual-i-fy- Underfull \hbox (badness 10000) in paragraph at lines 2514--2514 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar-get_Property_Key\T1/ ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2514--2514 \T1/ptm/m/it/10 Tar-get_Property_Value\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2514--2514 \T1/ptm/m/it/10 Daily_Probability=1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Max- Underfull \hbox (badness 10000) in paragraph at lines 2514--2514 \T1/ptm/m/it/10 i-mum_Duration=1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Revert=- Underfull \hbox (badness 10000) in paragraph at lines 2514--2514 \T1/ptm/m/it/10 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 In-ter-ven-tion_Name=\TS1/ptm /m/it/10 ''\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2514--2514 \T1/ptm/m/it/10 Event_Trigger_Distributed=\TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , [31] Underfull \hbox (badness 10000) in paragraph at lines 2522--2523 []\T1/pcr/b/n/10 The key part of the new key-value pair of the IP. Underfull \hbox (badness 10000) in paragraph at lines 2525--2526 []\T1/pcr/b/n/10 The value part of the new key-value pair of the IP. Underfull \hbox (badness 10000) in paragraph at lines 2531--2532 []\T1/pcr/b/n/10 The daily probability that an individual will move to the Underfull \hbox (badness 10000) in paragraph at lines 2534--2535 []\T1/pcr/b/n/10 The maximum amount of time individuals have to move Underfull \hbox (badness 10000) in paragraph at lines 2534--2535 \T1/pcr/b/n/10 to a new group. This timing works in conjunction with Underfull \hbox (badness 10000) in paragraph at lines 2537--2538 []\T1/pcr/b/n/10 The number of days before an individual moves back to their Underfull \hbox (badness 10000) in paragraph at lines 2540--2541 []\T1/pcr/b/n/10 Optional Intervention_Name. Useful if managing a replacement Underfull \hbox (badness 10000) in paragraph at lines 2543--2544 []\T1/pcr/b/n/10 Optional broadcast trigger to be published when PVC is Underfull \hbox (badness 10000) in paragraph at lines 2546--2547 []\T1/pcr/b/n/10 Optional broadcast trigger to be published when PVC is Underfull \hbox (badness 10000) in paragraph at lines 2564--2564 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Start_Day: [][]int[][]\T 1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2564--2564 \T1/ptm/m/it/10 Node_Ids=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Node- Underfull \hbox (badness 10000) in paragraph at lines 2564--2564 \T1/ptm/m/it/10 set_Config=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Num- Underfull \hbox (badness 10000) in paragraph at lines 2564--2564 \T1/ptm/m/it/10 ber_Repetitions: [][]int[][] = 1\T1/ptm/m/n/10 , Overfull \hbox (4.90335pt too wide) in paragraph at lines 2564--2564 \T1/ptm/m/it/10 Timesteps_Between_Repetitions: Underfull \hbox (badness 10000) in paragraph at lines 2564--2564 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Sched-uled_Campaign_Event\TS1/ptm/m/it/10 '\T 1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2564--2564 \T1/ptm/m/it/10 Prop-erty_Restrictions=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2564--2564 \T1/ptm/m/it/10 = 1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar-get_Age_Min=0\T1/ptm/ m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2564--2564 \T1/ptm/m/it/10 Tar-get_Age_Max=45625\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2564--2564 \T1/ptm/m/it/10 Tar-get_Residents_Only: Underfull \hbox (badness 10000) in paragraph at lines 2564--2564 [][]\T1/ptm/m/it/10 bool[][] = False\T1/ptm/m/n/10 , \T1/ptm/m/it/10 In-ter-ven - [32] Underfull \hbox (badness 10000) in paragraph at lines 2631--2631 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Start_Day: [][]int[][]\T 1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2631--2631 \T1/ptm/m/it/10 List[[][]str[][]]\T1/ptm/m/n/10 , \T1/ptm/m/it/10 In-ter-ven-ti on_List: Underfull \hbox (badness 10000) in paragraph at lines 2631--2631 \T1/ptm/m/it/10 List[[][]dict[][]]\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Node_Ids=Non e\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2631--2631 \T1/ptm/m/it/10 Node-set_Config=None\T1/ptm/m/n/10 , Overfull \hbox (17.59343pt too wide) in paragraph at lines 2631--2631 \T1/ptm/m/it/10 Node_Property_Restrictions=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2631--2631 \T1/ptm/m/it/10 Prop-erty_Restrictions=None\T1/ptm/m/n/10 , Overfull \hbox (4.90335pt too wide) in paragraph at lines 2631--2631 \T1/ptm/m/it/10 Timesteps_Between_Repetitions: Underfull \hbox (badness 10000) in paragraph at lines 2631--2631 [][]\T1/ptm/m/it/10 int[][] = - 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 De-mo- Underfull \hbox (badness 10000) in paragraph at lines 2631--2631 \T1/ptm/m/it/10 graphic_Coverage: [][]float[][] Underfull \hbox (badness 10000) in paragraph at lines 2631--2631 \T1/ptm/m/it/10 = 1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar-get_Age_Min=0\T1/ptm/ m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2631--2631 \T1/ptm/m/it/10 Tar-get_Age_Max=45625\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2631--2631 \T1/ptm/m/it/10 get_Residents_Only=False\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2631--2631 \T1/ptm/m/it/10 Duration=- 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Black- Underfull \hbox (badness 10000) in paragraph at lines 2631--2631 \T1/ptm/m/it/10 Black-out_Period=0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Black- Underfull \hbox (badness 10000) in paragraph at lines 2631--2631 \T1/ptm/m/it/10 out_On_First_Occurrence=0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2631--2631 \T1/ptm/m/it/10 Dis-qual-i-fy- Underfull \hbox (badness 10000) in paragraph at lines 2631--2631 \T1/ptm/m/it/10 ing_Properties=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 De- [33] Underfull \hbox (badness 6078) in paragraph at lines 2719--2719 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Base_Sensitivity: [][]fl oat[][] = Underfull \hbox (badness 10000) in paragraph at lines 2719--2719 \T1/ptm/m/it/10 Event_Trigger_Distributed: [][]str[][] Underfull \hbox (badness 10000) in paragraph at lines 2719--2719 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Event_Trigger_Expired: Underfull \hbox (badness 10000) in paragraph at lines 2719--2719 [][]\T1/ptm/m/it/10 str[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Pos-i- Underfull \hbox (badness 10000) in paragraph at lines 2719--2719 \T1/ptm/m/it/10 tive_Diagnosis_Intervention=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2719--2719 \T1/ptm/m/it/10 Pos-i-tive_Diagnosis_Event: Underfull \hbox (badness 10000) in paragraph at lines 2719--2719 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Pos-i-tiveRe-su lt\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Neg-a- Underfull \hbox (badness 10000) in paragraph at lines 2719--2719 \T1/ptm/m/it/10 tive_Diagnosis_Intervention=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2719--2719 \T1/ptm/m/it/10 Neg-a-tive_Diagnosis_Event: Underfull \hbox (badness 10000) in paragraph at lines 2719--2719 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Neg-a-tiveRe-su lt\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Treat- [34] Underfull \hbox (badness 10000) in paragraph at lines 2773--2773 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2773--2773 \T1/ptm/m/it/10 trig-ger\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-lay\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2773--2773 \T1/ptm/m/it/10 in-ter-ven-tion\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2773--2773 \T1/ptm/m/it/10 ip_targeting=[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2787--2788 []\T1/pcr/b/n/10 without the distribution, which is inferred. E.g., { Overfull \hbox (29.40492pt too wide) in paragraph at lines 2810--2810 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Overfull \hbox (45.52452pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 start_day\T1/ptm/m/n/10 , Overfull \hbox (23.02464pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 trig- Overfull \hbox (24.76476pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 gers\T1/ptm/m/n/10 , Overfull \hbox (16.35486pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 in- Overfull \hbox (19.48474pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 ter- Overfull \hbox (22.45485pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 ven- Overfull \hbox (23.3048pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 tion\T1/ptm/m/n/10 , Overfull \hbox (18.01491pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 de- Overfull \hbox (47.8247pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 lay=None\T1/ptm/m/n/10 , Overfull \hbox (49.62474pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 duration=- Overfull \hbox (5.24501pt too wide) in paragraph at lines 2810--2810 Overfull \hbox (12.74501pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 1\T1/ptm/m/n/10 , Overfull \hbox (84.58427pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 ip_targeting=None\T1/ptm/m/n/10 , Overfull \hbox (22.35486pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 cov- Overfull \hbox (16.70485pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 er- Overfull \hbox (41.23497pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 age=1.0\T1/ptm/m/n/10 , Overfull \hbox (20.0448pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 tar- Overfull \hbox (70.85468pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 get_age_min=0\T1/ptm/m/n/10 , Overfull \hbox (20.0448pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 tar- Overfull \hbox (92.51472pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 get_age_max=45625\T1/ptm/m/n/10 , Overfull \hbox (20.0448pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 tar- Overfull \hbox (60.13423pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 get_sex=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 All\TS1/ptm/m/it/10 ' \T1/ptm/m/n/10 , Overfull \hbox (20.0448pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 tar- Overfull \hbox (111.04373pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 get_residents_only=False\T1/ptm/m/n/10 , Overfull \hbox (30.03479pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 black- Overfull \hbox (45.61475pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 out=True\T1/ptm/m/n/10 , Overfull \hbox (107.23405pt too wide) in paragraph at lines 2810--2810 \T1/ptm/m/it/10 check_at_trigger=False\T1/pcr/m/n/10 ) [35] Underfull \hbox (badness 10000) in paragraph at lines 2830--2831 []\T1/pcr/b/n/10 without the distribution, which is inferred. E.g., { [36] Underfull \hbox (badness 10000) in paragraph at lines 2878--2878 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2878--2878 \T1/ptm/m/it/10 new_ip_key\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2878--2878 \T1/ptm/m/it/10 new_ip_value\T1/ptm/m/n/10 , Overfull \hbox (25.72469pt too wide) in paragraph at lines 2878--2878 \T1/ptm/m/it/10 change_age_in_days\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2878--2878 \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 2878--2878 \T1/ptm/m/it/10 vert_in_days\T1/ptm/m/n/10 , Overfull \hbox (8.6443pt too wide) in paragraph at lines 2878--2878 \T1/ptm/m/it/10 ip_targeting_key\T1/ptm/m/n/10 , Overfull \hbox (17.38419pt too wide) in paragraph at lines 2878--2878 \T1/ptm/m/it/10 ip_targeting_value\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2878--2878 \T1/ptm/m/it/10 cov-er- Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 trig- Overfull \hbox (7.23471pt too wide) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 new_ip_key: Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 [][]\T1/ptm/m/it/10 str[][]\T1/ptm/m/n/10 , Overfull \hbox (15.9746pt too wide) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 new_ip_value: Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 [][]\T1/ptm/m/it/10 str[][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 start_day: Underfull \hbox (badness 8019) in paragraph at lines 2919--2919 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , Overfull \hbox (4.01462pt too wide) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 daily_prob: Overfull \hbox (16.53465pt too wide) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 max_duration: Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 [][]\T1/ptm/m/it/10 int[][] = Overfull \hbox (8.43495pt too wide) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 9.3228e+35\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 re- Overfull \hbox (12.23436pt too wide) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 vert_in_days: Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 node_ids: Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (18.54387pt too wide) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 ip_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 cov-er-age: Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 [][]\T1/ptm/m/it/10 float[][] = Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar- Overfull \hbox (11.93463pt too wide) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 get_age_min: Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 [][]\T1/ptm/m/it/10 float[][] = Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar- Overfull \hbox (13.59468pt too wide) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 get_age_max: Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 [][]\T1/ptm/m/it/10 float[][] = Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 45625\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 tar- Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 get_sex: Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 [][]\T1/ptm/m/it/10 str[][] = Underfull \hbox (badness 5203) in paragraph at lines 2919--2919 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 All\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm /m/it/10 tar- Overfull \hbox (35.65398pt too wide) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 get_residents_only: Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 [][]\T1/ptm/m/it/10 bool[][] = Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 lay=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 lis-ten- Overfull \hbox (12.65463pt too wide) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 ing_duration: Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 black- Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 = True\T1/ptm/m/n/10 , Overfull \hbox (28.3443pt too wide) in paragraph at lines 2919--2919 \T1/ptm/m/it/10 check_at_trigger: Underfull \hbox (badness 10000) in paragraph at lines 2919--2919 [][]\T1/ptm/m/it/10 bool[][] = [37] [38] Underfull \hbox (badness 10000) in paragraph at lines 3008--3008 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Overfull \hbox (6.40475pt too wide) in paragraph at lines 3008--3008 \T1/ptm/m/it/10 new_ip_key\T1/ptm/m/n/10 , Overfull \hbox (15.14464pt too wide) in paragraph at lines 3008--3008 \T1/ptm/m/it/10 new_ip_value\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3008--3008 \T1/ptm/m/it/10 start_day: Underfull \hbox (badness 10000) in paragraph at lines 3008--3008 [][]\T1/ptm/m/it/10 int[][] = Underfull \hbox (badness 10000) in paragraph at lines 3008--3008 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 num- Overfull \hbox (21.31403pt too wide) in paragraph at lines 3008--3008 \T1/ptm/m/it/10 ber_repetitions: Underfull \hbox (badness 8019) in paragraph at lines 3008--3008 [][]\T1/ptm/m/it/10 int[][] = 1\T1/ptm/m/n/10 , Overfull \hbox (57.41364pt too wide) in paragraph at lines 3008--3008 \T1/ptm/m/it/10 timesteps_between_reps: Underfull \hbox (badness 10000) in paragraph at lines 3008--3008 \T1/ptm/m/it/10 node_ids: Underfull \hbox (badness 10000) in paragraph at lines 3008--3008 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 3008--3008 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (4.01462pt too wide) in paragraph at lines 3008--3008 \T1/ptm/m/it/10 daily_prob: Overfull \hbox (16.53465pt too wide) in paragraph at lines 3008--3008 \T1/ptm/m/it/10 max_duration: Underfull \hbox (badness 10000) in paragraph at lines 3008--3008 [][]\T1/ptm/m/it/10 int[][] = Overfull \hbox (8.43495pt too wide) in paragraph at lines 3008--3008 \T1/ptm/m/it/10 9.3228e+35\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3008--3008 \T1/ptm/m/it/10 re- Overfull \hbox (12.23436pt too wide) in paragraph at lines 3008--3008 \T1/ptm/m/it/10 vert_in_days: Overfull \hbox (18.54387pt too wide) in paragraph at lines 3008--3008 \T1/ptm/m/it/10 ip_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 3008--3008 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 3008--3008 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3008--3008 \T1/ptm/m/it/10 cov-er-age: Underfull \hbox (badness 10000) in paragraph at lines 3008--3008 [][]\T1/ptm/m/it/10 float[][] = Underfull \hbox (badness 10000) in paragraph at lines 3008--3008 \T1/ptm/m/it/10 1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar- Overfull \hbox (11.93463pt too wide) in paragraph at lines 3008--3008 \T1/ptm/m/it/10 get_age_min: Underfull \hbox (badness 10000) in paragraph at lines 3008--3008 [][]\T1/ptm/m/it/10 float[][] = Underfull \hbox (badness 10000) in paragraph at lines 3008--3008 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar- Overfull \hbox (13.59468pt too wide) in paragraph at lines 3008--3008 \T1/ptm/m/it/10 get_age_max: Underfull \hbox (badness 10000) in paragraph at lines 3008--3008 [][]\T1/ptm/m/it/10 float[][] = Underfull \hbox (badness 10000) in paragraph at lines 3008--3008 \T1/ptm/m/it/10 45625\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3008--3008 \T1/ptm/m/it/10 tar- Underfull \hbox (badness 10000) in paragraph at lines 3008--3008 \T1/ptm/m/it/10 get_sex: Underfull \hbox (badness 10000) in paragraph at lines 3008--3008 [][]\T1/ptm/m/it/10 str[][] = Underfull \hbox (badness 5203) in paragraph at lines 3008--3008 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 All\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm /m/it/10 tar- Overfull \hbox (35.65398pt too wide) in paragraph at lines 3008--3008 \T1/ptm/m/it/10 get_residents_only: Underfull \hbox (badness 10000) in paragraph at lines 3008--3008 [][]\T1/ptm/m/it/10 bool[][] = [39] [40] Underfull \hbox (badness 10000) in paragraph at lines 3077--3077 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar- Underfull \hbox (badness 10000) in paragraph at lines 3077--3077 \T1/ptm/m/it/10 tar-get_property_value: Underfull \hbox (badness 10000) in paragraph at lines 3077--3077 [][]\T1/ptm/m/it/10 str[][]\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day: Underfull \hbox (badness 10000) in paragraph at lines 3077--3077 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 num- Underfull \hbox (badness 10000) in paragraph at lines 3077--3077 \T1/ptm/m/it/10 timesteps_between_reps: Underfull \hbox (badness 5878) in paragraph at lines 3077--3077 \T1/ptm/m/it/10 = 9.3228e+35\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-vert: Underfull \hbox (badness 10000) in paragraph at lines 3077--3077 \T1/ptm/m/it/10 = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ip_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 3077--3077 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar- Underfull \hbox (badness 6316) in paragraph at lines 3077--3077 \T1/ptm/m/it/10 get_age_min: [][]float[][] = Underfull \hbox (badness 10000) in paragraph at lines 3077--3077 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar-get_age_max: Underfull \hbox (badness 10000) in paragraph at lines 3077--3077 [][]\T1/ptm/m/it/10 float[][] = 45625\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar- Underfull \hbox (badness 8000) in paragraph at lines 3077--3077 \T1/ptm/m/it/10 get_sex: [][]str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 All\TS 1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3077--3077 \T1/ptm/m/it/10 tar-get_residents_only: Underfull \hbox (badness 10000) in paragraph at lines 3077--3077 [][]\T1/ptm/m/it/10 bool[][] = False\T1/ptm/m/n/10 , \T1/ptm/m/it/10 trig- Underfull \hbox (badness 10000) in paragraph at lines 3077--3077 \T1/ptm/m/it/10 ger_condition_list: Underfull \hbox (badness 10000) in paragraph at lines 3077--3077 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 trig- Underfull \hbox (badness 10000) in paragraph at lines 3077--3077 \T1/ptm/m/it/10 gered_campaign_delay: Underfull \hbox (badness 10000) in paragraph at lines 3077--3077 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lis-ten- Underfull \hbox (badness 10000) in paragraph at lines 3077--3077 \T1/ptm/m/it/10 ing_duration: [][]int[][] Underfull \hbox (badness 10000) in paragraph at lines 3077--3077 \T1/ptm/m/it/10 = - 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 black- Overfull \hbox (11.68343pt too wide) in paragraph at lines 3077--3077 \T1/ptm/m/it/10 check_eligibility_at_trigger: [41] [42] Underfull \hbox (badness 10000) in paragraph at lines 3196--3196 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 nodeto\T1/ptm/m/n/10 , \ T1/ptm/m/it/10 start_day: Underfull \hbox (badness 8056) in paragraph at lines 3196--3196 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age: [][ ]float[][] Underfull \hbox (badness 7851) in paragraph at lines 3196--3196 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar-get_age: [][]dict[][ ] Underfull \hbox (badness 10000) in paragraph at lines 3196--3196 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 nodes_from_ids: Underfull \hbox (badness 10000) in paragraph at lines 3196--3196 \T1/ptm/m/it/10 List[[][]int[][]] = None\T1/ptm/m/n/10 , Overfull \hbox (5.56337pt too wide) in paragraph at lines 3196--3196 \T1/ptm/m/it/10 ind_property_restrictions=None\T1/ptm/m/n/10 , Overfull \hbox (12.22342pt too wide) in paragraph at lines 3196--3196 \T1/ptm/m/it/10 node_property_restrictions=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3196--3196 \T1/ptm/m/it/10 trig-gered_campaign_delay=0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3196--3196 \T1/ptm/m/it/10 trig-ger_condition_list=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3225--3229 []\T1/ptm/m/n/10 {^^PDuration_Before_Leaving_Distribution^^Q:^^QGAUSSIAN_DISTRI BUTION^^Q, Underfull \hbox (badness 10000) in paragraph at lines 3225--3229 \T1/ptm/m/n/10 ^^PDu-ra-tion_Before_Leaving_Gaussian_Mean^^Q: 14, ^^PDu- Underfull \hbox (badness 10000) in paragraph at lines 3225--3229 \T1/ptm/m/n/10 ra-tion_Before_Leaving_Gaussian_Std_Dev^^Q 3} {^^PDu-ra- Underfull \hbox (badness 10000) in paragraph at lines 3225--3229 \T1/ptm/m/n/10 tion_Before_Leaving_Distribution^^Q:^^QPOISSON_DISTRIBUTION^^Q, ^^PDu-ra- Underfull \hbox (badness 10000) in paragraph at lines 3238--3241 []\T1/ptm/m/n/10 {^^PDuration_At_Node_Distribution^^Q:^^QGAUSSIAN_DISTRIBUTION^ ^Q, ^^PDu-ra- Underfull \hbox (badness 10000) in paragraph at lines 3238--3241 \T1/ptm/m/n/10 tion_At_Node_Gaussian_Mean^^Q: 14, ^^PDu-ra-tion_At_Node_Gaussia n_Std_Dev^^Q Underfull \hbox (badness 10000) in paragraph at lines 3238--3241 \T1/ptm/m/n/10 3} {^^PDu-ra-tion_At_Node_Distribution^^Q:^^QPOISSON_DISTRIBUTIO N^^Q, ^^PDu-ra- [43] Overfull \hbox (19.69089pt too wide) in paragraph at lines 3285--3289 \T1/ptm/m/n/10 from emod_api im-port cam-paign as camp dan = {^^PDu-ra-tion_At_ Node_Distribution^^Q:^^QPOISSON_DISTRIBUTION^^Q, Overfull \hbox (57.24088pt too wide) in paragraph at lines 3285--3289 \T1/ptm/m/n/10 ^^PDu-ra-tion_At_Node_Poisson_Mean^^Q 30} dbl = {^^PDu-ra-tion_B efore_Leaving_Distribution^^Q:^^QGAUSSIAN_DISTRIBUTION^^Q, Underfull \hbox (badness 10000) in paragraph at lines 3290--3295 [] Underfull \hbox (badness 10000) in paragraph at lines 3306--3306 \T1/ptm/m/it/10 pro-file=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 CONST\TS1/ptm/m/it/1 0 '\T1/ptm/m/n/10 , ! LaTeX Error: Too deeply nested. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.3315 ...{CONST(ANT)}] \leavevmode\begin{itemize} [44] Underfull \hbox (badness 10000) in paragraph at lines 3377--3377 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day=1\T1/ptm/m/n/1 0 , Underfull \hbox (badness 10000) in paragraph at lines 3377--3377 \T1/ptm/m/it/10 new_infectivity=1.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3377--3377 \T1/ptm/m/it/10 pro-file=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 CONST\TS1/ptm/m/it/1 0 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3377--3377 \T1/ptm/m/it/10 node_ids=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3377--3377 \T1/ptm/m/it/10 re-cur-ring=True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3385--3385 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3396--3396 \T1/ptm/m/it/10 age=0.01\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ig-nore_immunity=None\ T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3405--3405 []\T1/ptm/m/it/10 campaign_builder\T1/ptm/m/n/10 , \T1/ptm/m/it/10 timestep\T1/ ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3439--3439 \T1/ptm/m/it/10 ef-fi-cacy=1.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3439--3439 \T1/ptm/m/it/10 sv_name=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Vaccine\TS1/ptm/m/it/ 10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3439--3439 \T1/ptm/m/it/10 wan-ing_duration=100\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3439--3439 \T1/ptm/m/it/10 d_a_d=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3439--3439 \T1/ptm/m/it/10 cost_to_consumer=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3439--3439 \T1/ptm/m/it/10 e_i_r=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in-ter-ven- [45] Underfull \hbox (badness 10000) in paragraph at lines 3460--3460 []\T1/ptm/m/it/10 timestep\T1/ptm/m/n/10 , \T1/ptm/m/it/10 file- Underfull \hbox (badness 10000) in paragraph at lines 3477--3477 []\T1/ptm/m/it/10 schema_path\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ini-tial=1.0\T1/p tm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3477--3477 \T1/ptm/m/it/10 box_duration=365\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3477--3477 \T1/ptm/m/it/10 de-cay_rate=0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de- [46] Underfull \hbox (badness 5548) in paragraph at lines 3606--3609 []\T1/ptm/m/n/10 EMOD/DTK for-mat mi-gra-tion files (and as-so-ci-ated meta-dat a files) can be writ-ten with mi-gra- [47] [48] Underfull \hbox (badness 10000) in paragraph at lines 3872--3872 \T1/ptm/m/it/10 num_nodes=100\T1/ptm/m/n/10 , \T1/ptm/m/it/10 mig_factor=1.0\T1 /ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3872--3872 \T1/ptm/m/it/10 frac_rural=0.3\T1/ptm/m/n/10 , \T1/ptm/m/it/10 id_ref=\TS1/ptm/ m/it/10 '\T1/ptm/m/it/10 from_params\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm/ m/it/10 mi- Overfull \hbox (68.98433pt too wide) in paragraph at lines 3883--3883 []\T1/ptm/m/it/10 demographics_file_path: Underfull \hbox (badness 10000) in paragraph at lines 3883--3883 [][]\T1/ptm/m/it/10 str[][]\T1/ptm/m/n/10 , Overfull \hbox (2.42482pt too wide) in paragraph at lines 3883--3883 \T1/ptm/m/it/10 params: Underfull \hbox (badness 10000) in paragraph at lines 3883--3883 [][]\T1/ptm/m/it/10 str[][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3883--3883 \T1/ptm/m/it/10 id_ref: Underfull \hbox (badness 10000) in paragraph at lines 3883--3883 [][]\T1/ptm/m/it/10 str[][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3883--3883 \T1/ptm/m/it/10 mi-gra- Overfull \hbox (24.21457pt too wide) in paragraph at lines 3883--3883 \T1/ptm/m/it/10 tion_type=1\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 3883--3883 \OMS/cmsy/m/n/10 !$ Overfull \hbox (135.19371pt too wide) in paragraph at lines 3883--3883 [][]\T1/ptm/m/it/10 emod_api.migration.migration.Migration[][] Overfull \hbox (2.15437pt too wide) in paragraph at lines 3911--3911 []\T1/ptm/m/it/10 demographics_file_path\T1/ptm/m/n/10 , [49] Overfull \hbox (24.70302pt too wide) in paragraph at lines 3965--3965 []\T1/ptm/m/it/10 path_to_binary\T1/ptm/m/n/10 , \T1/ptm/m/it/10 path_to_write_ schema=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 schema.json\TS1/ptm/m/it/10 '\T1/pcr/m /n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 3986--3986 []\T1/ptm/m/it/10 input_serpop_path\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3986--3986 \T1/ptm/m/it/10 mod_fn=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4007--4007 []\T1/ptm/m/it/10 file: [50] [51] Underfull \hbox (badness 10000) in paragraph at lines 4133--4133 []\T1/ptm/m/it/10 name: [][]str[][]\T1/ptm/m/n/10 , \T1/ptm/m/it/10 han-dle\T1/ ptm/m/n/10 , \T1/ptm/m/it/10 cur- Underfull \hbox (badness 10000) in paragraph at lines 4168--4168 []\T1/ptm/m/it/10 handle\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cur- [52] Underfull \hbox (badness 6493) in paragraph at lines 4297--4297 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 byte-count\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 : 0, \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 chunkcount\TS1/ptm/m/it/10 '\T1/ptm/m/it/ 10 : Underfull \hbox (badness 10000) in paragraph at lines 4297--4297 \T1/ptm/m/it/10 0, \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 chunk-sizes\TS1/ptm/m/it/1 0 '\T1/ptm/m/it/10 : [], \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 com- Underfull \hbox (badness 6575) in paragraph at lines 4297--4297 \T1/ptm/m/it/10 22 20:30:21 2022\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 , \TS1/ptm/m/ it/10 '\T1/ptm/m/it/10 en-gine\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 : [53] [54] Underfull \hbox (badness 10000) in paragraph at lines 4531--4531 \T1/ptm/m/it/10 List[[][]int[][]] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 data: Underfull \hbox (badness 10000) in paragraph at lines 4531--4531 \T1/ptm/m/it/10 numpy.array = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start: [55] [56] [57] [58] [59] [60] Chapter 4. [61] [62] Overfull \hbox (66.6225pt too wide) in paragraph at lines 5070--5071 []\T1/pcr/m/n/10 emod_api.config.default_from_schema_no_validation\T1/ptm/m/n/1 0 , Overfull \hbox (36.6225pt too wide) in paragraph at lines 5071--5072 []\T1/pcr/m/n/10 emod_api.config.dtk_post_process_adhocevents\T1/ptm/m/n/10 , Overfull \hbox (30.6225pt too wide) in paragraph at lines 5072--5073 []\T1/pcr/m/n/10 emod_api.config.dtk_pre_process_adhocevents\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 5073--5074 []\T1/pcr/m/n/10 emod_api.config.dtk_pre_process_w5ml\T1/ptm/m/n/10 , Overfull \hbox (12.6225pt too wide) in paragraph at lines 5081--5082 []\T1/pcr/m/n/10 emod_api.demographics.demographics_utils\T1/ptm/m/n/10 , Overfull \hbox (30.6225pt too wide) in paragraph at lines 5082--5083 []\T1/pcr/m/n/10 emod_api.demographics.DemographicsGenerator\T1/ptm/m/n/10 , Overfull \hbox (72.6225pt too wide) in paragraph at lines 5083--5084 []\T1/pcr/m/n/10 emod_api.demographics.DemographicsInputDataParsers\T1/ptm/m/n/ 10 , Overfull \hbox (30.6225pt too wide) in paragraph at lines 5084--5085 []\T1/pcr/m/n/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 , Overfull \hbox (6.6225pt too wide) in paragraph at lines 5085--5086 []\T1/pcr/m/n/10 emod_api.demographics.grid_construction\T1/ptm/m/n/10 , Overfull \hbox (42.6225pt too wide) in paragraph at lines 5087--5088 []\T1/pcr/m/n/10 emod_api.demographics.PreDefinedDistributions\T1/ptm/m/n/10 , Overfull \hbox (42.6225pt too wide) in paragraph at lines 5088--5089 []\T1/pcr/m/n/10 emod_api.demographics.PropertiesAndAttributes\T1/ptm/m/n/10 , Overfull \hbox (0.6225pt too wide) in paragraph at lines 5092--5093 []\T1/pcr/m/n/10 emod_api.interventions.import_pressure\T1/ptm/m/n/10 , Overfull \hbox (0.6225pt too wide) in paragraph at lines 5094--5095 []\T1/pcr/m/n/10 emod_api.interventions.node_multiplier\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 5096--5097 []\T1/pcr/m/n/10 emod_api.interventions.simple_vaccine\T1/ptm/m/n/10 , Overfull \hbox (6.6225pt too wide) in paragraph at lines 5103--5104 []\T1/pcr/m/n/10 emod_api.schema.dtk_post_process_schema\T1/ptm/m/n/10 , Overfull \hbox (0.6225pt too wide) in paragraph at lines 5107--5108 []\T1/pcr/m/n/10 emod_api.serialization.CensusAndModPop\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 5108--5109 []\T1/pcr/m/n/10 emod_api.serialization.dtkFileSupport\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 5110--5111 []\T1/pcr/m/n/10 emod_api.serialization.dtkFileUtility\T1/ptm/m/n/10 , Overfull \hbox (30.6225pt too wide) in paragraph at lines 5111--5112 []\T1/pcr/m/n/10 emod_api.serialization.SerializedPopulation\T1/ptm/m/n/10 , [63] (./institute-for-disease-modeling-emod-api.ind [64] Overfull \hbox (88.70953pt too wide) in paragraph at lines 8--10 []\T1/pcr/m/n/10 add() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Pr opertiesAndAttributes.IndividualProperties Underfull \hbox (badness 10000) in paragraph at lines 11--13 []\T1/pcr/m/n/10 add_migration_event() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-u le Overfull \hbox (148.70953pt too wide) in paragraph at lines 13--15 []\T1/pcr/m/n/10 add_parameter() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demog raphics.PropertiesAndAttributes.IndividualProperties Overfull \hbox (61.87129pt too wide) in paragraph at lines 15--17 []\T1/pcr/m/n/10 add_parameter() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demog raphics.Updateable.Updateable Underfull \hbox (badness 10000) in paragraph at lines 17--19 []\T1/pcr/m/n/10 AddAgeDependentTransmission() Overfull \hbox (34.06111pt too wide) in paragraph at lines 17--19 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 19--21 []\T1/pcr/m/n/10 AddIndividualPropertyAndHINT() Overfull \hbox (34.06111pt too wide) in paragraph at lines 19--21 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 21--23 []\T1/pcr/m/n/10 AgeStructureUNWPP() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (15.62103pt too wide) in paragraph at lines 21--23 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Overfull \hbox (7.30118pt too wide) in paragraph at lines 23--25 []\T1/pcr/m/n/10 AgesYears() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration .migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 25--26 []\T1/pcr/m/n/10 AIR \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.migrati on.Migration at- Overfull \hbox (37.49991pt too wide) in paragraph at lines 26--28 []\T1/pcr/m/n/10 append() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializatio n.dtkFileTools.DtkFile.Contents Overfull \hbox (32.4899pt too wide) in paragraph at lines 28--30 []\T1/pcr/m/n/10 append() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializatio n.dtkFileTools.DtkFile.Objects Underfull \hbox (badness 10000) in paragraph at lines 30--32 []\T1/pcr/m/n/10 application() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (7.95116pt too wide) in paragraph at lines 30--32 \T1/ptm/m/it/10 emod_api.config.dtk_post_process_adhocevents\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 32--34 []\T1/pcr/m/n/10 application() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (4.2412pt too wide) in paragraph at lines 32--34 \T1/ptm/m/it/10 emod_api.config.dtk_pre_process_adhocevents\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 34--36 []\T1/pcr/m/n/10 application() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 34--36 \T1/ptm/m/it/10 emod_api.config.dtk_pre_process_w5ml\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 36--38 []\T1/pcr/m/n/10 application() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 36--38 \T1/ptm/m/it/10 emod_api.schema.dtk_post_process_schema\T1/ptm/m/n/10 ), Overfull \hbox (85.96114pt too wide) in paragraph at lines 38--40 []\T1/pcr/m/n/10 apply_overlay() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demog raphics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 40--42 []\T1/pcr/m/n/10 apply_to_defaults_or_nodes() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 i n mod-ule Underfull \hbox (badness 10000) in paragraph at lines 40--42 \T1/ptm/m/it/10 emod_api.demographics.demographics_utils\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 42--44 []\T1/pcr/m/n/10 arcsec_to_deg() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (17.1711pt too wide) in paragraph at lines 42--44 \T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/ptm/m/n/10 ), Overfull \hbox (62.83089pt too wide) in paragraph at lines 44--46 []\T1/pcr/m/n/10 as_dataframe() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channe lreports.channels.ChannelReport Overfull \hbox (41.61118pt too wide) in paragraph at lines 46--48 []\T1/pcr/m/n/10 as_dictionary() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.chann elreports.channels.Channel Overfull \hbox (37.71117pt too wide) in paragraph at lines 48--50 []\T1/pcr/m/n/10 as_dictionary() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.chann elreports.channels.Header Underfull \hbox (badness 10000) in paragraph at lines 52--54 []\T1/pcr/m/n/10 Author() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.mi gration.Migration Underfull \hbox (badness 10000) in paragraph at lines 61--63 []\T1/pcr/m/n/10 BaseInputFile \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 61--63 \T1/ptm/m/it/10 emod_api.demographics.BaseInputFile\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 63--64 []\T1/pcr/m/n/10 basicNode() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 64--66 []\T1/pcr/m/n/10 birth_rate() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demograp hics.Node.Node Underfull \hbox (badness 10000) in paragraph at lines 66--68 []\T1/pcr/m/n/10 BroadcastEvent() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 68--70 []\T1/pcr/m/n/10 BroadcastEventToOtherNodes() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 i n mod-ule Overfull \hbox (23.59027pt too wide) in paragraph at lines 71--73 []\T1/pcr/m/n/10 byte_count() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializ ation.dtkFileTools.DtkFile Underfull \hbox (badness 10000) in paragraph at lines 76--78 []\T1/pcr/m/n/10 change_individual_property() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 i n mod-ule Underfull \hbox (badness 7291) in paragraph at lines 78--80 []\T1/pcr/m/n/10 change_individual_property_at_age() \T1/ptm/m/n/10 (\T1/ptm/m/ it/10 in [65] Underfull \hbox (badness 10000) in paragraph at lines 80--82 []\T1/pcr/m/n/10 change_individual_property_scheduled() Underfull \hbox (badness 10000) in paragraph at lines 82--84 []\T1/pcr/m/n/10 change_individual_property_triggered() Underfull \hbox (badness 10000) in paragraph at lines 84--86 []\T1/pcr/m/n/10 change_ser_pop() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 84--86 \T1/ptm/m/it/10 emod_api.serialization.CensusAndModPop\T1/ptm/m/n/10 ), Overfull \hbox (68.83089pt too wide) in paragraph at lines 87--89 []\T1/pcr/m/n/10 channel_names() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.chann elreports.channels.ChannelReport Underfull \hbox (badness 10000) in paragraph at lines 89--91 []\T1/pcr/m/n/10 ChannelReport \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Overfull \hbox (38.83089pt too wide) in paragraph at lines 91--93 []\T1/pcr/m/n/10 channels() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channelrep orts.channels.ChannelReport Overfull \hbox (29.59027pt too wide) in paragraph at lines 93--95 []\T1/pcr/m/n/10 chunk_count() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.seriali zation.dtkFileTools.DtkFile Overfull \hbox (29.59027pt too wide) in paragraph at lines 95--97 []\T1/pcr/m/n/10 chunk_sizes() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.seriali zation.dtkFileTools.DtkFile Overfull \hbox (36.91025pt too wide) in paragraph at lines 99--101 []\T1/pcr/m/n/10 compress() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializat ion.dtkFileSupport.EllZeeFour Overfull \hbox (21.29066pt too wide) in paragraph at lines 101--103 []\T1/pcr/m/n/10 compress() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializat ion.dtkFileSupport.Snappy Overfull \hbox (50.91016pt too wide) in paragraph at lines 103--105 []\T1/pcr/m/n/10 compress() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializat ion.dtkFileSupport.Uncompressed Underfull \hbox (badness 10000) in paragraph at lines 105--107 []\T1/pcr/m/n/10 compress() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (23.59027pt too wide) in paragraph at lines 107--109 []\T1/pcr/m/n/10 compressed() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializ ation.dtkFileTools.DtkFile Overfull \hbox (29.59027pt too wide) in paragraph at lines 109--111 []\T1/pcr/m/n/10 compression() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.seriali zation.dtkFileTools.DtkFile Underfull \hbox (badness 10000) in paragraph at lines 111--113 []\T1/pcr/m/n/10 ConstantDistribution \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Overfull \hbox (14.56071pt too wide) in paragraph at lines 111--113 \T1/ptm/m/it/10 emod_api.demographics.PreDefinedDistributions\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 113--115 []\T1/pcr/m/n/10 construct() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 113--115 \T1/ptm/m/it/10 emod_api.demographics.grid_construction\T1/ptm/m/n/10 ), Overfull \hbox (46.65079pt too wide) in paragraph at lines 115--117 \T1/ptm/m/it/10 emod_api.demographics.DemographicsInputDataParsers\T1/ptm/m/n/1 0 ), Overfull \hbox (97.2796pt too wide) in paragraph at lines 117--119 []\T1/pcr/m/n/10 copy() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.P reDefinedDistributions.ConstantDistribution Overfull \hbox (12.84114pt too wide) in paragraph at lines 119--121 []\T1/pcr/m/n/10 creation_date() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.weath er.weather.Metadata Overfull \hbox (7.47115pt too wide) in paragraph at lines 121--123 []\T1/pcr/m/n/10 creation_date() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.weath er.weather.Weather Underfull \hbox (badness 10000) in paragraph at lines 126--128 []\T1/pcr/m/n/10 data() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channelreports .channels.Channel Underfull \hbox (badness 10000) in paragraph at lines 128--130 []\T1/pcr/m/n/10 data() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.spatialreports .spatial.SpatialNode Underfull \hbox (badness 10000) in paragraph at lines 134--136 []\T1/pcr/m/n/10 datavalue_count() Underfull \hbox (badness 10000) in paragraph at lines 134--136 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.weather.weather.Metadata prop- Underfull \hbox (badness 10000) in paragraph at lines 136--138 []\T1/pcr/m/n/10 datavalue_count() Underfull \hbox (badness 10000) in paragraph at lines 136--138 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.weather.weather.Weather prop- Overfull \hbox (20.22127pt too wide) in paragraph at lines 138--140 []\T1/pcr/m/n/10 DatavalueCount() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migr ation.migration.Layer Overfull \hbox (37.30118pt too wide) in paragraph at lines 140--142 []\T1/pcr/m/n/10 DatavalueCount() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migr ation.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 142--144 []\T1/pcr/m/n/10 date() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serialization. dtkFileTools.DtkFile Overfull \hbox (19.30118pt too wide) in paragraph at lines 144--146 []\T1/pcr/m/n/10 DateCreated() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migrati on.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 146--148 []\T1/pcr/m/n/10 default_population Underfull \hbox (badness 10000) in paragraph at lines 146--148 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Node.Node at- Underfull \hbox (badness 7291) in paragraph at lines 148--150 []\T1/pcr/m/n/10 DefaultSusceptibilityDistribution() \T1/ptm/m/n/10 (\T1/ptm/m/ it/10 in Overfull \hbox (46.96086pt too wide) in paragraph at lines 148--150 \T1/ptm/m/it/10 mod-ule emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/ 10 ), Underfull \hbox (badness 10000) in paragraph at lines 150--152 []\T1/pcr/m/n/10 DelayedIntervention() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 152--154 []\T1/pcr/m/n/10 Demographics \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 152--154 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 154--156 []\T1/pcr/m/n/10 DemographicsGenerator \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Overfull \hbox (17.1711pt too wide) in paragraph at lines 154--156 \T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 156--158 []\T1/pcr/m/n/10 DemographicsOverlay \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 156--158 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 158--160 []\T1/pcr/m/n/10 DemographicsType \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Overfull \hbox (17.1711pt too wide) in paragraph at lines 158--160 \T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 160--162 []\T1/pcr/m/n/10 do_mapping_from_events() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule Overfull \hbox (4.2412pt too wide) in paragraph at lines 160--162 \T1/ptm/m/it/10 emod_api.config.dtk_pre_process_adhocevents\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 163--165 []\T1/pcr/m/n/10 dtk_to_schema() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (56.83089pt too wide) in paragraph at lines 165--167 []\T1/pcr/m/n/10 dtk_version() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channel reports.channels.ChannelReport Overfull \hbox (25.71117pt too wide) in paragraph at lines 167--169 []\T1/pcr/m/n/10 dtk_version() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channel reports.channels.Header [66] Underfull \hbox (badness 10000) in paragraph at lines 170--172 []\T1/pcr/m/n/10 DtkFile.Contents \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 172--174 []\T1/pcr/m/n/10 DtkFile.Objects \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 174--176 []\T1/pcr/m/n/10 DtkFileV1 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 176--178 []\T1/pcr/m/n/10 DtkFileV2 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 178--180 []\T1/pcr/m/n/10 DtkFileV2.NodesV2 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 180--182 []\T1/pcr/m/n/10 DtkFileV3 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 182--184 []\T1/pcr/m/n/10 DtkFileV3.NodesV3 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 184--186 []\T1/pcr/m/n/10 DtkFileV4 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 186--188 []\T1/pcr/m/n/10 DtkHeader \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 188--190 []\T1/pcr/m/n/10 duplicate_nodeID_check() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule Overfull \hbox (46.65079pt too wide) in paragraph at lines 188--190 \T1/ptm/m/it/10 emod_api.demographics.DemographicsInputDataParsers\T1/ptm/m/n/1 0 ), Underfull \hbox (badness 10000) in paragraph at lines 193--195 []\T1/pcr/m/n/10 EllZeeFour \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Overfull \hbox (64.1225pt too wide) in paragraph at lines 207--208 []\T1/pcr/m/n/10 emod_api.config.default_from_schema_no_validation Overfull \hbox (34.1225pt too wide) in paragraph at lines 209--210 []\T1/pcr/m/n/10 emod_api.config.dtk_post_process_adhocevents Overfull \hbox (28.1225pt too wide) in paragraph at lines 211--212 []\T1/pcr/m/n/10 emod_api.config.dtk_pre_process_adhocevents Overfull \hbox (10.1225pt too wide) in paragraph at lines 229--230 []\T1/pcr/m/n/10 emod_api.demographics.demographics_utils Overfull \hbox (28.1225pt too wide) in paragraph at lines 231--232 []\T1/pcr/m/n/10 emod_api.demographics.DemographicsGenerator Overfull \hbox (70.1225pt too wide) in paragraph at lines 233--234 []\T1/pcr/m/n/10 emod_api.demographics.DemographicsInputDataParsers Overfull \hbox (28.1225pt too wide) in paragraph at lines 235--236 []\T1/pcr/m/n/10 emod_api.demographics.DemographicsTemplates Overfull \hbox (4.1225pt too wide) in paragraph at lines 237--238 []\T1/pcr/m/n/10 emod_api.demographics.grid_construction Overfull \hbox (40.1225pt too wide) in paragraph at lines 241--242 []\T1/pcr/m/n/10 emod_api.demographics.PreDefinedDistributions Overfull \hbox (40.1225pt too wide) in paragraph at lines 243--244 []\T1/pcr/m/n/10 emod_api.demographics.PropertiesAndAttributes Overfull \hbox (4.1225pt too wide) in paragraph at lines 273--274 []\T1/pcr/m/n/10 emod_api.schema.dtk_post_process_schema [67] Overfull \hbox (28.1225pt too wide) in paragraph at lines 289--290 []\T1/pcr/m/n/10 emod_api.serialization.SerializedPopulation Overfull \hbox (15.62103pt too wide) in paragraph at lines 301--303 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 303--305 []\T1/pcr/m/n/10 examine_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 313--315 []\T1/pcr/m/n/10 fill_nodes_legacy() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (46.65079pt too wide) in paragraph at lines 313--315 \T1/ptm/m/it/10 emod_api.demographics.DemographicsInputDataParsers\T1/ptm/m/n/1 0 ), Overfull \hbox (4.62106pt too wide) in paragraph at lines 315--317 []\T1/pcr/m/n/10 finalize() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.schema_to_ class.ReadOnlyDict Overfull \hbox (36.30013pt too wide) in paragraph at lines 317--319 []\T1/pcr/m/n/10 find() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule emod_api.ser ialization.SerializedPopulation\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 319--321 []\T1/pcr/m/n/10 flattenConfig() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (81.59949pt too wide) in paragraph at lines 321--323 []\T1/pcr/m/n/10 flush() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serialization .SerializedPopulation.SerializedPopulation Underfull \hbox (badness 10000) in paragraph at lines 325--327 []\T1/pcr/m/n/10 from_csv() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 325--327 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 327--328 []\T1/pcr/m/n/10 from_csv() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 328--330 []\T1/pcr/m/n/10 from_data() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demograph ics.Node.Node Underfull \hbox (badness 10000) in paragraph at lines 330--332 []\T1/pcr/m/n/10 from_dataframe() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (17.1711pt too wide) in paragraph at lines 330--332 \T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/ptm/m/n/10 ), Overfull \hbox (16.1225pt too wide) in paragraph at lines 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(\T1/ptm/m/it/10 emod_api.weather.w eather.Metadata Underfull \hbox (badness 10000) in paragraph at lines 346--348 []\T1/pcr/m/n/10 from_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 346--348 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 348--350 []\T1/pcr/m/n/10 from_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (17.1711pt too wide) in paragraph at lines 348--350 \T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 350--351 []\T1/pcr/m/n/10 from_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 351--353 []\T1/pcr/m/n/10 from_params() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 351--353 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), 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paragraph at lines 363--365 []\T1/pcr/m/n/10 GenderDataType() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migr ation.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 365--367 []\T1/pcr/m/n/10 generate_demographics() Overfull \hbox (115.97037pt too wide) in paragraph at lines 365--367 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator.Dem ographicsGenerator Overfull \hbox (80.97084pt too wide) in paragraph at lines 367--369 []\T1/pcr/m/n/10 generate_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demog raphics.BaseInputFile.BaseInputFile Overfull \hbox (85.96114pt too wide) in paragraph at lines 369--371 []\T1/pcr/m/n/10 generate_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demog raphics.Demographics.Demographics [68] Underfull \hbox (badness 10000) in paragraph at lines 371--373 []\T1/pcr/m/n/10 generate_headers() Overfull \hbox (29.07082pt too wide) in paragraph at lines 371--373 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.BaseInputFile.BaseInputFi le Underfull \hbox (badness 10000) in paragraph at lines 373--375 []\T1/pcr/m/n/10 generate_metadata() Overfull \hbox (115.97037pt too wide) in paragraph at lines 373--375 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator.Dem ographicsGenerator Overfull \hbox (173.87039pt too wide) in paragraph at lines 375--377 []\T1/pcr/m/n/10 generate_nodes() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demo graphics.DemographicsGenerator.DemographicsGenerator Underfull \hbox (badness 10000) in paragraph at lines 378--380 []\T1/pcr/m/n/10 get_bbox() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 378--380 \T1/ptm/m/it/10 emod_api.demographics.grid_construction\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 380--382 []\T1/pcr/m/n/10 get_class_with_defaults() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in m od-ule Overfull \hbox (62.64088pt too wide) in paragraph at lines 382--384 \T1/ptm/m/it/10 mod-ule emod_api.config.default_from_schema_no_validation\T1/pt m/m/n/10 ), Overfull \hbox (45.42091pt too wide) in paragraph at lines 384--386 \T1/ptm/m/it/10 ule emod_api.config.default_from_schema_no_validation\T1/ptm/m/ n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 389--391 []\T1/pcr/m/n/10 get_fert_dist() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (15.62103pt too wide) in paragraph at lines 389--391 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 391--393 []\T1/pcr/m/n/10 get_grid_cell_id() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 391--393 \T1/ptm/m/it/10 emod_api.demographics.grid_construction\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 393--395 []\T1/pcr/m/n/10 get_next_individual_suid() Overfull \hbox (77.69946pt too wide) in paragraph at lines 393--395 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10000) in paragraph at lines 486--488 []\T1/pcr/m/n/10 lat_lon_from_nodeid() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 489--491 []\T1/pcr/m/n/10 LINEAR_INTERPOLATION Underfull \hbox (badness 10000) in paragraph at lines 489--491 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 491--493 []\T1/pcr/m/n/10 load_default_config_as_rod() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 i n mod-ule Overfull \hbox (31.30106pt too wide) in paragraph at lines 491--493 \T1/ptm/m/it/10 emod_api.config.default_from_schema_no_validation\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 493--495 []\T1/pcr/m/n/10 LOCAL \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.migra tion.Migration Underfull \hbox (badness 10000) in paragraph at lines 496--498 []\T1/pcr/m/n/10 lon_lat_2_point() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in 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lines 651--653 []\T1/pcr/m/n/10 num_channels() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channe lreports.channels.Header Overfull \hbox (74.83089pt too wide) in paragraph at lines 653--655 []\T1/pcr/m/n/10 num_time_steps() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.chan nelreports.channels.ChannelReport Overfull \hbox (43.71117pt too wide) in paragraph at lines 655--657 []\T1/pcr/m/n/10 num_time_steps() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.chan nelreports.channels.Header Underfull \hbox (badness 10000) in paragraph at lines 660--662 []\T1/pcr/m/n/10 ONE_FOR_EACH_GENDER Underfull \hbox (badness 10000) in paragraph at lines 660--662 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 662--663 []\T1/pcr/m/n/10 OverlayNode \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 666--668 []\T1/pcr/m/n/10 PIECEWISE_CONSTANT Underfull \hbox (badness 10000) in paragraph at lines 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aphics.Node.Node Underfull \hbox (badness 10000) in paragraph at lines 701--703 []\T1/pcr/m/n/10 SAME_FOR_BOTH_GENDERS Underfull \hbox (badness 10000) in paragraph at lines 701--703 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 704--706 []\T1/pcr/m/n/10 ScheduledCampaignEvent() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 706--708 []\T1/pcr/m/n/10 schema_to_config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 706--708 \T1/ptm/m/it/10 emod_api.config.from_poi_and_binary\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 708--710 []\T1/pcr/m/n/10 schema_to_config_subnode() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (31.30106pt too wide) in paragraph at lines 708--710 \T1/ptm/m/it/10 emod_api.config.default_from_schema_no_validation\T1/ptm/m/n/10 ), Underfull \hbox 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graphics.DemographicsGenerator.DemographicsGenerator Underfull \hbox (badness 10000) in paragraph at lines 729--731 []\T1/pcr/m/n/10 set_risk_mod() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 729--731 \T1/ptm/m/it/10 emod_api.demographics.demographics_utils\T1/ptm/m/n/10 ), Overfull \hbox (16.62106pt too wide) in paragraph at lines 731--733 []\T1/pcr/m/n/10 set_schema() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.schema_t o_class.ReadOnlyDict Underfull \hbox (badness 10000) in paragraph at lines 734--736 []\T1/pcr/m/n/10 set_schema() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 734--736 \T1/ptm/m/it/10 emod_api.config.from_poi_and_binary\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 736--738 []\T1/pcr/m/n/10 set_static_demographics() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in m od-ule Underfull \hbox (badness 10000) in paragraph at lines 736--738 \T1/ptm/m/it/10 emod_api.demographics.demographics_utils\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 738--740 []\T1/pcr/m/n/10 SetAgeDistribution() Overfull \hbox (34.06111pt too wide) in paragraph at lines 738--740 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Overfull \hbox (79.96114pt too wide) in paragraph at lines 740--742 []\T1/pcr/m/n/10 SetBirthRate() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demogr aphics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 742--744 []\T1/pcr/m/n/10 SetConstantRisk() Overfull \hbox (34.06111pt too wide) in paragraph at lines 742--744 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 744--746 []\T1/pcr/m/n/10 SetConstantSusceptibility() Overfull \hbox (34.06111pt too wide) in paragraph at lines 744--746 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull 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emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 754--756 []\T1/pcr/m/n/10 SetDefaultProperties() Overfull \hbox (34.06111pt too wide) in paragraph at lines 754--756 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 756--758 []\T1/pcr/m/n/10 SetDefaultPropertiesFertMort() Overfull \hbox (34.06111pt too wide) in paragraph at lines 756--758 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Overfull \hbox (34.1225pt too wide) in paragraph at lines 758--760 []\T1/pcr/m/n/10 SetEquilibriumAgeDistFromBirthAndMortRates() Overfull \hbox (34.06111pt too wide) in paragraph at lines 758--760 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 760--762 []\T1/pcr/m/n/10 SetHeteroRiskExponDist() Overfull \hbox (34.06111pt too wide) in paragraph at lines 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too wide) in paragraph at lines 768--770 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 770--772 []\T1/pcr/m/n/10 SetInitialAgeLikeSubSaharanAfrica() Overfull \hbox (34.06111pt too wide) in paragraph at lines 770--772 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 772--774 []\T1/pcr/m/n/10 SetInitPrevFromUniformDraw() Overfull \hbox (34.06111pt too wide) in paragraph at lines 772--774 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 774--776 []\T1/pcr/m/n/10 SetMinimalNodeAttributes() Overfull \hbox (34.06111pt too wide) in paragraph at lines 774--776 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 776--778 []\T1/pcr/m/n/10 SetMortalityDistribution() Overfull \hbox (34.06111pt too wide) in paragraph at lines 776--778 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 778--780 []\T1/pcr/m/n/10 SetMortalityRate() Overfull \hbox (34.06111pt too wide) in paragraph at lines 778--780 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 780--782 []\T1/pcr/m/n/10 SetNodeDefaultFromTemplate() Overfull \hbox (34.06111pt too wide) in paragraph at lines 780--782 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 782--784 []\T1/pcr/m/n/10 SetOverdispersion() Overfull \hbox (34.06111pt too wide) in paragraph at lines 782--784 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 784--786 []\T1/pcr/m/n/10 SimpleSusceptibilityDistribution() \T1/ptm/m/n/10 (\T1/ptm/m/i t/10 in Overfull \hbox (46.96086pt too wide) in paragraph at lines 784--786 \T1/ptm/m/it/10 mod-ule emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/ 10 ), Overfull \hbox (34.70026pt too wide) in paragraph at lines 786--788 []\T1/pcr/m/n/10 simulation() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializ ation.dtkFileTools.DtkFileV1 Overfull \hbox (34.70026pt too wide) in paragraph at lines 788--790 []\T1/pcr/m/n/10 simulation() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializ ation.dtkFileTools.DtkFileV2 [73] Overfull \hbox (34.70026pt too wide) in paragraph at lines 790--792 []\T1/pcr/m/n/10 simulation() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializ ation.dtkFileTools.DtkFileV3 Overfull \hbox (2.94016pt too wide) in paragraph at lines 792--793 []\T1/pcr/m/n/10 Snappy \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in emod_api.seria lization.dtkFileSupport\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in 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