Read the Docs build information Build id: 854970 Project: institute-for-disease-modeling-emodpy-malaria Version: latest Commit: 5f7a999ee9e51cdae8eafe998aee2043b61a7b7a Date: 2022-02-15T19:17:33.701275Z State: finished Success: True [rtd-command-info] start-time: 2022-02-15T19:17:35.567876Z, end-time: 2022-02-15T19:17:38.410490Z, duration: 2, exit-code: 0 git clone --no-single-branch --depth 50 git@github.com:InstituteforDiseaseModeling/emodpy-malaria.git . Cloning into '.'... Warning: Permanently added 'github.com,192.30.255.112' (ECDSA) to the list of known hosts. [rtd-command-info] start-time: 2022-02-15T19:17:38.616852Z, end-time: 2022-02-15T19:17:38.872720Z, duration: 0, exit-code: 0 git checkout --force origin/main Note: checking out 'origin/main'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at 5f7a999 Add add_larvicide function (#415) [rtd-command-info] start-time: 2022-02-15T19:17:39.136303Z, end-time: 2022-02-15T19:17:39.201744Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2022-02-15T19:17:40.427318Z, end-time: 2022-02-15T19:17:45.545724Z, duration: 5, exit-code: 0 python3.8 -mvirtualenv Using base prefix '/home/docs/.pyenv/versions/3.8.6' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin/python3.8 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2022-02-15T19:17:45.712882Z, end-time: 2022-02-15T19:17:49.231700Z, duration: 3, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip<=21.3.1 setuptools<58.3.0 Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/simple Collecting pip<=21.3.1 Downloading pip-21.3.1-py3-none-any.whl (1.7 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.7/1.7 MB 34.5 MB/s eta 0:00:00 Collecting setuptools<58.3.0 Downloading setuptools-58.2.0-py3-none-any.whl (946 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 946.1/946.1 KB 268.5 MB/s eta 0:00:00 Installing collected packages: setuptools, pip Attempting uninstall: setuptools Found existing installation: setuptools 60.9.1 Uninstalling setuptools-60.9.1: Successfully uninstalled setuptools-60.9.1 Attempting uninstall: pip Found existing installation: pip 22.0.3 Uninstalling pip-22.0.3: Successfully uninstalled pip-22.0.3 Successfully installed pip-21.3.1 setuptools-58.2.0 [rtd-command-info] start-time: 2022-02-15T19:17:49.413640Z, end-time: 2022-02-15T19:18:17.072084Z, duration: 27, exit-code: 0 python -m pip install --upgrade --no-cache-dir mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<2.2 Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/simple Collecting mock==1.0.1 Downloading mock-1.0.1.zip (861 kB) Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting pillow==5.4.1 Downloading Pillow-5.4.1.tar.gz (16.0 MB) Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.6-py2.py3-none-any.whl (3.1 MB) Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) Collecting readthedocs-sphinx-ext<2.2 Downloading readthedocs_sphinx_ext-2.1.4-py2.py3-none-any.whl (29 kB) Collecting future Downloading future-0.18.2.tar.gz (829 kB) Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting docutils>=0.11 Downloading docutils-0.18.1-py2.py3-none-any.whl (570 kB) Collecting babel!=2.0,>=1.3 Downloading Babel-2.9.1-py2.py3-none-any.whl (8.8 MB) Collecting six>=1.5 Downloading six-1.16.0-py2.py3-none-any.whl (11 kB) Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.2.0-py2.py3-none-any.whl (93 kB) Collecting sphinxcontrib-websupport Downloading sphinxcontrib_websupport-1.2.4-py2.py3-none-any.whl (39 kB) Collecting Pygments>=2.0 Downloading Pygments-2.11.2-py3-none-any.whl (1.1 MB) Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from sphinx<2) (58.2.0) Collecting packaging Downloading packaging-21.3-py3-none-any.whl (40 kB) Collecting docutils>=0.11 Downloading docutils-0.17.1-py2.py3-none-any.whl (575 kB) Collecting requests>=2.0.0 Downloading requests-2.27.1-py2.py3-none-any.whl (63 kB) Collecting Jinja2>=2.3 Downloading Jinja2-3.0.3-py3-none-any.whl (133 kB) Collecting imagesize Downloading imagesize-1.3.0-py2.py3-none-any.whl (5.2 kB) Collecting pytz>=2015.7 Downloading pytz-2021.3-py2.py3-none-any.whl (503 kB) Collecting MarkupSafe>=2.0 Downloading MarkupSafe-2.0.1-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (30 kB) Collecting urllib3<1.27,>=1.21.1 Downloading urllib3-1.26.8-py2.py3-none-any.whl (138 kB) Collecting certifi>=2017.4.17 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for pillow: filename=Pillow-5.4.1-cp38-cp38-linux_x86_64.whl size=1260140 sha256=9dd364b1703319dc6eb67a5e73ccad07e803ef1dc9f32b681ae8a4b25b339667 Stored in directory: /tmp/pip-ephem-wheel-cache-m0p9yb4b/wheels/5f/a8/6b/5b7b3f764d879214eb03570f74d2b086201eb514e6ffa68d6d Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491070 sha256=e4958fdc8bb97c1d1b0cbecfa7fbaa80c87794fffca979802ac17fa109ca7f98 Stored in directory: /tmp/pip-ephem-wheel-cache-m0p9yb4b/wheels/8e/70/28/3d6ccd6e315f65f245da085482a2e1c7d14b90b30f239e2cf4 Successfully built mock pillow future Installing collected packages: urllib3, sphinxcontrib-serializinghtml, pytz, pyparsing, MarkupSafe, idna, charset-normalizer, certifi, sphinxcontrib-websupport, snowballstemmer, six, requests, Pygments, packaging, Jinja2, imagesize, future, docutils, babel, alabaster, sphinx, commonmark, sphinx-rtd-theme, recommonmark, readthedocs-sphinx-ext, pillow, mock Successfully installed Jinja2-3.0.3 MarkupSafe-2.0.1 Pygments-2.11.2 alabaster-0.7.12 babel-2.9.1 certifi-2021.10.8 charset-normalizer-2.0.12 commonmark-0.8.1 docutils-0.17.1 future-0.18.2 idna-3.3 imagesize-1.3.0 mock-1.0.1 packaging-21.3 pillow-5.4.1 pyparsing-3.0.7 pytz-2021.3 readthedocs-sphinx-ext-2.1.4 recommonmark-0.5.0 requests-2.27.1 six-1.16.0 snowballstemmer-2.2.0 sphinx-1.8.6 sphinx-rtd-theme-0.4.3 sphinxcontrib-serializinghtml-1.1.5 sphinxcontrib-websupport-1.2.4 urllib3-1.26.8 WARNING: You are using pip version 21.3.1; however, version 22.0.3 is available. You should consider upgrading via the '/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin/python -m pip install --upgrade pip' command. [rtd-command-info] start-time: 2022-02-15T19:18:17.265525Z, end-time: 2022-02-15T19:19:00.085839Z, duration: 42, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r requirements.txt Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/simple Collecting emodpy~=1.16 Downloading https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/emodpy/1.17.1/emodpy-1.17.1-py3-none-any.whl (116 kB) Collecting emod-malaria==0.0.10 Downloading https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/emod-malaria/0.0.10/emod_malaria-0.0.10-py3-none-any.whl (4.6 MB) Collecting snakemake~=6.12 Downloading snakemake-6.15.5.tar.gz (281 kB) Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting emod-api<2.0,>=1.20 Downloading https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/emod-api/1.21.1/emod_api-1.21.1-py3-none-any.whl (128 kB) 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pandas->emod-api<2.0,>=1.20->emodpy~=1.16->-r requirements.txt (line 1)) (2021.3) Collecting yarg Downloading yarg-0.1.9-py2.py3-none-any.whl (19 kB) Collecting docopt Downloading docopt-0.6.2.tar.gz (25 kB) Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Requirement already satisfied: future>=0.16.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from pyCOMPS~=2.5.0->idmtools-platform-comps~=1.6.0->emodpy~=1.16->-r requirements.txt (line 1)) (0.18.2) Collecting xdg>=4.0.1 Downloading xdg-5.1.1-py3-none-any.whl (5.0 kB) Collecting cached-property Downloading cached_property-1.5.2-py2.py3-none-any.whl (7.6 kB) Collecting cffi>=1.4.0 Downloading cffi-1.15.0-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (446 kB) Collecting pytest>=3.2.5 Downloading pytest-7.0.1-py3-none-any.whl (296 kB) Collecting cryptography>=2.0 Downloading cryptography-36.0.1-cp36-abi3-manylinux_2_24_x86_64.whl (3.6 MB) Collecting soupsieve>1.2 Downloading soupsieve-2.3.1-py3-none-any.whl (37 kB) Collecting scikit-learn Downloading scikit_learn-1.0.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (26.7 MB) Collecting pycparser Downloading pycparser-2.21-py2.py3-none-any.whl (118 kB) Collecting tomli>=1.0.0 Downloading tomli-2.0.1-py3-none-any.whl (12 kB) Collecting iniconfig Downloading iniconfig-1.1.1-py2.py3-none-any.whl (5.0 kB) Collecting py>=1.8.2 Downloading py-1.11.0-py2.py3-none-any.whl (98 kB) Collecting joblib>=0.11 Downloading joblib-1.1.0-py2.py3-none-any.whl (306 kB) Collecting threadpoolctl>=2.0.0 Downloading threadpoolctl-3.1.0-py3-none-any.whl (14 kB) Building wheels for collected packages: snakemake, connection-pool, bs4, stopit, prodict, sklearn, docopt Building wheel for snakemake (setup.py): started Building wheel for snakemake (setup.py): finished with status 'done' Created wheel for snakemake: filename=snakemake-6.15.5-py3-none-any.whl size=301660 sha256=152006df3f61daa1501e8d1f1f6536af7648f326e8c246ed9c5e06f09093dfdf Stored in directory: /tmp/pip-ephem-wheel-cache-40k3o5_z/wheels/62/3a/75/05d0bb847645cc2d43087329a2825dd9419d08b75d751e65c9 Building wheel for connection-pool (setup.py): started Building wheel for connection-pool (setup.py): finished with status 'done' Created wheel for connection-pool: filename=connection_pool-0.0.3-py3-none-any.whl size=4084 sha256=feaab0e5b58dae752b9e75b045bbf42c8073d9fe03af55a63aec56827b8e2ac4 Stored in directory: /tmp/pip-ephem-wheel-cache-40k3o5_z/wheels/0a/98/19/7c3152e8ffe9a430f80fd866c4d2b16b3945dc4ebb26961ec0 Building wheel for bs4 (setup.py): started Building wheel for bs4 (setup.py): finished with status 'done' Created wheel for bs4: filename=bs4-0.0.1-py3-none-any.whl size=1272 sha256=8cc08e7e915ac25b1d48daa8374abb1fe05a0d1c7e0247531290fc4ea9b32acc Stored in directory: /tmp/pip-ephem-wheel-cache-40k3o5_z/wheels/75/78/21/68b124549c9bdc94f822c02fb9aa3578a669843f9767776bca Building wheel for stopit (setup.py): started Building wheel for stopit (setup.py): finished with status 'done' Created wheel for stopit: filename=stopit-1.1.2-py3-none-any.whl size=11956 sha256=c48195b696b0a0d414d3ba8fa8e1a164a88e907917872677328f1896a8dec5e7 Stored in directory: /tmp/pip-ephem-wheel-cache-40k3o5_z/wheels/a8/bb/8f/6b9328d23c2dcedbfeb8498b9f650d55d463089e3b8fc0bfb2 Building wheel for prodict (setup.py): started Building wheel for prodict (setup.py): finished with status 'done' Created wheel for prodict: filename=prodict-0.8.18-py3-none-any.whl size=4223 sha256=510b7da75057bf3d87010a05bee7e323d770e218f6536d14ad98df6e76168461 Stored in directory: /tmp/pip-ephem-wheel-cache-40k3o5_z/wheels/f7/87/da/f7f3dad926a33705d391981f28b2c2d2b4bc7e1e4804e6fdfe Building wheel for sklearn (setup.py): started Building wheel for sklearn (setup.py): finished with status 'done' Created wheel for sklearn: filename=sklearn-0.0-py2.py3-none-any.whl size=1310 sha256=0568c170fd08212dd6c68148b92f8ca743cefe6fa6640a5e4c73ed80bff3076e Stored in directory: /tmp/pip-ephem-wheel-cache-40k3o5_z/wheels/22/0b/40/fd3f795caaa1fb4c6cb738bc1f56100be1e57da95849bfc897 Building wheel for docopt (setup.py): started Building wheel for docopt (setup.py): finished with status 'done' Created wheel for docopt: filename=docopt-0.6.2-py2.py3-none-any.whl size=13723 sha256=860a8b22210afb70368cbe8ecb164fd25911d17237a74ab26fb1441395e024ff Stored in directory: /tmp/pip-ephem-wheel-cache-40k3o5_z/wheels/56/ea/58/ead137b087d9e326852a851351d1debf4ada529b6ac0ec4e8c Successfully built snakemake connection-pool bs4 stopit prodict sklearn docopt Installing collected packages: pycparser, numpy, zipp, yarg, tomli, threadpoolctl, scipy, python-dateutil, py, pluggy, packaging, joblib, iniconfig, humanfriendly, docopt, cffi, cached-property, attrs, xdg, traitlets, tqdm, tabulate, soupsieve, smmap, scikit-learn, pyyaml, pytest, pyrsistent, pygit2, pipreqs, pandas, more-itertools, jeepney, importlib-resources, diskcache, cryptography, coloredlogs, backoff, sklearn, shapely, SecretStorage, pytest-lazy-fixture, pyproj, pyCOMPS, prodict, pillow, lz4, kiwisolver, jupyter-core, jsonschema, ipython-genutils, importlib-metadata, idmtools, gitdb, geographiclib, fonttools, cycler, beautifulsoup4, wrapt, toposort, stopit, smart-open, ratelimiter, pulp, psutil, nbformat, matplotlib, keyring, idmtools-platform-comps, idmtools-models, gitpython, filelock, emod-api, datrie, connection-pool, configargparse, click, bs4, astunparse, astor, appdirs, snakemake, emodpy, emod-malaria Attempting uninstall: packaging Found existing installation: packaging 21.3 Uninstalling packaging-21.3: Successfully uninstalled packaging-21.3 Attempting uninstall: pillow Found existing installation: Pillow 5.4.1 Uninstalling Pillow-5.4.1: Successfully uninstalled Pillow-5.4.1 Successfully installed SecretStorage-3.3.1 appdirs-1.4.4 astor-0.8.1 astunparse-1.6.3 attrs-21.4.0 backoff-1.10.0 beautifulsoup4-4.10.0 bs4-0.0.1 cached-property-1.5.2 cffi-1.15.0 click-7.1.2 coloredlogs-15.0.1 configargparse-1.5.3 connection-pool-0.0.3 cryptography-36.0.1 cycler-0.11.0 datrie-0.8.2 diskcache-5.2.1 docopt-0.6.2 emod-api-1.21.1 emod-malaria-0.0.10 emodpy-1.17.1 filelock-3.5.0 fonttools-4.29.1 geographiclib-1.52 gitdb-4.0.9 gitpython-3.1.26 humanfriendly-10.0 idmtools-1.6.4 idmtools-models-1.6.4 idmtools-platform-comps-1.6.4 importlib-metadata-4.11.1 importlib-resources-5.4.0 iniconfig-1.1.1 ipython-genutils-0.2.0 jeepney-0.7.1 joblib-1.1.0 jsonschema-4.4.0 jupyter-core-4.9.1 keyring-23.5.0 kiwisolver-1.3.2 lz4-4.0.0 matplotlib-3.5.1 more-itertools-8.8.0 nbformat-5.1.3 numpy-1.22.2 packaging-20.9 pandas-1.1.5 pillow-9.0.1 pipreqs-0.4.11 pluggy-0.13.1 prodict-0.8.18 psutil-5.9.0 pulp-2.6.0 py-1.11.0 pyCOMPS-2.5.0 pycparser-2.21 pygit2-1.5.0 pyproj-3.3.0 pyrsistent-0.18.1 pytest-7.0.1 pytest-lazy-fixture-0.6.3 python-dateutil-2.8.2 pyyaml-5.4.1 ratelimiter-1.2.0.post0 scikit-learn-1.0.2 scipy-1.8.0 shapely-1.8.0 sklearn-0.0 smart-open-5.2.1 smmap-5.0.0 snakemake-6.15.5 soupsieve-2.3.1 stopit-1.1.2 tabulate-0.8.9 threadpoolctl-3.1.0 tomli-2.0.1 toposort-1.7 tqdm-4.62.3 traitlets-5.1.1 wrapt-1.13.3 xdg-5.1.1 yarg-0.1.9 zipp-3.7.0 WARNING: You are using pip version 21.3.1; however, version 22.0.3 is available. You should consider upgrading via the '/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin/python -m pip install --upgrade pip' command. [rtd-command-info] start-time: 2022-02-15T19:19:00.266750Z, end-time: 2022-02-15T19:19:05.673297Z, duration: 5, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r docs/requirements.txt Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/simple Collecting plantweb~=1.2.1 Downloading plantweb-1.2.1-py3-none-any.whl (20 kB) Collecting pygit2~=1.4.0 Downloading pygit2-1.4.0-cp38-cp38-manylinux2010_x86_64.whl (3.0 MB) Collecting PyGithub~=1.54 Downloading PyGithub-1.55-py3-none-any.whl (291 kB) Collecting sphinx-copybutton~=0.3.1 Downloading sphinx_copybutton-0.3.3-py3-none-any.whl (12 kB) Collecting sphinx-rtd-theme~=0.5.0 Downloading sphinx_rtd_theme-0.5.2-py2.py3-none-any.whl (9.1 MB) Collecting sphinxcontrib-napoleon~=0.7 Downloading sphinxcontrib_napoleon-0.7-py2.py3-none-any.whl (17 kB) Collecting sphinxcontrib-programoutput~=0.16 Downloading sphinxcontrib_programoutput-0.17-py2.py3-none-any.whl (22 kB) Collecting sphinx~=3.3.1 Downloading Sphinx-3.3.1-py3-none-any.whl (2.9 MB) Collecting sphinxext.remoteliteralinclude Downloading sphinxext_remoteliteralinclude-0.3.0-py3-none-any.whl (6.3 kB) Requirement already satisfied: requests in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from plantweb~=1.2.1->-r docs/requirements.txt (line 1)) (2.27.1) Requirement already satisfied: six in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from plantweb~=1.2.1->-r docs/requirements.txt (line 1)) (1.16.0) Requirement already satisfied: docutils in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from plantweb~=1.2.1->-r docs/requirements.txt (line 1)) (0.17.1) Requirement already satisfied: cffi>=1.4.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from pygit2~=1.4.0->-r docs/requirements.txt (line 2)) (1.15.0) Requirement already satisfied: cached-property in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from pygit2~=1.4.0->-r docs/requirements.txt (line 2)) (1.5.2) Collecting pyjwt>=2.0 Downloading PyJWT-2.3.0-py3-none-any.whl (16 kB) Collecting deprecated Downloading Deprecated-1.2.13-py2.py3-none-any.whl (9.6 kB) Collecting pynacl>=1.4.0 Downloading PyNaCl-1.5.0-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (856 kB) Collecting docutils Downloading docutils-0.16-py2.py3-none-any.whl (548 kB) Collecting pockets>=0.3 Downloading pockets-0.9.1-py2.py3-none-any.whl (26 kB) Requirement already satisfied: snowballstemmer>=1.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from sphinx~=3.3.1->-r docs/requirements.txt (line 8)) (2.2.0) Requirement already satisfied: babel>=1.3 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from sphinx~=3.3.1->-r docs/requirements.txt (line 8)) (2.9.1) Requirement already satisfied: alabaster<0.8,>=0.7 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from sphinx~=3.3.1->-r docs/requirements.txt (line 8)) (0.7.12) Collecting sphinxcontrib-htmlhelp Downloading sphinxcontrib_htmlhelp-2.0.0-py2.py3-none-any.whl (100 kB) Requirement already satisfied: Pygments>=2.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from sphinx~=3.3.1->-r docs/requirements.txt (line 8)) (2.11.2) Requirement already satisfied: imagesize in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from sphinx~=3.3.1->-r docs/requirements.txt (line 8)) (1.3.0) Collecting sphinxcontrib-applehelp Downloading sphinxcontrib_applehelp-1.0.2-py2.py3-none-any.whl (121 kB) Collecting sphinxcontrib-devhelp Downloading sphinxcontrib_devhelp-1.0.2-py2.py3-none-any.whl (84 kB) Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from sphinx~=3.3.1->-r docs/requirements.txt (line 8)) (58.2.0) Requirement already satisfied: packaging in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from sphinx~=3.3.1->-r docs/requirements.txt (line 8)) (20.9) Collecting sphinxcontrib-qthelp Downloading sphinxcontrib_qthelp-1.0.3-py2.py3-none-any.whl (90 kB) Requirement already satisfied: sphinxcontrib-serializinghtml in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from sphinx~=3.3.1->-r docs/requirements.txt (line 8)) (1.1.5) Requirement already satisfied: Jinja2>=2.3 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from sphinx~=3.3.1->-r docs/requirements.txt (line 8)) (3.0.3) Collecting sphinxcontrib-jsmath Downloading sphinxcontrib_jsmath-1.0.1-py2.py3-none-any.whl (5.1 kB) Requirement already satisfied: pytz>=2015.7 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from babel>=1.3->sphinx~=3.3.1->-r docs/requirements.txt (line 8)) (2021.3) Requirement already satisfied: pycparser in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from cffi>=1.4.0->pygit2~=1.4.0->-r docs/requirements.txt (line 2)) (2.21) Requirement already satisfied: MarkupSafe>=2.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from Jinja2>=2.3->sphinx~=3.3.1->-r docs/requirements.txt (line 8)) (2.0.1) Requirement already satisfied: charset-normalizer~=2.0.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from requests->plantweb~=1.2.1->-r docs/requirements.txt (line 1)) (2.0.12) Requirement already satisfied: idna<4,>=2.5 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from requests->plantweb~=1.2.1->-r docs/requirements.txt (line 1)) (3.3) Requirement already satisfied: certifi>=2017.4.17 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from requests->plantweb~=1.2.1->-r docs/requirements.txt (line 1)) (2021.10.8) Requirement already satisfied: urllib3<1.27,>=1.21.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from requests->plantweb~=1.2.1->-r docs/requirements.txt (line 1)) (1.26.8) Requirement already satisfied: wrapt<2,>=1.10 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from deprecated->PyGithub~=1.54->-r docs/requirements.txt (line 3)) (1.13.3) Requirement already satisfied: pyparsing>=2.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from packaging->sphinx~=3.3.1->-r docs/requirements.txt (line 8)) (3.0.7) Installing collected packages: sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, docutils, sphinx, pynacl, pyjwt, pockets, deprecated, sphinxext.remoteliteralinclude, sphinxcontrib-programoutput, sphinxcontrib-napoleon, sphinx-rtd-theme, sphinx-copybutton, PyGithub, pygit2, plantweb Attempting uninstall: docutils Found existing installation: docutils 0.17.1 Uninstalling docutils-0.17.1: Successfully uninstalled docutils-0.17.1 Attempting uninstall: sphinx Found existing installation: Sphinx 1.8.6 Uninstalling Sphinx-1.8.6: Successfully uninstalled Sphinx-1.8.6 Attempting uninstall: sphinx-rtd-theme Found existing installation: sphinx-rtd-theme 0.4.3 Uninstalling sphinx-rtd-theme-0.4.3: Successfully uninstalled sphinx-rtd-theme-0.4.3 Attempting uninstall: pygit2 Found existing installation: pygit2 1.5.0 Uninstalling pygit2-1.5.0: Successfully uninstalled pygit2-1.5.0 Successfully installed PyGithub-1.55 deprecated-1.2.13 docutils-0.16 plantweb-1.2.1 pockets-0.9.1 pygit2-1.4.0 pyjwt-2.3.0 pynacl-1.5.0 sphinx-3.3.1 sphinx-copybutton-0.3.3 sphinx-rtd-theme-0.5.2 sphinxcontrib-applehelp-1.0.2 sphinxcontrib-devhelp-1.0.2 sphinxcontrib-htmlhelp-2.0.0 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-napoleon-0.7 sphinxcontrib-programoutput-0.17 sphinxcontrib-qthelp-1.0.3 sphinxext.remoteliteralinclude-0.3.0 WARNING: You are using pip version 21.3.1; however, version 22.0.3 is available. You should consider upgrading via the '/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin/python -m pip install --upgrade pip' command. [rtd-command-info] start-time: 2022-02-15T19:19:05.870451Z, end-time: 2022-02-15T19:19:07.298386Z, duration: 1, exit-code: 0 python ./setup.py install --force running install running bdist_egg running egg_info creating emodpy_malaria.egg-info writing emodpy_malaria.egg-info/PKG-INFO writing dependency_links to emodpy_malaria.egg-info/dependency_links.txt writing requirements to emodpy_malaria.egg-info/requires.txt writing top-level names to emodpy_malaria.egg-info/top_level.txt writing manifest file 'emodpy_malaria.egg-info/SOURCES.txt' reading manifest file 'emodpy_malaria.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'emodpy_malaria.egg-info/SOURCES.txt' installing library code to build/bdist.linux-x86_64/egg running install_lib running build_py creating build creating build/lib creating build/lib/emodpy_malaria copying emodpy_malaria/malaria_config.py -> build/lib/emodpy_malaria copying emodpy_malaria/vector_config.py -> build/lib/emodpy_malaria copying emodpy_malaria/__init__.py -> build/lib/emodpy_malaria copying emodpy_malaria/malaria_vector_species_params.py -> build/lib/emodpy_malaria creating build/lib/tests copying tests/add_itn.py -> build/lib/tests copying tests/__init__.py -> build/lib/tests creating build/lib/emodpy_malaria/reporters copying emodpy_malaria/reporters/builtin.py -> build/lib/emodpy_malaria/reporters copying emodpy_malaria/reporters/__init__.py -> build/lib/emodpy_malaria/reporters creating build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/bednet.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/ivermectin.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/scale_larval_habitats.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/sugartrap.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/diag_survey.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/irs.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/larvicide.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/spacespraying.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/inputeir.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/mosquitorelease.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/treatment_seeking.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/community_health_worker.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/udbednet.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/drug.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/outbreak.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/__init__.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/vaccine.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/drug_campaign.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/outdoorrestkill.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/common.py -> build/lib/emodpy_malaria/interventions creating build/lib/emodpy_malaria/demographics copying emodpy_malaria/demographics/MalariaDemographics.py -> build/lib/emodpy_malaria/demographics copying emodpy_malaria/demographics/__init__.py -> build/lib/emodpy_malaria/demographics creating build/lib/tests/unittests copying tests/unittests/test_malaria_interventions.py -> build/lib/tests/unittests copying tests/unittests/get_latest_schema.py -> build/lib/tests/unittests copying tests/unittests/test_treatment_seeking.py -> build/lib/tests/unittests copying tests/unittests/test_malaria_reporters.py -> build/lib/tests/unittests copying tests/unittests/test_malaria_interventions_as_files.py -> build/lib/tests/unittests copying tests/unittests/get_unittest_coverage.py -> build/lib/tests/unittests copying tests/unittests/test_malaria_config.py -> build/lib/tests/unittests copying tests/unittests/schema_path_file.py -> build/lib/tests/unittests copying tests/unittests/test_demog.py -> build/lib/tests/unittests copying tests/unittests/manifest.py -> build/lib/tests/unittests copying tests/unittests/test_import.py -> build/lib/tests/unittests copying tests/unittests/__init__.py -> build/lib/tests/unittests copying emodpy_malaria/malaria_drug_params.csv -> build/lib/emodpy_malaria creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/egg creating build/bdist.linux-x86_64/egg/emodpy_malaria copying build/lib/emodpy_malaria/malaria_config.py -> build/bdist.linux-x86_64/egg/emodpy_malaria creating build/bdist.linux-x86_64/egg/emodpy_malaria/reporters copying build/lib/emodpy_malaria/reporters/builtin.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/reporters copying build/lib/emodpy_malaria/reporters/__init__.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/reporters copying build/lib/emodpy_malaria/vector_config.py -> build/bdist.linux-x86_64/egg/emodpy_malaria copying build/lib/emodpy_malaria/malaria_drug_params.csv -> build/bdist.linux-x86_64/egg/emodpy_malaria creating build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/bednet.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/ivermectin.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/scale_larval_habitats.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/sugartrap.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/diag_survey.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/irs.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/larvicide.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/spacespraying.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/inputeir.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/mosquitorelease.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/treatment_seeking.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/community_health_worker.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/udbednet.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/drug.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/outbreak.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/__init__.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/vaccine.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/drug_campaign.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/outdoorrestkill.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/common.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions creating build/bdist.linux-x86_64/egg/emodpy_malaria/demographics copying build/lib/emodpy_malaria/demographics/MalariaDemographics.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/demographics copying build/lib/emodpy_malaria/demographics/__init__.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/demographics copying build/lib/emodpy_malaria/__init__.py -> build/bdist.linux-x86_64/egg/emodpy_malaria copying build/lib/emodpy_malaria/malaria_vector_species_params.py -> build/bdist.linux-x86_64/egg/emodpy_malaria creating build/bdist.linux-x86_64/egg/tests creating build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_malaria_interventions.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/get_latest_schema.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_treatment_seeking.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_malaria_reporters.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_malaria_interventions_as_files.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/get_unittest_coverage.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_malaria_config.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/schema_path_file.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_demog.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/manifest.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_import.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/__init__.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/add_itn.py -> build/bdist.linux-x86_64/egg/tests copying build/lib/tests/__init__.py -> build/bdist.linux-x86_64/egg/tests byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/malaria_config.py to malaria_config.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/reporters/builtin.py to builtin.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/reporters/__init__.py to __init__.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/vector_config.py to vector_config.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/bednet.py to bednet.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/ivermectin.py to ivermectin.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/scale_larval_habitats.py to scale_larval_habitats.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/sugartrap.py to sugartrap.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/diag_survey.py to diag_survey.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/irs.py to irs.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/larvicide.py to larvicide.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/spacespraying.py to spacespraying.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/inputeir.py to inputeir.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/mosquitorelease.py to mosquitorelease.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/treatment_seeking.py to treatment_seeking.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/community_health_worker.py to community_health_worker.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/udbednet.py to udbednet.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/drug.py to drug.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/outbreak.py to outbreak.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/__init__.py to __init__.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/vaccine.py to vaccine.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/drug_campaign.py to drug_campaign.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/outdoorrestkill.py to outdoorrestkill.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/common.py to common.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/demographics/MalariaDemographics.py to MalariaDemographics.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/demographics/__init__.py to __init__.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/__init__.py to __init__.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/malaria_vector_species_params.py to malaria_vector_species_params.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_malaria_interventions.py to test_malaria_interventions.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/get_latest_schema.py to get_latest_schema.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_treatment_seeking.py to test_treatment_seeking.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_malaria_reporters.py to test_malaria_reporters.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_malaria_interventions_as_files.py to test_malaria_interventions_as_files.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/get_unittest_coverage.py to get_unittest_coverage.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_malaria_config.py to test_malaria_config.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/schema_path_file.py to schema_path_file.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_demog.py to test_demog.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/manifest.py to manifest.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_import.py to test_import.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/__init__.py to __init__.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/add_itn.py to add_itn.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/__init__.py to __init__.cpython-38.pyc creating build/bdist.linux-x86_64/egg/EGG-INFO copying emodpy_malaria.egg-info/PKG-INFO -> build/bdist.linux-x86_64/egg/EGG-INFO copying emodpy_malaria.egg-info/SOURCES.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying emodpy_malaria.egg-info/dependency_links.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying emodpy_malaria.egg-info/requires.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying emodpy_malaria.egg-info/top_level.txt -> build/bdist.linux-x86_64/egg/EGG-INFO zip_safe flag not set; analyzing archive contents... emodpy_malaria.__pycache__.malaria_config.cpython-38: module references __file__ tests.unittests.__pycache__.manifest.cpython-38: module references __file__ tests.unittests.__pycache__.schema_path_file.cpython-38: module references __file__ tests.unittests.__pycache__.test_demog.cpython-38: module references __file__ tests.unittests.__pycache__.test_malaria_config.cpython-38: module references __file__ tests.unittests.__pycache__.test_malaria_interventions.cpython-38: module references __file__ tests.unittests.__pycache__.test_malaria_reporters.cpython-38: module references __file__ tests.unittests.__pycache__.test_treatment_seeking.cpython-38: module references __file__ creating dist creating 'dist/emodpy_malaria-1.1.2-py3.8.egg' and adding 'build/bdist.linux-x86_64/egg' to it removing 'build/bdist.linux-x86_64/egg' (and everything under it) Processing emodpy_malaria-1.1.2-py3.8.egg creating /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages/emodpy_malaria-1.1.2-py3.8.egg Extracting emodpy_malaria-1.1.2-py3.8.egg to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Adding emodpy-malaria 1.1.2 to easy-install.pth file Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages/emodpy_malaria-1.1.2-py3.8.egg Processing dependencies for emodpy-malaria==1.1.2 Searching for snakemake==6.15.5 Best match: snakemake 6.15.5 Adding snakemake 6.15.5 to easy-install.pth file Installing snakemake script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Installing snakemake-bash-completion script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for emod-malaria==0.0.10 Best match: emod-malaria 0.0.10 Adding emod-malaria 0.0.10 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for emodpy==1.17.1 Best match: emodpy 1.17.1 Adding emodpy 1.17.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for stopit==1.1.2 Best match: stopit 1.1.2 Adding stopit 1.1.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for docutils==0.16 Best match: docutils 0.16 Adding docutils 0.16 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for GitPython==3.1.26 Best match: GitPython 3.1.26 Adding GitPython 3.1.26 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for PuLP==2.6.0 Best match: PuLP 2.6.0 Adding PuLP 2.6.0 to easy-install.pth file Installing pulptest script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for PyYAML==5.4.1 Best match: PyYAML 5.4.1 Adding PyYAML 5.4.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for ConfigArgParse==1.5.3 Best match: ConfigArgParse 1.5.3 Adding ConfigArgParse 1.5.3 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for requests==2.27.1 Best match: requests 2.27.1 Adding requests 2.27.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for nbformat==5.1.3 Best match: nbformat 5.1.3 Adding nbformat 5.1.3 to easy-install.pth file Installing jupyter-trust script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for tabulate==0.8.9 Best match: tabulate 0.8.9 Adding tabulate 0.8.9 to easy-install.pth file Installing tabulate script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for ratelimiter==1.2.0.post0 Best match: ratelimiter 1.2.0.post0 Adding ratelimiter 1.2.0.post0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for connection-pool==0.0.3 Best match: connection-pool 0.0.3 Adding connection-pool 0.0.3 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for smart-open==5.2.1 Best match: smart-open 5.2.1 Adding smart-open 5.2.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for wrapt==1.13.3 Best match: wrapt 1.13.3 Adding wrapt 1.13.3 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for datrie==0.8.2 Best match: datrie 0.8.2 Adding datrie 0.8.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for appdirs==1.4.4 Best match: appdirs 1.4.4 Adding appdirs 1.4.4 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for toposort==1.7 Best match: toposort 1.7 Adding toposort 1.7 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for psutil==5.9.0 Best match: psutil 5.9.0 Adding psutil 5.9.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for jsonschema==4.4.0 Best match: jsonschema 4.4.0 Adding jsonschema 4.4.0 to easy-install.pth file Installing jsonschema script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for filelock==3.5.0 Best match: filelock 3.5.0 Adding filelock 3.5.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for astor==0.8.1 Best match: astor 0.8.1 Adding astor 0.8.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for idmtools==1.6.4 Best match: idmtools 1.6.4 Adding idmtools 1.6.4 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for matplotlib==3.5.1 Best match: matplotlib 3.5.1 Adding matplotlib 3.5.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for astunparse==1.6.3 Best match: astunparse 1.6.3 Adding astunparse 1.6.3 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for emod-api==1.21.1 Best match: emod-api 1.21.1 Adding emod-api 1.21.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for bs4==0.0.1 Best match: bs4 0.0.1 Adding bs4 0.0.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for idmtools-platform-comps==1.6.4 Best match: idmtools-platform-comps 1.6.4 Adding idmtools-platform-comps 1.6.4 to easy-install.pth file Installing comps-cli script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for click==7.1.2 Best match: click 7.1.2 Adding click 7.1.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for idmtools-models==1.6.4 Best match: idmtools-models 1.6.4 Adding idmtools-models 1.6.4 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for keyring==23.5.0 Best match: keyring 23.5.0 Adding keyring 23.5.0 to easy-install.pth file Installing keyring script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for gitdb==4.0.9 Best match: gitdb 4.0.9 Adding gitdb 4.0.9 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for certifi==2021.10.8 Best match: certifi 2021.10.8 Adding certifi 2021.10.8 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for urllib3==1.26.8 Best match: urllib3 1.26.8 Adding urllib3 1.26.8 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for idna==3.3 Best match: idna 3.3 Adding idna 3.3 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for charset-normalizer==2.0.12 Best match: charset-normalizer 2.0.12 Adding charset-normalizer 2.0.12 to easy-install.pth file Installing normalizer script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for ipython-genutils==0.2.0 Best match: ipython-genutils 0.2.0 Adding ipython-genutils 0.2.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for traitlets==5.1.1 Best match: traitlets 5.1.1 Adding traitlets 5.1.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for jupyter-core==4.9.1 Best match: jupyter-core 4.9.1 Adding jupyter-core 4.9.1 to easy-install.pth file Installing jupyter script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Installing jupyter-migrate script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Installing jupyter-troubleshoot script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for attrs==21.4.0 Best match: attrs 21.4.0 Adding attrs 21.4.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for importlib-resources==5.4.0 Best match: importlib-resources 5.4.0 Adding importlib-resources 5.4.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for pyrsistent==0.18.1 Best match: pyrsistent 0.18.1 Adding pyrsistent 0.18.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for diskcache==5.2.1 Best match: diskcache 5.2.1 Adding diskcache 5.2.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for pygit2==1.4.0 Best match: pygit2 1.4.0 Adding pygit2 1.4.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for more-itertools==8.8.0 Best match: more-itertools 8.8.0 Adding more-itertools 8.8.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for backoff==1.10.0 Best match: backoff 1.10.0 Adding backoff 1.10.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for pandas==1.1.5 Best match: pandas 1.1.5 Adding pandas 1.1.5 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for packaging==20.9 Best match: packaging 20.9 Adding packaging 20.9 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for numpy==1.22.2 Best match: numpy 1.22.2 Adding numpy 1.22.2 to easy-install.pth file Installing f2py script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Installing f2py3 script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Installing f2py3.8 script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for tqdm==4.62.3 Best match: tqdm 4.62.3 Adding tqdm 4.62.3 to easy-install.pth file Installing tqdm script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for pluggy==0.13.1 Best match: pluggy 0.13.1 Adding pluggy 0.13.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for pipreqs==0.4.11 Best match: pipreqs 0.4.11 Adding pipreqs 0.4.11 to easy-install.pth file Installing pipreqs script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for coloredlogs==15.0.1 Best match: coloredlogs 15.0.1 Adding coloredlogs 15.0.1 to easy-install.pth file Installing coloredlogs script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for Pillow==9.0.1 Best match: Pillow 9.0.1 Adding Pillow 9.0.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for python-dateutil==2.8.2 Best match: python-dateutil 2.8.2 Adding python-dateutil 2.8.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for kiwisolver==1.3.2 Best match: kiwisolver 1.3.2 Adding kiwisolver 1.3.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for pyparsing==3.0.7 Best match: pyparsing 3.0.7 Adding pyparsing 3.0.7 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for cycler==0.11.0 Best match: cycler 0.11.0 Adding cycler 0.11.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for fonttools==4.29.1 Best match: fonttools 4.29.1 Adding fonttools 4.29.1 to easy-install.pth file Installing fonttools script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Installing pyftmerge script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Installing pyftsubset script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Installing ttx script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for wheel==0.37.1 Best match: wheel 0.37.1 Adding wheel 0.37.1 to easy-install.pth file Installing wheel script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for six==1.16.0 Best match: six 1.16.0 Adding six 1.16.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for pyproj==3.3.0 Best match: pyproj 3.3.0 Adding pyproj 3.3.0 to easy-install.pth file Installing pyproj script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for prodict==0.8.18 Best match: prodict 0.8.18 Adding prodict 0.8.18 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for geographiclib==1.52 Best match: geographiclib 1.52 Adding geographiclib 1.52 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for sklearn==0.0 Best match: sklearn 0.0 Adding sklearn 0.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for Shapely==1.8.0 Best match: Shapely 1.8.0 Adding Shapely 1.8.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for scipy==1.8.0 Best match: scipy 1.8.0 Adding scipy 1.8.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for lz4==4.0.0 Best match: lz4 4.0.0 Adding lz4 4.0.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for beautifulsoup4==4.10.0 Best match: beautifulsoup4 4.10.0 Adding beautifulsoup4 4.10.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for Jinja2==3.0.3 Best match: Jinja2 3.0.3 Adding Jinja2 3.0.3 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for pytest-lazy-fixture==0.6.3 Best match: pytest-lazy-fixture 0.6.3 Adding pytest-lazy-fixture 0.6.3 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for pyCOMPS==2.5.0 Best match: pyCOMPS 2.5.0 Adding pyCOMPS 2.5.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for SecretStorage==3.3.1 Best match: SecretStorage 3.3.1 Adding SecretStorage 3.3.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for jeepney==0.7.1 Best match: jeepney 0.7.1 Adding jeepney 0.7.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for importlib-metadata==4.11.1 Best match: importlib-metadata 4.11.1 Adding importlib-metadata 4.11.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for smmap==5.0.0 Best match: smmap 5.0.0 Adding smmap 5.0.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for zipp==3.7.0 Best match: zipp 3.7.0 Adding zipp 3.7.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for cached-property==1.5.2 Best match: cached-property 1.5.2 Adding cached-property 1.5.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for cffi==1.15.0 Best match: cffi 1.15.0 Adding cffi 1.15.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for pytz==2021.3 Best match: pytz 2021.3 Adding pytz 2021.3 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for docopt==0.6.2 Best match: docopt 0.6.2 Adding docopt 0.6.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for yarg==0.1.9 Best match: yarg 0.1.9 Adding yarg 0.1.9 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for humanfriendly==10.0 Best match: humanfriendly 10.0 Adding humanfriendly 10.0 to easy-install.pth file Installing humanfriendly script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using 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py.test script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Installing pytest script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for xdg==5.1.1 Best match: xdg 5.1.1 Adding xdg 5.1.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for future==0.18.2 Best match: future 0.18.2 Adding future 0.18.2 to easy-install.pth file Installing futurize script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Installing pasteurize script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for cryptography==36.0.1 Best match: cryptography 36.0.1 Adding cryptography 36.0.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for pycparser==2.21 Best match: pycparser 2.21 Adding pycparser 2.21 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for threadpoolctl==3.1.0 Best match: threadpoolctl 3.1.0 Adding threadpoolctl 3.1.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for joblib==1.1.0 Best match: joblib 1.1.0 Adding joblib 1.1.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for py==1.11.0 Best match: py 1.11.0 Adding py 1.11.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for tomli==2.0.1 Best match: tomli 2.0.1 Adding tomli 2.0.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for iniconfig==1.1.1 Best match: iniconfig 1.1.1 Adding iniconfig 1.1.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Finished processing dependencies for emodpy-malaria==1.1.2 [rtd-command-info] start-time: 2022-02-15T19:19:09.709944Z, end-time: 2022-02-15T19:19:09.782160Z, duration: 0, exit-code: 0 cat docs/conf.py # -*- coding: utf-8 -*- # # Sphinx Demo docs build configuration file, created by # sphinx-quickstart on Fri Aug 26 16:52:16 2016. # # This file is execfile()d with the current directory set to its # containing dir. # # Note that not all possible configuration values are present in this # autogenerated file. # # All configuration values have a default; values that are commented out # serve to show the default. # If extensions (or modules to document with autodoc) are in another directory, # add these directories to sys.path here. If the directory is relative to the # docs root, use os.path.abspath to make it absolute, like shown here. # import os import subprocess import sys import sphinx_rtd_theme import configparser from datetime import datetime from urllib.request import urlretrieve if sys.platform in ["linux", "darwin"]: subprocess.check_output(["make", "generate-api"], cwd=os.path.dirname(os.path.abspath(__file__))) else: subprocess.check_output(["make.bat", "generate-api"], cwd=os.path.dirname(os.path.abspath(__file__))) # Rename "emodpy-malaria" to "API reference" filename = 'modules.rst' # This must match the Makefile with open(filename) as f: # Read existing file lines = f.readlines() lines[0] = "API reference\n" # Blast away the existing heading and replace with this lines[1] = "=============\n" # Ensure the heading is the right length with open(filename, "w") as f: # Write new file f.writelines(lines) # -- General configuration ------------------------------------------------ tags.add('emodpymalaria') # If your docs needs a minimal Sphinx version, state it here. # # needs_sphinx = '1.0' # Add any Sphinx extension module names here, as strings. They can be # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom # ones. extensions = [ 'sphinx.ext.mathjax', 'sphinx.ext.githubpages', 'sphinx.ext.autodoc', 'sphinxcontrib.napoleon', 'sphinx.ext.todo', 'plantweb.directive', 'sphinxcontrib.programoutput', 'sphinx_copybutton', 'sphinx.ext.intersphinx', 'sphinxext.remoteliteralinclude' ] plantuml = 'plantweb' autodoc_default_options = { 'member-order': 'bysource', 'members': None, 'exclude-members': '__all__' } autodoc_mock_imports = [] napoleon_google_docstring = True # napoleon_numpy_docstring = True # Add any paths that contain templates here, relative to this directory. templates_path = ['_templates'] # The suffix(es) of source filenames. # You can specify multiple suffix as a list of string: # # source_suffix = ['.rst', '.md'] source_suffix = '.rst' # The encoding of source files. # # source_encoding = 'utf-8-sig' # The master toctree document. master_doc = 'index' # General information about the project. project = u'emodpy-malaria' copyright = f'1999 - {datetime.today().year}, Bill & Melinda Gates Foundation. All rights reserved.' author = u'Institute for Disease Modeling' # The version info for the project you're documenting, acts as replacement for # |version| and |release|, also used in various other places throughout the # built documents. # # The short X.Y version. #current_path = os.path.dirname(__file__) #version_path = os.path.join(current_path, '..', '.bumpversion.cfg') #config = configparser.ConfigParser() #config.read(version_path) #version = config['bumpversion']['current_version'] # The full version, including alpha/beta/rc tags. # release = u'1.0' # The language for content autogenerated by Sphinx. Refer to docs # for a list of supported languages. # # This is also used if you do content translation via gettext catalogs. # Usually you set "language" from the command line for these cases. language = None # There are two options for replacing |today|: either, you set today to some # non-false value, then it is used: # # today = '' # # Else, today_fmt is used as the format for a strftime call. # # today_fmt = '%B %d, %Y' # List of patterns, relative to source directory, that match files and # directories to ignore when looking for source files. # This patterns also effect to html_static_path and html_extra_path exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store'] # The reST default role (used for this markup: `text`) to use for all # documents. # # default_role = None # If true, '()' will be appended to :func: etc. cross-reference text. # # add_function_parentheses = True # If true, the current module name will be prepended to all description # unit titles (such as .. function::). # # add_module_names = True # If true, sectionauthor and moduleauthor directives will be shown in the # output. They are ignored by default. # # show_authors = False # The name of the Pygments (syntax highlighting) style to use. pygments_style = 'sphinx' # A list of ignored prefixes for module index sorting. # modindex_common_prefix = [] # If true, keep warnings as "system message" paragraphs in the built documents. # keep_warnings = False # If true, `todo` and `todoList` produce output, else they produce nothing. todo_include_todos = False # RST epilog is added to the end of every topic. Useful for replace # directives to use across the docset. rst_epilog = "\n.. include:: /variables.txt" # -- Options for HTML output ---------------------------------------------- # The theme to use for HTML and HTML Help pages. See the docs for # a list of builtin themes. # html_theme = 'sphinx_rtd_theme' # Theme options are theme-specific and customize the look and feel of a theme # further. For a list of options available for each theme, see the # docs. # # # html_theme_options = { # } # Add any paths that contain custom themes here, relative to this directory. html_theme_path = [sphinx_rtd_theme.get_html_theme_path()] # The name for this set of Sphinx documents. # " v docs" by default. # # html_title = u'Sphinx Demo v1.0' # A shorter title for the navigation bar. Default is the same as html_title. # # html_short_title = None # The name of an image file (relative to this directory) to place at the top # of the sidebar. # html_logo = "images/IDM_white.png" # The name of an image file (relative to this directory) to use as a favicon of # the docs. This file should be a Windows icon file (.ico) being 16x16 or 32x32 # pixels large. # html_favicon = "images/favicon.ico" # Add any paths that contain custom static files (such as style sheets) here, # relative to this directory. They are copied after the builtin static files, # so a file named "default.css" will overwrite the builtin "default.css". html_static_path = ['_static'] html_context = { 'css_files': [ '_static/theme_overrides.css', '_static/copy_button.css' ] } html_js_files = ['show_block_by_os.js'] # Add any extra paths that contain custom files (such as robots.txt or # .htaccess) here, relative to this directory. These files are copied # directly to the root of the docs. # # html_extra_path = [] # If not None, a 'Last updated on:' timestamp is inserted at every page # bottom, using the given strftime format. # The empty string is equivalent to '%b %d, %Y'. # # html_last_updated_fmt = None # If true, SmartyPants will be used to convert quotes and dashes to # typographically correct entities. # # html_use_smartypants = True # Custom sidebar templates, maps document names to template names. # # html_sidebars = {} # Additional templates that should be rendered to pages, maps page names to # template names. # # html_additional_pages = {} # If false, no module index is generated. # # html_domain_indices = True # If false, no index is generated. # # html_use_index = True # If true, the index is split into individual pages for each letter. # # html_split_index = False # If true, links to the reST sources are added to the pages. # html_show_sourcelink = False # If true, "Created using Sphinx" is shown in the HTML footer. Default is True. # html_show_sphinx = False # If true, "(C) Copyright ..." is shown in the HTML footer. Default is True. # # html_show_copyright = True # If true, an OpenSearch description file will be output, and all pages will # contain a tag referring to it. The value of this option must be the # base URL from which the finished HTML is served. # html_use_opensearch = 'www.idmod.org/docs/' # This is the file name suffix for HTML files (e.g. ".xhtml"). # html_file_suffix = None # Language to be used for generating the HTML full-text search index. # Sphinx supports the following languages: # 'da', 'de', 'en', 'es', 'fi', 'fr', 'hu', 'it', 'ja' # 'nl', 'no', 'pt', 'ro', 'ru', 'sv', 'tr', 'zh' # # html_search_language = 'en' # A dictionary with options for the search language support, empty by default. # 'ja' uses this config value. # 'zh' user can custom change `jieba` dictionary path. # # html_search_options = {'type': 'default'} # The name of a javascript file (relative to the configuration directory) that # implements a search results scorer. If empty, the default will be used. # # html_search_scorer = 'scorer.js' # Output file base name for HTML help builder. htmlhelp_basename = 'emodpy-malaria' # -- Options for LaTeX output --------------------------------------------- latex_elements = { # The paper size ('letterpaper' or 'a4paper'). # # 'papersize': 'letterpaper', # The font size ('10pt', '11pt' or '12pt'). # # 'pointsize': '10pt', # Additional stuff for the LaTeX preamble. # # 'preamble': '', # Latex figure (float) alignment # # 'figure_align': 'htbp', } # Grouping the document tree into LaTeX files. List of tuples # (source start file, target name, title, # author, documentclass [howto, manual, or own class]). latex_documents = [ (master_doc, 'emodpy-malaria-docs.tex', u'emodpy-malaria', u'Institute for Disease Modeling', 'manual'), ] # The name of an image file (relative to this directory) to place at the top of # the title page. # # latex_logo = None # For "manual" documents, if this is true, then toplevel headings are parts, # not chapters. # # latex_use_parts = False # If true, show page references after internal links. # # latex_show_pagerefs = False # If true, show URL addresses after external links. # # latex_show_urls = False # Documents to append as an appendix to all manuals. # # latex_appendices = [] # It false, will not define \strong, \code, itleref, \crossref ... but only # \sphinxstrong, ..., \sphinxtitleref, ... To help avoid clash with user added # packages. # # latex_keep_old_macro_names = True # If false, no module index is generated. # # latex_domain_indices = True # -- Options for manual page output --------------------------------------- # One entry per manual page. List of tuples # (source start file, name, description, authors, manual section). man_pages = [ (master_doc, 'emodpy-malaria-docs', u'emodpy-malaria', [author], 1) ] # If true, show URL addresses after external links. # man_show_urls = True # -- Options for Texinfo output ------------------------------------------- # Grouping the document tree into Texinfo files. List of tuples # (source start file, target name, title, author, # dir menu entry, description, category) texinfo_documents = [ (master_doc, 'emodpy-malaria-docs', u'emodpy-malaria', author, 'Institute for Disease Modeling', 'How to use emodpy for malaria simulations.', 'Miscellaneous'), ] # Documents to append as an appendix to all manuals. # # texinfo_appendices = [] # If false, no module index is generated. # # texinfo_domain_indices = True # How to display URL addresses: 'footnote', 'no', or 'inline'. # # texinfo_show_urls = 'footnote' # If true, do not generate a @detailmenu in the "Top" node's menu. # # texinfo_no_detailmenu = False # Example configuration for intersphinx: refer to the Python standard library. intersphinx_mapping = {'python': ('https://docs.python.org/3', None), 'emod_api': ('https://docs.idmod.org/projects/emod-api/en/latest/', None), 'emodpy': ('https://docs.idmod.org/projects/emodpy/en/latest/', None), 'idmtools': ('https://docs.idmod.org/projects/idmtools/en/latest/', None), 'emod-malaria': ('https://docs.idmod.org/projects/emod-malaria/en/latest/', None), 'pycomps': ('https://docs.idmod.org/projects/pycomps/en/latest/', None) } ########################################################################### # auto-created readthedocs.org specific configuration # ########################################################################### # # The following code was added during an automated build on readthedocs.org # It is auto created and injected for every build. The result is based on the # conf.py.tmpl file found in the readthedocs.org codebase: # https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl # # Note: this file shouldn't rely on extra dependencies. import importlib import sys import os.path # Borrowed from six. PY3 = sys.version_info[0] == 3 string_types = str if PY3 else basestring from sphinx import version_info # Get suffix for proper linking to GitHub # This is deprecated in Sphinx 1.3+, # as each page can have its own suffix if globals().get('source_suffix', False): if isinstance(source_suffix, string_types): SUFFIX = source_suffix elif isinstance(source_suffix, (list, tuple)): # Sphinx >= 1.3 supports list/tuple to define multiple suffixes SUFFIX = source_suffix[0] elif isinstance(source_suffix, dict): # Sphinx >= 1.8 supports a mapping dictionary for multiple suffixes SUFFIX = list(source_suffix.keys())[0] # make a ``list()`` for py2/py3 compatibility else: # default to .rst SUFFIX = '.rst' else: SUFFIX = '.rst' # Add RTD Static Path. Add to the end because it overwrites previous files. if not 'html_static_path' in globals(): html_static_path = [] if os.path.exists('_static'): html_static_path.append('_static') # Add RTD Theme only if they aren't overriding it already using_rtd_theme = ( ( 'html_theme' in globals() and html_theme in ['default'] and # Allow people to bail with a hack of having an html_style 'html_style' not in globals() ) or 'html_theme' not in globals() ) if using_rtd_theme: theme = importlib.import_module('sphinx_rtd_theme') html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} if 'html_theme_path' in globals(): html_theme_path.append(theme.get_html_theme_path()) else: html_theme_path = [theme.get_html_theme_path()] if globals().get('websupport2_base_url', False): websupport2_base_url = 'https://readthedocs.com/websupport' websupport2_static_url = 'https://assets.readthedocs.com/' #Add project information to the template context. context = { 'using_theme': using_rtd_theme, 'html_theme': html_theme, 'current_version': "latest", 'version_slug': "latest", 'MEDIA_URL': "https://media.readthedocs.com/media/", 'STATIC_URL': "https://assets.readthedocs.com/", 'PRODUCTION_DOMAIN': "readthedocs.com", 'versions': [ ("latest", "/en/latest/"), ("stable", "/en/stable/"), ("v1.20.2", "/en/v1.20.2/"), ("v1.1.0", "/en/v1.1.0/"), ("v1.0.10", "/en/v1.0.10/"), ("v1.0.9", "/en/v1.0.9/"), ("v1.0.2", "/en/v1.0.2/"), ("v0.0.61", "/en/v0.0.61/"), ("v0.0.50", "/en/v0.0.50/"), ("0.0.50", "/en/0.0.50/"), ("v0.0.48", "/en/v0.0.48/"), ("v0.0.45", "/en/v0.0.45/"), ("v0.0.44", "/en/v0.0.44/"), ("v0.0.29", "/en/v0.0.29/"), ("v0.0.18", "/en/v0.0.18/"), ], 'downloads': [ ("pdf", "//docs.idmod.org/_/downloads/emodpy-malaria/en/latest/pdf/"), ("html", "//docs.idmod.org/_/downloads/emodpy-malaria/en/latest/htmlzip/"), ], 'subprojects': [ ], 'slug': 'institute-for-disease-modeling-emodpy-malaria', 'name': u'emodpy-malaria', 'rtd_language': u'en', 'programming_language': u'words', 'canonical_url': 'https://docs.idmod.org/projects/emodpy-malaria/en/latest/', 'analytics_code': 'UA-87656833-3', 'single_version': False, 'conf_py_path': '/docs/', 'api_host': 'https://readthedocs.com', 'github_user': 'InstituteforDiseaseModeling', 'proxied_api_host': '/_', 'github_repo': 'emodpy-malaria', 'github_version': 'main', 'display_github': True, 'bitbucket_user': 'None', 'bitbucket_repo': 'None', 'bitbucket_version': 'main', 'display_bitbucket': False, 'gitlab_user': 'None', 'gitlab_repo': 'None', 'gitlab_version': 'main', 'display_gitlab': False, 'READTHEDOCS': True, 'using_theme': (html_theme == "default"), 'new_theme': (html_theme == "sphinx_rtd_theme"), 'source_suffix': SUFFIX, 'ad_free': False, 'docsearch_disabled': False, 'user_analytics_code': 'UA-87656833-3', 'global_analytics_code': 'UA-17997319-2', 'commit': '5f7a999e', } # For sphinx >=1.8 we can use html_baseurl to set the canonical URL. # https://www.sphinx-doc.org/en/master/usage/configuration.html#confval-html_baseurl if version_info >= (1, 8): if not globals().get('html_baseurl'): html_baseurl = context['canonical_url'] context['canonical_url'] = None if 'html_context' in globals(): html_context.update(context) else: html_context = context # Add custom RTD extension if 'extensions' in globals(): # Insert at the beginning because it can interfere # with other extensions. # See https://github.com/rtfd/readthedocs.org/pull/4054 extensions.insert(0, "readthedocs_ext.readthedocs") else: extensions = ["readthedocs_ext.readthedocs"] # Add External version warning banner to the external version documentation if 'branch' == 'external': extensions.insert(1, "readthedocs_ext.external_version_warning") readthedocs_vcs_url = 'None' readthedocs_build_url = 'https://readthedocs.com/projects/institute-for-disease-modeling-emodpy-malaria/builds/854970/' project_language = 'en' # User's Sphinx configurations language_user = globals().get('language', None) latex_engine_user = globals().get('latex_engine', None) latex_elements_user = globals().get('latex_elements', None) # Remove this once xindy gets installed in Docker image and XINDYOPS # env variable is supported # https://github.com/rtfd/readthedocs-docker-images/pull/98 latex_use_xindy = False chinese = any([ language_user in ('zh_CN', 'zh_TW'), project_language in ('zh_CN', 'zh_TW'), ]) japanese = any([ language_user == 'ja', project_language == 'ja', ]) if chinese: latex_engine = latex_engine_user or 'xelatex' latex_elements_rtd = { 'preamble': '\\usepackage[UTF8]{ctex}\n', } latex_elements = latex_elements_user or latex_elements_rtd elif japanese: latex_engine = latex_engine_user or 'platex' # Make sure our build directory is always excluded exclude_patterns = globals().get('exclude_patterns', []) exclude_patterns.extend(['_build']) [rtd-command-info] start-time: 2022-02-15T19:19:09.994334Z, end-time: 2022-02-15T19:19:17.941527Z, duration: 7, exit-code: 0 python -m sphinx -T -E -W --keep-going -b html -d _build/doctrees -D language=en . _build/html Running Sphinx v3.3.1 rm: cannot remove 'modules.rst': No such file or directory make: [generate-api] Error 1 (ignored) loading translations [en]... done making output directory... done loading intersphinx inventory from https://docs.python.org/3/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emod-api/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emodpy/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/idmtools/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emod-malaria/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/pycomps/en/latest/objects.inv... building [mo]: targets for 0 po files that are out of date building [html]: targets for 33 source files that are out of date updating environment: [new config] 33 added, 0 changed, 0 removed reading sources... [ 3%] emodpy_malaria reading sources... [ 6%] emodpy_malaria.demographics reading sources... [ 9%] emodpy_malaria.demographics.MalariaDemographics reading sources... [ 12%] emodpy_malaria.interventions reading sources... [ 15%] emodpy_malaria.interventions.bednet reading sources... [ 18%] emodpy_malaria.interventions.common reading sources... [ 21%] emodpy_malaria.interventions.community_health_worker reading sources... [ 24%] emodpy_malaria.interventions.diag_survey reading sources... [ 27%] emodpy_malaria.interventions.drug reading sources... [ 30%] emodpy_malaria.interventions.drug_campaign reading sources... [ 33%] emodpy_malaria.interventions.inputeir reading sources... [ 36%] emodpy_malaria.interventions.irs reading sources... [ 39%] emodpy_malaria.interventions.ivermectin reading sources... [ 42%] emodpy_malaria.interventions.larvicide reading sources... [ 45%] emodpy_malaria.interventions.mosquitorelease reading sources... 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[rtd-command-info] start-time: 2022-02-15T19:19:18.136374Z, end-time: 2022-02-15T19:19:25.230410Z, duration: 7, exit-code: 0 python -m sphinx -T -E -W --keep-going -b readthedocssinglehtmllocalmedia -d _build/doctrees -D language=en . _build/localmedia Running Sphinx v3.3.1 loading translations [en]... done making output directory... done loading intersphinx inventory from https://docs.python.org/3/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emod-api/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emodpy/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/idmtools/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emod-malaria/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/pycomps/en/latest/objects.inv... building [mo]: targets for 0 po files that are out of date building [readthedocssinglehtmllocalmedia]: all documents updating environment: [new config] 33 added, 0 changed, 0 removed reading sources... 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[100%] modules looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done assembling single document... installation installation-basic modules emodpy_malaria emodpy_malaria.demographics emodpy_malaria.demographics.MalariaDemographics emodpy_malaria.interventions emodpy_malaria.interventions.bednet emodpy_malaria.interventions.common emodpy_malaria.interventions.community_health_worker emodpy_malaria.interventions.diag_survey emodpy_malaria.interventions.drug emodpy_malaria.interventions.drug_campaign emodpy_malaria.interventions.inputeir emodpy_malaria.interventions.irs emodpy_malaria.interventions.ivermectin emodpy_malaria.interventions.larvicide emodpy_malaria.interventions.mosquitorelease emodpy_malaria.interventions.outbreak emodpy_malaria.interventions.outdoorrestkill emodpy_malaria.interventions.scale_larval_habitats emodpy_malaria.interventions.spacespraying emodpy_malaria.interventions.sugartrap emodpy_malaria.interventions.treatment_seeking emodpy_malaria.interventions.udbednet emodpy_malaria.interventions.vaccine emodpy_malaria.reporters emodpy_malaria.reporters.builtin emodpy_malaria.malaria_config emodpy_malaria.malaria_vector_species_params emodpy_malaria.vector_config faq done writing... done writing additional files... opensearchdone copying static files... done copying extra files... done dumping object inventory... done build succeeded. The HTML page is in _build/localmedia. Updating searchtools for Read the Docs search... [rtd-command-info] start-time: 2022-02-15T19:19:25.434518Z, end-time: 2022-02-15T19:19:28.008313Z, duration: 2, exit-code: 0 python -m sphinx -b latex -D language=en -d _build/doctrees . _build/latex Running Sphinx v3.3.1 loading translations [en]... done making output directory... done loading pickled environment... done building [mo]: targets for 0 po files that are out of date building [latex]: all documents updating environment: 0 added, 1 changed, 0 removed reading sources... [100%] modules looking for now-outdated files... none found pickling environment... done checking consistency... done processing emodpy-malaria-docs.tex... index installation installation-basic modules emodpy_malaria emodpy_malaria.demographics emodpy_malaria.demographics.MalariaDemographics emodpy_malaria.interventions emodpy_malaria.interventions.bednet emodpy_malaria.interventions.common emodpy_malaria.interventions.community_health_worker emodpy_malaria.interventions.diag_survey emodpy_malaria.interventions.drug emodpy_malaria.interventions.drug_campaign emodpy_malaria.interventions.inputeir emodpy_malaria.interventions.irs emodpy_malaria.interventions.ivermectin emodpy_malaria.interventions.larvicide emodpy_malaria.interventions.mosquitorelease emodpy_malaria.interventions.outbreak emodpy_malaria.interventions.outdoorrestkill emodpy_malaria.interventions.scale_larval_habitats emodpy_malaria.interventions.spacespraying emodpy_malaria.interventions.sugartrap emodpy_malaria.interventions.treatment_seeking emodpy_malaria.interventions.udbednet emodpy_malaria.interventions.vaccine emodpy_malaria.reporters emodpy_malaria.reporters.builtin emodpy_malaria.malaria_config emodpy_malaria.malaria_vector_species_params emodpy_malaria.vector_config faq resolving references... done writing... done copying TeX support files... copying TeX support files... done build succeeded. The LaTeX files are in _build/latex. Run 'make' in that directory to run these through (pdf)latex (use `make latexpdf' here to do that automatically). WARNING: Missing searchtools: /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/checkouts/latest/docs/_build/latex/_static/searchtools.js [rtd-command-info] start-time: 2022-02-15T19:19:28.302717Z, end-time: 2022-02-15T19:19:28.372491Z, duration: 0, exit-code: 0 cat latexmkrc $latex = 'latex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $pdflatex = 'pdflatex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $lualatex = 'lualatex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $xelatex = 'xelatex --no-pdf ' . $ENV{'LATEXOPTS'} . ' %O %S'; $makeindex = 'makeindex -s python.ist %O -o %D %S'; add_cus_dep( "glo", "gls", 0, "makeglo" ); sub makeglo { return system( "makeindex -s gglo.ist -o '$_[0].gls' '$_[0].glo'" ); } [rtd-command-info] start-time: 2022-02-15T19:19:28.545006Z, end-time: 2022-02-15T19:19:31.903374Z, duration: 3, exit-code: 0 latexmk -r latexmkrc -pdf -f -dvi- -ps- -jobname=institute-for-disease-modeling-emodpy-malaria -interaction=nonstopmode Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 1, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 2, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 3, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 4, chunk 1. Subroutine makeglo redefined at (eval 11) line 7, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 1, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 2, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 3, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 4, chunk 1. Latexmk: This is Latexmk, John Collins, 1 January 2015, version: 4.41. File::Glob::glob() will disappear in perl 5.30. Use File::Glob::bsd_glob() instead. at /usr/bin/latexmk line 7482. Rule 'pdflatex': Rules & subrules not known to be previously run: pdflatex Rule 'pdflatex': The following rules & subrules became out-of-date: 'pdflatex' ------------ Run number 1 of rule 'pdflatex' ------------ ------------ Running 'pdflatex -interaction=nonstopmode -recorder --jobname="institute-for-disease-modeling-emodpy-malaria" "emodpy-malaria-docs.tex"' ------------ Latexmk: applying rule 'pdflatex'... This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./emodpy-malaria-docs.tex LaTeX2e <2017-04-15> Babel <3.18> and hyphenation patterns for 84 language(s) loaded. 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(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd)<><><><> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}] [2] [1] [2] [1] [2] Chapter 1. LaTeX Warning: Hyper reference `installation-basic::doc' on page 3 undefined on input line 114. (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) [3] [4] Chapter 2. 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[7] Underfull \hbox (badness 10000) in paragraph at lines 509--509 \T1/ptm/m/it/10 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 block-ing_decay_rate: Underfull \hbox (badness 10000) in paragraph at lines 509--509 [][]\T1/ptm/m/it/10 float[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 block- Underfull \hbox (badness 10000) in paragraph at lines 509--509 [][]\T1/ptm/m/it/10 float[][] = 0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 509--509 \T1/ptm/m/it/10 killing_predecay_duration: Underfull \hbox (badness 10000) in paragraph at lines 509--509 [][]\T1/ptm/m/it/10 int[][] = 1460\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 509--509 \T1/ptm/m/it/10 pelling_decay_rate: Underfull \hbox (badness 10000) in paragraph at lines 509--509 [][]\T1/ptm/m/it/10 float[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 509--509 \T1/ptm/m/it/10 pelling_predecay_duration: Underfull \hbox (badness 10000) in paragraph at lines 509--509 [][]\T1/ptm/m/it/10 int[][] = 365\T1/ptm/m/n/10 , \T1/ptm/m/it/10 us- Underfull \hbox (badness 10000) in paragraph at lines 509--509 \T1/ptm/m/it/10 us-age_predecay_duration: Underfull \hbox (badness 10000) in paragraph at lines 534--534 [][]\T1/ptm/m/it/10 float[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 block-ing_pre decay_duration: Underfull \hbox (badness 10000) in paragraph at lines 534--534 [][]\T1/ptm/m/it/10 int[][] = 365\T1/ptm/m/n/10 , \T1/ptm/m/it/10 killing_decay _rate: [][]float[][] Underfull \hbox (badness 10000) in paragraph at lines 534--534 \T1/ptm/m/it/10 = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 killing_predecay_duration: [][]int[][] Underfull \hbox (badness 10000) in paragraph at lines 534--534 \T1/ptm/m/it/10 = 365\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-pelling_decay_rate: [] []float[][] = Underfull \hbox (badness 10000) in paragraph at lines 534--534 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-pelling_predecay_duration: [][]int[][] = Underfull \hbox (badness 5091) in paragraph at lines 534--534 \T1/ptm/m/it/10 365\T1/ptm/m/n/10 , \T1/ptm/m/it/10 us-age_decay_rate: [][]floa t[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 us- [8] Underfull \hbox (badness 10000) in paragraph at lines 611--611 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age=1.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 611--611 \T1/ptm/m/it/10 block-ing_eff=1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 killing_eff=1\T 1/ptm/m/n/10 , \T1/ptm/m/it/10 re- [9] Underfull \hbox (badness 10000) in paragraph at lines 654--654 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day\T1/ptm/m/n/10 , LaTeX Warning: Hyper reference `emodpy_malaria.interventions.bednet:emodpy_mala ria.interventions.bednet.BednetIntervention' on page 10 undefined on input line 680. 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in paragraph at lines 767--771 \T1/ptm/m/n/10 ex-am-ple, \T1/pcr/m/n/10 [{"coverage":1,"min": 1, "max": 10}, { "coverage":1, Underfull \hbox (badness 10000) in paragraph at lines 767--771 \T1/pcr/m/n/10 "min": 11, "max": 50},{ "coverage":0.5, "birth":"birth", [11] Underfull \hbox (badness 10000) in paragraph at lines 829--839 \T1/ptm/m/n/10 camp = DTK-Con-fig-Builder.from_defaults(sim_example) cov-er-age _by_ages = [{^^Pcov-er-age^^Q: 1, Underfull \hbox (badness 10000) in paragraph at lines 829--839 \T1/ptm/m/n/10 ^^Pmin^^Q: 1, ^^Pmax^^Q: 10}, {^^Pcov-er-age^^Q: 0.75, ^^Pmin^^Q : 11, ^^Pmax^^Q: 60}] add_ITN(camp, Underfull \hbox (badness 10000) in paragraph at lines 829--839 \T1/ptm/m/n/10 start=1, cov-er-age_by_ages, nodeIDs=[2, 5, 7, 21], node_propert y_restrictions=[{^^PPlace^^Q: ^^PUr- Underfull \hbox (badness 10000) in paragraph at lines 829--839 \T1/ptm/m/n/10 ban^^Q}], ind_property_restrictions=[{^^PBiting_Risk^^Q: ^^PHigh ^^Q], trig-gered_campaign_delay=14, trig- [12] Underfull 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(64.85487pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (153.19351pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 node_property_restrictions: Overfull \hbox (53.47458pt too wide) in paragraph at lines 961--961 [][]\T1/ptm/m/it/10 list[][] Overfull \hbox (47.99501pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 = Overfull \hbox (64.85487pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (56.0448pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 tar- Overfull \hbox (95.93463pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 get_age_min: Overfull \hbox (51.8048pt too wide) in paragraph at lines 961--961 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (47.99501pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 = Overfull \hbox (48.74501pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , Overfull \hbox (56.0448pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 tar- Overfull \hbox (97.59468pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 get_age_max: Overfull \hbox (51.8048pt too wide) in paragraph at lines 961--961 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (47.99501pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 = Overfull \hbox (58.74501pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 125\T1/ptm/m/n/10 , Overfull \hbox (56.0448pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 tar- Overfull \hbox (89.3646pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 get_gender: Overfull \hbox (51.80469pt too wide) in paragraph at lines 961--961 [][]\T1/ptm/m/it/10 str[][] Overfull \hbox (47.99501pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 = Overfull \hbox (59.69456pt too wide) in paragraph at lines 961--961 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 All\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (55.13475pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 ini- Overfull \hbox (92.9145pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 tial_amount: Overfull \hbox (51.8048pt too wide) in paragraph at lines 961--961 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (47.99501pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 = Overfull \hbox (48.74501pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 6\T1/ptm/m/n/10 , Overfull \hbox (128.46431pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 amount_in_shipment: Overfull \hbox (51.8048pt too wide) in paragraph at lines 961--961 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (47.99501pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 = Overfull \hbox (93.74501pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 2147480000\T1/ptm/m/n/10 , Overfull \hbox (145.67392pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 days_between_shipments: Overfull \hbox (59.0249pt too wide) in paragraph at lines 961--961 [][]\T1/ptm/m/it/10 float[][] Overfull \hbox (47.99501pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 = Overfull \hbox (48.74501pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 7\T1/ptm/m/n/10 , Overfull \hbox (54.57497pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 du- Overfull \hbox (53.31496pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 ra- Overfull \hbox (60.13475pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 tion: Overfull \hbox (59.0249pt too wide) in paragraph at lines 961--961 [][]\T1/ptm/m/it/10 float[][] Overfull \hbox (47.99501pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 = Overfull \hbox (97.43495pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 3.40282e+38\T1/ptm/m/n/10 , Overfull \hbox (52.35486pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 in- Overfull \hbox (55.48474pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 ter- Overfull \hbox (58.45485pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 ven- Overfull \hbox (89.57469pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 tion_config: Overfull \hbox (55.68495pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 any Overfull \hbox (47.99501pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 = Overfull \hbox (64.85487pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (147.144pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 max_distributed_per_day: Overfull \hbox (51.8048pt too wide) in paragraph at lines 961--961 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (47.99501pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 = Overfull \hbox (93.74501pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 2147480000\T1/ptm/m/n/10 , Overfull \hbox (86.5846pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 max_stock: Overfull \hbox (51.8048pt too wide) in paragraph at lines 961--961 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (47.99501pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 = Overfull \hbox (93.74501pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 2147480000\T1/ptm/m/n/10 , Overfull \hbox (61.80467pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 wait- Overfull \hbox (88.46458pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 ing_period: Overfull \hbox (51.8048pt too wide) in paragraph at lines 961--961 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (47.99501pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 = Overfull \hbox (52.24501pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 0\T1/pcr/m/n/10 ) [14] Overfull \vbox (355.66753pt too high) has occurred while \output is active [15] [16] Overfull \hbox (31.21352pt too wide) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 tsteps_btwn_repetitions: Underfull \hbox (badness 10000) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 get: [][]ob-ject[][] Underfull \hbox (badness 10000) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Ev-ery-one\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 6364) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 start_day: [][]int[][] Underfull \hbox (badness 5203) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 di-ag-nos- Overfull \hbox (63.55446pt too wide) in paragraph at lines 1050--1050 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 BLOOD_SMEAR_PARASITES\TS1/ptm/m/it/10 '\T1/pt m/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 di-ag-nos- Underfull \hbox (badness 10000) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 tic_threshold: Underfull \hbox (badness 10000) in paragraph at lines 1050--1050 [][]\T1/ptm/m/it/10 float[][] = 40\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 mea-sure- Overfull \hbox (1.01384pt too wide) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 ment_sensitivity: Underfull \hbox (badness 10000) in paragraph at lines 1050--1050 [][]\T1/ptm/m/it/10 float[][] = 0.1\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 event_name: Underfull \hbox (badness 10000) in paragraph at lines 1050--1050 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Di-ag- Underfull \hbox (badness 10000) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 nos-tic Sur-vey\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 6364) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 node_ids: [][]list[][] Overfull \hbox (27.58405pt too wide) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 tive_diagnosis_configs: Underfull \hbox (badness 10000) in paragraph at lines 1050--1050 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 neg-a- Overfull \hbox (27.58405pt too wide) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 tive_diagnosis_configs: Overfull \hbox (6.95406pt too wide) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 ceived_test_event: Underfull \hbox (badness 10000) in paragraph at lines 1050--1050 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Re- Underfull \hbox (badness 10000) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 ceived_Test\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 IP_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1050--1050 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 NP_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1050--1050 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 dis-qual-i-fy- Underfull \hbox (badness 10000) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 ing_properties: Overfull \hbox (9.814pt too wide) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 ger_condition_list: Underfull \hbox (badness 10000) in paragraph at lines 1050--1050 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 lis-ten- Underfull \hbox (badness 10000) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 ing_duration: Overfull \hbox (29.97432pt too wide) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 gered_campaign_delay: Underfull \hbox (badness 10000) in paragraph at lines 1050--1050 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , Overfull \hbox (47.68343pt too wide) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 check_eligibility_at_trigger: Overfull \hbox (9.71407pt too wide) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 pire_recent_drugs: LaTeX Warning: Hyper reference `emodpy_malaria.interventions.common:emodpy_mala ria.interventions.common.MalariaDiagnostic' on page 17 undefined on input line 1053. [17] Underfull \hbox (badness 10000) in paragraph at lines 1083--1086 []\T1/pcr/b/n/10 diagnostic_type \T1/ptm/m/n/10 ^^U Type of malaria di-ag-nos-t ic used. De-fault is Underfull \hbox (badness 10000) in paragraph at lines 1125--1128 []\T1/ptm/m/n/10 In ga-me-to-cytes/microliter, use mea-sure- LaTeX Warning: Hyper reference `emodpy_malaria.interventions.common:emodpy_mala ria.interventions.common.MalariaDiagnostic' on page 18 undefined on input line 1149. Underfull \hbox (badness 10000) in paragraph at lines 1148--1150 []\T1/pcr/b/n/10 measurement_sensitivity \T1/ptm/m/n/10 ^^U Set-ting for \T1/pt m/b/n/10 Mea-sure-ment_Sensitivity \T1/ptm/m/n/10 in [18] Underfull \hbox (badness 10000) in paragraph at lines 1171--1176 []\T1/pcr/b/n/10 IP_restrictions \T1/ptm/m/n/10 ^^U List of In-di-vid-u-al-Prop -erty key:value pairs that Underfull \hbox (badness 10000) in paragraph at lines 1171--1176 \T1/ptm/m/n/10 in-di-vid-u-als must have to re-ceive the di-ag-nos-tic in-ter-v en-tion. For Underfull \hbox (badness 10000) in paragraph at lines 1171--1176 \T1/ptm/m/n/10 ex-am-ple, \T1/pcr/m/n/10 [{"IndividualProperty1":"PropertyValue 1"}, Underfull \hbox (badness 10000) in paragraph at lines 1178--1183 []\T1/pcr/b/n/10 NP_restrictions \T1/ptm/m/n/10 ^^U List of Node-Prop-erty key: value pairs Underfull \hbox (badness 10000) in paragraph at lines 1178--1183 \T1/ptm/m/n/10 that nodes must have to re-ceive the di-ag-nos-tic in-ter-ven-ti on. Underfull \hbox (badness 10000) in paragraph at lines 1178--1183 \T1/ptm/m/n/10 For ex-am-ple, \T1/pcr/m/n/10 [{"NodeProperty1":"PropertyValue1" }, Underfull \hbox (badness 10000) in paragraph at lines 1185--1189 []\T1/pcr/b/n/10 disqualifying_properties \T1/ptm/m/n/10 ^^U List of In-di-vid- u-al-Prop-erty Underfull \hbox (badness 10000) in paragraph at lines 1185--1189 \T1/ptm/m/n/10 key:value pairs that cause an in-ter-ven-tion to be aborted. For ex- Underfull \hbox (badness 10000) in paragraph at lines 1185--1189 \T1/ptm/m/n/10 am-ple, \T1/pcr/m/n/10 [{"IndividualProperty1":"PropertyValue1"} , Underfull \hbox (badness 10000) in paragraph at lines 1208--1211 []\T1/pcr/b/n/10 expire_recent_drugs \T1/ptm/m/n/10 ^^U Adds \T1/pcr/m/n/10 [{" DrugStatus:None"}] \T1/ptm/m/n/10 to \T1/ptm/b/n/10 Prop- [19] Underfull \hbox (badness 10000) in paragraph at lines 1297--1297 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1297--1297 \T1/ptm/m/it/10 drug_code: Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cam- Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 paign_type: Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 MDA\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 6775) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_days: Overfull \hbox (19.21352pt too wide) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 tsteps_btwn_repetitions: Underfull \hbox (badness 7344) in paragraph at lines 1328--1328 [][]\T1/ptm/m/it/10 int[][] = 60\T1/ptm/m/n/10 , \T1/ptm/m/it/10 di-ag- Overfull \hbox (51.55446pt too wide) in paragraph at lines 1328--1328 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 BLOOD_SMEAR_PARASITES\TS1/ptm/m/it/10 '\T1/pt m/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 di-ag-nos- Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 = 40\T1/ptm/m/n/10 , \T1/ptm/m/it/10 mea-sure- Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 ment_sensitivity: Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 [][]\T1/ptm/m/it/10 float[][] = 0.1\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 fmda_radius: Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , Overfull \hbox (6.22408pt too wide) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 node_selection_type: Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 DIS- Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 TANCE_ONLY\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 trig-ger_coverage: Underfull \hbox (badness 5667) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 balls: [][]int[][] = 0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 treat-ment_delay: Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 trig- Overfull \hbox (17.97432pt too wide) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 gered_campaign_delay: Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 tar-get_group: Overfull \hbox (33.88365pt too wide) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 drug_ineligibility_duration: Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , Overfull \hbox (33.19351pt too wide) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Overfull \hbox (26.53346pt too wide) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 dis-qual-i-fy- Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 ing_properties: Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 ger_condition_list: Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 ten-ing_duration: Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 ent_drug_configs: Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 get_residents_only: Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 [][]\T1/ptm/m/it/10 int[][] = 1\T1/ptm/m/n/10 , Overfull \hbox (35.68343pt too wide) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 check_eligibility_at_trigger: Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 [][]\T1/ptm/m/it/10 bool[][] = Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 False\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-ceiv- Overfull \hbox (144.47322pt too wide) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 ing_drugs_event_name=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Received _Campaign_Drugs\TS1/ptm/m/it/10 '\T1/pcr/m/n/10 ) [20] [21] [22] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pcr.fd) Underfull \hbox (badness 10000) in paragraph at lines 1479--1482 []\T1/pcr/b/n/10 ind_property_restrictions \T1/ptm/m/n/10 ^^U The set-ting for \T1/ptm/b/n/10 Prop- Underfull \hbox (badness 10000) in paragraph at lines 1524--1524 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_days: [][]list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1524--1524 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age: [][]float[][] = Underfull \hbox (badness 10000) in paragraph at lines 1524--1524 \T1/ptm/m/it/10 1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 drug_configs: [][]list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1524--1524 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-ceiv-ing_drugs_event: Overfull \hbox (57.71327pt too wide) in paragraph at lines 1524--1524 \T1/ptm/m/it/10 emod_api.interventions.common.BroadcastEvent Underfull \hbox (badness 10000) in paragraph at lines 1524--1524 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 rep-e-ti-tions: [][]int[ ][] = Underfull \hbox (badness 10000) in paragraph at lines 1524--1524 \T1/ptm/m/it/10 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tsteps_btwn_repetitions: Underfull \hbox (badness 6348) in paragraph at lines 1524--1524 [][]\T1/ptm/m/it/10 int[][] = 60\T1/ptm/m/n/10 , \T1/ptm/m/it/10 node_ids: [][] list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1524--1524 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ex-pire_recent_drugs: Overfull \hbox (86.50304pt too wide) in paragraph at lines 1524--1524 \T1/ptm/m/it/10 emod_api.interventions.common.PropertyValueChanger Underfull \hbox (badness 10000) in paragraph at lines 1524--1524 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 6032) in paragraph at lines 1524--1524 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1524--1524 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 dis-qual-i- fy- Underfull \hbox (badness 10000) in paragraph at lines 1524--1524 \T1/ptm/m/it/10 ing_properties: [][]list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1524--1524 \T1/ptm/m/it/10 trig-ger_condition_list: [][]list[][] = LaTeX Warning: Hyper reference `emodpy_malaria.interventions.drug_campaign:emod py_malaria.interventions.drug_campaign.add_drug_campaign' on page 23 undefined on input line 1526. [23] Underfull \hbox (badness 10000) in paragraph at lines 1539--1539 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_days: [][]list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1539--1539 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age: [][]float[][] = Underfull \hbox (badness 10000) in paragraph at lines 1539--1539 \T1/ptm/m/it/10 1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 drug_configs: [][]list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1539--1539 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-ceiv-ing_drugs_event: Overfull \hbox (63.71327pt too wide) in paragraph at lines 1539--1539 \T1/ptm/m/it/10 emod_api.interventions.common.BroadcastEvent Underfull \hbox (badness 10000) in paragraph at lines 1539--1539 \T1/ptm/m/it/10 tsteps_btwn_repetitions: [][]int[][] Underfull \hbox (badness 7504) in paragraph at lines 1539--1539 \T1/ptm/m/it/10 = 60\T1/ptm/m/n/10 , \T1/ptm/m/it/10 treat-ment_delay: [][]int[ ][] Underfull \hbox (badness 10000) in paragraph at lines 1539--1539 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 BLOOD_SMEAR_PARASITES\TS1/ptm/m/it/10 '\T1/pt m/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1539--1539 \T1/ptm/m/it/10 40\T1/ptm/m/n/10 , \T1/ptm/m/it/10 mea-sure-ment_sensitivity: Underfull \hbox (badness 6063) in paragraph at lines 1539--1539 [][]\T1/ptm/m/it/10 float[][] = 0.1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 node_ids: [ ][]list[][] Overfull \hbox (92.50304pt too wide) in paragraph at lines 1539--1539 \T1/ptm/m/it/10 emod_api.interventions.common.PropertyValueChanger Underfull \hbox (badness 10000) in paragraph at lines 1539--1539 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1539--1539 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1539--1539 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1539--1539 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar-get_gro up: Underfull \hbox (badness 10000) in paragraph at lines 1539--1539 \T1/ptm/m/it/10 any = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Ev-ery-one\TS1/ptm/m/it /10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 trig- Underfull \hbox (badness 10000) in paragraph at lines 1539--1539 \T1/ptm/m/it/10 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 check_eligibility_at_trigger: LaTeX Warning: Hyper reference `emodpy_malaria.interventions.drug_campaign:emod py_malaria.interventions.drug_campaign.add_drug_campaign' on page 24 undefined on input line 1541. Underfull \hbox (badness 10000) in paragraph at lines 1540--1543 \T1/ptm/m/n/10 Add an MSAT (mass screen-ing and treat-ment) drug in-ter-ven-tio n to your cam-paign. See [24] Underfull \hbox (badness 10000) in paragraph at lines 1554--1554 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_days: [][]list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1554--1554 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 trig-ger_coverage: Underfull \hbox (badness 7221) in paragraph at lines 1554--1554 [][]\T1/ptm/m/it/10 float[][] = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age: [ ][]float[][] Underfull \hbox (badness 7595) in paragraph at lines 1554--1554 \T1/ptm/m/it/10 = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 drug_configs: [][]list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1554--1554 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-ceiv-ing_drugs_event: Overfull \hbox (63.71327pt too wide) in paragraph at lines 1554--1554 \T1/ptm/m/it/10 emod_api.interventions.common.BroadcastEvent Underfull \hbox (badness 10000) in paragraph at lines 1554--1554 \T1/ptm/m/it/10 tsteps_btwn_repetitions: [][]int[][] Underfull \hbox (badness 10000) in paragraph at lines 1554--1554 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 BLOOD_SMEAR_PARASITES\TS1/ptm/m/it/10 '\T1/pt m/m/n/10 , Overfull \hbox (92.50304pt too wide) in paragraph at lines 1554--1554 \T1/ptm/m/it/10 emod_api.interventions.common.PropertyValueChanger Underfull \hbox (badness 10000) in paragraph at lines 1554--1554 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1554--1554 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1554--1554 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1554--1554 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar-get_gro up: Underfull \hbox (badness 10000) in paragraph at lines 1554--1554 \T1/ptm/m/it/10 any = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Ev-ery-one\TS1/ptm/m/it /10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 trig- LaTeX Warning: Hyper reference `emodpy_malaria.interventions.drug_campaign:emod py_malaria.interventions.drug_campaign.add_drug_campaign' on page 25 undefined on input line 1556. Underfull \hbox (badness 7869) in paragraph at lines 1555--1558 \T1/ptm/m/n/10 Add an fMDA (fo-cal mass drug ad-min-is-tra-tion) drug in-ter-ve n-tion to your cam-paign. See Underfull \hbox (badness 10000) in paragraph at lines 1569--1569 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day: [][]int[][] = Underfull \hbox (badness 6141) in paragraph at lines 1569--1569 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age: [][]float[][] = 1 \T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1569--1569 \T1/ptm/m/it/10 re-ceiv-ing_drugs_event: Overfull \hbox (75.71327pt too wide) in paragraph at lines 1569--1569 \T1/ptm/m/it/10 emod_api.interventions.common.BroadcastEvent Overfull \hbox (9.55446pt too wide) in paragraph at lines 1569--1569 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 BLOOD_SMEAR_PARASITES\TS1/ptm/m/it/10 '\T1/pt m/m/n/10 , Overfull \hbox (104.50304pt too wide) in paragraph at lines 1569--1569 \T1/ptm/m/it/10 emod_api.interventions.common.PropertyValueChanger Underfull \hbox (badness 10000) in paragraph at lines 1569--1569 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1569--1569 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1569--1569 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1569--1569 \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1569--1569 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 dis-qual-i- fy- LaTeX Warning: Hyper reference `emodpy_malaria.interventions.drug_campaign:emod py_malaria.interventions.drug_campaign.add_drug_campaign' on page 25 undefined on input line 1571. [25] Underfull \hbox (badness 10000) in paragraph at lines 1584--1584 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day: [][]int[][] = Underfull \hbox (badness 10000) in paragraph at lines 1584--1584 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age: [][]float[][] = 1 \T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1584--1584 \T1/ptm/m/it/10 re-ceiv-ing_drugs_event: Overfull \hbox (69.71327pt too wide) in paragraph at lines 1584--1584 \T1/ptm/m/it/10 emod_api.interventions.common.BroadcastEvent Underfull \hbox (badness 7613) in paragraph at lines 1584--1584 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lis-ten-ing_duration: Underfull \hbox (badness 10000) in paragraph at lines 1584--1584 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 trig-ger_covera ge: Underfull \hbox (badness 10000) in paragraph at lines 1584--1584 \T1/ptm/m/it/10 = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 node_selection_type: Underfull \hbox (badness 10000) in paragraph at lines 1584--1584 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 DIS-TANCE_ONLY\ TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1584--1584 \T1/ptm/m/it/10 node_ids: [][]list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1584--1584 \T1/ptm/m/it/10 ex-pire_recent_drugs: Overfull \hbox (98.50304pt too wide) in paragraph at lines 1584--1584 \T1/ptm/m/it/10 emod_api.interventions.common.PropertyValueChanger Underfull \hbox (badness 10000) in paragraph at lines 1584--1584 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1584--1584 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1584--1584 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1584--1584 \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1584--1584 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 dis-qual-i- fy- LaTeX Warning: Hyper reference `emodpy_malaria.interventions.drug_campaign:emod py_malaria.interventions.drug_campaign.add_drug_campaign' on page 26 undefined on input line 1586. Underfull \hbox (badness 10000) in paragraph at lines 1599--1599 \T1/ptm/m/it/10 TANCE_ONLY\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ev ent_trigger: [26] Underfull \hbox (badness 5756) in paragraph at lines 1631--1631 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 daily_eir: [][]list[][] Underfull \hbox (badness 5091) in paragraph at lines 1665--1665 [][]\T1/ptm/m/it/10 int[][] = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 node_ids: [][]l ist[][] = None\T1/ptm/m/n/10 , [27] Underfull \hbox (badness 10000) in paragraph at lines 1705--1705 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1705--1705 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , [28] Underfull \hbox (badness 10000) in paragraph at lines 1778--1778 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1778--1778 \T1/ptm/m/it/10 start_day: [][]int[][] Underfull \hbox (badness 10000) in paragraph at lines 1778--1778 \T1/ptm/m/it/10 = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er- Overfull \hbox (11.51352pt too wide) in paragraph at lines 1778--1778 \T1/ptm/m/it/10 killing_initial_effect: Underfull \hbox (badness 10000) in paragraph at lines 1778--1778 [][]\T1/ptm/m/it/10 float[][] = 1\T1/ptm/m/n/10 , Overfull \hbox (38.20403pt too wide) in paragraph at lines 1778--1778 \T1/ptm/m/it/10 killing_box_duration_days: Underfull \hbox (badness 10000) in paragraph at lines 1778--1778 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , Overfull \hbox (98.1333pt too wide) in paragraph at lines 1778--1778 \T1/ptm/m/it/10 killing_exponential_decay_constant_days: Underfull \hbox (badness 10000) in paragraph at lines 1778--1778 [][]\T1/ptm/m/it/10 int[][] = 90\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Overfull \hbox (13.73363pt too wide) in paragraph at lines 1778--1778 \T1/ptm/m/it/10 pelling_initial_effect: Underfull \hbox (badness 10000) in paragraph at lines 1778--1778 [][]\T1/ptm/m/it/10 float[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Overfull \hbox (40.42413pt too wide) in paragraph at lines 1778--1778 \T1/ptm/m/it/10 pelling_box_duration_days: Underfull \hbox (badness 10000) in paragraph at lines 1778--1778 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Overfull \hbox (100.35341pt too wide) in paragraph at lines 1778--1778 \T1/ptm/m/it/10 pelling_exponential_decay_constant_days: [29] Underfull \hbox (badness 10000) in paragraph at lines 1838--1838 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day\T1/ptm/m/n /10 , Underfull \hbox (badness 10000) in paragraph at lines 1847--1847 []\T1/ptm/m/it/10 schema_path_container\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1847--1847 [][]\T1/ptm/m/it/10 float[][] = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-mo- Underfull \hbox (badness 10000) in paragraph at lines 1847--1847 \T1/ptm/m/it/10 killing_exponential_decay_rate: Underfull \hbox (badness 5161) in paragraph at lines 1890--1890 \T1/ptm/m/it/10 = 1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 killing_effect: [][]float [][] [30] Underfull \hbox (badness 10000) in paragraph at lines 1919--1921 \T1/ptm/m/n/10 TER_VEGETATION^^Q, ^^PHU-MAN_POPULATION^^Q, ^^PCON-STANT^^Q, ^^P BRACK- Underfull \hbox (badness 10000) in paragraph at lines 1946--1946 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , [31] Underfull \hbox (badness 10000) in paragraph at lines 1963--1963 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1963--1963 \T1/ptm/m/it/10 re-leased_number: Underfull \hbox (badness 5954) in paragraph at lines 1963--1963 [][]\T1/ptm/m/it/10 int[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 1963--1963 \T1/ptm/m/it/10 leased_fraction: Underfull \hbox (badness 10000) in paragraph at lines 1963--1963 \T1/ptm/m/it/10 leased_infectious: Underfull \hbox (badness 10000) in paragraph at lines 1963--1963 [][]\T1/ptm/m/it/10 float[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 1963--1963 \T1/ptm/m/it/10 leased_species: Underfull \hbox (badness 10000) in paragraph at lines 1963--1963 \T1/ptm/m/it/10 re-leased_genome: Underfull \hbox (badness 10000) in paragraph at lines 1963--1963 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1983--1985 []\T1/pcr/b/n/10 released_infectious \T1/ptm/m/n/10 ^^U The frac-tion of vec-to rs re-leased that Underfull \hbox (badness 10000) in paragraph at lines 1983--1985 \T1/ptm/m/n/10 are to be in-fec-tious. One can only use this fea-ture when Overfull \hbox (16.27205pt too wide) in paragraph at lines 1983--1985 \T1/ptm/m/n/10 `Malaria_Model'!='MALARIA_MECHANISTIC_MODEL_WITH_PARASITE_GENETI CS' Underfull \hbox (badness 10000) in paragraph at lines 2009--2009 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Overfull \hbox (16.35448pt too wide) in paragraph at lines 2009--2009 \T1/ptm/m/it/10 start_day: Underfull \hbox (badness 10000) in paragraph at lines 2009--2009 [][]\T1/ptm/m/it/10 int[][] Underfull \hbox (badness 10000) in paragraph at lines 2009--2009 \T1/ptm/m/it/10 = 1\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2009--2009 \T1/ptm/m/it/10 file- Overfull \hbox (2.35487pt too wide) in paragraph at lines 2009--2009 \T1/ptm/m/it/10 None\T1/pcr/m/n/10 ) [32] Underfull \hbox (badness 10000) in paragraph at lines 2035--2035 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2035--2035 \T1/ptm/m/it/10 start_day: [][]int[][] Underfull \hbox (badness 10000) in paragraph at lines 2035--2035 \T1/ptm/m/it/10 = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-mo- Overfull \hbox (2.73457pt too wide) in paragraph at lines 2035--2035 \T1/ptm/m/it/10 graphic_coverage: Overfull \hbox (14.36418pt too wide) in paragraph at lines 2035--2035 \T1/ptm/m/it/10 get_num_individuals: Underfull \hbox (badness 10000) in paragraph at lines 2035--2035 [][]\T1/ptm/m/it/10 int[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2035--2035 \T1/ptm/m/it/10 node_ids: [][]list[][] Overfull \hbox (52.97314pt too wide) in paragraph at lines 2035--2035 \T1/ptm/m/it/10 timesteps_between_repetitions: Underfull \hbox (badness 10000) in paragraph at lines 2035--2035 [][]\T1/ptm/m/it/10 int[][] = 365\T1/ptm/m/n/10 , Overfull \hbox (32.53346pt too wide) in paragraph at lines 2035--2035 \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 2035--2035 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Overfull \hbox (39.19351pt too wide) in paragraph at lines 2035--2035 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 2035--2035 \T1/ptm/m/it/10 get_age_min: Underfull \hbox (badness 10000) in paragraph at lines 2035--2035 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar- Underfull \hbox (badness 10000) in paragraph at lines 2035--2035 \T1/ptm/m/it/10 get_age_max: Underfull \hbox (badness 10000) in paragraph at lines 2035--2035 \T1/ptm/m/it/10 get_gender: Underfull \hbox (badness 5359) in paragraph at lines 2035--2035 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 All\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ig- Underfull \hbox (badness 10000) in paragraph at lines 2035--2035 \T1/ptm/m/it/10 nore_immunity: Underfull \hbox (badness 10000) in paragraph at lines 2035--2035 [][]\T1/ptm/m/it/10 bool[][] = True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2035--2035 \T1/ptm/m/it/10 in-cu-ba- Overfull \hbox (16.02399pt too wide) in paragraph at lines 2035--2035 \T1/ptm/m/it/10 tion_period_override: Underfull \hbox (badness 5893) in paragraph at lines 2059--2061 []\T1/pcr/b/n/10 repetitions \T1/ptm/m/n/10 ^^U The num-ber of times an in-ter- ven-tion is given, used with [33] Overfull \hbox (5.18481pt too wide) in paragraph at lines 2114--2114 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , Overfull \hbox (4.35448pt too wide) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 start_day: Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 de-mo- Overfull \hbox (38.73457pt too wide) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 graphic_coverage: Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 [][]\T1/ptm/m/it/10 float[][] = Overfull \hbox (50.36418pt too wide) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 get_num_individuals: Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 [][]\T1/ptm/m/it/10 int[][] = Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (2.6847pt too wide) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 node_ids: Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 rep-e-ti- Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 tions: Overfull \hbox (88.97314pt too wide) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 timesteps_between_repetitions: Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 [][]\T1/ptm/m/it/10 int[][] Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 = 365\T1/ptm/m/n/10 , Overfull \hbox (68.53346pt too wide) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (75.19351pt too wide) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 tar- Overfull \hbox (17.93463pt too wide) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 get_age_min: Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 [][]\T1/ptm/m/it/10 int[][] = Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar- Overfull \hbox (19.59468pt too wide) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 get_age_max: Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 [][]\T1/ptm/m/it/10 int[][] = Overfull \hbox (11.3646pt too wide) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 get_gender: Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 [][]\T1/ptm/m/it/10 str[][] = Overfull \hbox (26.75435pt too wide) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 nore_immunity: Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 [][]\T1/ptm/m/it/10 bool[][] = Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 in-cu-ba- Overfull \hbox (52.02399pt too wide) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 tion_period_override: Underfull \hbox (badness 5077) in paragraph at lines 2114--2114 [][]\T1/ptm/m/it/10 int[][] = - Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cre- Overfull \hbox (90.54375pt too wide) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 ate_nucleotide_sequence_from: Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 [][]\T1/ptm/m/it/10 str[][] = Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 BAR- Overfull \hbox (33.99452pt too wide) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 CODE_STRING\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 bar- Overfull \hbox (13.79442pt too wide) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 code_string: Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 [][]\T1/ptm/m/it/10 str[][] = Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (52.88371pt too wide) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 drug_resistant_string: Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 [][]\T1/ptm/m/it/10 str[][] = Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (43.23422pt too wide) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 msp_variant_value: Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 [][]\T1/ptm/m/it/10 int[][] = Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (64.34395pt too wide) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 pfemp1_variants_values: Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 bar- Overfull \hbox (155.51305pt too wide) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 code_allele_frequencies_per_genome_location: Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (194.60234pt too wide) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 drug_resistant_allele_frequencies_per_genome_location: Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 [][]\T1/ptm/m/it/10 list[][] = [34] Overfull \vbox (135.66997pt too high) has occurred while \output is active [35] Underfull \hbox (badness 5893) in paragraph at lines 2141--2143 []\T1/pcr/b/n/10 repetitions \T1/ptm/m/n/10 ^^U The num-ber of times an in-ter- ven-tion is given, used with [36] Overfull \hbox (11.18481pt too wide) in paragraph at lines 2230--2230 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , Overfull \hbox (10.35448pt too wide) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 start_day: Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 de-mo- Overfull \hbox (44.73457pt too wide) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 graphic_coverage: Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 [][]\T1/ptm/m/it/10 float[][] Underfull \hbox (badness 8151) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 = 1.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 tar- Overfull \hbox (56.36418pt too wide) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 get_num_individuals: Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 [][]\T1/ptm/m/it/10 int[][] = Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (8.6847pt too wide) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 node_ids: Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 rep-e-ti- Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 tions: Overfull \hbox (94.97314pt too wide) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 timesteps_between_repetitions: Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 [][]\T1/ptm/m/it/10 int[][] = Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 365\T1/ptm/m/n/10 , Overfull \hbox (74.53346pt too wide) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (81.19351pt too wide) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 tar- Overfull \hbox (23.93463pt too wide) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 get_age_min: Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 [][]\T1/ptm/m/it/10 int[][] = Overfull \hbox (25.59468pt too wide) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 get_age_max: Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 [][]\T1/ptm/m/it/10 int[][] = Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 125\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 tar- Overfull \hbox (17.3646pt too wide) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 get_gender: Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 [][]\T1/ptm/m/it/10 str[][] = Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 All\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 ig- Overfull \hbox (32.75435pt too wide) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 nore_immunity: Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 in-cu-ba- Overfull \hbox (58.02399pt too wide) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 tion_period_override: Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 [][]\T1/ptm/m/it/10 int[][] = Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 - 1\T1/ptm/m/n/10 , Overfull \hbox (10.34447pt too wide) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 irbc_type: Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 mi- Overfull \hbox (42.5643pt too wide) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 nor_epitope_type: Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (10.3446pt too wide) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 msp_type: Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 [][]\T1/ptm/m/it/10 int[][] = [37] Overfull \vbox (3.66997pt too high) has occurred while \output is active [38] Underfull \hbox (badness 5893) in paragraph at lines 2257--2259 []\T1/pcr/b/n/10 repetitions \T1/ptm/m/n/10 ^^U The num-ber of times an in-ter- ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 2315--2315 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day: Underfull \hbox (badness 10000) in paragraph at lines 2315--2315 [][]\T1/ptm/m/it/10 int[][] = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-mo- Underfull \hbox (badness 10000) in paragraph at lines 2315--2315 \T1/ptm/m/it/10 graphic_coverage: Underfull \hbox (badness 10000) in paragraph at lines 2315--2315 [][]\T1/ptm/m/it/10 float[][] = 1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar- Underfull \hbox (badness 10000) in paragraph at lines 2315--2315 \T1/ptm/m/it/10 get_num_individuals: Underfull \hbox (badness 10000) in paragraph at lines 2315--2315 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 rep-e- Underfull \hbox (badness 10000) in paragraph at lines 2315--2315 \T1/ptm/m/it/10 ti-tions: [][]int[][] = 1\T1/ptm/m/n/10 , Overfull \hbox (22.97314pt too wide) in paragraph at lines 2315--2315 \T1/ptm/m/it/10 timesteps_between_repetitions: Underfull \hbox (badness 10000) in paragraph at lines 2315--2315 [][]\T1/ptm/m/it/10 int[][] = 365\T1/ptm/m/n/10 , Overfull \hbox (2.53346pt too wide) in paragraph at lines 2315--2315 \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 2315--2315 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Overfull \hbox (9.19351pt too wide) in paragraph at lines 2315--2315 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 2315--2315 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar- Underfull \hbox (badness 10000) in paragraph at lines 2315--2315 \T1/ptm/m/it/10 get_age_min: [][]int[][] = [39] Underfull \hbox (badness 5893) in paragraph at lines 2341--2343 []\T1/pcr/b/n/10 repetitions \T1/ptm/m/n/10 ^^U The num-ber of times an in-ter- ven-tion is given, used with [40] Underfull \hbox (badness 10000) in paragraph at lines 2382--2382 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2382--2382 \T1/ptm/m/it/10 cide_name: Overfull \hbox (29.51352pt too wide) in paragraph at lines 2382--2382 \T1/ptm/m/it/10 killing_initial_effect: Underfull \hbox (badness 10000) in paragraph at lines 2382--2382 [][]\T1/ptm/m/it/10 float[][] = 1\T1/ptm/m/n/10 , Overfull \hbox (32.87419pt too wide) in paragraph at lines 2382--2382 \T1/ptm/m/it/10 killing_box_duration: Underfull \hbox (badness 10000) in paragraph at lines 2382--2382 [][]\T1/ptm/m/it/10 int[][] = 365\T1/ptm/m/n/10 , Overfull \hbox (74.87367pt too wide) in paragraph at lines 2382--2382 \T1/ptm/m/it/10 killing_exponential_decay_rate: Underfull \hbox (badness 10000) in paragraph at lines 2382--2382 [][]\T1/ptm/m/it/10 float[][] = 0\T1/ptm/m/n/10 , Overfull \hbox (59.18481pt too wide) in paragraph at lines 2424--2424 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , Overfull \hbox (55.38477pt too wide) in paragraph at lines 2424--2424 \T1/ptm/m/it/10 df=None\T1/ptm/m/n/10 , Overfull \hbox (58.35448pt too wide) in paragraph at lines 2424--2424 \T1/ptm/m/it/10 start_day: Overfull \hbox (27.8048pt too wide) in paragraph at lines 2424--2424 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (23.99501pt too wide) in paragraph at lines 2424--2424 \T1/ptm/m/it/10 = Overfull \hbox (24.74501pt too wide) in paragraph at lines 2424--2424 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , Overfull \hbox (33.53479pt too wide) in paragraph at lines 2424--2424 \T1/ptm/m/it/10 rep- Overfull \hbox (25.01491pt too wide) in paragraph at lines 2424--2424 \T1/ptm/m/it/10 e- Overfull \hbox (26.13475pt too wide) in paragraph at lines 2424--2424 \T1/ptm/m/it/10 ti- Overfull \hbox (40.02464pt too wide) in paragraph at lines 2424--2424 \T1/ptm/m/it/10 tions: Overfull \hbox (27.8048pt too wide) in paragraph at lines 2424--2424 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (23.99501pt too wide) in paragraph at lines 2424--2424 \T1/ptm/m/it/10 = Overfull \hbox (24.74501pt too wide) in paragraph at lines 2424--2424 \T1/ptm/m/it/10 1\T1/ptm/m/n/10 , Overfull \hbox (142.97314pt too wide) in paragraph at lines 2424--2424 \T1/ptm/m/it/10 timesteps_between_repetitions: Overfull \hbox (27.8048pt too wide) in paragraph at lines 2424--2424 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (23.99501pt too wide) in paragraph at lines 2424--2424 \T1/ptm/m/it/10 = Overfull \hbox (34.74501pt too wide) in paragraph at lines 2424--2424 \T1/ptm/m/it/10 365\T1/ptm/m/n/10 , Overfull \hbox (129.19351pt too wide) in paragraph at lines 2424--2424 \T1/ptm/m/it/10 node_property_restrictions: Overfull \hbox (29.47458pt too wide) in paragraph at lines 2424--2424 [][]\T1/ptm/m/it/10 list[][] Overfull \hbox (23.99501pt too wide) in paragraph at lines 2424--2424 \T1/ptm/m/it/10 = Overfull \hbox (44.35487pt too wide) in paragraph at lines 2424--2424 \T1/ptm/m/it/10 None\T1/pcr/m/n/10 ) [41] [42] Overfull \hbox (71.18481pt too wide) in paragraph at lines 2498--2498 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , Overfull \hbox (70.35448pt too wide) in paragraph at lines 2498--2498 \T1/ptm/m/it/10 start_day: Overfull \hbox (42.3048pt too wide) in paragraph at lines 2498--2498 [][]\T1/ptm/m/it/10 int[][]\T1/ptm/m/n/10 , Overfull \hbox (68.6847pt too wide) in paragraph at lines 2498--2498 \T1/ptm/m/it/10 node_ids: Overfull \hbox (43.97458pt too wide) in paragraph at lines 2498--2498 [][]\T1/ptm/m/it/10 list[][]\T1/ptm/m/n/10 , Overfull \hbox (50.35486pt too wide) in paragraph at lines 2498--2498 \T1/ptm/m/it/10 habi- Overfull \hbox (72.57431pt too wide) in paragraph at lines 2498--2498 \T1/ptm/m/it/10 tat_scales: Overfull \hbox (43.97458pt too wide) in paragraph at lines 2498--2498 [][]\T1/ptm/m/it/10 list[][]\T1/ptm/m/n/10 , Overfull \hbox (45.53479pt too wide) in paragraph at lines 2498--2498 \T1/ptm/m/it/10 rep- Overfull \hbox (37.01491pt too wide) in paragraph at lines 2498--2498 \T1/ptm/m/it/10 e- Overfull \hbox (38.13475pt too wide) in paragraph at lines 2498--2498 \T1/ptm/m/it/10 ti- Overfull \hbox (52.02464pt too wide) in paragraph at lines 2498--2498 \T1/ptm/m/it/10 tions: Overfull \hbox (42.3048pt too wide) in paragraph at lines 2498--2498 [][]\T1/ptm/m/it/10 int[][]\T1/ptm/m/n/10 , Overfull \hbox (154.97314pt too wide) in paragraph at lines 2498--2498 \T1/ptm/m/it/10 timesteps_between_repetitions: Overfull \hbox (42.3048pt too wide) in paragraph at lines 2498--2498 [][]\T1/ptm/m/it/10 int[][]\T1/ptm/m/n/10 , Overfull \hbox (141.19351pt too wide) in paragraph at lines 2498--2498 \T1/ptm/m/it/10 node_property_restrictions: Overfull \hbox (47.47458pt too wide) in paragraph at lines 2498--2498 [][]\T1/ptm/m/it/10 list[][]\T1/pcr/m/n/10 ) Underfull \hbox (badness 5893) in paragraph at lines 2526--2528 []\T1/pcr/b/n/10 repetitions \T1/ptm/m/n/10 ^^U The num-ber of times an in-ter- ven-tion is given, used with [43] Underfull \hbox (badness 10000) in paragraph at lines 2552--2552 \T1/ptm/m/it/10 = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 spray_coverage: Overfull \hbox (5.18481pt too wide) in paragraph at lines 2577--2577 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , Overfull \hbox (4.35448pt too wide) in paragraph at lines 2577--2577 \T1/ptm/m/it/10 start_day: Underfull \hbox (badness 10000) in paragraph at lines 2577--2577 \T1/ptm/m/it/10 file- Underfull \hbox (badness 10000) in paragraph at lines 2577--2577 \T1/ptm/m/it/10 name: Underfull \hbox (badness 10000) in paragraph at lines 2577--2577 [][]\T1/ptm/m/it/10 str[][] = [44] Underfull \hbox (badness 6893) in paragraph at lines 2594--2594 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day: [][]int[] [] = 0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2638--2638 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2658--2658 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Overfull \hbox (10.35448pt too wide) in paragraph at lines 2658--2658 \T1/ptm/m/it/10 start_day: Underfull \hbox (badness 10000) in paragraph at lines 2658--2658 \T1/ptm/m/it/10 tar-gets: Underfull \hbox (badness 10000) in paragraph at lines 2658--2658 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2658--2658 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2658--2658 \T1/ptm/m/it/10 drug: Underfull \hbox (badness 10000) in paragraph at lines 2658--2658 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2658--2658 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (8.6847pt too wide) in paragraph at lines 2658--2658 \T1/ptm/m/it/10 node_ids: Underfull \hbox (badness 10000) in paragraph at lines 2658--2658 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2658--2658 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (74.53346pt too wide) in paragraph at lines 2658--2658 \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 2658--2658 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2658--2658 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (81.88365pt too wide) in paragraph at lines 2658--2658 \T1/ptm/m/it/10 drug_ineligibility_duration: Underfull \hbox (badness 6204) in paragraph at lines 2658--2658 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 du- Underfull \hbox (badness 10000) in paragraph at lines 2658--2658 \T1/ptm/m/it/10 ra-tion: Underfull \hbox (badness 10000) in paragraph at lines 2658--2658 [][]\T1/ptm/m/it/10 int[][] = Underfull \hbox (badness 10000) in paragraph at lines 2658--2658 \T1/ptm/m/it/10 - 1\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2658--2658 \T1/ptm/m/it/10 broad- Overfull \hbox (41.29442pt too wide) in paragraph at lines 2658--2658 \T1/ptm/m/it/10 cast_event_name: Underfull \hbox (badness 10000) in paragraph at lines 2658--2658 [][]\T1/ptm/m/it/10 str[][] = Underfull \hbox (badness 10000) in paragraph at lines 2658--2658 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Re- Overfull \hbox (48.38399pt too wide) in paragraph at lines 2658--2658 \T1/ptm/m/it/10 ceived_Treatment\TS1/ptm/m/it/10 '\T1/pcr/m/n/10 ) [45] Underfull \hbox (badness 10000) in paragraph at lines 2674--2678 []\T1/pcr/b/n/10 of individuals to target with the intervention. Default is Underfull \hbox (badness 10000) in paragraph at lines 2674--2678 \T1/ptm/m/n/10 (\T1/pcr/m/sl/10 properties\T1/ptm/m/n/10 ) ^^U \T1/pcr/m/n/10 [ { "trigger":"NewClinicalCase","coverage":0. Underfull \hbox (badness 10000) in paragraph at lines 2674--2678 \T1/pcr/m/n/10 8,"agemin":15,"agemax":70, "seek":0.4,"rate":0.3}, Underfull \hbox (badness 10000) in paragraph at lines 2674--2678 \T1/pcr/m/n/10 {"trigger":"NewSevereCase","coverage":0.8,"seek":0.6, Underfull \hbox (badness 10000) in paragraph at lines 2692--2693 []\T1/pcr/b/n/10 must have to receive the intervention. For example, Underfull \hbox (badness 10000) in paragraph at lines 2692--2693 \T1/ptm/m/n/10 (\T1/pcr/m/sl/10 individuals\T1/ptm/m/n/10 ) ^^U \T1/pcr/m/n/10 ["IndividualProperty1:PropertyValue1", [46] Underfull \hbox (badness 10000) in paragraph at lines 2722--2722 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day: [][]int[][] = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 dis- Underfull \hbox (badness 10000) in paragraph at lines 2722--2722 \T1/ptm/m/it/10 0.0013698630136986301\T1/ptm/m/n/10 , \T1/ptm/m/it/10 killing_e ff: Underfull \hbox (badness 10000) in paragraph at lines 2722--2722 \T1/ptm/m/it/10 0.0006849315068493151\T1/ptm/m/n/10 , \T1/ptm/m/it/10 iv_name: Underfull \hbox (badness 10000) in paragraph at lines 2722--2722 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Us-ageDe-pen-de ntBed-net\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2722--2722 \T1/ptm/m/it/10 sonal_dependence: [][]dict[][] = None\T1/ptm/m/n/10 , [47] [48] Underfull \hbox (badness 10000) in paragraph at lines 2921--2921 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2921--2921 \T1/ptm/m/it/10 start_day\T1/ptm/m/n/10 , \T1/ptm/m/it/10 file- [49] Underfull \hbox (badness 10000) in paragraph at lines 2932--2932 [][]\T1/ptm/m/it/10 int[][] = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-mo- Underfull \hbox (badness 10000) in paragraph at lines 2932--2932 \T1/ptm/m/it/10 graphic_coverage: Underfull \hbox (badness 10000) in paragraph at lines 2932--2932 [][]\T1/ptm/m/it/10 float[][] = 1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar- Underfull \hbox (badness 10000) in paragraph at lines 2932--2932 \T1/ptm/m/it/10 get_num_individuals: Underfull \hbox (badness 10000) in paragraph at lines 2932--2932 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 rep- Underfull \hbox (badness 7273) in paragraph at lines 2932--2932 \T1/ptm/m/it/10 e-ti-tions: [][]int[][] = 1\T1/ptm/m/n/10 , Overfull \hbox (34.97314pt too wide) in paragraph at lines 2932--2932 \T1/ptm/m/it/10 timesteps_between_repetitions: Underfull \hbox (badness 10000) in paragraph at lines 2932--2932 [][]\T1/ptm/m/it/10 int[][] = 365\T1/ptm/m/n/10 , Overfull \hbox (14.53346pt too wide) in paragraph at lines 2932--2932 \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 2932--2932 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Overfull \hbox (21.19351pt too wide) in paragraph at lines 2932--2932 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 2932--2932 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar- Underfull \hbox (badness 7667) in paragraph at lines 2932--2932 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 All\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 broad- Underfull \hbox (badness 10000) in paragraph at lines 2932--2932 \T1/ptm/m/it/10 cast_event: [][]str[][] = Underfull \hbox (badness 10000) in paragraph at lines 2932--2932 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 vac-cine_type: Underfull \hbox (badness 10000) in paragraph at lines 2932--2932 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Ac-qui-si-tion- Underfull \hbox (badness 10000) in paragraph at lines 2932--2932 \T1/ptm/m/it/10 Block-ing\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 vac - Underfull \hbox (badness 10000) in paragraph at lines 2932--2932 \T1/ptm/m/it/10 vac-cine_initial_effect: Underfull \hbox (badness 10000) in paragraph at lines 2932--2932 [][]\T1/ptm/m/it/10 float[][] = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 vac- Underfull \hbox (badness 10000) in paragraph at lines 2932--2932 \T1/ptm/m/it/10 cine_box_duration: Underfull \hbox (badness 10000) in paragraph at lines 2932--2932 [][]\T1/ptm/m/it/10 int[][] = 365\T1/ptm/m/n/10 , \T1/ptm/m/it/10 vac- Overfull \hbox (29.97394pt too wide) in paragraph at lines 2932--2932 \T1/ptm/m/it/10 cine_exponential_decay_rate: Underfull \hbox (badness 10000) in paragraph at lines 2932--2932 [][]\T1/ptm/m/it/10 float[][] = 1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ef-fi- Overfull \hbox (2.56361pt too wide) in paragraph at lines 2932--2932 \T1/ptm/m/it/10 cacy_is_multiplicative: Underfull \hbox (badness 5893) in paragraph at lines 2958--2960 []\T1/pcr/b/n/10 repetitions \T1/ptm/m/n/10 ^^U The num-ber of times an in-ter- ven-tion is given, used with [50] Underfull \hbox (badness 10000) in paragraph at lines 3020--3020 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3020--3020 \T1/ptm/m/it/10 start_day\T1/ptm/m/n/10 , \T1/ptm/m/it/10 file- [51] Underfull \hbox (badness 10000) in paragraph at lines 3055--3055 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3055--3055 \T1/ptm/m/it/10 start_day: [][]int[][] = Underfull \hbox (badness 10000) in paragraph at lines 3055--3055 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 du-ra-tion_days: Underfull \hbox (badness 10000) in paragraph at lines 3055--3055 [][]\T1/ptm/m/it/10 int[][] = 365000\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3055--3055 \T1/ptm/m/it/10 clude_vector_state: Underfull \hbox (badness 10000) in paragraph at lines 3055--3055 [][]\T1/ptm/m/it/10 int[][] = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 strat- Underfull \hbox (badness 10000) in paragraph at lines 3055--3055 \T1/ptm/m/it/10 ify_by: [][]str[][] = Underfull \hbox (badness 10000) in paragraph at lines 3055--3055 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 GENOME\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ ptm/m/it/10 com- Overfull \hbox (9.02399pt too wide) in paragraph at lines 3055--3055 \T1/ptm/m/it/10 bine_similar_genomes: Underfull \hbox (badness 10000) in paragraph at lines 3055--3055 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 spe- Overfull \hbox (102.76315pt too wide) in paragraph at lines 3055--3055 \T1/ptm/m/it/10 cific_genome_combinations_for_stratification: Underfull \hbox (badness 10000) in paragraph at lines 3055--3055 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 al- Overfull \hbox (64.54318pt too wide) in paragraph at lines 3055--3055 \T1/ptm/m/it/10 lele_combinations_for_stratification: Overfull \hbox (2.32376pt too wide) in paragraph at lines 3055--3055 \T1/ptm/m/it/10 les_for_stratification: Underfull \hbox (badness 10000) in paragraph at lines 3055--3055 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- [52] Underfull \hbox (badness 10000) in paragraph at lines 3135--3135 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3154--3154 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 6893) in paragraph at lines 3154--3154 \T1/ptm/m/it/10 = 365000\T1/ptm/m/n/10 , \T1/ptm/m/it/10 nodes: Underfull \hbox (badness 5847) in paragraph at lines 3154--3154 \T1/ptm/m/it/10 ing_interval: [][]float[][] Underfull \hbox (badness 10000) in paragraph at lines 3154--3154 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in-di-vid- Underfull \hbox (badness 10000) in paragraph at lines 3154--3154 \T1/ptm/m/it/10 ual_property_filter: Underfull \hbox (badness 10000) in paragraph at lines 3154--3154 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , \T1/ptm/m/it/ 10 in-fec- Underfull \hbox (badness 10000) in paragraph at lines 3154--3154 \T1/ptm/m/it/10 tious-ness_bins: Underfull \hbox (badness 10000) in paragraph at lines 3154--3154 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Overfull \hbox (4.30418pt too wide) in paragraph at lines 3154--3154 \T1/ptm/m/it/10 max_number_reports: Underfull \hbox (badness 7291) in paragraph at lines 3154--3154 [][]\T1/ptm/m/it/10 int[][] = 100\T1/ptm/m/n/10 , \T1/ptm/m/it/10 par-a- Underfull \hbox (badness 10000) in paragraph at lines 3154--3154 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- [53] Underfull \hbox (badness 10000) in paragraph at lines 3215--3215 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i- Underfull \hbox (badness 10000) in paragraph at lines 3231--3231 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3231--3231 \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3231--3231 \T1/ptm/m/it/10 start_day: Underfull \hbox (badness 10000) in paragraph at lines 3231--3231 \T1/ptm/m/it/10 ra-tion_days: Underfull \hbox (badness 10000) in paragraph at lines 3231--3231 \T1/ptm/m/it/10 nodes: Overfull \hbox (3.20416pt too wide) in paragraph at lines 3231--3231 \T1/ptm/m/it/10 pretty_format: Overfull \hbox (15.2441pt too wide) in paragraph at lines 3231--3231 \T1/ptm/m/it/10 port_description: [54] Underfull \hbox (badness 10000) in paragraph at lines 3271--3271 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3271--3271 \T1/ptm/m/it/10 = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Re-port-Malar- Underfull \hbox (badness 10000) in paragraph at lines 3271--3271 \T1/ptm/m/it/10 i-aFil-tered.json\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3271--3271 \T1/ptm/m/it/10 min_age_years: Underfull \hbox (badness 10000) in paragraph at lines 3271--3271 [][]\T1/ptm/m/it/10 float[][] = 0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3271--3271 \T1/ptm/m/it/10 max_age_years: Underfull \hbox (badness 10000) in paragraph at lines 3271--3271 [][]\T1/ptm/m/it/10 float[][] = 125\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3271--3271 \T1/ptm/m/it/10 has_interventions: Overfull \hbox (74.41385pt too wide) in paragraph at lines 3271--3271 \T1/ptm/m/it/10 clude_30day_avg_infection_duration: [55] Underfull \hbox (badness 10000) in paragraph at lines 3321--3321 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3321--3321 \T1/ptm/m/it/10 man- Underfull \hbox (badness 10000) in paragraph at lines 3321--3321 \T1/ptm/m/it/10 i-fest\T1/ptm/m/n/10 , Overfull \hbox (10.35448pt too wide) in paragraph at lines 3321--3321 \T1/ptm/m/it/10 start_day: Overfull \hbox (6.45485pt too wide) in paragraph at lines 3321--3321 \T1/ptm/m/it/10 end_day: Underfull \hbox (badness 10000) in paragraph at lines 3321--3321 [][]\T1/ptm/m/it/10 int[][] = Overfull \hbox (1.74501pt too wide) in paragraph at lines 3321--3321 \T1/ptm/m/it/10 365000\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3321--3321 \T1/ptm/m/it/10 re-port- Overfull \hbox (21.46431pt too wide) in paragraph at lines 3321--3321 \T1/ptm/m/it/10 ing_interval: Underfull \hbox (badness 10000) in paragraph at lines 3321--3321 \T1/ptm/m/it/10 nodes: Underfull \hbox (badness 10000) in paragraph at lines 3321--3321 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 3321--3321 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3321--3321 \T1/ptm/m/it/10 re- Overfull \hbox (28.1245pt too wide) in paragraph at lines 3321--3321 \T1/ptm/m/it/10 port_filename: Underfull \hbox (badness 10000) in paragraph at lines 3321--3321 [][]\T1/ptm/m/it/10 str[][] = Underfull \hbox (badness 10000) in paragraph at lines 3321--3321 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Spa- Underfull \hbox (badness 10000) in paragraph at lines 3321--3321 \T1/ptm/m/it/10 tial-Re- Underfull \hbox (badness 10000) in paragraph at lines 3321--3321 \T1/ptm/m/it/10 port- Underfull \hbox (badness 10000) in paragraph at lines 3321--3321 \T1/ptm/m/it/10 Malar- Underfull \hbox (badness 10000) in paragraph at lines 3321--3321 \T1/ptm/m/it/10 i-aFil- Underfull \hbox (badness 10000) in paragraph at lines 3321--3321 \T1/ptm/m/it/10 tered\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3321--3321 \T1/ptm/m/it/10 spa- Overfull \hbox (56.87419pt too wide) in paragraph at lines 3321--3321 \T1/ptm/m/it/10 tial_output_channels: Underfull \hbox (badness 10000) in paragraph at lines 3321--3321 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 3349--3357 \T1/ptm/m/n/10 ^^PBlood_Smear_Gametocyte_Prevalence^^Q, ^^PBlood_Smear_Parasite _Prevalence^^Q, Underfull \hbox (badness 10000) in paragraph at lines 3349--3357 \T1/ptm/m/n/10 ^^PCam-paign_Cost^^Q, ^^PDaily_Bites_Per_Human^^Q, ^^PDaily_EIR^ ^Q, ^^PDis-ease_Deaths^^Q, Underfull \hbox (badness 10000) in paragraph at lines 3349--3357 \T1/ptm/m/n/10 ^^PNew_Reported_Infections^^Q, ^^PNew_Severe_Cases^^Q, ^^PPCR_Ga metocyte_Prevalence^^Q, Underfull \hbox (badness 10000) in paragraph at lines 3349--3357 \T1/ptm/m/n/10 ^^PPCR_Parasite_Prevalence^^Q, ^^PPfHRP2_Prevalence^^Q, ^^PPop-u -la-tion^^Q, ^^PPreva- Underfull \hbox (badness 10000) in paragraph at lines 3349--3357 \T1/ptm/m/n/10 lence^^Q, ^^PRain-fall^^Q, ^^PRel-a-tive_Humidity^^Q, ^^PTrue_Pr evalence^^Q De-faults: [56] Underfull \hbox (badness 10000) in paragraph at lines 3370--3370 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3370--3370 \T1/ptm/m/it/10 start_day: [][]int[][] = Underfull \hbox (badness 10000) in paragraph at lines 3370--3370 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 du-ra-tion_days: Underfull \hbox (badness 10000) in paragraph at lines 3370--3370 [][]\T1/ptm/m/it/10 int[][] = 365000\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3370--3370 \T1/ptm/m/it/10 event_trigger_list: Underfull \hbox (badness 6893) in paragraph at lines 3370--3370 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 nodes: Underfull \hbox (badness 10000) in paragraph at lines 3370--3370 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 3370--3370 \T1/ptm/m/it/10 port_description: Underfull \hbox (badness 10000) in paragraph at lines 3391--3391 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 end_day: Underfull \hbox (badness 10000) in paragraph at lines 3391--3391 [][]\T1/ptm/m/it/10 int[][] = 365000\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in- Underfull \hbox (badness 10000) in paragraph at lines 3391--3391 \T1/ptm/m/it/10 clude_infection_table: Underfull \hbox (badness 10000) in paragraph at lines 3391--3391 [][]\T1/ptm/m/it/10 int[][] = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in- [57] Underfull \hbox (badness 10000) in paragraph at lines 3453--3453 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3453--3453 \T1/ptm/m/it/10 ing_interval: Underfull \hbox (badness 10000) in paragraph at lines 3453--3453 [][]\T1/ptm/m/it/10 int[][] = 1\T1/ptm/m/n/10 , Overfull \hbox (10.30418pt too wide) in paragraph at lines 3453--3453 \T1/ptm/m/it/10 max_number_reports: Underfull \hbox (badness 10000) in paragraph at lines 3453--3453 [][]\T1/ptm/m/it/10 int[][] = 365000\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3453--3453 \T1/ptm/m/it/10 nodes: [][]list[][] = Underfull \hbox (badness 10000) in paragraph at lines 3453--3453 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 age_bins: Underfull \hbox (badness 10000) in paragraph at lines 3453--3453 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3453--3453 \T1/ptm/m/it/10 pretty_format: Underfull \hbox (badness 10000) in paragraph at lines 3453--3453 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 3453--3453 \T1/ptm/m/it/10 port_description: Underfull \hbox (badness 10000) in paragraph at lines 3503--3503 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 7168) in paragraph at lines 3503--3503 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 du-ra-tion_days: Underfull \hbox (badness 10000) in paragraph at lines 3503--3503 [][]\T1/ptm/m/it/10 int[][] = 365000\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3503--3503 \T1/ptm/m/it/10 event_trigger_list: Underfull \hbox (badness 10000) in paragraph at lines 3503--3503 \T1/ptm/m/it/10 ing_interval: Underfull \hbox (badness 10000) in paragraph at lines 3503--3503 [][]\T1/ptm/m/it/10 float[][] = 1\T1/ptm/m/n/10 , Overfull \hbox (10.30418pt too wide) in paragraph at lines 3503--3503 \T1/ptm/m/it/10 max_number_reports: Underfull \hbox (badness 10000) in paragraph at lines 3503--3503 [][]\T1/ptm/m/it/10 int[][] = 365000\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3503--3503 \T1/ptm/m/it/10 nodes: [][]list[][] = Underfull \hbox (badness 10000) in paragraph at lines 3503--3503 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in-di-vid- Overfull \hbox (20.78384pt too wide) in paragraph at lines 3503--3503 \T1/ptm/m/it/10 ual_property_to_collect: Underfull \hbox (badness 10000) in paragraph at lines 3503--3503 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3503--3503 \T1/ptm/m/it/10 pretty_format: Underfull \hbox (badness 10000) in paragraph at lines 3503--3503 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 3503--3503 \T1/ptm/m/it/10 port_description: [58] [59] Underfull \hbox (badness 10000) in paragraph at lines 3608--3608 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3608--3608 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in-di-vid- Overfull \hbox (26.78384pt too wide) in paragraph at lines 3608--3608 \T1/ptm/m/it/10 ual_property_to_collect: Underfull \hbox (badness 6526) in paragraph at lines 3608--3608 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , \T1/ptm/m/it/ 10 strat- Underfull \hbox (badness 10000) in paragraph at lines 3608--3608 \T1/ptm/m/it/10 ify_by_gender: Underfull \hbox (badness 10000) in paragraph at lines 3642--3642 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3642--3642 \T1/ptm/m/it/10 man- Underfull \hbox (badness 10000) in paragraph at lines 3642--3642 \T1/ptm/m/it/10 i-fest\T1/ptm/m/n/10 , Overfull \hbox (14.48471pt too wide) in paragraph at lines 3642--3642 \T1/ptm/m/it/10 age_bins: Underfull \hbox (badness 10000) in paragraph at lines 3642--3642 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3642--3642 \T1/ptm/m/it/10 in-di- Underfull \hbox (badness 10000) in paragraph at lines 3642--3642 \T1/ptm/m/it/10 vid- Overfull \hbox (74.78384pt too wide) in paragraph at lines 3642--3642 \T1/ptm/m/it/10 ual_property_to_collect: Underfull \hbox (badness 10000) in paragraph at lines 3642--3642 [][]\T1/ptm/m/it/10 str[][] Underfull \hbox (badness 10000) in paragraph at lines 3642--3642 \T1/ptm/m/it/10 = \TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3642--3642 \T1/ptm/m/it/10 strat- Overfull \hbox (35.68442pt too wide) in paragraph at lines 3642--3642 \T1/ptm/m/it/10 ify_by_gender: [60] Overfull \hbox (47.85474pt too wide) in paragraph at lines 3676--3676 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , Overfull \hbox (49.79494pt too wide) in paragraph at lines 3676--3676 \T1/ptm/m/it/10 man- Overfull \hbox (35.35486pt too wide) in paragraph at lines 3676--3676 \T1/ptm/m/it/10 i- Overfull \hbox (45.63463pt too wide) in paragraph at lines 3676--3676 \T1/ptm/m/it/10 fest\T1/ptm/m/n/10 , Overfull \hbox (46.26491pt too wide) in paragraph at lines 3676--3676 \T1/ptm/m/it/10 bar- Overfull \hbox (55.34474pt too wide) in paragraph at lines 3676--3676 \T1/ptm/m/it/10 codes: Overfull \hbox (41.47458pt too wide) in paragraph at lines 3676--3676 [][]\T1/ptm/m/it/10 list[][] Overfull \hbox (35.99501pt too wide) in paragraph at lines 3676--3676 \T1/ptm/m/it/10 = Overfull \hbox (52.85487pt too wide) in paragraph at lines 3676--3676 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (122.7736pt too wide) in paragraph at lines 3676--3676 \T1/ptm/m/it/10 drug_resistant_strings: Overfull \hbox (41.47458pt too wide) in paragraph at lines 3676--3676 [][]\T1/ptm/m/it/10 list[][] Overfull \hbox (35.99501pt too wide) in paragraph at lines 3676--3676 \T1/ptm/m/it/10 = Overfull \hbox (52.85487pt too wide) in paragraph at lines 3676--3676 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (148.3231pt too wide) in paragraph at lines 3676--3676 \T1/ptm/m/it/10 drug_resistant_statistic_type: Overfull \hbox (39.80469pt too wide) in paragraph at lines 3676--3676 [][]\T1/ptm/m/it/10 str[][] Overfull \hbox (35.99501pt too wide) in paragraph at lines 3676--3676 \T1/ptm/m/it/10 = Overfull \hbox (240.52356pt too wide) in paragraph at lines 3676--3676 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 NUM_PEOPLE_WITH_RESISTANT_INFECTION\TS1/ptm/m /it/10 '\T1/ptm/m/n/10 , Overfull \hbox (68.48471pt too wide) in paragraph at lines 3676--3676 \T1/ptm/m/it/10 age_bins: Overfull \hbox (41.47458pt too wide) in paragraph at lines 3676--3676 [][]\T1/ptm/m/it/10 list[][] Overfull \hbox (35.99501pt too wide) in paragraph at lines 3676--3676 \T1/ptm/m/it/10 = Overfull \hbox (52.85487pt too wide) in paragraph at lines 3676--3676 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (40.35486pt too wide) in paragraph at lines 3676--3676 \T1/ptm/m/it/10 in- Overfull \hbox (40.35486pt too wide) in paragraph at lines 3676--3676 \T1/ptm/m/it/10 di- Overfull \hbox (44.7948pt too wide) in paragraph at lines 3676--3676 \T1/ptm/m/it/10 vid- Overfull \hbox (128.78384pt too wide) in paragraph at lines 3676--3676 \T1/ptm/m/it/10 ual_property_to_collect: Overfull \hbox (39.80469pt too wide) in paragraph at lines 3676--3676 [][]\T1/ptm/m/it/10 str[][] Overfull \hbox (35.99501pt too wide) in paragraph at lines 3676--3676 \T1/ptm/m/it/10 = Overfull \hbox (36.0248pt too wide) in paragraph at lines 3676--3676 \TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , Overfull \hbox (50.76463pt too wide) in paragraph at lines 3676--3676 \T1/ptm/m/it/10 strat- Overfull \hbox (89.68442pt too wide) in paragraph at lines 3676--3676 \T1/ptm/m/it/10 ify_by_gender: Overfull \hbox (39.8048pt too wide) in paragraph at lines 3676--3676 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (35.99501pt too wide) in paragraph at lines 3676--3676 \T1/ptm/m/it/10 = Overfull \hbox (40.24501pt too wide) in paragraph at lines 3676--3676 \T1/ptm/m/it/10 1\T1/pcr/m/n/10 ) [61] Underfull \hbox (badness 10000) in paragraph at lines 3727--3727 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Overfull \hbox (17.85474pt too wide) in paragraph at lines 3756--3756 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , Overfull \hbox (19.79494pt too wide) in paragraph at lines 3756--3756 \T1/ptm/m/it/10 man- Overfull \hbox (5.35486pt too wide) in paragraph at lines 3756--3756 \T1/ptm/m/it/10 i- Overfull \hbox (15.63463pt too wide) in paragraph at lines 3756--3756 \T1/ptm/m/it/10 fest\T1/ptm/m/n/10 , Overfull \hbox (48.68404pt too wide) in paragraph at lines 3756--3756 \T1/ptm/m/it/10 species_list: Overfull \hbox (11.47458pt too wide) in paragraph at lines 3756--3756 [][]\T1/ptm/m/it/10 list[][] Overfull \hbox (5.99501pt too wide) in paragraph at lines 3756--3756 \T1/ptm/m/it/10 = Overfull \hbox (22.85487pt too wide) in paragraph at lines 3756--3756 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (20.76463pt too wide) in paragraph at lines 3756--3756 \T1/ptm/m/it/10 strat- Overfull \hbox (60.89413pt too wide) in paragraph at lines 3756--3756 \T1/ptm/m/it/10 ify_by_species: Overfull \hbox (9.8048pt too wide) in paragraph at lines 3756--3756 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (5.99501pt too wide) in paragraph at lines 3756--3756 \T1/ptm/m/it/10 = Overfull \hbox (6.74501pt too wide) in paragraph at lines 3756--3756 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , Overfull \hbox (10.35486pt too wide) in paragraph at lines 3756--3756 \T1/ptm/m/it/10 in- Overfull \hbox (70.75449pt too wide) in paragraph at lines 3756--3756 \T1/ptm/m/it/10 clude_wolbachia: Overfull \hbox (9.8048pt too wide) in paragraph at lines 3756--3756 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (5.99501pt too wide) in paragraph at lines 3756--3756 \T1/ptm/m/it/10 = Overfull \hbox (6.74501pt too wide) in paragraph at lines 3756--3756 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , Overfull \hbox (10.35486pt too wide) in paragraph at lines 3756--3756 \T1/ptm/m/it/10 in- Overfull \hbox (65.80426pt too wide) in paragraph at lines 3756--3756 \T1/ptm/m/it/10 clude_gestation: Overfull \hbox (9.8048pt too wide) in paragraph at lines 3756--3756 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (5.99501pt too wide) in paragraph at lines 3756--3756 \T1/ptm/m/it/10 = Overfull \hbox (6.74501pt too wide) in paragraph at lines 3756--3756 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , Overfull \hbox (16.26491pt too wide) in paragraph at lines 3756--3756 \T1/ptm/m/it/10 bar- Overfull \hbox (25.34474pt too wide) in paragraph at lines 3756--3756 \T1/ptm/m/it/10 codes: Overfull \hbox (11.47458pt too wide) in paragraph at lines 3756--3756 [][]\T1/ptm/m/it/10 list[][] Overfull \hbox (5.99501pt too wide) in paragraph at lines 3756--3756 \T1/ptm/m/it/10 = Overfull \hbox (26.35487pt too wide) in paragraph at lines 3756--3756 \T1/ptm/m/it/10 None\T1/pcr/m/n/10 ) [62] Underfull \hbox (badness 10000) in paragraph at lines 3796--3796 \T1/ptm/m/it/10 only_include_events_in_list: Underfull \hbox (badness 8189) in paragraph at lines 3796--3796 [][]\T1/ptm/m/it/10 bool[][] = True\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ips_to_reco rd: Underfull \hbox (badness 10000) in paragraph at lines 3796--3796 \T1/ptm/m/it/10 node_ids: [][]list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3796--3796 \T1/ptm/m/it/10 min_age_years: [][]float[][] = 0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3796--3796 \TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , \T1/ptm/m/it/10 must_have_intervention: Underfull \hbox (badness 10000) in paragraph at lines 3796--3796 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , \T1/ptm/m/it/ 10 prop- Underfull \hbox (badness 10000) in paragraph at lines 3796--3796 \T1/ptm/m/it/10 erty_change_ip_to_record: [63] Underfull \hbox (badness 10000) in paragraph at lines 3853--3853 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3853--3853 \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3853--3853 \T1/ptm/m/it/10 start_day: Underfull \hbox (badness 10000) in paragraph at lines 3853--3853 \T1/ptm/m/it/10 ra-tion_days: Underfull \hbox (badness 10000) in paragraph at lines 3853--3853 [][]\T1/ptm/m/it/10 int[][] = Underfull \hbox (badness 10000) in paragraph at lines 3853--3853 \T1/ptm/m/it/10 36500000\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3853--3853 \T1/ptm/m/it/10 re- Overfull \hbox (15.2441pt too wide) in paragraph at lines 3853--3853 \T1/ptm/m/it/10 port_description: Underfull \hbox (badness 10000) in paragraph at lines 3853--3853 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , [64] Underfull \hbox (badness 10000) in paragraph at lines 3888--3888 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pa-ram-e-ters: Underfull \hbox (badness 10000) in paragraph at lines 3888--3888 \T1/ptm/m/it/10 dict = \T1/ptm/m/n/10 , Underfull \hbox (badness 6348) in paragraph at lines 3888--3888 \T1/ptm/m/it/10 En-abled: bool = Underfull \hbox (badness 10000) in paragraph at lines 3936--3936 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pa-ram-e-ters: Underfull \hbox (badness 10000) in paragraph at lines 3936--3936 \T1/ptm/m/it/10 dict = \T1/ptm/m/n/10 , Underfull \hbox (badness 6348) in paragraph at lines 3936--3936 \T1/ptm/m/it/10 En-abled: bool = Underfull \hbox (badness 10000) in paragraph at lines 3960--3960 []\T1/ptm/m/it/10 class_name: Underfull \hbox (badness 10000) in paragraph at lines 3960--3960 \T1/ptm/m/it/10 = \T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3960--3960 \T1/ptm/m/it/10 En-abled: Overfull \hbox (0.5943pt too wide) in paragraph at lines 3960--3960 \T1/ptm/m/it/10 Pretty_Format: [65] Overfull \hbox (55.2345pt too wide) in paragraph at lines 3985--3985 []\T1/ptm/m/it/10 class_name: Overfull \hbox (15.80469pt too wide) in paragraph at lines 3985--3985 \T1/ptm/m/it/10 str Overfull \hbox (11.99501pt too wide) in paragraph at lines 3985--3985 \T1/ptm/m/it/10 = Overfull \hbox (28.85487pt too wide) in paragraph at lines 3985--3985 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (18.57497pt too wide) in paragraph at lines 3985--3985 \T1/ptm/m/it/10 pa- Overfull \hbox (24.53493pt too wide) in paragraph at lines 3985--3985 \T1/ptm/m/it/10 ram- Overfull \hbox (13.01491pt too wide) in paragraph at lines 3985--3985 \T1/ptm/m/it/10 e- Overfull \hbox (23.4746pt too wide) in paragraph at lines 3985--3985 \T1/ptm/m/it/10 ters: Overfull \hbox (20.24474pt too wide) in paragraph at lines 3985--3985 \T1/ptm/m/it/10 dict Overfull \hbox (11.99501pt too wide) in paragraph at lines 3985--3985 \T1/ptm/m/it/10 = Overfull \hbox (27.5448pt too wide) in paragraph at lines 3985--3985 \T1/ptm/m/it/10 \T1/ptm/m/n/10 , Overfull \hbox (19.68495pt too wide) in paragraph at lines 3985--3985 \T1/ptm/m/it/10 En- Overfull \hbox (30.7948pt too wide) in paragraph at lines 3985--3985 \T1/ptm/m/it/10 abled: Overfull \hbox (23.0249pt too wide) in paragraph at lines 3985--3985 \T1/ptm/m/it/10 bool Overfull \hbox (11.99501pt too wide) in paragraph at lines 3985--3985 \T1/ptm/m/it/10 = Overfull \hbox (26.08485pt too wide) in paragraph at lines 3985--3985 \T1/ptm/m/it/10 True\T1/ptm/m/n/10 , Overfull \hbox (66.5943pt too wide) in paragraph at lines 3985--3985 \T1/ptm/m/it/10 Pretty_Format: Overfull \hbox (23.0249pt too wide) in paragraph at lines 3985--3985 \T1/ptm/m/it/10 bool Overfull \hbox (11.99501pt too wide) in paragraph at lines 3985--3985 \T1/ptm/m/it/10 = Overfull \hbox (29.58485pt too wide) in paragraph at lines 3985--3985 \T1/ptm/m/it/10 True\T1/pcr/m/n/10 ) Underfull \hbox (badness 5832) in paragraph at lines 3988--3993 \T1/ptm/m/n/10 The re-port can only be used when the sim-u-la-tion setup pa-ram -e-ter \T1/ptm/b/n/10 Malaria_Model \T1/ptm/m/n/10 is set to Underfull \hbox (badness 10000) in paragraph at lines 4010--4010 []\T1/ptm/m/it/10 class_name: str Underfull \hbox (badness 7291) in paragraph at lines 4010--4010 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pa-ram- Underfull \hbox (badness 10000) in paragraph at lines 4010--4010 \T1/ptm/m/it/10 e-ters: dict = Underfull \hbox (badness 10000) in paragraph at lines 4010--4010 \T1/ptm/m/it/10 \T1/ptm/m/n/10 , \T1/ptm/m/it/10 En- Underfull \hbox (badness 10000) in paragraph at lines 4010--4010 \T1/ptm/m/it/10 Pretty_Format: [66] Overfull \hbox (13.2345pt too wide) in paragraph at lines 4034--4034 []\T1/ptm/m/it/10 class_name: Underfull \hbox (badness 10000) in paragraph at lines 4034--4034 \T1/ptm/m/it/10 str = Underfull \hbox (badness 10000) in paragraph at lines 4034--4034 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4034--4034 \T1/ptm/m/it/10 pa-ram-e- Underfull \hbox (badness 10000) in paragraph at lines 4034--4034 \T1/ptm/m/it/10 tory>\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4034--4034 \T1/ptm/m/it/10 En-abled: Underfull \hbox (badness 10000) in paragraph at lines 4034--4034 \T1/ptm/m/it/10 bool Underfull \hbox (badness 10000) in paragraph at lines 4034--4034 \T1/ptm/m/it/10 = True\T1/ptm/m/n/10 , Overfull \hbox (24.5943pt too wide) in paragraph at lines 4034--4034 \T1/ptm/m/it/10 Pretty_Format: Underfull \hbox (badness 10000) in paragraph at lines 4034--4034 \T1/ptm/m/it/10 bool = Underfull \hbox (badness 10000) in paragraph at lines 4059--4059 []\T1/ptm/m/it/10 class_name: str = Underfull \hbox (badness 10000) in paragraph at lines 4059--4059 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pa-ram-e-ters: [67] Underfull \hbox (badness 6236) in paragraph at lines 4107--4107 []\T1/ptm/m/it/10 class_name: str = Underfull \hbox (badness 10000) in paragraph at lines 4107--4107 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pa-ram-e-ters: Underfull \hbox (badness 10000) in paragraph at lines 4107--4107 \T1/ptm/m/it/10 dict = \T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4131--4131 []\T1/ptm/m/it/10 class_name: str Underfull \hbox (badness 7291) in paragraph at lines 4131--4131 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pa-ram- Underfull \hbox (badness 10000) in paragraph at lines 4131--4131 \T1/ptm/m/it/10 e-ters: dict = Underfull \hbox (badness 10000) in paragraph at lines 4131--4131 \T1/ptm/m/it/10 \T1/ptm/m/n/10 , \T1/ptm/m/it/10 En- Underfull \hbox (badness 10000) in paragraph at lines 4131--4131 \T1/ptm/m/it/10 Pretty_Format: Underfull \hbox (badness 10000) in paragraph at lines 4160--4160 []\T1/ptm/m/it/10 class_name: Underfull \hbox (badness 10000) in paragraph at lines 4160--4160 \T1/ptm/m/it/10 pa-ram-e- Underfull \hbox (badness 10000) in paragraph at lines 4160--4160 \T1/ptm/m/it/10 \T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4160--4160 \T1/ptm/m/it/10 En-abled: Overfull \hbox (6.5943pt too wide) in paragraph at lines 4160--4160 \T1/ptm/m/it/10 Pretty_Format: [68] Overfull \hbox (13.2345pt too wide) in paragraph at lines 4204--4204 []\T1/ptm/m/it/10 class_name: Underfull \hbox (badness 10000) in paragraph at lines 4204--4204 \T1/ptm/m/it/10 str = Underfull \hbox (badness 10000) in paragraph at lines 4204--4204 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4204--4204 \T1/ptm/m/it/10 pa-ram-e- Underfull \hbox (badness 10000) in paragraph at lines 4204--4204 \T1/ptm/m/it/10 tory>\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4204--4204 \T1/ptm/m/it/10 En-abled: Underfull \hbox (badness 10000) in paragraph at lines 4204--4204 \T1/ptm/m/it/10 bool Underfull \hbox (badness 10000) in paragraph at lines 4204--4204 \T1/ptm/m/it/10 = True\T1/ptm/m/n/10 , Overfull \hbox (24.5943pt too wide) in paragraph at lines 4204--4204 \T1/ptm/m/it/10 Pretty_Format: Underfull \hbox (badness 10000) in paragraph at lines 4204--4204 \T1/ptm/m/it/10 bool = Underfull \hbox (badness 10000) in paragraph at lines 4228--4228 []\T1/ptm/m/it/10 class_name: Underfull \hbox (badness 10000) in paragraph at lines 4228--4228 \T1/ptm/m/it/10 str = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4228--4228 \T1/ptm/m/it/10 pa-ram-e-ters: Underfull \hbox (badness 10000) in paragraph at lines 4228--4228 \T1/ptm/m/it/10 dict = \T1/ptm/m/n/10 , \T1/ptm/m/it/10 En-abled: Underfull \hbox (badness 10000) in paragraph at lines 4228--4228 \T1/ptm/m/it/10 bool = True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4228--4228 \T1/ptm/m/it/10 Pretty_Format: Overfull \hbox (19.2345pt too wide) in paragraph at lines 4251--4251 []\T1/ptm/m/it/10 class_name: Underfull \hbox (badness 10000) in paragraph at lines 4251--4251 \T1/ptm/m/it/10 str = Underfull \hbox (badness 10000) in paragraph at lines 4251--4251 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4251--4251 \T1/ptm/m/it/10 pa-ram- Underfull \hbox (badness 10000) in paragraph at lines 4251--4251 \T1/ptm/m/it/10 e-ters: Underfull \hbox (badness 8151) in paragraph at lines 4251--4251 \T1/ptm/m/it/10 dict = Underfull \hbox (badness 10000) in paragraph at lines 4251--4251 \T1/ptm/m/it/10 \T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4251--4251 \T1/ptm/m/it/10 En- Underfull \hbox (badness 10000) in paragraph at lines 4251--4251 \T1/ptm/m/it/10 abled: Underfull \hbox (badness 10000) in paragraph at lines 4251--4251 \T1/ptm/m/it/10 True\T1/ptm/m/n/10 , Overfull \hbox (30.5943pt too wide) in paragraph at lines 4251--4251 \T1/ptm/m/it/10 Pretty_Format: [69] Overfull \hbox (67.2345pt too wide) in paragraph at lines 4279--4279 []\T1/ptm/m/it/10 class_name: Overfull \hbox (27.80469pt too wide) in paragraph at lines 4279--4279 \T1/ptm/m/it/10 str Overfull \hbox (23.99501pt too wide) in paragraph at lines 4279--4279 \T1/ptm/m/it/10 = Overfull \hbox (40.85487pt too wide) in paragraph at lines 4279--4279 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (30.57497pt too wide) in paragraph at lines 4279--4279 \T1/ptm/m/it/10 pa- Overfull \hbox (36.53493pt too wide) in paragraph at lines 4279--4279 \T1/ptm/m/it/10 ram- Overfull \hbox (25.01491pt too wide) in paragraph at lines 4279--4279 \T1/ptm/m/it/10 e- Overfull \hbox (35.4746pt too wide) in paragraph at lines 4279--4279 \T1/ptm/m/it/10 ters: Overfull \hbox (32.24474pt too wide) in paragraph at lines 4279--4279 \T1/ptm/m/it/10 dict Overfull \hbox (23.99501pt too wide) in paragraph at lines 4279--4279 \T1/ptm/m/it/10 = Overfull \hbox (39.5448pt too wide) in paragraph at lines 4279--4279 \T1/ptm/m/it/10 \T1/ptm/m/n/10 , Overfull \hbox (31.68495pt too wide) in paragraph at lines 4279--4279 \T1/ptm/m/it/10 En- Overfull \hbox (42.7948pt too wide) in paragraph at lines 4279--4279 \T1/ptm/m/it/10 abled: Overfull \hbox (35.0249pt too wide) in paragraph at lines 4279--4279 \T1/ptm/m/it/10 bool Overfull \hbox (23.99501pt too wide) in paragraph at lines 4279--4279 \T1/ptm/m/it/10 = Overfull \hbox (38.08485pt too wide) in paragraph at lines 4279--4279 \T1/ptm/m/it/10 True\T1/ptm/m/n/10 , Overfull \hbox (78.5943pt too wide) in paragraph at lines 4279--4279 \T1/ptm/m/it/10 Pretty_Format: Overfull \hbox (35.0249pt too wide) in paragraph at lines 4279--4279 \T1/ptm/m/it/10 bool Overfull \hbox (23.99501pt too wide) in paragraph at lines 4279--4279 \T1/ptm/m/it/10 = Overfull \hbox (41.58485pt too wide) in paragraph at lines 4279--4279 \T1/ptm/m/it/10 True\T1/pcr/m/n/10 ) [70] Underfull \hbox (badness 10000) in paragraph at lines 4307--4307 []\T1/ptm/m/it/10 class_name: str Underfull \hbox (badness 7291) in paragraph at lines 4307--4307 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pa-ram- Underfull \hbox (badness 10000) in paragraph at lines 4307--4307 \T1/ptm/m/it/10 e-ters: dict = Underfull \hbox (badness 10000) in paragraph at lines 4307--4307 \T1/ptm/m/it/10 \T1/ptm/m/n/10 , \T1/ptm/m/it/10 En- Underfull \hbox (badness 10000) in paragraph at lines 4307--4307 \T1/ptm/m/it/10 Pretty_Format: Overfull \hbox (37.2345pt too wide) in paragraph at lines 4331--4331 []\T1/ptm/m/it/10 class_name: Underfull \hbox (badness 10000) in paragraph at lines 4331--4331 \T1/ptm/m/it/10 str Underfull \hbox (badness 10000) in paragraph at lines 4331--4331 \T1/ptm/m/it/10 = Overfull \hbox (10.85487pt too wide) in paragraph at lines 4331--4331 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (0.57497pt too wide) in paragraph at lines 4331--4331 \T1/ptm/m/it/10 pa- Overfull \hbox (6.53493pt too wide) in paragraph at lines 4331--4331 \T1/ptm/m/it/10 ram- Underfull \hbox (badness 10000) in paragraph at lines 4331--4331 \T1/ptm/m/it/10 e- Overfull \hbox (5.4746pt too wide) in paragraph at lines 4331--4331 \T1/ptm/m/it/10 ters: Overfull \hbox (2.24474pt too wide) in paragraph at lines 4331--4331 \T1/ptm/m/it/10 dict Underfull \hbox (badness 10000) in paragraph at lines 4331--4331 \T1/ptm/m/it/10 = Overfull \hbox (9.5448pt too wide) in paragraph at lines 4331--4331 \T1/ptm/m/it/10 \T1/ptm/m/n/10 , Overfull \hbox (1.68495pt too wide) in paragraph at lines 4331--4331 \T1/ptm/m/it/10 En- Overfull \hbox (12.7948pt too wide) in paragraph at lines 4331--4331 \T1/ptm/m/it/10 abled: Overfull \hbox (5.0249pt too wide) in paragraph at lines 4331--4331 \T1/ptm/m/it/10 bool Underfull \hbox (badness 10000) in paragraph at lines 4331--4331 \T1/ptm/m/it/10 = Overfull \hbox (8.08485pt too wide) in paragraph at lines 4331--4331 \T1/ptm/m/it/10 True\T1/ptm/m/n/10 , Overfull \hbox (48.5943pt too wide) in paragraph at lines 4331--4331 \T1/ptm/m/it/10 Pretty_Format: Overfull \hbox (5.0249pt too wide) in paragraph at lines 4331--4331 \T1/ptm/m/it/10 bool Underfull \hbox (badness 10000) in paragraph at lines 4331--4331 \T1/ptm/m/it/10 = Overfull \hbox (11.58485pt too wide) in paragraph at lines 4331--4331 \T1/ptm/m/it/10 True\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 4356--4356 []\T1/ptm/m/it/10 class_name: Underfull \hbox (badness 10000) in paragraph at lines 4356--4356 \T1/ptm/m/it/10 = \T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4356--4356 \T1/ptm/m/it/10 En-abled: Overfull \hbox (0.5943pt too wide) in paragraph at lines 4356--4356 \T1/ptm/m/it/10 Pretty_Format: [71] Underfull \hbox (badness 10000) in paragraph at lines 4413--4413 []\T1/ptm/m/it/10 config\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/ 10 , Overfull \hbox (24.52415pt too wide) in paragraph at lines 4413--4413 \T1/ptm/m/it/10 var_gene_randomness_type: Underfull \hbox (badness 10000) in paragraph at lines 4413--4413 [][]\T1/ptm/m/it/10 str[][] = Underfull \hbox (badness 10000) in paragraph at lines 4414--4416 \T1/ptm/m/n/10 Sets up the de-fault pa-ram-e-ters for par-a-site ge-net-ics sim -u-la-tions Malaria_Model = [72] [73] Underfull \hbox (badness 10000) in paragraph at lines 4554--4554 []\T1/ptm/m/it/10 config\T1/ptm/m/n/10 , \T1/ptm/m/it/10 species_name: Underfull \hbox (badness 10000) in paragraph at lines 4554--4554 [][]\T1/ptm/m/it/10 str[][]\T1/ptm/m/n/10 , \T1/ptm/m/it/10 habi-tat_type: [][] str[][]\T1/ptm/m/n/10 , Underfull \hbox (badness 7631) in paragraph at lines 4555--4558 \T1/ptm/m/n/10 Set the Max_Larval_Capacity for a given species and habi-tat. Ef -fec-tively do-ing some-thing [74] [75] [76] Underfull \hbox (badness 10000) in paragraph at lines 4892--4892 []\T1/ptm/m/it/10 config\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/ 10 , \T1/ptm/m/it/10 in-sec- Underfull \hbox (badness 6675) in paragraph at lines 4892--4892 \T1/ptm/m/it/10 ti-cide_name: [][]str[][] = \TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , Underfull \hbox (badness 5939) in paragraph at lines 4892--4892 \T1/ptm/m/it/10 species: [][]str[][] = \TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , \T1/ ptm/m/it/10 al- Underfull \hbox (badness 6047) in paragraph at lines 4892--4892 \T1/ptm/m/it/10 block-ing: [][]float[][] = 1.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4892--4892 \T1/ptm/m/it/10 pelling: [][]float[][] = 1.0\T1/ptm/m/n/10 , [77] Underfull \hbox (badness 10000) in paragraph at lines 4962--4962 \T1/ptm/m/it/10 driver_type: [][]str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 CL AS-SIC\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4962--4962 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 shred-ding_allele_required : Underfull \hbox (badness 10000) in paragraph at lines 4962--4962 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 al-lele_shredding_fraction : Underfull \hbox (badness 10000) in paragraph at lines 4962--4962 [][]\T1/ptm/m/it/10 float[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 al- Underfull \hbox (badness 10000) in paragraph at lines 4962--4962 \T1/ptm/m/it/10 lele_to_shred_to_surviving_fraction: [78] [79] Underfull \hbox (badness 10000) in paragraph at lines 5095--5095 []\T1/ptm/m/it/10 config\T1/ptm/m/n/10 , \T1/ptm/m/it/10 species_name\T1/ptm/m/ n/10 , Underfull \hbox (badness 10000) in paragraph at lines 5095--5095 \T1/ptm/m/it/10 habi-tat_type\T1/ptm/m/n/10 , Underfull \hbox (badness 7631) in paragraph at lines 5096--5099 \T1/ptm/m/n/10 Set the Max_Larval_Capacity for a given species and habi-tat. 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[91] No file institute-for-disease-modeling-emodpy-malaria.ind. (./institute-for-disease-modeling-emodpy-malaria.aux) Package rerunfilecheck Warning: File `institute-for-disease-modeling-emodpy-mal aria.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on institute-for-disease-modeling-emodpy-malaria.pdf (95 pages, 347184 bytes). Transcript written on institute-for-disease-modeling-emodpy-malaria.log. Latexmk: Index file 'institute-for-disease-modeling-emodpy-malaria.idx' was written Latexmk: Missing input file: 'institute-for-disease-modeling-emodpy-malaria.ind' from line 'No file institute-for-disease-modeling-emodpy-malaria.ind.' Latexmk: References changed. 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Latexmk: Log file says output to 'institute-for-disease-modeling-emodpy-malaria.pdf' Latexmk: Log file says output to 'institute-for-disease-modeling-emodpy-malaria.pdf' Latexmk: List of undefined refs and citations: Reference `emodpy_malaria.demographics.MalariaDemographics:module-emodpy_malaria.demographics.MalariaDemographics' on page 91 undefined on input line 5604 Reference `emodpy_malaria.demographics:module-emodpy_malaria.demographics' on page 91 undefined on input line 5603 Reference `emodpy_malaria.interventions.bednet:module-emodpy_malaria.interventions.bednet' on page 91 undefined on input line 5606 Reference `emodpy_malaria.interventions.common:module-emodpy_malaria.interventions.common' on page 91 undefined on input line 5607 Reference `emodpy_malaria.interventions.community_health_worker:module-emodpy_malaria.interventions.community_health_worker' on page 91 undefined on input line 5608 Reference `emodpy_malaria.interventions.diag_survey:module-emodpy_malaria.interventions.diag_survey' on page 91 undefined on input line 5609 Reference `emodpy_malaria.interventions.drug:module-emodpy_malaria.interventions.drug' on page 91 undefined on input line 5610 Reference `emodpy_malaria.interventions.drug_campaign:module-emodpy_malaria.interventions.drug_campaign' on page 91 undefined on input line 5611 Reference `emodpy_malaria.interventions.inputeir:module-emodpy_malaria.interventions.inputeir' on page 91 undefined on input line 5612 Reference `emodpy_malaria.interventions.irs:module-emodpy_malaria.interventions.irs' on page 91 undefined on input line 5613 Reference `emodpy_malaria.interventions.ivermectin:module-emodpy_malaria.interventions.ivermectin' on page 91 undefined on input line 5614 Reference `emodpy_malaria.interventions.larvicide:module-emodpy_malaria.interventions.larvicide' on page 91 undefined on input line 5615 Reference `emodpy_malaria.interventions.mosquitorelease:module-emodpy_malaria.interventions.mosquitorelease' on page 91 undefined on input line 5616 Reference `emodpy_malaria.interventions.outbreak:module-emodpy_malaria.interventions.outbreak' on page 91 undefined on input line 5617 Reference `emodpy_malaria.interventions.outdoorrestkill:module-emodpy_malaria.interventions.outdoorrestkill' on page 91 undefined on input line 5618 Reference `emodpy_malaria.interventions.scale_larval_habitats:module-emodpy_malaria.interventions.scale_larval_habitats' on page 91 undefined on input line 5619 Reference `emodpy_malaria.interventions.spacespraying:module-emodpy_malaria.interventions.spacespraying' on page 91 undefined on input line 5620 Reference `emodpy_malaria.interventions.sugartrap:module-emodpy_malaria.interventions.sugartrap' on page 91 undefined on input line 5621 Reference `emodpy_malaria.interventions.treatment_seeking:module-emodpy_malaria.interventions.treatment_seeking' on page 91 undefined on input line 5622 Reference `emodpy_malaria.interventions.udbednet:module-emodpy_malaria.interventions.udbednet' on page 91 undefined on input line 5623 Reference `emodpy_malaria.interventions.vaccine:module-emodpy_malaria.interventions.vaccine' on page 91 undefined on input line 5624 Reference `emodpy_malaria.interventions:module-emodpy_malaria.interventions' on page 91 undefined on input line 5605 Reference `emodpy_malaria.malaria_config:module-emodpy_malaria.malaria_config' on page 91 undefined on input line 5625 Reference `emodpy_malaria.malaria_vector_species_params:module-emodpy_malaria.malaria_vector_species_params' on page 91 undefined on input line 5626 Reference `emodpy_malaria.reporters.builtin:module-emodpy_malaria.reporters.builtin' on page 91 undefined on input line 5628 Reference `emodpy_malaria.reporters:module-emodpy_malaria.reporters' on page 91 undefined on input line 5627 Reference `emodpy_malaria.vector_config:module-emodpy_malaria.vector_config' on page 91 undefined on input line 5629 Reference `emodpy_malaria:module-emodpy_malaria' on page 91 undefined on input line 5602 Latexmk: Summary of warnings: Latex failed to resolve 28 reference(s) Rule 'makeindex institute-for-disease-modeling-emodpy-malaria.idx': File changes, etc: Non-existent destination files: 'institute-for-disease-modeling-emodpy-malaria.ind' ------------ Run number 1 of rule 'makeindex institute-for-disease-modeling-emodpy-malaria.idx' ------------ ------------ Running 'makeindex -s python.ist -o "institute-for-disease-modeling-emodpy-malaria.ind" "institute-for-disease-modeling-emodpy-malaria.idx"' ------------ Latexmk: applying rule 'makeindex institute-for-disease-modeling-emodpy-malaria.idx'... 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(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) (./institute-for-disease-modeling-emodpy-malaria.out) (./institute-for-disease-modeling-emodpy-malaria.out) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd)<><><><> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}] [2] (./institute-for-disease-modeling-emodpy-malaria.toc) [1] [2] [1] [2] Chapter 1. (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) [3] [4] Chapter 2. Overfull \hbox (25.07484pt too wide) in paragraph at lines 240--240 []\T1/ptm/m/it/10 nodes\T1/ptm/m/n/10 , Overfull \hbox (59.9842pt too wide) in paragraph at lines 240--240 \T1/ptm/m/it/10 idref=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Gridded Overfull \hbox (22.58472pt too wide) in paragraph at lines 240--240 \T1/ptm/m/it/10 world Overfull \hbox (70.45445pt too wide) in paragraph at lines 240--240 \T1/ptm/m/it/10 grump2.5arcmin\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (65.15454pt too wide) in paragraph at lines 240--240 \T1/ptm/m/it/10 base_file=None\T1/ptm/m/n/10 , Overfull \hbox (56.58455pt too wide) in paragraph at lines 240--240 \T1/ptm/m/it/10 init_prev=0.0\T1/ptm/m/n/10 , Overfull \hbox (10.35486pt too wide) in paragraph at lines 240--240 \T1/ptm/m/it/10 in- Overfull \hbox (139.11363pt too wide) in paragraph at lines 240--240 \T1/ptm/m/it/10 clude_biting_heterogeneity=True\T1/pcr/m/n/10 ) [5] Underfull \hbox (badness 10000) in paragraph at lines 371--371 []\T1/ptm/m/it/10 lat=0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 371--371 \T1/ptm/m/it/10 lon=0\T1/ptm/m/n/10 , Overfull \hbox (23.99501pt too wide) in paragraph at lines 371--371 \T1/ptm/m/it/10 pop=1000000.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 371--371 \T1/ptm/m/it/10 name=1\T1/ptm/m/n/10 , Overfull \hbox (9.45456pt too wide) in paragraph at lines 371--371 \T1/ptm/m/it/10 forced_id=1\T1/ptm/m/n/10 , Overfull \hbox (14.58455pt too wide) in paragraph at lines 371--371 \T1/ptm/m/it/10 init_prev=0.2\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 371--371 \T1/ptm/m/it/10 in- Overfull \hbox (97.11363pt too wide) in paragraph at lines 371--371 \T1/ptm/m/it/10 clude_biting_heterogeneity=True\T1/pcr/m/n/10 ) [6] Underfull \hbox (badness 10000) in paragraph at lines 407--407 []\T1/ptm/m/it/10 pop_filename_in\T1/ptm/m/n/10 , Overfull \hbox (106.44351pt too wide) in paragraph at lines 407--407 \T1/ptm/m/it/10 pop_filename_out=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 spatial_grid ded_pop_dir\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 433--433 []\T1/ptm/m/it/10 input_file\T1/ptm/m/n/10 , Overfull \hbox (15.84473pt too wide) in paragraph at lines 433--433 \T1/ptm/m/it/10 res=0.008333333333333333\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 433--433 \T1/ptm/m/it/10 id_ref=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 from_csv\TS1/ptm/m/it/ 10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 433--433 \T1/ptm/m/it/10 init_prev=0.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in- Overfull \hbox (37.11363pt too wide) in paragraph at lines 433--433 \T1/ptm/m/it/10 clude_biting_heterogeneity=True\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 465--465 []\T1/ptm/m/it/10 tot_pop=1000000.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 465--465 \T1/ptm/m/it/10 num_nodes=100\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 465--465 \T1/ptm/m/it/10 frac_rural=0.3\T1/ptm/m/n/10 , Overfull \hbox (9.35394pt too wide) in paragraph at lines 465--465 \T1/ptm/m/it/10 id_ref=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 from_params\TS1/ptm/m/ it/10 '\T1/pcr/m/n/10 ) [7] Underfull \hbox (badness 10000) in paragraph at lines 509--509 \T1/ptm/m/it/10 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 block-ing_decay_rate: Underfull \hbox (badness 10000) in paragraph at lines 509--509 [][]\T1/ptm/m/it/10 float[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 block- Underfull \hbox (badness 10000) in paragraph at lines 509--509 [][]\T1/ptm/m/it/10 float[][] = 0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 509--509 \T1/ptm/m/it/10 killing_predecay_duration: Underfull \hbox (badness 10000) in paragraph at lines 509--509 [][]\T1/ptm/m/it/10 int[][] = 1460\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 509--509 \T1/ptm/m/it/10 pelling_decay_rate: Underfull \hbox (badness 10000) in paragraph at lines 509--509 [][]\T1/ptm/m/it/10 float[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 509--509 \T1/ptm/m/it/10 pelling_predecay_duration: Underfull \hbox (badness 10000) in paragraph at lines 509--509 [][]\T1/ptm/m/it/10 int[][] = 365\T1/ptm/m/n/10 , \T1/ptm/m/it/10 us- Underfull \hbox (badness 10000) in paragraph at lines 509--509 \T1/ptm/m/it/10 us-age_predecay_duration: Underfull \hbox (badness 10000) in paragraph at lines 534--534 [][]\T1/ptm/m/it/10 float[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 block-ing_pre decay_duration: Underfull \hbox (badness 10000) in paragraph at lines 534--534 [][]\T1/ptm/m/it/10 int[][] = 365\T1/ptm/m/n/10 , \T1/ptm/m/it/10 killing_decay _rate: [][]float[][] Underfull \hbox (badness 10000) in paragraph at lines 534--534 \T1/ptm/m/it/10 = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 killing_predecay_duration: [][]int[][] Underfull \hbox (badness 10000) in paragraph at lines 534--534 \T1/ptm/m/it/10 = 365\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-pelling_decay_rate: [] []float[][] = Underfull \hbox (badness 10000) in paragraph at lines 534--534 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-pelling_predecay_duration: [][]int[][] = Underfull \hbox (badness 5091) in paragraph at lines 534--534 \T1/ptm/m/it/10 365\T1/ptm/m/n/10 , \T1/ptm/m/it/10 us-age_decay_rate: [][]floa t[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 us- [8] Underfull \hbox (badness 10000) in paragraph at lines 611--611 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age=1.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 611--611 \T1/ptm/m/it/10 block-ing_eff=1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 killing_eff=1\T 1/ptm/m/n/10 , \T1/ptm/m/it/10 re- [9] Underfull \hbox (badness 10000) in paragraph at lines 654--654 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 680--680 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day: [][]int[][] = Underfull \hbox (badness 10000) in paragraph at lines 680--680 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age_by_ages: Underfull \hbox (badness 10000) in paragraph at lines 680--680 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 node_ids: Underfull \hbox (badness 10000) in paragraph at lines 680--680 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 itn_bednet: Overfull \hbox (109.64275pt too wide) in paragraph at lines 680--680 [][]\T1/ptm/m/n/10 emodpy_malaria.interventions.bednet.BednetIntervention[][] Underfull \hbox (badness 10000) in paragraph at lines 680--680 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 block-ing_eff: Underfull \hbox (badness 10000) in paragraph at lines 680--680 [][]\T1/ptm/m/it/10 float[][] = 0.9\T1/ptm/m/n/10 , \T1/ptm/m/it/10 block- Underfull \hbox (badness 10000) in paragraph at lines 680--680 \T1/ptm/m/it/10 = 0.000136986301369863\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 680--680 \T1/ptm/m/it/10 killing_eff: [][]float[][] = 0.6\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 680--680 \T1/ptm/m/it/10 killing_predecay_duration: Underfull \hbox (badness 10000) in paragraph at lines 680--680 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 680--680 \T1/ptm/m/it/10 killing_decay_rate: [][]float[][] Underfull \hbox (badness 10000) in paragraph at lines 680--680 \T1/ptm/m/it/10 = 0.000136986301369863\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 680--680 \T1/ptm/m/it/10 tsteps_btwn_repetitions: Underfull \hbox (badness 10000) in paragraph at lines 680--680 [][]\T1/ptm/m/it/10 int[][] = 1095\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-ceiv- Underfull \hbox (badness 10000) in paragraph at lines 680--680 \T1/ptm/m/it/10 ing_itn_event_name: [][]str[][] Underfull \hbox (badness 10000) in paragraph at lines 691--695 \T1/ptm/m/n/10 ex-am-ple, \T1/pcr/m/n/10 [{"coverage":1,"min": 1, "max": 10}, { "coverage":1, Underfull \hbox (badness 10000) in paragraph at lines 691--695 \T1/pcr/m/n/10 "min": 11, "max": 50},{ "coverage":0.5, "birth":"birth", [10] Underfull \hbox (badness 10000) in paragraph at lines 748--748 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day: [][]int[][] = Underfull \hbox (badness 10000) in paragraph at lines 748--748 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 event_name: [][]str[][] = Underfull \hbox (badness 10000) in paragraph at lines 748--748 \TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age_by_ages: Underfull \hbox (badness 10000) in paragraph at lines 748--748 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 itn_bednet: Overfull \hbox (60.91318pt too wide) in paragraph at lines 748--748 [][]\T1/ptm/m/n/10 emodpy_malaria.interventions.bednet.Bednet[][] Underfull \hbox (badness 10000) in paragraph at lines 748--748 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 748--748 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 trig- Underfull \hbox (badness 10000) in paragraph at lines 748--748 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lis-ten- Underfull \hbox (badness 10000) in paragraph at lines 748--748 \T1/ptm/m/it/10 check_eligibility_at_trigger: Underfull \hbox (badness 10000) in paragraph at lines 754--754 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start: [][]int[][] = 0\T 1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er- Underfull \hbox (badness 10000) in paragraph at lines 754--754 [][]\T1/ptm/m/it/10 emod_api.schema_to_class.ReadOnlyDict[][] Underfull \hbox (badness 7308) in paragraph at lines 754--754 [][]\T1/ptm/m/it/10 str[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 node_propert y_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 754--754 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ind_propert y_restrictions: Underfull \hbox (badness 6477) in paragraph at lines 754--754 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 trig-gered_ campaign_delay: Underfull \hbox (badness 10000) in paragraph at lines 767--771 \T1/ptm/m/n/10 ex-am-ple, \T1/pcr/m/n/10 [{"coverage":1,"min": 1, "max": 10}, { "coverage":1, Underfull \hbox (badness 10000) in paragraph at lines 767--771 \T1/pcr/m/n/10 "min": 11, "max": 50},{ "coverage":0.5, "birth":"birth", [11] Underfull \hbox (badness 10000) in paragraph at lines 829--839 \T1/ptm/m/n/10 camp = DTK-Con-fig-Builder.from_defaults(sim_example) cov-er-age _by_ages = [{^^Pcov-er-age^^Q: 1, Underfull \hbox (badness 10000) in paragraph at lines 829--839 \T1/ptm/m/n/10 ^^Pmin^^Q: 1, ^^Pmax^^Q: 10}, {^^Pcov-er-age^^Q: 0.75, ^^Pmin^^Q : 11, ^^Pmax^^Q: 60}] add_ITN(camp, Underfull \hbox (badness 10000) in paragraph at lines 829--839 \T1/ptm/m/n/10 start=1, cov-er-age_by_ages, nodeIDs=[2, 5, 7, 21], node_propert y_restrictions=[{^^PPlace^^Q: ^^PUr- Underfull \hbox (badness 10000) in paragraph at lines 829--839 \T1/ptm/m/n/10 ban^^Q}], ind_property_restrictions=[{^^PBiting_Risk^^Q: ^^PHigh ^^Q], trig-gered_campaign_delay=14, trig- [12] Underfull \hbox (badness 10000) in paragraph at lines 850--850 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Di-ag-nos- Overfull \hbox (50.004pt too wide) in paragraph at lines 850--850 \T1/ptm/m/it/10 tic_Type=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 BLOOD_SMEAR_PARASITE S\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 850--850 \T1/ptm/m/it/10 Mea-sure-ment_Sensitivity=0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 914--914 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 914--914 \T1/ptm/m/it/10 start_day\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 914--914 \T1/ptm/m/it/10 trig-ger\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 914--914 \T1/ptm/m/it/10 de-lay\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 914--914 \T1/ptm/m/it/10 in-ter- Underfull \hbox (badness 10000) in paragraph at lines 914--914 \T1/ptm/m/it/10 ven-tion\T1/ptm/m/n/10 , Overfull \hbox (36.58427pt too wide) in paragraph at lines 914--914 \T1/ptm/m/it/10 ip_targeting=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 914--914 \T1/ptm/m/it/10 cov-er- Underfull \hbox (badness 10000) in paragraph at lines 914--914 \T1/ptm/m/it/10 age=1.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 914--914 \T1/ptm/m/it/10 tar- Overfull \hbox (22.85468pt too wide) in paragraph at lines 914--914 \T1/ptm/m/it/10 get_age_min=0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 914--914 \T1/ptm/m/it/10 tar- Overfull \hbox (45.51472pt too wide) in paragraph at lines 914--914 \T1/ptm/m/it/10 get_age_max=125.0\T1/pcr/m/n/10 ) [13] Overfull \hbox (83.18481pt too wide) in paragraph at lines 961--961 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , Overfull \hbox (82.35448pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 start_day: Overfull \hbox (51.8048pt too wide) in paragraph at lines 961--961 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (47.99501pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 = Overfull \hbox (48.74501pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 1\T1/ptm/m/n/10 , Overfull \hbox (59.02464pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 trig- Overfull \hbox (117.814pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 ger_condition_list: Overfull \hbox (53.47458pt too wide) in paragraph at lines 961--961 [][]\T1/ptm/m/it/10 list[][] Overfull \hbox (47.99501pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 = Overfull \hbox (64.85487pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (54.01491pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 de- Overfull \hbox (56.79494pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 mo- Overfull \hbox (116.73457pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 graphic_coverage: Overfull \hbox (59.0249pt too wide) in paragraph at lines 961--961 [][]\T1/ptm/m/it/10 float[][] Overfull \hbox (47.99501pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 = Overfull \hbox (56.24501pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 1.0\T1/ptm/m/n/10 , Overfull \hbox (80.6847pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 node_ids: Overfull \hbox (53.47458pt too wide) in paragraph at lines 961--961 [][]\T1/ptm/m/it/10 list[][] Overfull \hbox (47.99501pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 = Overfull \hbox (64.85487pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (146.53346pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 ind_property_restrictions: Overfull \hbox (53.47458pt too wide) in paragraph at lines 961--961 [][]\T1/ptm/m/it/10 list[][] Overfull \hbox (47.99501pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 = Overfull \hbox (64.85487pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (153.19351pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 node_property_restrictions: Overfull \hbox (53.47458pt too wide) in paragraph at lines 961--961 [][]\T1/ptm/m/it/10 list[][] Overfull \hbox (47.99501pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 = Overfull \hbox (64.85487pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (56.0448pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 tar- Overfull \hbox (95.93463pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 get_age_min: Overfull \hbox (51.8048pt too wide) in paragraph at lines 961--961 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (47.99501pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 = Overfull \hbox (48.74501pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , Overfull \hbox (56.0448pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 tar- Overfull \hbox (97.59468pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 get_age_max: Overfull \hbox (51.8048pt too wide) in paragraph at lines 961--961 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (47.99501pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 = Overfull \hbox (58.74501pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 125\T1/ptm/m/n/10 , Overfull \hbox (56.0448pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 tar- Overfull \hbox (89.3646pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 get_gender: Overfull \hbox (51.80469pt too wide) in paragraph at lines 961--961 [][]\T1/ptm/m/it/10 str[][] Overfull \hbox (47.99501pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 = Overfull \hbox (59.69456pt too wide) in paragraph at lines 961--961 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 All\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (55.13475pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 ini- Overfull \hbox (92.9145pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 tial_amount: Overfull \hbox (51.8048pt too wide) in paragraph at lines 961--961 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (47.99501pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 = Overfull \hbox (48.74501pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 6\T1/ptm/m/n/10 , Overfull \hbox (128.46431pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 amount_in_shipment: Overfull \hbox (51.8048pt too wide) in paragraph at lines 961--961 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (47.99501pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 = Overfull \hbox (93.74501pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 2147480000\T1/ptm/m/n/10 , Overfull \hbox (145.67392pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 days_between_shipments: Overfull \hbox (59.0249pt too wide) in paragraph at lines 961--961 [][]\T1/ptm/m/it/10 float[][] Overfull \hbox (47.99501pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 = Overfull \hbox (48.74501pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 7\T1/ptm/m/n/10 , Overfull \hbox (54.57497pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 du- Overfull \hbox (53.31496pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 ra- Overfull \hbox (60.13475pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 tion: Overfull \hbox (59.0249pt too wide) in paragraph at lines 961--961 [][]\T1/ptm/m/it/10 float[][] Overfull \hbox (47.99501pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 = Overfull \hbox (97.43495pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 3.40282e+38\T1/ptm/m/n/10 , Overfull \hbox (52.35486pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 in- Overfull \hbox (55.48474pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 ter- Overfull \hbox (58.45485pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 ven- Overfull \hbox (89.57469pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 tion_config: Overfull \hbox (55.68495pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 any Overfull \hbox (47.99501pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 = Overfull \hbox (64.85487pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (147.144pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 max_distributed_per_day: Overfull \hbox (51.8048pt too wide) in paragraph at lines 961--961 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (47.99501pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 = Overfull \hbox (93.74501pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 2147480000\T1/ptm/m/n/10 , Overfull \hbox (86.5846pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 max_stock: Overfull \hbox (51.8048pt too wide) in paragraph at lines 961--961 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (47.99501pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 = Overfull \hbox (93.74501pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 2147480000\T1/ptm/m/n/10 , Overfull \hbox (61.80467pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 wait- Overfull \hbox (88.46458pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 ing_period: Overfull \hbox (51.8048pt too wide) in paragraph at lines 961--961 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (47.99501pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 = Overfull \hbox (52.24501pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 0\T1/pcr/m/n/10 ) [14] Overfull \vbox (355.66753pt too high) has occurred while \output is active [15] [16] Overfull \hbox (31.21352pt too wide) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 tsteps_btwn_repetitions: Underfull \hbox (badness 10000) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 get: [][]ob-ject[][] Underfull \hbox (badness 10000) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Ev-ery-one\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 6364) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 start_day: [][]int[][] Underfull \hbox (badness 5203) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 di-ag-nos- Overfull \hbox (63.55446pt too wide) in paragraph at lines 1050--1050 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 BLOOD_SMEAR_PARASITES\TS1/ptm/m/it/10 '\T1/pt m/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 di-ag-nos- Underfull \hbox (badness 10000) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 tic_threshold: Underfull \hbox (badness 10000) in paragraph at lines 1050--1050 [][]\T1/ptm/m/it/10 float[][] = 40\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 mea-sure- Overfull \hbox (1.01384pt too wide) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 ment_sensitivity: Underfull \hbox (badness 10000) in paragraph at lines 1050--1050 [][]\T1/ptm/m/it/10 float[][] = 0.1\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 event_name: Underfull \hbox (badness 10000) in paragraph at lines 1050--1050 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Di-ag- Underfull \hbox (badness 10000) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 nos-tic Sur-vey\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 6364) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 node_ids: [][]list[][] Overfull \hbox (27.58405pt too wide) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 tive_diagnosis_configs: Underfull \hbox (badness 10000) in paragraph at lines 1050--1050 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 neg-a- Overfull \hbox (27.58405pt too wide) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 tive_diagnosis_configs: Overfull \hbox (6.95406pt too wide) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 ceived_test_event: Underfull \hbox (badness 10000) in paragraph at lines 1050--1050 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Re- Underfull \hbox (badness 10000) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 ceived_Test\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 IP_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1050--1050 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 NP_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1050--1050 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 dis-qual-i-fy- Underfull \hbox (badness 10000) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 ing_properties: Overfull \hbox (9.814pt too wide) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 ger_condition_list: Underfull \hbox (badness 10000) in paragraph at lines 1050--1050 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 lis-ten- Underfull \hbox (badness 10000) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 ing_duration: Overfull \hbox (29.97432pt too wide) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 gered_campaign_delay: Underfull \hbox (badness 10000) in paragraph at lines 1050--1050 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , Overfull \hbox (47.68343pt too wide) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 check_eligibility_at_trigger: Overfull \hbox (9.71407pt too wide) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 pire_recent_drugs: [17] Underfull \hbox (badness 10000) in paragraph at lines 1083--1086 []\T1/pcr/b/n/10 diagnostic_type \T1/ptm/m/n/10 ^^U Type of malaria di-ag-nos-t ic used. De-fault is Underfull \hbox (badness 10000) in paragraph at lines 1125--1128 []\T1/ptm/m/n/10 In ga-me-to-cytes/microliter, use mea-sure- Underfull \hbox (badness 10000) in paragraph at lines 1148--1150 []\T1/pcr/b/n/10 measurement_sensitivity \T1/ptm/m/n/10 ^^U Set-ting for \T1/pt m/b/n/10 Mea-sure-ment_Sensitivity \T1/ptm/m/n/10 in [18] Underfull \hbox (badness 10000) in paragraph at lines 1171--1176 []\T1/pcr/b/n/10 IP_restrictions \T1/ptm/m/n/10 ^^U List of In-di-vid-u-al-Prop -erty key:value pairs that Underfull \hbox (badness 10000) in paragraph at lines 1171--1176 \T1/ptm/m/n/10 in-di-vid-u-als must have to re-ceive the di-ag-nos-tic in-ter-v en-tion. For Underfull \hbox (badness 10000) in paragraph at lines 1171--1176 \T1/ptm/m/n/10 ex-am-ple, \T1/pcr/m/n/10 [{"IndividualProperty1":"PropertyValue 1"}, Underfull \hbox (badness 10000) in paragraph at lines 1178--1183 []\T1/pcr/b/n/10 NP_restrictions \T1/ptm/m/n/10 ^^U List of Node-Prop-erty key: value pairs Underfull \hbox (badness 10000) in paragraph at lines 1178--1183 \T1/ptm/m/n/10 that nodes must have to re-ceive the di-ag-nos-tic in-ter-ven-ti on. Underfull \hbox (badness 10000) in paragraph at lines 1178--1183 \T1/ptm/m/n/10 For ex-am-ple, \T1/pcr/m/n/10 [{"NodeProperty1":"PropertyValue1" }, Underfull \hbox (badness 10000) in paragraph at lines 1185--1189 []\T1/pcr/b/n/10 disqualifying_properties \T1/ptm/m/n/10 ^^U List of In-di-vid- u-al-Prop-erty Underfull \hbox (badness 10000) in paragraph at lines 1185--1189 \T1/ptm/m/n/10 key:value pairs that cause an in-ter-ven-tion to be aborted. For ex- Underfull \hbox (badness 10000) in paragraph at lines 1185--1189 \T1/ptm/m/n/10 am-ple, \T1/pcr/m/n/10 [{"IndividualProperty1":"PropertyValue1"} , Underfull \hbox (badness 10000) in paragraph at lines 1208--1211 []\T1/pcr/b/n/10 expire_recent_drugs \T1/ptm/m/n/10 ^^U Adds \T1/pcr/m/n/10 [{" DrugStatus:None"}] \T1/ptm/m/n/10 to \T1/ptm/b/n/10 Prop- [19] Underfull \hbox (badness 10000) in paragraph at lines 1297--1297 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1297--1297 \T1/ptm/m/it/10 drug_code: Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cam- Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 paign_type: Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 MDA\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 6775) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_days: Overfull \hbox (19.21352pt too wide) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 tsteps_btwn_repetitions: Underfull \hbox (badness 7344) in paragraph at lines 1328--1328 [][]\T1/ptm/m/it/10 int[][] = 60\T1/ptm/m/n/10 , \T1/ptm/m/it/10 di-ag- Overfull \hbox (51.55446pt too wide) in paragraph at lines 1328--1328 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 BLOOD_SMEAR_PARASITES\TS1/ptm/m/it/10 '\T1/pt m/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 di-ag-nos- Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 = 40\T1/ptm/m/n/10 , \T1/ptm/m/it/10 mea-sure- Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 ment_sensitivity: Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 [][]\T1/ptm/m/it/10 float[][] = 0.1\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 fmda_radius: Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , Overfull \hbox (6.22408pt too wide) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 node_selection_type: Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 DIS- Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 TANCE_ONLY\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 trig-ger_coverage: Underfull \hbox (badness 5667) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 balls: [][]int[][] = 0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 treat-ment_delay: Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 trig- Overfull \hbox (17.97432pt too wide) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 gered_campaign_delay: Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 tar-get_group: Overfull \hbox (33.88365pt too wide) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 drug_ineligibility_duration: Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , Overfull \hbox (33.19351pt too wide) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Overfull \hbox (26.53346pt too wide) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 dis-qual-i-fy- Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 ing_properties: Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 ger_condition_list: Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 ten-ing_duration: Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 ent_drug_configs: Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 get_residents_only: Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 [][]\T1/ptm/m/it/10 int[][] = 1\T1/ptm/m/n/10 , Overfull \hbox (35.68343pt too wide) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 check_eligibility_at_trigger: Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 [][]\T1/ptm/m/it/10 bool[][] = Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 False\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-ceiv- Overfull \hbox (144.47322pt too wide) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 ing_drugs_event_name=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Received _Campaign_Drugs\TS1/ptm/m/it/10 '\T1/pcr/m/n/10 ) [20] [21] [22] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pcr.fd) Underfull \hbox (badness 10000) in paragraph at lines 1479--1482 []\T1/pcr/b/n/10 ind_property_restrictions \T1/ptm/m/n/10 ^^U The set-ting for \T1/ptm/b/n/10 Prop- Underfull \hbox (badness 10000) in paragraph at lines 1524--1524 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_days: [][]list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1524--1524 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age: [][]float[][] = Underfull \hbox (badness 10000) in paragraph at lines 1524--1524 \T1/ptm/m/it/10 1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 drug_configs: [][]list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1524--1524 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-ceiv-ing_drugs_event: Overfull \hbox (57.71327pt too wide) in paragraph at lines 1524--1524 \T1/ptm/m/it/10 emod_api.interventions.common.BroadcastEvent Underfull \hbox (badness 10000) in paragraph at lines 1524--1524 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 rep-e-ti-tions: [][]int[ ][] = Underfull \hbox (badness 10000) in paragraph at lines 1524--1524 \T1/ptm/m/it/10 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tsteps_btwn_repetitions: Underfull \hbox (badness 6348) in paragraph at lines 1524--1524 [][]\T1/ptm/m/it/10 int[][] = 60\T1/ptm/m/n/10 , \T1/ptm/m/it/10 node_ids: [][] list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1524--1524 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ex-pire_recent_drugs: Overfull \hbox (86.50304pt too wide) in paragraph at lines 1524--1524 \T1/ptm/m/it/10 emod_api.interventions.common.PropertyValueChanger Underfull \hbox (badness 10000) in paragraph at lines 1524--1524 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 6032) in paragraph at lines 1524--1524 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1524--1524 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 dis-qual-i- fy- Underfull \hbox (badness 10000) in paragraph at lines 1524--1524 \T1/ptm/m/it/10 ing_properties: [][]list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1524--1524 \T1/ptm/m/it/10 trig-ger_condition_list: [][]list[][] = [23] Underfull \hbox (badness 10000) in paragraph at lines 1539--1539 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_days: [][]list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1539--1539 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age: [][]float[][] = Underfull \hbox (badness 10000) in paragraph at lines 1539--1539 \T1/ptm/m/it/10 1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 drug_configs: [][]list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1539--1539 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-ceiv-ing_drugs_event: Overfull \hbox (63.71327pt too wide) in paragraph at lines 1539--1539 \T1/ptm/m/it/10 emod_api.interventions.common.BroadcastEvent Underfull \hbox (badness 10000) in paragraph at lines 1539--1539 \T1/ptm/m/it/10 tsteps_btwn_repetitions: [][]int[][] Underfull \hbox (badness 7504) in paragraph at lines 1539--1539 \T1/ptm/m/it/10 = 60\T1/ptm/m/n/10 , \T1/ptm/m/it/10 treat-ment_delay: [][]int[ ][] Underfull \hbox (badness 10000) in paragraph at lines 1539--1539 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 BLOOD_SMEAR_PARASITES\TS1/ptm/m/it/10 '\T1/pt m/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1539--1539 \T1/ptm/m/it/10 40\T1/ptm/m/n/10 , \T1/ptm/m/it/10 mea-sure-ment_sensitivity: Underfull \hbox (badness 6063) in paragraph at lines 1539--1539 [][]\T1/ptm/m/it/10 float[][] = 0.1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 node_ids: [ ][]list[][] Overfull \hbox (92.50304pt too wide) in paragraph at lines 1539--1539 \T1/ptm/m/it/10 emod_api.interventions.common.PropertyValueChanger Underfull \hbox (badness 10000) in paragraph at lines 1539--1539 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1539--1539 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1539--1539 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1539--1539 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar-get_gro up: Underfull \hbox (badness 10000) in paragraph at lines 1539--1539 \T1/ptm/m/it/10 any = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Ev-ery-one\TS1/ptm/m/it /10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 trig- Underfull \hbox (badness 10000) in paragraph at lines 1539--1539 \T1/ptm/m/it/10 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 check_eligibility_at_trigger: Underfull \hbox (badness 10000) in paragraph at lines 1540--1543 \T1/ptm/m/n/10 Add an MSAT (mass screen-ing and treat-ment) drug in-ter-ven-tio n to your cam-paign. See [24] Underfull \hbox (badness 10000) in paragraph at lines 1554--1554 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_days: [][]list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1554--1554 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 trig-ger_coverage: Underfull \hbox (badness 7221) in paragraph at lines 1554--1554 [][]\T1/ptm/m/it/10 float[][] = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age: [ ][]float[][] Underfull \hbox (badness 7595) in paragraph at lines 1554--1554 \T1/ptm/m/it/10 = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 drug_configs: [][]list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1554--1554 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-ceiv-ing_drugs_event: Overfull \hbox (63.71327pt too wide) in paragraph at lines 1554--1554 \T1/ptm/m/it/10 emod_api.interventions.common.BroadcastEvent Underfull \hbox (badness 10000) in paragraph at lines 1554--1554 \T1/ptm/m/it/10 tsteps_btwn_repetitions: [][]int[][] Underfull \hbox (badness 10000) in paragraph at lines 1554--1554 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 BLOOD_SMEAR_PARASITES\TS1/ptm/m/it/10 '\T1/pt m/m/n/10 , Overfull \hbox (92.50304pt too wide) in paragraph at lines 1554--1554 \T1/ptm/m/it/10 emod_api.interventions.common.PropertyValueChanger Underfull \hbox (badness 10000) in paragraph at lines 1554--1554 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1554--1554 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1554--1554 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1554--1554 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar-get_gro up: Underfull \hbox (badness 10000) in paragraph at lines 1554--1554 \T1/ptm/m/it/10 any = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Ev-ery-one\TS1/ptm/m/it /10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 trig- Underfull \hbox (badness 7869) in paragraph at lines 1555--1558 \T1/ptm/m/n/10 Add an fMDA (fo-cal mass drug ad-min-is-tra-tion) drug in-ter-ve n-tion to your cam-paign. See Underfull \hbox (badness 10000) in paragraph at lines 1569--1569 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day: [][]int[][] = Underfull \hbox (badness 6141) in paragraph at lines 1569--1569 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age: [][]float[][] = 1 \T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1569--1569 \T1/ptm/m/it/10 re-ceiv-ing_drugs_event: Overfull \hbox (75.71327pt too wide) in paragraph at lines 1569--1569 \T1/ptm/m/it/10 emod_api.interventions.common.BroadcastEvent Overfull \hbox (9.55446pt too wide) in paragraph at lines 1569--1569 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 BLOOD_SMEAR_PARASITES\TS1/ptm/m/it/10 '\T1/pt m/m/n/10 , Overfull \hbox (104.50304pt too wide) in paragraph at lines 1569--1569 \T1/ptm/m/it/10 emod_api.interventions.common.PropertyValueChanger Underfull \hbox (badness 10000) in paragraph at lines 1569--1569 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1569--1569 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1569--1569 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1569--1569 \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1569--1569 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 dis-qual-i- fy- [25] Underfull \hbox (badness 10000) in paragraph at lines 1584--1584 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day: [][]int[][] = Underfull \hbox (badness 10000) in paragraph at lines 1584--1584 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age: [][]float[][] = 1 \T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1584--1584 \T1/ptm/m/it/10 re-ceiv-ing_drugs_event: Overfull \hbox (69.71327pt too wide) in paragraph at lines 1584--1584 \T1/ptm/m/it/10 emod_api.interventions.common.BroadcastEvent Underfull \hbox (badness 7613) in paragraph at lines 1584--1584 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lis-ten-ing_duration: Underfull \hbox (badness 10000) in paragraph at lines 1584--1584 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 trig-ger_covera ge: Underfull \hbox (badness 10000) in paragraph at lines 1584--1584 \T1/ptm/m/it/10 = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 node_selection_type: Underfull \hbox (badness 10000) in paragraph at lines 1584--1584 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 DIS-TANCE_ONLY\ TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1584--1584 \T1/ptm/m/it/10 node_ids: [][]list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1584--1584 \T1/ptm/m/it/10 ex-pire_recent_drugs: Overfull \hbox (98.50304pt too wide) in paragraph at lines 1584--1584 \T1/ptm/m/it/10 emod_api.interventions.common.PropertyValueChanger Underfull \hbox (badness 10000) in paragraph at lines 1584--1584 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1584--1584 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1584--1584 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1584--1584 \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1584--1584 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 dis-qual-i- fy- Underfull \hbox (badness 10000) in paragraph at lines 1599--1599 \T1/ptm/m/it/10 TANCE_ONLY\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ev ent_trigger: [26] Underfull \hbox (badness 5756) in paragraph at lines 1631--1631 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 daily_eir: [][]list[][] Underfull \hbox (badness 5091) in paragraph at lines 1665--1665 [][]\T1/ptm/m/it/10 int[][] = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 node_ids: [][]l ist[][] = None\T1/ptm/m/n/10 , [27] Underfull \hbox (badness 10000) in paragraph at lines 1705--1705 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1705--1705 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , [28] Underfull \hbox (badness 10000) in paragraph at lines 1778--1778 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1778--1778 \T1/ptm/m/it/10 start_day: [][]int[][] Underfull \hbox (badness 10000) in paragraph at lines 1778--1778 \T1/ptm/m/it/10 = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er- Overfull \hbox (11.51352pt too wide) in paragraph at lines 1778--1778 \T1/ptm/m/it/10 killing_initial_effect: Underfull \hbox (badness 10000) in paragraph at lines 1778--1778 [][]\T1/ptm/m/it/10 float[][] = 1\T1/ptm/m/n/10 , Overfull \hbox (38.20403pt too wide) in paragraph at lines 1778--1778 \T1/ptm/m/it/10 killing_box_duration_days: Underfull \hbox (badness 10000) in paragraph at lines 1778--1778 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , Overfull \hbox (98.1333pt too wide) in paragraph at lines 1778--1778 \T1/ptm/m/it/10 killing_exponential_decay_constant_days: Underfull \hbox (badness 10000) in paragraph at lines 1778--1778 [][]\T1/ptm/m/it/10 int[][] = 90\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Overfull \hbox (13.73363pt too wide) in paragraph at lines 1778--1778 \T1/ptm/m/it/10 pelling_initial_effect: Underfull \hbox (badness 10000) in paragraph at lines 1778--1778 [][]\T1/ptm/m/it/10 float[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Overfull \hbox (40.42413pt too wide) in paragraph at lines 1778--1778 \T1/ptm/m/it/10 pelling_box_duration_days: Underfull \hbox (badness 10000) in paragraph at lines 1778--1778 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Overfull \hbox (100.35341pt too wide) in paragraph at lines 1778--1778 \T1/ptm/m/it/10 pelling_exponential_decay_constant_days: [29] Underfull \hbox (badness 10000) in paragraph at lines 1838--1838 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day\T1/ptm/m/n /10 , Underfull \hbox (badness 10000) in paragraph at lines 1847--1847 []\T1/ptm/m/it/10 schema_path_container\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1847--1847 [][]\T1/ptm/m/it/10 float[][] = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-mo- Underfull \hbox (badness 10000) in paragraph at lines 1847--1847 \T1/ptm/m/it/10 killing_exponential_decay_rate: Underfull \hbox (badness 5161) in paragraph at lines 1890--1890 \T1/ptm/m/it/10 = 1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 killing_effect: [][]float [][] [30] Underfull \hbox (badness 10000) in paragraph at lines 1919--1921 \T1/ptm/m/n/10 TER_VEGETATION^^Q, ^^PHU-MAN_POPULATION^^Q, ^^PCON-STANT^^Q, ^^P BRACK- Underfull \hbox (badness 10000) in paragraph at lines 1946--1946 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , [31] Underfull \hbox (badness 10000) in paragraph at lines 1963--1963 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1963--1963 \T1/ptm/m/it/10 re-leased_number: Underfull \hbox (badness 5954) in paragraph at lines 1963--1963 [][]\T1/ptm/m/it/10 int[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 1963--1963 \T1/ptm/m/it/10 leased_fraction: Underfull \hbox (badness 10000) in paragraph at lines 1963--1963 \T1/ptm/m/it/10 leased_infectious: Underfull \hbox (badness 10000) in paragraph at lines 1963--1963 [][]\T1/ptm/m/it/10 float[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 1963--1963 \T1/ptm/m/it/10 leased_species: Underfull \hbox (badness 10000) in paragraph at lines 1963--1963 \T1/ptm/m/it/10 re-leased_genome: Underfull \hbox (badness 10000) in paragraph at lines 1963--1963 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1983--1985 []\T1/pcr/b/n/10 released_infectious \T1/ptm/m/n/10 ^^U The frac-tion of vec-to rs re-leased that Underfull \hbox (badness 10000) in paragraph at lines 1983--1985 \T1/ptm/m/n/10 are to be in-fec-tious. One can only use this fea-ture when Overfull \hbox (16.27205pt too wide) in paragraph at lines 1983--1985 \T1/ptm/m/n/10 `Malaria_Model'!='MALARIA_MECHANISTIC_MODEL_WITH_PARASITE_GENETI CS' Underfull \hbox (badness 10000) in paragraph at lines 2009--2009 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Overfull \hbox (16.35448pt too wide) in paragraph at lines 2009--2009 \T1/ptm/m/it/10 start_day: Underfull \hbox (badness 10000) in paragraph at lines 2009--2009 [][]\T1/ptm/m/it/10 int[][] Underfull \hbox (badness 10000) in paragraph at lines 2009--2009 \T1/ptm/m/it/10 = 1\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2009--2009 \T1/ptm/m/it/10 file- Overfull \hbox (2.35487pt too wide) in paragraph at lines 2009--2009 \T1/ptm/m/it/10 None\T1/pcr/m/n/10 ) [32] Underfull \hbox (badness 10000) in paragraph at lines 2035--2035 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2035--2035 \T1/ptm/m/it/10 start_day: [][]int[][] Underfull \hbox (badness 10000) in paragraph at lines 2035--2035 \T1/ptm/m/it/10 = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-mo- Overfull \hbox (2.73457pt too wide) in paragraph at lines 2035--2035 \T1/ptm/m/it/10 graphic_coverage: Overfull \hbox (14.36418pt too wide) in paragraph at lines 2035--2035 \T1/ptm/m/it/10 get_num_individuals: Underfull \hbox (badness 10000) in paragraph at lines 2035--2035 [][]\T1/ptm/m/it/10 int[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2035--2035 \T1/ptm/m/it/10 node_ids: [][]list[][] Overfull \hbox (52.97314pt too wide) in paragraph at lines 2035--2035 \T1/ptm/m/it/10 timesteps_between_repetitions: Underfull \hbox (badness 10000) in paragraph at lines 2035--2035 [][]\T1/ptm/m/it/10 int[][] = 365\T1/ptm/m/n/10 , Overfull \hbox (32.53346pt too wide) in paragraph at lines 2035--2035 \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 2035--2035 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Overfull \hbox (39.19351pt too wide) in paragraph at lines 2035--2035 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 2035--2035 \T1/ptm/m/it/10 get_age_min: Underfull \hbox (badness 10000) in paragraph at lines 2035--2035 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar- Underfull \hbox (badness 10000) in paragraph at lines 2035--2035 \T1/ptm/m/it/10 get_age_max: Underfull \hbox (badness 10000) in paragraph at lines 2035--2035 \T1/ptm/m/it/10 get_gender: Underfull \hbox (badness 5359) in paragraph at lines 2035--2035 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 All\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ig- Underfull \hbox (badness 10000) in paragraph at lines 2035--2035 \T1/ptm/m/it/10 nore_immunity: Underfull \hbox (badness 10000) in paragraph at lines 2035--2035 [][]\T1/ptm/m/it/10 bool[][] = True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2035--2035 \T1/ptm/m/it/10 in-cu-ba- Overfull \hbox (16.02399pt too wide) in paragraph at lines 2035--2035 \T1/ptm/m/it/10 tion_period_override: Underfull \hbox (badness 5893) in paragraph at lines 2059--2061 []\T1/pcr/b/n/10 repetitions \T1/ptm/m/n/10 ^^U The num-ber of times an in-ter- ven-tion is given, used with [33] Overfull \hbox (5.18481pt too wide) in paragraph at lines 2114--2114 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , Overfull \hbox (4.35448pt too wide) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 start_day: Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 de-mo- Overfull \hbox (38.73457pt too wide) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 graphic_coverage: Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 [][]\T1/ptm/m/it/10 float[][] = Overfull \hbox (50.36418pt too wide) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 get_num_individuals: Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 [][]\T1/ptm/m/it/10 int[][] = Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (2.6847pt too wide) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 node_ids: Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 rep-e-ti- Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 tions: Overfull \hbox (88.97314pt too wide) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 timesteps_between_repetitions: Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 [][]\T1/ptm/m/it/10 int[][] Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 = 365\T1/ptm/m/n/10 , Overfull \hbox (68.53346pt too wide) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (75.19351pt too wide) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 tar- Overfull \hbox (17.93463pt too wide) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 get_age_min: Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 [][]\T1/ptm/m/it/10 int[][] = Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar- Overfull \hbox (19.59468pt too wide) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 get_age_max: Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 [][]\T1/ptm/m/it/10 int[][] = Overfull \hbox (11.3646pt too wide) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 get_gender: Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 [][]\T1/ptm/m/it/10 str[][] = Overfull \hbox (26.75435pt too wide) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 nore_immunity: Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 [][]\T1/ptm/m/it/10 bool[][] = Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 in-cu-ba- Overfull \hbox (52.02399pt too wide) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 tion_period_override: Underfull \hbox (badness 5077) in paragraph at lines 2114--2114 [][]\T1/ptm/m/it/10 int[][] = - Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cre- Overfull \hbox (90.54375pt too wide) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 ate_nucleotide_sequence_from: Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 [][]\T1/ptm/m/it/10 str[][] = Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 BAR- Overfull \hbox (33.99452pt too wide) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 CODE_STRING\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 bar- Overfull \hbox (13.79442pt too wide) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 code_string: Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 [][]\T1/ptm/m/it/10 str[][] = Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (52.88371pt too wide) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 drug_resistant_string: Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 [][]\T1/ptm/m/it/10 str[][] = Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (43.23422pt too wide) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 msp_variant_value: Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 [][]\T1/ptm/m/it/10 int[][] = Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (64.34395pt too wide) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 pfemp1_variants_values: Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 bar- Overfull \hbox (155.51305pt too wide) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 code_allele_frequencies_per_genome_location: Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (194.60234pt too wide) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 drug_resistant_allele_frequencies_per_genome_location: Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 [][]\T1/ptm/m/it/10 list[][] = [34] Overfull \vbox (135.66997pt too high) has occurred while \output is active [35] Underfull \hbox (badness 5893) in paragraph at lines 2141--2143 []\T1/pcr/b/n/10 repetitions \T1/ptm/m/n/10 ^^U The num-ber of times an in-ter- ven-tion is given, used with [36] Overfull \hbox (11.18481pt too wide) in paragraph at lines 2230--2230 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , Overfull \hbox (10.35448pt too wide) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 start_day: Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 de-mo- Overfull \hbox (44.73457pt too wide) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 graphic_coverage: Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 [][]\T1/ptm/m/it/10 float[][] Underfull \hbox (badness 8151) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 = 1.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 tar- Overfull \hbox (56.36418pt too wide) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 get_num_individuals: Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 [][]\T1/ptm/m/it/10 int[][] = Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (8.6847pt too wide) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 node_ids: Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 rep-e-ti- Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 tions: Overfull \hbox (94.97314pt too wide) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 timesteps_between_repetitions: Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 [][]\T1/ptm/m/it/10 int[][] = Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 365\T1/ptm/m/n/10 , Overfull \hbox (74.53346pt too wide) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (81.19351pt too wide) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 tar- Overfull \hbox (23.93463pt too wide) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 get_age_min: Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 [][]\T1/ptm/m/it/10 int[][] = Overfull \hbox (25.59468pt too wide) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 get_age_max: Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 [][]\T1/ptm/m/it/10 int[][] = Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 125\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 tar- Overfull \hbox (17.3646pt too wide) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 get_gender: Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 [][]\T1/ptm/m/it/10 str[][] = Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 All\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 ig- Overfull \hbox (32.75435pt too wide) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 nore_immunity: Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 in-cu-ba- Overfull \hbox (58.02399pt too wide) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 tion_period_override: Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 [][]\T1/ptm/m/it/10 int[][] = Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 - 1\T1/ptm/m/n/10 , Overfull \hbox (10.34447pt too wide) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 irbc_type: Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 mi- Overfull \hbox (42.5643pt too wide) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 nor_epitope_type: Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (10.3446pt too wide) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 msp_type: Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 [][]\T1/ptm/m/it/10 int[][] = [37] Overfull \vbox (3.66997pt too high) has occurred while \output is active [38] Underfull \hbox (badness 5893) in paragraph at lines 2257--2259 []\T1/pcr/b/n/10 repetitions \T1/ptm/m/n/10 ^^U The num-ber of times an in-ter- ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 2315--2315 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day: Underfull \hbox (badness 10000) in paragraph at lines 2315--2315 [][]\T1/ptm/m/it/10 int[][] = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-mo- Underfull \hbox (badness 10000) in paragraph at lines 2315--2315 \T1/ptm/m/it/10 graphic_coverage: Underfull \hbox (badness 10000) in paragraph at lines 2315--2315 [][]\T1/ptm/m/it/10 float[][] = 1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar- Underfull \hbox (badness 10000) in paragraph at lines 2315--2315 \T1/ptm/m/it/10 get_num_individuals: Underfull \hbox (badness 10000) in paragraph at lines 2315--2315 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 rep-e- Underfull \hbox (badness 10000) in paragraph at lines 2315--2315 \T1/ptm/m/it/10 ti-tions: [][]int[][] = 1\T1/ptm/m/n/10 , Overfull \hbox (22.97314pt too wide) in paragraph at lines 2315--2315 \T1/ptm/m/it/10 timesteps_between_repetitions: Underfull \hbox (badness 10000) in paragraph at lines 2315--2315 [][]\T1/ptm/m/it/10 int[][] = 365\T1/ptm/m/n/10 , Overfull \hbox (2.53346pt too wide) in paragraph at lines 2315--2315 \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 2315--2315 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Overfull \hbox (9.19351pt too wide) in paragraph at lines 2315--2315 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 2315--2315 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar- Underfull \hbox (badness 10000) in paragraph at lines 2315--2315 \T1/ptm/m/it/10 get_age_min: [][]int[][] = [39] Underfull \hbox (badness 5893) in paragraph at lines 2341--2343 []\T1/pcr/b/n/10 repetitions \T1/ptm/m/n/10 ^^U The num-ber of times an in-ter- ven-tion is given, used with [40] Underfull \hbox (badness 10000) in paragraph at lines 2382--2382 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2382--2382 \T1/ptm/m/it/10 cide_name: Overfull \hbox (29.51352pt too wide) in paragraph at lines 2382--2382 \T1/ptm/m/it/10 killing_initial_effect: Underfull \hbox (badness 10000) in paragraph at lines 2382--2382 [][]\T1/ptm/m/it/10 float[][] = 1\T1/ptm/m/n/10 , Overfull \hbox (32.87419pt too wide) in paragraph at lines 2382--2382 \T1/ptm/m/it/10 killing_box_duration: Underfull \hbox (badness 10000) in paragraph at lines 2382--2382 [][]\T1/ptm/m/it/10 int[][] = 365\T1/ptm/m/n/10 , Overfull \hbox (74.87367pt too wide) in paragraph at lines 2382--2382 \T1/ptm/m/it/10 killing_exponential_decay_rate: Underfull \hbox (badness 10000) in paragraph at lines 2382--2382 [][]\T1/ptm/m/it/10 float[][] = 0\T1/ptm/m/n/10 , Overfull \hbox (59.18481pt too wide) in paragraph at lines 2424--2424 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , Overfull \hbox (55.38477pt too wide) in paragraph at lines 2424--2424 \T1/ptm/m/it/10 df=None\T1/ptm/m/n/10 , Overfull \hbox (58.35448pt too wide) in paragraph at lines 2424--2424 \T1/ptm/m/it/10 start_day: Overfull \hbox (27.8048pt too wide) in paragraph at lines 2424--2424 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (23.99501pt too wide) in paragraph at lines 2424--2424 \T1/ptm/m/it/10 = Overfull \hbox (24.74501pt too wide) in paragraph at lines 2424--2424 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , Overfull \hbox (33.53479pt too wide) in paragraph at lines 2424--2424 \T1/ptm/m/it/10 rep- Overfull \hbox (25.01491pt too wide) in paragraph at lines 2424--2424 \T1/ptm/m/it/10 e- Overfull \hbox (26.13475pt too wide) in paragraph at lines 2424--2424 \T1/ptm/m/it/10 ti- Overfull \hbox (40.02464pt too wide) in paragraph at lines 2424--2424 \T1/ptm/m/it/10 tions: Overfull \hbox (27.8048pt too wide) in paragraph at lines 2424--2424 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (23.99501pt too wide) in paragraph at lines 2424--2424 \T1/ptm/m/it/10 = Overfull \hbox (24.74501pt too wide) in paragraph at lines 2424--2424 \T1/ptm/m/it/10 1\T1/ptm/m/n/10 , Overfull \hbox (142.97314pt too wide) in paragraph at lines 2424--2424 \T1/ptm/m/it/10 timesteps_between_repetitions: Overfull \hbox (27.8048pt too wide) in paragraph at lines 2424--2424 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (23.99501pt too wide) in paragraph at lines 2424--2424 \T1/ptm/m/it/10 = Overfull \hbox (34.74501pt too wide) in paragraph at lines 2424--2424 \T1/ptm/m/it/10 365\T1/ptm/m/n/10 , Overfull \hbox (129.19351pt too wide) in paragraph at lines 2424--2424 \T1/ptm/m/it/10 node_property_restrictions: Overfull \hbox (29.47458pt too wide) in paragraph at lines 2424--2424 [][]\T1/ptm/m/it/10 list[][] Overfull \hbox (23.99501pt too wide) in paragraph at lines 2424--2424 \T1/ptm/m/it/10 = Overfull \hbox (44.35487pt too wide) in paragraph at lines 2424--2424 \T1/ptm/m/it/10 None\T1/pcr/m/n/10 ) [41] [42] Overfull \hbox (71.18481pt too wide) in paragraph at lines 2498--2498 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , Overfull \hbox (70.35448pt too wide) in paragraph at lines 2498--2498 \T1/ptm/m/it/10 start_day: Overfull \hbox (42.3048pt too wide) in paragraph at lines 2498--2498 [][]\T1/ptm/m/it/10 int[][]\T1/ptm/m/n/10 , Overfull \hbox (68.6847pt too wide) in paragraph at lines 2498--2498 \T1/ptm/m/it/10 node_ids: Overfull \hbox (43.97458pt too wide) in paragraph at lines 2498--2498 [][]\T1/ptm/m/it/10 list[][]\T1/ptm/m/n/10 , Overfull \hbox (50.35486pt too wide) in paragraph at lines 2498--2498 \T1/ptm/m/it/10 habi- Overfull \hbox (72.57431pt too wide) in paragraph at lines 2498--2498 \T1/ptm/m/it/10 tat_scales: Overfull \hbox (43.97458pt too wide) in paragraph at lines 2498--2498 [][]\T1/ptm/m/it/10 list[][]\T1/ptm/m/n/10 , Overfull \hbox (45.53479pt too wide) in paragraph at lines 2498--2498 \T1/ptm/m/it/10 rep- Overfull \hbox (37.01491pt too wide) in paragraph at lines 2498--2498 \T1/ptm/m/it/10 e- Overfull \hbox (38.13475pt too wide) in paragraph at lines 2498--2498 \T1/ptm/m/it/10 ti- Overfull \hbox (52.02464pt too wide) in paragraph at lines 2498--2498 \T1/ptm/m/it/10 tions: Overfull \hbox (42.3048pt too wide) in paragraph at lines 2498--2498 [][]\T1/ptm/m/it/10 int[][]\T1/ptm/m/n/10 , Overfull \hbox (154.97314pt too wide) in paragraph at lines 2498--2498 \T1/ptm/m/it/10 timesteps_between_repetitions: Overfull \hbox (42.3048pt too wide) in paragraph at lines 2498--2498 [][]\T1/ptm/m/it/10 int[][]\T1/ptm/m/n/10 , Overfull \hbox (141.19351pt too wide) in paragraph at lines 2498--2498 \T1/ptm/m/it/10 node_property_restrictions: Overfull \hbox (47.47458pt too wide) in paragraph at lines 2498--2498 [][]\T1/ptm/m/it/10 list[][]\T1/pcr/m/n/10 ) Underfull \hbox (badness 5893) in paragraph at lines 2526--2528 []\T1/pcr/b/n/10 repetitions \T1/ptm/m/n/10 ^^U The num-ber of times an in-ter- ven-tion is given, used with [43] Underfull \hbox (badness 10000) in paragraph at lines 2552--2552 \T1/ptm/m/it/10 = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 spray_coverage: Overfull \hbox (5.18481pt too wide) in paragraph at lines 2577--2577 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , Overfull \hbox (4.35448pt too wide) in paragraph at lines 2577--2577 \T1/ptm/m/it/10 start_day: Underfull \hbox (badness 10000) in paragraph at lines 2577--2577 \T1/ptm/m/it/10 file- Underfull \hbox (badness 10000) in paragraph at lines 2577--2577 \T1/ptm/m/it/10 name: Underfull \hbox (badness 10000) in paragraph at lines 2577--2577 [][]\T1/ptm/m/it/10 str[][] = [44] Underfull \hbox (badness 6893) in paragraph at lines 2594--2594 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day: [][]int[] [] = 0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2638--2638 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2658--2658 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Overfull \hbox (10.35448pt too wide) in paragraph at lines 2658--2658 \T1/ptm/m/it/10 start_day: Underfull \hbox (badness 10000) in paragraph at lines 2658--2658 \T1/ptm/m/it/10 tar-gets: Underfull \hbox (badness 10000) in paragraph at lines 2658--2658 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2658--2658 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2658--2658 \T1/ptm/m/it/10 drug: Underfull \hbox (badness 10000) in paragraph at lines 2658--2658 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2658--2658 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (8.6847pt too wide) in paragraph at lines 2658--2658 \T1/ptm/m/it/10 node_ids: Underfull \hbox (badness 10000) in paragraph at lines 2658--2658 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2658--2658 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (74.53346pt too wide) in paragraph at lines 2658--2658 \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 2658--2658 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2658--2658 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (81.88365pt too wide) in paragraph at lines 2658--2658 \T1/ptm/m/it/10 drug_ineligibility_duration: Underfull \hbox (badness 6204) in paragraph at lines 2658--2658 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 du- Underfull \hbox (badness 10000) in paragraph at lines 2658--2658 \T1/ptm/m/it/10 ra-tion: Underfull \hbox (badness 10000) in paragraph at lines 2658--2658 [][]\T1/ptm/m/it/10 int[][] = Underfull \hbox (badness 10000) in paragraph at lines 2658--2658 \T1/ptm/m/it/10 - 1\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2658--2658 \T1/ptm/m/it/10 broad- Overfull \hbox (41.29442pt too wide) in paragraph at lines 2658--2658 \T1/ptm/m/it/10 cast_event_name: Underfull \hbox (badness 10000) in paragraph at lines 2658--2658 [][]\T1/ptm/m/it/10 str[][] = Underfull \hbox (badness 10000) in paragraph at lines 2658--2658 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Re- Overfull \hbox (48.38399pt too wide) in paragraph at lines 2658--2658 \T1/ptm/m/it/10 ceived_Treatment\TS1/ptm/m/it/10 '\T1/pcr/m/n/10 ) [45] Underfull \hbox (badness 10000) in paragraph at lines 2674--2678 []\T1/pcr/b/n/10 of individuals to target with the intervention. Default is Underfull \hbox (badness 10000) in paragraph at lines 2674--2678 \T1/ptm/m/n/10 (\T1/pcr/m/sl/10 properties\T1/ptm/m/n/10 ) ^^U \T1/pcr/m/n/10 [ { "trigger":"NewClinicalCase","coverage":0. Underfull \hbox (badness 10000) in paragraph at lines 2674--2678 \T1/pcr/m/n/10 8,"agemin":15,"agemax":70, "seek":0.4,"rate":0.3}, Underfull \hbox (badness 10000) in paragraph at lines 2674--2678 \T1/pcr/m/n/10 {"trigger":"NewSevereCase","coverage":0.8,"seek":0.6, Underfull \hbox (badness 10000) in paragraph at lines 2692--2693 []\T1/pcr/b/n/10 must have to receive the intervention. For example, Underfull \hbox (badness 10000) in paragraph at lines 2692--2693 \T1/ptm/m/n/10 (\T1/pcr/m/sl/10 individuals\T1/ptm/m/n/10 ) ^^U \T1/pcr/m/n/10 ["IndividualProperty1:PropertyValue1", [46] Underfull \hbox (badness 10000) in paragraph at lines 2722--2722 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day: [][]int[][] = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 dis- Underfull \hbox (badness 10000) in paragraph at lines 2722--2722 \T1/ptm/m/it/10 0.0013698630136986301\T1/ptm/m/n/10 , \T1/ptm/m/it/10 killing_e ff: Underfull \hbox (badness 10000) in paragraph at lines 2722--2722 \T1/ptm/m/it/10 0.0006849315068493151\T1/ptm/m/n/10 , \T1/ptm/m/it/10 iv_name: Underfull \hbox (badness 10000) in paragraph at lines 2722--2722 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Us-ageDe-pen-de ntBed-net\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2722--2722 \T1/ptm/m/it/10 sonal_dependence: [][]dict[][] = None\T1/ptm/m/n/10 , [47] [48] Underfull \hbox (badness 10000) in paragraph at lines 2921--2921 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2921--2921 \T1/ptm/m/it/10 start_day\T1/ptm/m/n/10 , \T1/ptm/m/it/10 file- [49] Underfull \hbox (badness 10000) in paragraph at lines 2932--2932 [][]\T1/ptm/m/it/10 int[][] = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-mo- Underfull \hbox (badness 10000) in paragraph at lines 2932--2932 \T1/ptm/m/it/10 graphic_coverage: Underfull \hbox (badness 10000) in paragraph at lines 2932--2932 [][]\T1/ptm/m/it/10 float[][] = 1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar- Underfull \hbox (badness 10000) in paragraph at lines 2932--2932 \T1/ptm/m/it/10 get_num_individuals: Underfull \hbox (badness 10000) in paragraph at lines 2932--2932 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 rep- Underfull \hbox (badness 7273) in paragraph at lines 2932--2932 \T1/ptm/m/it/10 e-ti-tions: [][]int[][] = 1\T1/ptm/m/n/10 , Overfull \hbox (34.97314pt too wide) in paragraph at lines 2932--2932 \T1/ptm/m/it/10 timesteps_between_repetitions: Underfull \hbox (badness 10000) in paragraph at lines 2932--2932 [][]\T1/ptm/m/it/10 int[][] = 365\T1/ptm/m/n/10 , Overfull \hbox (14.53346pt too wide) in paragraph at lines 2932--2932 \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 2932--2932 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Overfull \hbox (21.19351pt too wide) in paragraph at lines 2932--2932 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 2932--2932 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar- Underfull \hbox (badness 7667) in paragraph at lines 2932--2932 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 All\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 broad- Underfull \hbox (badness 10000) in paragraph at lines 2932--2932 \T1/ptm/m/it/10 cast_event: [][]str[][] = Underfull \hbox (badness 10000) in paragraph at lines 2932--2932 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 vac-cine_type: Underfull \hbox (badness 10000) in paragraph at lines 2932--2932 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Ac-qui-si-tion- Underfull \hbox (badness 10000) in paragraph at lines 2932--2932 \T1/ptm/m/it/10 Block-ing\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 vac - Underfull \hbox (badness 10000) in paragraph at lines 2932--2932 \T1/ptm/m/it/10 vac-cine_initial_effect: Underfull \hbox (badness 10000) in paragraph at lines 2932--2932 [][]\T1/ptm/m/it/10 float[][] = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 vac- Underfull \hbox (badness 10000) in paragraph at lines 2932--2932 \T1/ptm/m/it/10 cine_box_duration: Underfull \hbox (badness 10000) in paragraph at lines 2932--2932 [][]\T1/ptm/m/it/10 int[][] = 365\T1/ptm/m/n/10 , \T1/ptm/m/it/10 vac- Overfull \hbox (29.97394pt too wide) in paragraph at lines 2932--2932 \T1/ptm/m/it/10 cine_exponential_decay_rate: Underfull \hbox (badness 10000) in paragraph at lines 2932--2932 [][]\T1/ptm/m/it/10 float[][] = 1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ef-fi- Overfull \hbox (2.56361pt too wide) in paragraph at lines 2932--2932 \T1/ptm/m/it/10 cacy_is_multiplicative: Underfull \hbox (badness 5893) in paragraph at lines 2958--2960 []\T1/pcr/b/n/10 repetitions \T1/ptm/m/n/10 ^^U The num-ber of times an in-ter- ven-tion is given, used with [50] Underfull \hbox (badness 10000) in paragraph at lines 3020--3020 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3020--3020 \T1/ptm/m/it/10 start_day\T1/ptm/m/n/10 , \T1/ptm/m/it/10 file- [51] Underfull \hbox (badness 10000) in paragraph at lines 3055--3055 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3055--3055 \T1/ptm/m/it/10 start_day: [][]int[][] = Underfull \hbox (badness 10000) in paragraph at lines 3055--3055 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 du-ra-tion_days: Underfull \hbox (badness 10000) in paragraph at lines 3055--3055 [][]\T1/ptm/m/it/10 int[][] = 365000\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3055--3055 \T1/ptm/m/it/10 clude_vector_state: Underfull \hbox (badness 10000) in paragraph at lines 3055--3055 [][]\T1/ptm/m/it/10 int[][] = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 strat- Underfull \hbox (badness 10000) in paragraph at lines 3055--3055 \T1/ptm/m/it/10 ify_by: [][]str[][] = Underfull \hbox (badness 10000) in paragraph at lines 3055--3055 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 GENOME\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ ptm/m/it/10 com- Overfull \hbox (9.02399pt too wide) in paragraph at lines 3055--3055 \T1/ptm/m/it/10 bine_similar_genomes: Underfull \hbox (badness 10000) in paragraph at lines 3055--3055 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 spe- Overfull \hbox (102.76315pt too wide) in paragraph at lines 3055--3055 \T1/ptm/m/it/10 cific_genome_combinations_for_stratification: Underfull \hbox (badness 10000) in paragraph at lines 3055--3055 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 al- Overfull \hbox (64.54318pt too wide) in paragraph at lines 3055--3055 \T1/ptm/m/it/10 lele_combinations_for_stratification: Overfull \hbox (2.32376pt too wide) in paragraph at lines 3055--3055 \T1/ptm/m/it/10 les_for_stratification: Underfull \hbox (badness 10000) in paragraph at lines 3055--3055 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- [52] Underfull \hbox (badness 10000) in paragraph at lines 3135--3135 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3154--3154 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 6893) in paragraph at lines 3154--3154 \T1/ptm/m/it/10 = 365000\T1/ptm/m/n/10 , \T1/ptm/m/it/10 nodes: Underfull \hbox (badness 5847) in paragraph at lines 3154--3154 \T1/ptm/m/it/10 ing_interval: [][]float[][] Underfull \hbox (badness 10000) in paragraph at lines 3154--3154 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in-di-vid- Underfull \hbox (badness 10000) in paragraph at lines 3154--3154 \T1/ptm/m/it/10 ual_property_filter: Underfull \hbox (badness 10000) in paragraph at lines 3154--3154 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , \T1/ptm/m/it/ 10 in-fec- Underfull \hbox (badness 10000) in paragraph at lines 3154--3154 \T1/ptm/m/it/10 tious-ness_bins: Underfull \hbox (badness 10000) in paragraph at lines 3154--3154 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Overfull \hbox (4.30418pt too wide) in paragraph at lines 3154--3154 \T1/ptm/m/it/10 max_number_reports: Underfull \hbox (badness 7291) in paragraph at lines 3154--3154 [][]\T1/ptm/m/it/10 int[][] = 100\T1/ptm/m/n/10 , \T1/ptm/m/it/10 par-a- Underfull \hbox (badness 10000) in paragraph at lines 3154--3154 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- [53] Underfull \hbox (badness 10000) in paragraph at lines 3215--3215 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i- Underfull \hbox (badness 10000) in paragraph at lines 3231--3231 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3231--3231 \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3231--3231 \T1/ptm/m/it/10 start_day: Underfull \hbox (badness 10000) in paragraph at lines 3231--3231 \T1/ptm/m/it/10 ra-tion_days: Underfull \hbox (badness 10000) in paragraph at lines 3231--3231 \T1/ptm/m/it/10 nodes: Overfull \hbox (3.20416pt too wide) in paragraph at lines 3231--3231 \T1/ptm/m/it/10 pretty_format: Overfull \hbox (15.2441pt too wide) in paragraph at lines 3231--3231 \T1/ptm/m/it/10 port_description: [54] Underfull \hbox (badness 10000) in paragraph at lines 3271--3271 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3271--3271 \T1/ptm/m/it/10 = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Re-port-Malar- Underfull \hbox (badness 10000) in paragraph at lines 3271--3271 \T1/ptm/m/it/10 i-aFil-tered.json\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3271--3271 \T1/ptm/m/it/10 min_age_years: Underfull \hbox (badness 10000) in paragraph at lines 3271--3271 [][]\T1/ptm/m/it/10 float[][] = 0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3271--3271 \T1/ptm/m/it/10 max_age_years: Underfull \hbox (badness 10000) in paragraph at lines 3271--3271 [][]\T1/ptm/m/it/10 float[][] = 125\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3271--3271 \T1/ptm/m/it/10 has_interventions: Overfull \hbox (74.41385pt too wide) in paragraph at lines 3271--3271 \T1/ptm/m/it/10 clude_30day_avg_infection_duration: [55] Underfull \hbox (badness 10000) in paragraph at lines 3321--3321 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3321--3321 \T1/ptm/m/it/10 man- Underfull \hbox (badness 10000) in paragraph at lines 3321--3321 \T1/ptm/m/it/10 i-fest\T1/ptm/m/n/10 , Overfull \hbox (10.35448pt too wide) in paragraph at lines 3321--3321 \T1/ptm/m/it/10 start_day: Overfull \hbox (6.45485pt too wide) in paragraph at lines 3321--3321 \T1/ptm/m/it/10 end_day: Underfull \hbox (badness 10000) in paragraph at lines 3321--3321 [][]\T1/ptm/m/it/10 int[][] = Overfull \hbox (1.74501pt too wide) in paragraph at lines 3321--3321 \T1/ptm/m/it/10 365000\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3321--3321 \T1/ptm/m/it/10 re-port- Overfull \hbox (21.46431pt too wide) in paragraph at lines 3321--3321 \T1/ptm/m/it/10 ing_interval: Underfull \hbox (badness 10000) in paragraph at lines 3321--3321 \T1/ptm/m/it/10 nodes: Underfull \hbox (badness 10000) in paragraph at lines 3321--3321 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 3321--3321 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3321--3321 \T1/ptm/m/it/10 re- Overfull \hbox (28.1245pt too wide) in paragraph at lines 3321--3321 \T1/ptm/m/it/10 port_filename: Underfull \hbox (badness 10000) in paragraph at lines 3321--3321 [][]\T1/ptm/m/it/10 str[][] = Underfull \hbox (badness 10000) in paragraph at lines 3321--3321 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Spa- Underfull \hbox (badness 10000) in paragraph at lines 3321--3321 \T1/ptm/m/it/10 tial-Re- Underfull \hbox (badness 10000) in paragraph at lines 3321--3321 \T1/ptm/m/it/10 port- Underfull \hbox (badness 10000) in paragraph at lines 3321--3321 \T1/ptm/m/it/10 Malar- Underfull \hbox (badness 10000) in paragraph at lines 3321--3321 \T1/ptm/m/it/10 i-aFil- Underfull \hbox (badness 10000) in paragraph at lines 3321--3321 \T1/ptm/m/it/10 tered\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3321--3321 \T1/ptm/m/it/10 spa- Overfull \hbox (56.87419pt too wide) in paragraph at lines 3321--3321 \T1/ptm/m/it/10 tial_output_channels: Underfull \hbox (badness 10000) in paragraph at lines 3321--3321 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 3349--3357 \T1/ptm/m/n/10 ^^PBlood_Smear_Gametocyte_Prevalence^^Q, ^^PBlood_Smear_Parasite _Prevalence^^Q, Underfull \hbox (badness 10000) in paragraph at lines 3349--3357 \T1/ptm/m/n/10 ^^PCam-paign_Cost^^Q, ^^PDaily_Bites_Per_Human^^Q, ^^PDaily_EIR^ ^Q, ^^PDis-ease_Deaths^^Q, Underfull \hbox (badness 10000) in paragraph at lines 3349--3357 \T1/ptm/m/n/10 ^^PNew_Reported_Infections^^Q, ^^PNew_Severe_Cases^^Q, ^^PPCR_Ga metocyte_Prevalence^^Q, Underfull \hbox (badness 10000) in paragraph at lines 3349--3357 \T1/ptm/m/n/10 ^^PPCR_Parasite_Prevalence^^Q, ^^PPfHRP2_Prevalence^^Q, ^^PPop-u -la-tion^^Q, ^^PPreva- Underfull \hbox (badness 10000) in paragraph at lines 3349--3357 \T1/ptm/m/n/10 lence^^Q, ^^PRain-fall^^Q, ^^PRel-a-tive_Humidity^^Q, ^^PTrue_Pr evalence^^Q De-faults: [56] Underfull \hbox (badness 10000) in paragraph at lines 3370--3370 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3370--3370 \T1/ptm/m/it/10 start_day: [][]int[][] = Underfull \hbox (badness 10000) in paragraph at lines 3370--3370 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 du-ra-tion_days: Underfull \hbox (badness 10000) in paragraph at lines 3370--3370 [][]\T1/ptm/m/it/10 int[][] = 365000\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3370--3370 \T1/ptm/m/it/10 event_trigger_list: Underfull \hbox (badness 6893) in paragraph at lines 3370--3370 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 nodes: Underfull \hbox (badness 10000) in paragraph at lines 3370--3370 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 3370--3370 \T1/ptm/m/it/10 port_description: Underfull \hbox (badness 10000) in paragraph at lines 3391--3391 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 end_day: Underfull \hbox (badness 10000) in paragraph at lines 3391--3391 [][]\T1/ptm/m/it/10 int[][] = 365000\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in- Underfull \hbox (badness 10000) in paragraph at lines 3391--3391 \T1/ptm/m/it/10 clude_infection_table: Underfull \hbox (badness 10000) in paragraph at lines 3391--3391 [][]\T1/ptm/m/it/10 int[][] = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in- [57] Underfull \hbox (badness 10000) in paragraph at lines 3453--3453 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3453--3453 \T1/ptm/m/it/10 ing_interval: Underfull \hbox (badness 10000) in paragraph at lines 3453--3453 [][]\T1/ptm/m/it/10 int[][] = 1\T1/ptm/m/n/10 , Overfull \hbox (10.30418pt too wide) in paragraph at lines 3453--3453 \T1/ptm/m/it/10 max_number_reports: Underfull \hbox (badness 10000) in paragraph at lines 3453--3453 [][]\T1/ptm/m/it/10 int[][] = 365000\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3453--3453 \T1/ptm/m/it/10 nodes: [][]list[][] = Underfull \hbox (badness 10000) in paragraph at lines 3453--3453 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 age_bins: Underfull \hbox (badness 10000) in paragraph at lines 3453--3453 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3453--3453 \T1/ptm/m/it/10 pretty_format: Underfull \hbox (badness 10000) in paragraph at lines 3453--3453 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 3453--3453 \T1/ptm/m/it/10 port_description: Underfull \hbox (badness 10000) in paragraph at lines 3503--3503 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 7168) in paragraph at lines 3503--3503 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 du-ra-tion_days: Underfull \hbox (badness 10000) in paragraph at lines 3503--3503 [][]\T1/ptm/m/it/10 int[][] = 365000\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3503--3503 \T1/ptm/m/it/10 event_trigger_list: Underfull \hbox (badness 10000) in paragraph at lines 3503--3503 \T1/ptm/m/it/10 ing_interval: Underfull \hbox (badness 10000) in paragraph at lines 3503--3503 [][]\T1/ptm/m/it/10 float[][] = 1\T1/ptm/m/n/10 , Overfull \hbox (10.30418pt too wide) in paragraph at lines 3503--3503 \T1/ptm/m/it/10 max_number_reports: Underfull \hbox (badness 10000) in paragraph at lines 3503--3503 [][]\T1/ptm/m/it/10 int[][] = 365000\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3503--3503 \T1/ptm/m/it/10 nodes: [][]list[][] = Underfull \hbox (badness 10000) in paragraph at lines 3503--3503 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in-di-vid- Overfull \hbox (20.78384pt too wide) in paragraph at lines 3503--3503 \T1/ptm/m/it/10 ual_property_to_collect: Underfull \hbox (badness 10000) in paragraph at lines 3503--3503 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3503--3503 \T1/ptm/m/it/10 pretty_format: Underfull \hbox (badness 10000) in paragraph at lines 3503--3503 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 3503--3503 \T1/ptm/m/it/10 port_description: [58] [59] Underfull \hbox (badness 10000) in paragraph at lines 3608--3608 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3608--3608 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in-di-vid- Overfull \hbox (26.78384pt too wide) in paragraph at lines 3608--3608 \T1/ptm/m/it/10 ual_property_to_collect: Underfull \hbox (badness 6526) in paragraph at lines 3608--3608 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , \T1/ptm/m/it/ 10 strat- Underfull \hbox (badness 10000) in paragraph at lines 3608--3608 \T1/ptm/m/it/10 ify_by_gender: Underfull \hbox (badness 10000) in paragraph at lines 3642--3642 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3642--3642 \T1/ptm/m/it/10 man- Underfull \hbox (badness 10000) in paragraph at lines 3642--3642 \T1/ptm/m/it/10 i-fest\T1/ptm/m/n/10 , Overfull \hbox (14.48471pt too wide) in paragraph at lines 3642--3642 \T1/ptm/m/it/10 age_bins: Underfull \hbox (badness 10000) in paragraph at lines 3642--3642 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3642--3642 \T1/ptm/m/it/10 in-di- Underfull \hbox (badness 10000) in paragraph at lines 3642--3642 \T1/ptm/m/it/10 vid- Overfull \hbox (74.78384pt too wide) in paragraph at lines 3642--3642 \T1/ptm/m/it/10 ual_property_to_collect: Underfull \hbox (badness 10000) in paragraph at lines 3642--3642 [][]\T1/ptm/m/it/10 str[][] Underfull \hbox (badness 10000) in paragraph at lines 3642--3642 \T1/ptm/m/it/10 = \TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3642--3642 \T1/ptm/m/it/10 strat- Overfull \hbox (35.68442pt too wide) in paragraph at lines 3642--3642 \T1/ptm/m/it/10 ify_by_gender: [60] Overfull \hbox (47.85474pt too wide) in paragraph at lines 3676--3676 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , Overfull \hbox (49.79494pt too wide) in paragraph at lines 3676--3676 \T1/ptm/m/it/10 man- Overfull \hbox (35.35486pt too wide) in paragraph at lines 3676--3676 \T1/ptm/m/it/10 i- Overfull \hbox (45.63463pt too wide) in paragraph at lines 3676--3676 \T1/ptm/m/it/10 fest\T1/ptm/m/n/10 , Overfull \hbox (46.26491pt too wide) in paragraph at lines 3676--3676 \T1/ptm/m/it/10 bar- Overfull \hbox (55.34474pt too wide) in paragraph at lines 3676--3676 \T1/ptm/m/it/10 codes: Overfull \hbox (41.47458pt too wide) in paragraph at lines 3676--3676 [][]\T1/ptm/m/it/10 list[][] Overfull \hbox (35.99501pt too wide) in paragraph at lines 3676--3676 \T1/ptm/m/it/10 = Overfull \hbox (52.85487pt too wide) in paragraph at lines 3676--3676 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (122.7736pt too wide) in paragraph at lines 3676--3676 \T1/ptm/m/it/10 drug_resistant_strings: Overfull \hbox (41.47458pt too wide) in paragraph at lines 3676--3676 [][]\T1/ptm/m/it/10 list[][] Overfull \hbox (35.99501pt too wide) in paragraph at lines 3676--3676 \T1/ptm/m/it/10 = Overfull \hbox (52.85487pt too wide) in paragraph at lines 3676--3676 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (148.3231pt too wide) in paragraph at lines 3676--3676 \T1/ptm/m/it/10 drug_resistant_statistic_type: Overfull \hbox (39.80469pt too wide) in paragraph at lines 3676--3676 [][]\T1/ptm/m/it/10 str[][] Overfull \hbox (35.99501pt too wide) in paragraph at lines 3676--3676 \T1/ptm/m/it/10 = Overfull \hbox (240.52356pt too wide) in paragraph at lines 3676--3676 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 NUM_PEOPLE_WITH_RESISTANT_INFECTION\TS1/ptm/m /it/10 '\T1/ptm/m/n/10 , Overfull \hbox (68.48471pt too wide) in paragraph at lines 3676--3676 \T1/ptm/m/it/10 age_bins: Overfull \hbox (41.47458pt too wide) in paragraph at lines 3676--3676 [][]\T1/ptm/m/it/10 list[][] Overfull \hbox (35.99501pt too wide) in paragraph at lines 3676--3676 \T1/ptm/m/it/10 = Overfull \hbox (52.85487pt too wide) in paragraph at lines 3676--3676 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (40.35486pt too wide) in paragraph at lines 3676--3676 \T1/ptm/m/it/10 in- Overfull \hbox (40.35486pt too wide) in paragraph at lines 3676--3676 \T1/ptm/m/it/10 di- Overfull \hbox (44.7948pt too wide) in paragraph at lines 3676--3676 \T1/ptm/m/it/10 vid- Overfull \hbox (128.78384pt too wide) in paragraph at lines 3676--3676 \T1/ptm/m/it/10 ual_property_to_collect: Overfull \hbox (39.80469pt too wide) in paragraph at lines 3676--3676 [][]\T1/ptm/m/it/10 str[][] Overfull \hbox (35.99501pt too wide) in paragraph at lines 3676--3676 \T1/ptm/m/it/10 = Overfull \hbox (36.0248pt too wide) in paragraph at lines 3676--3676 \TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , Overfull \hbox (50.76463pt too wide) in paragraph at lines 3676--3676 \T1/ptm/m/it/10 strat- Overfull \hbox (89.68442pt too wide) in paragraph at lines 3676--3676 \T1/ptm/m/it/10 ify_by_gender: Overfull \hbox (39.8048pt too wide) in paragraph at lines 3676--3676 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (35.99501pt too wide) in paragraph at lines 3676--3676 \T1/ptm/m/it/10 = Overfull \hbox (40.24501pt too wide) in paragraph at lines 3676--3676 \T1/ptm/m/it/10 1\T1/pcr/m/n/10 ) [61] Underfull \hbox (badness 10000) in paragraph at lines 3727--3727 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Overfull \hbox (17.85474pt too wide) in paragraph at lines 3756--3756 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , Overfull \hbox (19.79494pt too wide) in paragraph at lines 3756--3756 \T1/ptm/m/it/10 man- Overfull \hbox (5.35486pt too wide) in paragraph at lines 3756--3756 \T1/ptm/m/it/10 i- Overfull \hbox (15.63463pt too wide) in paragraph at lines 3756--3756 \T1/ptm/m/it/10 fest\T1/ptm/m/n/10 , Overfull \hbox (48.68404pt too wide) in paragraph at lines 3756--3756 \T1/ptm/m/it/10 species_list: Overfull \hbox (11.47458pt too wide) in paragraph at lines 3756--3756 [][]\T1/ptm/m/it/10 list[][] Overfull \hbox (5.99501pt too wide) in paragraph at lines 3756--3756 \T1/ptm/m/it/10 = Overfull \hbox (22.85487pt too wide) in paragraph at lines 3756--3756 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (20.76463pt too wide) in paragraph at lines 3756--3756 \T1/ptm/m/it/10 strat- Overfull \hbox (60.89413pt too wide) in paragraph at lines 3756--3756 \T1/ptm/m/it/10 ify_by_species: Overfull \hbox (9.8048pt too wide) in paragraph at lines 3756--3756 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (5.99501pt too wide) in paragraph at lines 3756--3756 \T1/ptm/m/it/10 = Overfull \hbox (6.74501pt too wide) in paragraph at lines 3756--3756 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , Overfull \hbox (10.35486pt too wide) in paragraph at lines 3756--3756 \T1/ptm/m/it/10 in- Overfull \hbox (70.75449pt too wide) in paragraph at lines 3756--3756 \T1/ptm/m/it/10 clude_wolbachia: Overfull \hbox (9.8048pt too wide) in paragraph at lines 3756--3756 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (5.99501pt too wide) in paragraph at lines 3756--3756 \T1/ptm/m/it/10 = Overfull \hbox (6.74501pt too wide) in paragraph at lines 3756--3756 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , Overfull \hbox (10.35486pt too wide) in paragraph at lines 3756--3756 \T1/ptm/m/it/10 in- Overfull \hbox (65.80426pt too wide) in paragraph at lines 3756--3756 \T1/ptm/m/it/10 clude_gestation: Overfull \hbox (9.8048pt too wide) in paragraph at lines 3756--3756 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (5.99501pt too wide) in paragraph at lines 3756--3756 \T1/ptm/m/it/10 = Overfull \hbox (6.74501pt too wide) in paragraph at lines 3756--3756 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , Overfull \hbox (16.26491pt too wide) in paragraph at lines 3756--3756 \T1/ptm/m/it/10 bar- Overfull \hbox (25.34474pt too wide) in paragraph at lines 3756--3756 \T1/ptm/m/it/10 codes: Overfull \hbox (11.47458pt too wide) in paragraph at lines 3756--3756 [][]\T1/ptm/m/it/10 list[][] Overfull \hbox (5.99501pt too wide) in paragraph at lines 3756--3756 \T1/ptm/m/it/10 = Overfull \hbox (26.35487pt too wide) in paragraph at lines 3756--3756 \T1/ptm/m/it/10 None\T1/pcr/m/n/10 ) [62] Underfull \hbox (badness 10000) in paragraph at lines 3796--3796 \T1/ptm/m/it/10 only_include_events_in_list: Underfull \hbox (badness 8189) in paragraph at lines 3796--3796 [][]\T1/ptm/m/it/10 bool[][] = True\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ips_to_reco rd: Underfull \hbox (badness 10000) in paragraph at lines 3796--3796 \T1/ptm/m/it/10 node_ids: [][]list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3796--3796 \T1/ptm/m/it/10 min_age_years: [][]float[][] = 0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3796--3796 \TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , \T1/ptm/m/it/10 must_have_intervention: Underfull \hbox (badness 10000) in paragraph at lines 3796--3796 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , \T1/ptm/m/it/ 10 prop- Underfull \hbox (badness 10000) in paragraph at lines 3796--3796 \T1/ptm/m/it/10 erty_change_ip_to_record: [63] Underfull \hbox (badness 10000) in paragraph at lines 3853--3853 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3853--3853 \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3853--3853 \T1/ptm/m/it/10 start_day: Underfull \hbox (badness 10000) in paragraph at lines 3853--3853 \T1/ptm/m/it/10 ra-tion_days: Underfull \hbox (badness 10000) in paragraph at lines 3853--3853 [][]\T1/ptm/m/it/10 int[][] = Underfull \hbox (badness 10000) in paragraph at lines 3853--3853 \T1/ptm/m/it/10 36500000\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3853--3853 \T1/ptm/m/it/10 re- Overfull \hbox (15.2441pt too wide) in paragraph at lines 3853--3853 \T1/ptm/m/it/10 port_description: Underfull \hbox (badness 10000) in paragraph at lines 3853--3853 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , [64] Underfull \hbox (badness 10000) in paragraph at lines 3888--3888 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pa-ram-e-ters: Underfull \hbox (badness 10000) in paragraph at lines 3888--3888 \T1/ptm/m/it/10 dict = \T1/ptm/m/n/10 , Underfull \hbox (badness 6348) in paragraph at lines 3888--3888 \T1/ptm/m/it/10 En-abled: bool = Underfull \hbox (badness 10000) in paragraph at lines 3936--3936 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pa-ram-e-ters: Underfull \hbox (badness 10000) in paragraph at lines 3936--3936 \T1/ptm/m/it/10 dict = \T1/ptm/m/n/10 , Underfull \hbox (badness 6348) in paragraph at lines 3936--3936 \T1/ptm/m/it/10 En-abled: bool = Underfull \hbox (badness 10000) in paragraph at lines 3960--3960 []\T1/ptm/m/it/10 class_name: Underfull \hbox (badness 10000) in paragraph at lines 3960--3960 \T1/ptm/m/it/10 = \T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3960--3960 \T1/ptm/m/it/10 En-abled: Overfull \hbox (0.5943pt too wide) in paragraph at lines 3960--3960 \T1/ptm/m/it/10 Pretty_Format: [65] Overfull \hbox (55.2345pt too wide) in paragraph at lines 3985--3985 []\T1/ptm/m/it/10 class_name: Overfull \hbox (15.80469pt too wide) in paragraph at lines 3985--3985 \T1/ptm/m/it/10 str Overfull \hbox (11.99501pt too wide) in paragraph at lines 3985--3985 \T1/ptm/m/it/10 = Overfull \hbox (28.85487pt too wide) in paragraph at lines 3985--3985 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (18.57497pt too wide) in paragraph at lines 3985--3985 \T1/ptm/m/it/10 pa- Overfull \hbox (24.53493pt too wide) in paragraph at lines 3985--3985 \T1/ptm/m/it/10 ram- Overfull \hbox (13.01491pt too wide) in paragraph at lines 3985--3985 \T1/ptm/m/it/10 e- Overfull \hbox (23.4746pt too wide) in paragraph at lines 3985--3985 \T1/ptm/m/it/10 ters: Overfull \hbox (20.24474pt too wide) in paragraph at lines 3985--3985 \T1/ptm/m/it/10 dict Overfull \hbox (11.99501pt too wide) in paragraph at lines 3985--3985 \T1/ptm/m/it/10 = Overfull \hbox (27.5448pt too wide) in paragraph at lines 3985--3985 \T1/ptm/m/it/10 \T1/ptm/m/n/10 , Overfull \hbox (19.68495pt too wide) in paragraph at lines 3985--3985 \T1/ptm/m/it/10 En- Overfull \hbox (30.7948pt too wide) in paragraph at lines 3985--3985 \T1/ptm/m/it/10 abled: Overfull \hbox (23.0249pt too wide) in paragraph at lines 3985--3985 \T1/ptm/m/it/10 bool Overfull \hbox (11.99501pt too wide) in paragraph at lines 3985--3985 \T1/ptm/m/it/10 = Overfull \hbox (26.08485pt too wide) in paragraph at lines 3985--3985 \T1/ptm/m/it/10 True\T1/ptm/m/n/10 , Overfull \hbox (66.5943pt too wide) in paragraph at lines 3985--3985 \T1/ptm/m/it/10 Pretty_Format: Overfull \hbox (23.0249pt too wide) in paragraph at lines 3985--3985 \T1/ptm/m/it/10 bool Overfull \hbox (11.99501pt too wide) in paragraph at lines 3985--3985 \T1/ptm/m/it/10 = Overfull \hbox (29.58485pt too wide) in paragraph at lines 3985--3985 \T1/ptm/m/it/10 True\T1/pcr/m/n/10 ) Underfull \hbox (badness 5832) in paragraph at lines 3988--3993 \T1/ptm/m/n/10 The re-port can only be used when the sim-u-la-tion setup pa-ram -e-ter \T1/ptm/b/n/10 Malaria_Model \T1/ptm/m/n/10 is set to Underfull \hbox (badness 10000) in paragraph at lines 4010--4010 []\T1/ptm/m/it/10 class_name: str Underfull \hbox (badness 7291) in paragraph at lines 4010--4010 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pa-ram- Underfull \hbox (badness 10000) in paragraph at lines 4010--4010 \T1/ptm/m/it/10 e-ters: dict = Underfull \hbox (badness 10000) in paragraph at lines 4010--4010 \T1/ptm/m/it/10 \T1/ptm/m/n/10 , \T1/ptm/m/it/10 En- Underfull \hbox (badness 10000) in paragraph at lines 4010--4010 \T1/ptm/m/it/10 Pretty_Format: [66] Overfull \hbox (13.2345pt too wide) in paragraph at lines 4034--4034 []\T1/ptm/m/it/10 class_name: Underfull \hbox (badness 10000) in paragraph at lines 4034--4034 \T1/ptm/m/it/10 str = Underfull \hbox (badness 10000) in paragraph at lines 4034--4034 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4034--4034 \T1/ptm/m/it/10 pa-ram-e- Underfull \hbox (badness 10000) in paragraph at lines 4034--4034 \T1/ptm/m/it/10 tory>\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4034--4034 \T1/ptm/m/it/10 En-abled: Underfull \hbox (badness 10000) in paragraph at lines 4034--4034 \T1/ptm/m/it/10 bool Underfull \hbox (badness 10000) in paragraph at lines 4034--4034 \T1/ptm/m/it/10 = True\T1/ptm/m/n/10 , Overfull \hbox (24.5943pt too wide) in paragraph at lines 4034--4034 \T1/ptm/m/it/10 Pretty_Format: Underfull \hbox (badness 10000) in paragraph at lines 4034--4034 \T1/ptm/m/it/10 bool = Underfull \hbox (badness 10000) in paragraph at lines 4059--4059 []\T1/ptm/m/it/10 class_name: str = Underfull \hbox (badness 10000) in paragraph at lines 4059--4059 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pa-ram-e-ters: [67] Underfull \hbox (badness 6236) in paragraph at lines 4107--4107 []\T1/ptm/m/it/10 class_name: str = Underfull \hbox (badness 10000) in paragraph at lines 4107--4107 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pa-ram-e-ters: Underfull \hbox (badness 10000) in paragraph at lines 4107--4107 \T1/ptm/m/it/10 dict = \T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4131--4131 []\T1/ptm/m/it/10 class_name: str Underfull \hbox (badness 7291) in paragraph at lines 4131--4131 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pa-ram- Underfull \hbox (badness 10000) in paragraph at lines 4131--4131 \T1/ptm/m/it/10 e-ters: dict = Underfull \hbox (badness 10000) in paragraph at lines 4131--4131 \T1/ptm/m/it/10 \T1/ptm/m/n/10 , \T1/ptm/m/it/10 En- Underfull \hbox (badness 10000) in paragraph at lines 4131--4131 \T1/ptm/m/it/10 Pretty_Format: Underfull \hbox (badness 10000) in paragraph at lines 4160--4160 []\T1/ptm/m/it/10 class_name: Underfull \hbox (badness 10000) in paragraph at lines 4160--4160 \T1/ptm/m/it/10 pa-ram-e- Underfull \hbox (badness 10000) in paragraph at lines 4160--4160 \T1/ptm/m/it/10 \T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4160--4160 \T1/ptm/m/it/10 En-abled: Overfull \hbox (6.5943pt too wide) in paragraph at lines 4160--4160 \T1/ptm/m/it/10 Pretty_Format: [68] Overfull \hbox (13.2345pt too wide) in paragraph at lines 4204--4204 []\T1/ptm/m/it/10 class_name: Underfull \hbox (badness 10000) in paragraph at lines 4204--4204 \T1/ptm/m/it/10 str = Underfull \hbox (badness 10000) in paragraph at lines 4204--4204 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4204--4204 \T1/ptm/m/it/10 pa-ram-e- Underfull \hbox (badness 10000) in paragraph at lines 4204--4204 \T1/ptm/m/it/10 tory>\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4204--4204 \T1/ptm/m/it/10 En-abled: Underfull \hbox (badness 10000) in paragraph at lines 4204--4204 \T1/ptm/m/it/10 bool Underfull \hbox (badness 10000) in paragraph at lines 4204--4204 \T1/ptm/m/it/10 = True\T1/ptm/m/n/10 , Overfull \hbox (24.5943pt too wide) in paragraph at lines 4204--4204 \T1/ptm/m/it/10 Pretty_Format: Underfull \hbox (badness 10000) in paragraph at lines 4204--4204 \T1/ptm/m/it/10 bool = Underfull \hbox (badness 10000) in paragraph at lines 4228--4228 []\T1/ptm/m/it/10 class_name: Underfull \hbox (badness 10000) in paragraph at lines 4228--4228 \T1/ptm/m/it/10 str = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4228--4228 \T1/ptm/m/it/10 pa-ram-e-ters: Underfull \hbox (badness 10000) in paragraph at lines 4228--4228 \T1/ptm/m/it/10 dict = \T1/ptm/m/n/10 , \T1/ptm/m/it/10 En-abled: Underfull \hbox (badness 10000) in paragraph at lines 4228--4228 \T1/ptm/m/it/10 bool = True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4228--4228 \T1/ptm/m/it/10 Pretty_Format: Overfull \hbox (19.2345pt too wide) in paragraph at lines 4251--4251 []\T1/ptm/m/it/10 class_name: Underfull \hbox (badness 10000) in paragraph at lines 4251--4251 \T1/ptm/m/it/10 str = Underfull \hbox (badness 10000) in paragraph at lines 4251--4251 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4251--4251 \T1/ptm/m/it/10 pa-ram- Underfull \hbox (badness 10000) in paragraph at lines 4251--4251 \T1/ptm/m/it/10 e-ters: Underfull \hbox (badness 8151) in paragraph at lines 4251--4251 \T1/ptm/m/it/10 dict = Underfull \hbox (badness 10000) in paragraph at lines 4251--4251 \T1/ptm/m/it/10 \T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4251--4251 \T1/ptm/m/it/10 En- Underfull \hbox (badness 10000) in paragraph at lines 4251--4251 \T1/ptm/m/it/10 abled: Underfull \hbox (badness 10000) in paragraph at lines 4251--4251 \T1/ptm/m/it/10 True\T1/ptm/m/n/10 , Overfull \hbox (30.5943pt too wide) in paragraph at lines 4251--4251 \T1/ptm/m/it/10 Pretty_Format: [69] Overfull \hbox (67.2345pt too wide) in paragraph at lines 4279--4279 []\T1/ptm/m/it/10 class_name: Overfull \hbox (27.80469pt too wide) in paragraph at lines 4279--4279 \T1/ptm/m/it/10 str Overfull \hbox (23.99501pt too wide) in paragraph at lines 4279--4279 \T1/ptm/m/it/10 = Overfull \hbox (40.85487pt too wide) in paragraph at lines 4279--4279 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (30.57497pt too wide) in paragraph at lines 4279--4279 \T1/ptm/m/it/10 pa- Overfull \hbox (36.53493pt too wide) in paragraph at lines 4279--4279 \T1/ptm/m/it/10 ram- Overfull \hbox (25.01491pt too wide) in paragraph at lines 4279--4279 \T1/ptm/m/it/10 e- Overfull \hbox (35.4746pt too wide) in paragraph at lines 4279--4279 \T1/ptm/m/it/10 ters: Overfull \hbox (32.24474pt too wide) in paragraph at lines 4279--4279 \T1/ptm/m/it/10 dict Overfull \hbox (23.99501pt too wide) in paragraph at lines 4279--4279 \T1/ptm/m/it/10 = Overfull \hbox (39.5448pt too wide) in paragraph at lines 4279--4279 \T1/ptm/m/it/10 \T1/ptm/m/n/10 , Overfull \hbox (31.68495pt too wide) in paragraph at lines 4279--4279 \T1/ptm/m/it/10 En- Overfull \hbox (42.7948pt too wide) in paragraph at lines 4279--4279 \T1/ptm/m/it/10 abled: Overfull \hbox (35.0249pt too wide) in paragraph at lines 4279--4279 \T1/ptm/m/it/10 bool Overfull \hbox (23.99501pt too wide) in paragraph at lines 4279--4279 \T1/ptm/m/it/10 = Overfull \hbox (38.08485pt too wide) in paragraph at lines 4279--4279 \T1/ptm/m/it/10 True\T1/ptm/m/n/10 , Overfull \hbox (78.5943pt too wide) in paragraph at lines 4279--4279 \T1/ptm/m/it/10 Pretty_Format: Overfull \hbox (35.0249pt too wide) in paragraph at lines 4279--4279 \T1/ptm/m/it/10 bool Overfull \hbox (23.99501pt too wide) in paragraph at lines 4279--4279 \T1/ptm/m/it/10 = Overfull \hbox (41.58485pt too wide) in paragraph at lines 4279--4279 \T1/ptm/m/it/10 True\T1/pcr/m/n/10 ) [70] Underfull \hbox (badness 10000) in paragraph at lines 4307--4307 []\T1/ptm/m/it/10 class_name: str Underfull \hbox (badness 7291) in paragraph at lines 4307--4307 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pa-ram- Underfull \hbox (badness 10000) in paragraph at lines 4307--4307 \T1/ptm/m/it/10 e-ters: dict = Underfull \hbox (badness 10000) in paragraph at lines 4307--4307 \T1/ptm/m/it/10 \T1/ptm/m/n/10 , \T1/ptm/m/it/10 En- Underfull \hbox (badness 10000) in paragraph at lines 4307--4307 \T1/ptm/m/it/10 Pretty_Format: Overfull \hbox (37.2345pt too wide) in paragraph at lines 4331--4331 []\T1/ptm/m/it/10 class_name: Underfull \hbox (badness 10000) in paragraph at lines 4331--4331 \T1/ptm/m/it/10 str Underfull \hbox (badness 10000) in paragraph at lines 4331--4331 \T1/ptm/m/it/10 = Overfull \hbox (10.85487pt too wide) in paragraph at lines 4331--4331 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (0.57497pt too wide) in paragraph at lines 4331--4331 \T1/ptm/m/it/10 pa- Overfull \hbox (6.53493pt too wide) in paragraph at lines 4331--4331 \T1/ptm/m/it/10 ram- Underfull \hbox (badness 10000) in paragraph at lines 4331--4331 \T1/ptm/m/it/10 e- Overfull \hbox (5.4746pt too wide) in paragraph at lines 4331--4331 \T1/ptm/m/it/10 ters: Overfull \hbox (2.24474pt too wide) in paragraph at lines 4331--4331 \T1/ptm/m/it/10 dict Underfull \hbox (badness 10000) in paragraph at lines 4331--4331 \T1/ptm/m/it/10 = Overfull \hbox (9.5448pt too wide) in paragraph at lines 4331--4331 \T1/ptm/m/it/10 \T1/ptm/m/n/10 , Overfull \hbox (1.68495pt too wide) in paragraph at lines 4331--4331 \T1/ptm/m/it/10 En- Overfull \hbox (12.7948pt too wide) in paragraph at lines 4331--4331 \T1/ptm/m/it/10 abled: Overfull \hbox (5.0249pt too wide) in paragraph at lines 4331--4331 \T1/ptm/m/it/10 bool Underfull \hbox (badness 10000) in paragraph at lines 4331--4331 \T1/ptm/m/it/10 = Overfull \hbox (8.08485pt too wide) in paragraph at lines 4331--4331 \T1/ptm/m/it/10 True\T1/ptm/m/n/10 , Overfull \hbox (48.5943pt too wide) in paragraph at lines 4331--4331 \T1/ptm/m/it/10 Pretty_Format: Overfull \hbox (5.0249pt too wide) in paragraph at lines 4331--4331 \T1/ptm/m/it/10 bool Underfull \hbox (badness 10000) in paragraph at lines 4331--4331 \T1/ptm/m/it/10 = Overfull \hbox (11.58485pt too wide) in paragraph at lines 4331--4331 \T1/ptm/m/it/10 True\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 4356--4356 []\T1/ptm/m/it/10 class_name: Underfull \hbox (badness 10000) in paragraph at lines 4356--4356 \T1/ptm/m/it/10 = \T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4356--4356 \T1/ptm/m/it/10 En-abled: Overfull \hbox (0.5943pt too wide) in paragraph at lines 4356--4356 \T1/ptm/m/it/10 Pretty_Format: [71] Underfull \hbox (badness 10000) in paragraph at lines 4413--4413 []\T1/ptm/m/it/10 config\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/ 10 , Overfull \hbox (24.52415pt too wide) in paragraph at lines 4413--4413 \T1/ptm/m/it/10 var_gene_randomness_type: Underfull \hbox (badness 10000) in paragraph at lines 4413--4413 [][]\T1/ptm/m/it/10 str[][] = Underfull \hbox (badness 10000) in paragraph at lines 4414--4416 \T1/ptm/m/n/10 Sets up the de-fault pa-ram-e-ters for par-a-site ge-net-ics sim -u-la-tions Malaria_Model = [72] [73] Underfull \hbox (badness 10000) in paragraph at lines 4554--4554 []\T1/ptm/m/it/10 config\T1/ptm/m/n/10 , \T1/ptm/m/it/10 species_name: Underfull \hbox (badness 10000) in paragraph at lines 4554--4554 [][]\T1/ptm/m/it/10 str[][]\T1/ptm/m/n/10 , \T1/ptm/m/it/10 habi-tat_type: [][] str[][]\T1/ptm/m/n/10 , Underfull \hbox (badness 7631) in paragraph at lines 4555--4558 \T1/ptm/m/n/10 Set the Max_Larval_Capacity for a given species and habi-tat. Ef -fec-tively do-ing some-thing [74] [75] [76] Underfull \hbox (badness 10000) in paragraph at lines 4892--4892 []\T1/ptm/m/it/10 config\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/ 10 , \T1/ptm/m/it/10 in-sec- Underfull \hbox (badness 6675) in paragraph at lines 4892--4892 \T1/ptm/m/it/10 ti-cide_name: [][]str[][] = \TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , Underfull \hbox (badness 5939) in paragraph at lines 4892--4892 \T1/ptm/m/it/10 species: [][]str[][] = \TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , \T1/ ptm/m/it/10 al- Underfull \hbox (badness 6047) in paragraph at lines 4892--4892 \T1/ptm/m/it/10 block-ing: [][]float[][] = 1.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4892--4892 \T1/ptm/m/it/10 pelling: [][]float[][] = 1.0\T1/ptm/m/n/10 , [77] Underfull \hbox (badness 10000) in paragraph at lines 4962--4962 \T1/ptm/m/it/10 driver_type: [][]str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 CL AS-SIC\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4962--4962 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 shred-ding_allele_required : Underfull \hbox (badness 10000) in paragraph at lines 4962--4962 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 al-lele_shredding_fraction : Underfull \hbox (badness 10000) in paragraph at lines 4962--4962 [][]\T1/ptm/m/it/10 float[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 al- Underfull \hbox (badness 10000) in paragraph at lines 4962--4962 \T1/ptm/m/it/10 lele_to_shred_to_surviving_fraction: [78] [79] Underfull \hbox (badness 10000) in paragraph at lines 5095--5095 []\T1/ptm/m/it/10 config\T1/ptm/m/n/10 , \T1/ptm/m/it/10 species_name\T1/ptm/m/ n/10 , Underfull \hbox (badness 10000) in paragraph at lines 5095--5095 \T1/ptm/m/it/10 habi-tat_type\T1/ptm/m/n/10 , Underfull \hbox (badness 7631) in paragraph at lines 5096--5099 \T1/ptm/m/n/10 Set the Max_Larval_Capacity for a given species and habi-tat. Ef -fec-tively do-ing some-thing [80] Chapter 3. [81] [82] [83] Overfull \hbox (18.03041pt too wide) in paragraph at lines 5301--5302 \T1/ptm/m/n/10 You need to spec-ify `^^Uindex-url = [][]$https : /$[][]/@idmod.org:@packages.idmod.org/api/pypi/pypi- [84] [85] [86] [87] [88] [89] [90] Overfull \hbox (54.6225pt too wide) in paragraph at lines 5604--5605 []\T1/pcr/m/n/10 emodpy_malaria.demographics.MalariaDemographics\T1/ptm/m/n/10 , Overfull \hbox (84.6225pt too wide) in paragraph at lines 5608--5609 []\T1/pcr/m/n/10 emodpy_malaria.interventions.community_health_worker\T1/ptm/m/ n/10 , Overfull \hbox (12.6225pt too wide) in paragraph at lines 5609--5610 []\T1/pcr/m/n/10 emodpy_malaria.interventions.diag_survey\T1/ptm/m/n/10 , Overfull \hbox (24.6225pt too wide) in paragraph at lines 5611--5612 []\T1/pcr/m/n/10 emodpy_malaria.interventions.drug_campaign\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 5612--5613 []\T1/pcr/m/n/10 emodpy_malaria.interventions.inputeir\T1/ptm/m/n/10 , Overfull \hbox (6.6225pt too 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add_drug_status_report() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 20--22 []\T1/pcr/m/n/10 add_event_recorder() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 22--24 []\T1/pcr/m/n/10 add_fMDA() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (4.27083pt too wide) in paragraph at lines 22--24 \T1/ptm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 24--26 []\T1/pcr/m/n/10 add_genes_and_alleles() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod -ule Overfull \hbox (27.60999pt too wide) in paragraph at lines 26--28 \T1/ptm/m/it/10 emodpy_malaria.interventions.scale_larval_habitats\T1/ptm/m/n/1 0 ), Underfull \hbox (badness 10000) in paragraph at lines 30--32 []\T1/pcr/m/n/10 add_initial_vector_species() Overfull \hbox (127.95007pt too wide) in paragraph at lines 30--32 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.demographics.MalariaDemographics .MalariaDemographics Underfull \hbox (badness 10000) in paragraph at lines 32--34 []\T1/pcr/m/n/10 add_initial_vector_species_from_csv() Overfull \hbox (127.95007pt too wide) in paragraph at lines 32--34 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.demographics.MalariaDemographics .MalariaDemographics Underfull \hbox (badness 10000) in paragraph at lines 34--36 []\T1/pcr/m/n/10 add_InputEIR() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 34--36 \T1/ptm/m/it/10 emodpy_malaria.interventions.inputeir\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 36--38 []\T1/pcr/m/n/10 add_insecticide_resistance() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 i n mod-ule Underfull \hbox (badness 10000) in paragraph at lines 38--40 []\T1/pcr/m/n/10 add_insecticide_resistance() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 i n mod-ule Underfull \hbox (badness 10000) in paragraph at lines 42--44 []\T1/pcr/m/n/10 add_ITN() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 44--46 []\T1/pcr/m/n/10 add_ITN_scheduled() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 46--48 []\T1/pcr/m/n/10 add_ITN_triggered() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 48--50 []\T1/pcr/m/n/10 add_larval_habitat_multiplier() Overfull \hbox (127.95007pt too wide) in paragraph at lines 48--50 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.demographics.MalariaDemographics .MalariaDemographics Underfull \hbox (badness 10000) in paragraph at lines 50--52 []\T1/pcr/m/n/10 add_larvicide() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 50--52 \T1/ptm/m/it/10 emodpy_malaria.interventions.larvicide\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 54--56 []\T1/pcr/m/n/10 add_malaria_patient_json_report() \T1/ptm/m/n/10 (\T1/ptm/m/it /10 in Underfull \hbox (badness 10000) in paragraph at lines 56--58 []\T1/pcr/m/n/10 add_malaria_sql_report() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 58--60 []\T1/pcr/m/n/10 add_malaria_summary_report() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 i n mod-ule Underfull \hbox (badness 10000) in paragraph at lines 62--64 []\T1/pcr/m/n/10 add_malaria_transmission_report() \T1/ptm/m/n/10 (\T1/ptm/m/it /10 in Underfull \hbox (badness 10000) in paragraph at lines 64--66 []\T1/pcr/m/n/10 add_MDA() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (4.27083pt too wide) in paragraph at lines 64--66 \T1/ptm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 66--68 []\T1/pcr/m/n/10 add_MSAT() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (4.27083pt too wide) in paragraph at lines 66--68 \T1/ptm/m/it/10 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add_report_event_counter() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 80--82 []\T1/pcr/m/n/10 add_report_intervention_pop_avg() \T1/ptm/m/n/10 (\T1/ptm/m/it /10 in Underfull \hbox (badness 10000) in paragraph at lines 86--88 []\T1/pcr/m/n/10 add_report_node_demographics_malaria() Overfull \hbox (52.1225pt too wide) in paragraph at lines 88--90 []\T1/pcr/m/n/10 add_report_node_demographics_malaria_genetics() Underfull \hbox (badness 10000) in paragraph at lines 90--92 []\T1/pcr/m/n/10 add_report_vector_genetics() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 i n mod-ule Underfull \hbox (badness 10000) in paragraph at lines 94--96 []\T1/pcr/m/n/10 add_report_vector_stats() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in m od-ule Overfull \hbox (22.1225pt too wide) in paragraph at lines 96--98 []\T1/pcr/m/n/10 add_report_vector_stats_malaria_genetics() Underfull \hbox (badness 10000) in paragraph at lines 98--100 []\T1/pcr/m/n/10 add_rfMDA() \T1/ptm/m/n/10 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emodpy_malaria.interventions.vaccine\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 106--108 []\T1/pcr/m/n/10 add_spatial_report_malaria_filtered() Underfull \hbox (badness 10000) in paragraph at lines 108--110 []\T1/pcr/m/n/10 add_species() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 110--112 []\T1/pcr/m/n/10 add_species() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 112--114 []\T1/pcr/m/n/10 add_species_drivers() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 114--115 []\T1/pcr/m/n/10 add_trait() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 115--117 []\T1/pcr/m/n/10 add_treatment_seeking() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod -ule Overfull \hbox (13.89015pt too wide) in paragraph at lines 115--117 \T1/ptm/m/it/10 emodpy_malaria.interventions.treatment_seeking\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 117--119 []\T1/pcr/m/n/10 add_vector_habitat_report() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 119--121 []\T1/pcr/m/n/10 AntimalarialDrug() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 119--121 \T1/ptm/m/it/10 emodpy_malaria.interventions.common\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 121--123 []\T1/pcr/m/n/10 AntimalarialDrug() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 126--128 []\T1/pcr/m/n/10 BasicBednet() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 128--129 []\T1/pcr/m/n/10 Bednet() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 129--131 []\T1/pcr/m/n/10 BednetIntervention() 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paragraph at lines 144--146 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.ReportDrugStatus Overfull \hbox (44.06006pt too wide) in paragraph at lines 146--148 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.ReportEventCounter Overfull \hbox (93.57004pt too wide) in paragraph at lines 148--150 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.ReportHumanMigrationTracking Overfull \hbox (67.70004pt too wide) in paragraph at lines 150--152 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.ReportInterventionPopAvg Overfull \hbox (52.68974pt too wide) in paragraph at lines 152--154 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.ReportMalariaFiltered Overfull \hbox (68.25012pt too wide) in paragraph at lines 154--156 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 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\T1/ptm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/ptm/m/n/10 ), Overfull \hbox (52.1225pt too wide) in paragraph at lines 186--187 []\T1/pcr/m/n/10 emodpy_malaria.demographics.MalariaDemographics Overfull \hbox (82.1225pt too wide) in paragraph at lines 194--195 []\T1/pcr/m/n/10 emodpy_malaria.interventions.community_health_worker Overfull \hbox (10.1225pt too wide) in paragraph at lines 196--197 []\T1/pcr/m/n/10 emodpy_malaria.interventions.diag_survey Overfull \hbox (22.1225pt too wide) in paragraph at lines 200--201 []\T1/pcr/m/n/10 emodpy_malaria.interventions.drug_campaign Overfull \hbox (4.1225pt too wide) in paragraph at lines 206--207 []\T1/pcr/m/n/10 emodpy_malaria.interventions.ivermectin Overfull \hbox (34.1225pt too wide) in paragraph at lines 210--211 []\T1/pcr/m/n/10 emodpy_malaria.interventions.mosquitorelease Overfull \hbox (34.1225pt too wide) in paragraph at lines 214--215 []\T1/pcr/m/n/10 emodpy_malaria.interventions.outdoorrestkill Overfull \hbox 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\T1/ptm/m/it/10 emodpy_malaria.demographics.MalariaDemographics\T1/ptm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 245--247 []\T1/pcr/m/n/10 from_params() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (36.54083pt too wide) in paragraph at lines 245--247 \T1/ptm/m/it/10 emodpy_malaria.demographics.MalariaDemographics\T1/ptm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 247--249 []\T1/pcr/m/n/10 from_pop_csv() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (36.54083pt too wide) in paragraph at lines 247--249 \T1/ptm/m/it/10 emodpy_malaria.demographics.MalariaDemographics\T1/ptm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 249--251 []\T1/pcr/m/n/10 from_template_node() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ul e Overfull \hbox (36.54083pt too wide) in paragraph at lines 249--251 \T1/ptm/m/it/10 emodpy_malaria.demographics.MalariaDemographics\T1/ptm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at 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\T1/ptm/m/it/10 emodpy_malaria.interventions.ivermectin\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 272--274 []\T1/pcr/m/n/10 MalariaDemographics \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Overfull \hbox (36.54083pt too wide) in paragraph at lines 272--274 \T1/ptm/m/it/10 emodpy_malaria.demographics.MalariaDemographics\T1/ptm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 274--276 []\T1/pcr/m/n/10 MalariaDiagnostic() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 274--276 \T1/ptm/m/it/10 emodpy_malaria.interventions.common\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 276--278 []\T1/pcr/m/n/10 MalariaImmunityReport \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in [95] Underfull \hbox (badness 10000) in paragraph at lines 278--280 []\T1/pcr/m/n/10 MalariaPatientJSONReport \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 280--282 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paragraph at lines 324--326 []\T1/pcr/m/n/10 new_intervention_as_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 326--328 []\T1/pcr/m/n/10 new_intervention_as_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 328--330 []\T1/pcr/m/n/10 new_intervention_as_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 330--332 []\T1/pcr/m/n/10 new_intervention_as_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 332--334 []\T1/pcr/m/n/10 new_intervention_as_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (6.12027pt too wide) in paragraph at lines 332--334 \T1/ptm/m/it/10 emodpy_malaria.interventions.mosquitorelease\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 334--336 []\T1/pcr/m/n/10 new_intervention_as_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 334--336 \T1/ptm/m/it/10 emodpy_malaria.interventions.spacespraying\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 336--338 []\T1/pcr/m/n/10 new_intervention_as_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 338--340 []\T1/pcr/m/n/10 new_intervention_as_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 340--342 []\T1/pcr/m/n/10 new_intervention_as_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (71.0599pt too wide) in paragraph at lines 345--347 []\T1/pcr/m/n/10 parameters \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.repo rters.builtin.MalariaImmunityReport Overfull \hbox (84.70978pt too wide) in paragraph at lines 347--349 []\T1/pcr/m/n/10 parameters \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.repo rters.builtin.MalariaPatientJSONReport Overfull \hbox (46.07018pt too 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ing_itn_event_name: [][]str[][] Underfull \hbox (badness 10000) in paragraph at lines 691--695 \T1/ptm/m/n/10 ex-am-ple, \T1/pcr/m/n/10 [{"coverage":1,"min": 1, "max": 10}, { "coverage":1, Underfull \hbox (badness 10000) in paragraph at lines 691--695 \T1/pcr/m/n/10 "min": 11, "max": 50},{ "coverage":0.5, "birth":"birth", [10] Underfull \hbox (badness 10000) in paragraph at lines 748--748 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day: [][]int[][] = Underfull \hbox (badness 10000) in paragraph at lines 748--748 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 event_name: [][]str[][] = Underfull \hbox (badness 10000) in paragraph at lines 748--748 \TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age_by_ages: Underfull \hbox (badness 10000) in paragraph at lines 748--748 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 itn_bednet: Overfull \hbox (60.91318pt too wide) in paragraph at lines 748--748 [][]\T1/ptm/m/n/10 emodpy_malaria.interventions.bednet.Bednet[][] Underfull \hbox (badness 10000) in paragraph at lines 748--748 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 748--748 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 trig- Underfull \hbox (badness 10000) in paragraph at lines 748--748 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lis-ten- Underfull \hbox (badness 10000) in paragraph at lines 748--748 \T1/ptm/m/it/10 check_eligibility_at_trigger: Underfull \hbox (badness 10000) in paragraph at lines 754--754 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start: [][]int[][] = 0\T 1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er- Underfull \hbox (badness 10000) in paragraph at lines 754--754 [][]\T1/ptm/m/it/10 emod_api.schema_to_class.ReadOnlyDict[][] Underfull \hbox (badness 7308) in paragraph at lines 754--754 [][]\T1/ptm/m/it/10 str[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 node_propert y_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 754--754 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ind_propert y_restrictions: Underfull \hbox (badness 6477) in paragraph at lines 754--754 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 trig-gered_ campaign_delay: Underfull \hbox (badness 10000) in paragraph at lines 767--771 \T1/ptm/m/n/10 ex-am-ple, \T1/pcr/m/n/10 [{"coverage":1,"min": 1, "max": 10}, { "coverage":1, Underfull \hbox (badness 10000) in paragraph at lines 767--771 \T1/pcr/m/n/10 "min": 11, "max": 50},{ "coverage":0.5, "birth":"birth", [11] Underfull \hbox (badness 10000) in paragraph at lines 829--839 \T1/ptm/m/n/10 camp = DTK-Con-fig-Builder.from_defaults(sim_example) cov-er-age _by_ages = [{^^Pcov-er-age^^Q: 1, Underfull \hbox (badness 10000) in paragraph at lines 829--839 \T1/ptm/m/n/10 ^^Pmin^^Q: 1, ^^Pmax^^Q: 10}, {^^Pcov-er-age^^Q: 0.75, ^^Pmin^^Q : 11, ^^Pmax^^Q: 60}] add_ITN(camp, Underfull \hbox (badness 10000) in paragraph at lines 829--839 \T1/ptm/m/n/10 start=1, cov-er-age_by_ages, nodeIDs=[2, 5, 7, 21], node_propert y_restrictions=[{^^PPlace^^Q: ^^PUr- Underfull \hbox (badness 10000) in paragraph at lines 829--839 \T1/ptm/m/n/10 ban^^Q}], ind_property_restrictions=[{^^PBiting_Risk^^Q: ^^PHigh ^^Q], trig-gered_campaign_delay=14, trig- [12] Underfull \hbox (badness 10000) in paragraph at lines 850--850 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Di-ag-nos- Overfull \hbox (50.004pt too wide) in paragraph at lines 850--850 \T1/ptm/m/it/10 tic_Type=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 BLOOD_SMEAR_PARASITE S\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 850--850 \T1/ptm/m/it/10 Mea-sure-ment_Sensitivity=0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 914--914 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 914--914 \T1/ptm/m/it/10 start_day\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 914--914 \T1/ptm/m/it/10 trig-ger\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 914--914 \T1/ptm/m/it/10 de-lay\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 914--914 \T1/ptm/m/it/10 in-ter- Underfull \hbox (badness 10000) in paragraph at lines 914--914 \T1/ptm/m/it/10 ven-tion\T1/ptm/m/n/10 , Overfull \hbox (36.58427pt too wide) in paragraph at lines 914--914 \T1/ptm/m/it/10 ip_targeting=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 914--914 \T1/ptm/m/it/10 cov-er- Underfull \hbox (badness 10000) in paragraph at lines 914--914 \T1/ptm/m/it/10 age=1.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 914--914 \T1/ptm/m/it/10 tar- Overfull \hbox (22.85468pt too wide) in paragraph at lines 914--914 \T1/ptm/m/it/10 get_age_min=0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 914--914 \T1/ptm/m/it/10 tar- Overfull \hbox (45.51472pt too wide) in paragraph at lines 914--914 \T1/ptm/m/it/10 get_age_max=125.0\T1/pcr/m/n/10 ) [13] Overfull \hbox (83.18481pt too wide) in paragraph at lines 961--961 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , Overfull \hbox (82.35448pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 start_day: Overfull \hbox (51.8048pt too wide) in paragraph at lines 961--961 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (47.99501pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 = Overfull \hbox (48.74501pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 1\T1/ptm/m/n/10 , Overfull \hbox (59.02464pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 trig- Overfull \hbox (117.814pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 ger_condition_list: Overfull \hbox (53.47458pt too wide) in paragraph at lines 961--961 [][]\T1/ptm/m/it/10 list[][] Overfull \hbox (47.99501pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 = Overfull \hbox (64.85487pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (54.01491pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 de- Overfull \hbox (56.79494pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 mo- Overfull \hbox (116.73457pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 graphic_coverage: Overfull \hbox (59.0249pt too wide) in paragraph at lines 961--961 [][]\T1/ptm/m/it/10 float[][] Overfull \hbox (47.99501pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 = Overfull \hbox (56.24501pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 1.0\T1/ptm/m/n/10 , Overfull \hbox (80.6847pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 node_ids: Overfull \hbox (53.47458pt too wide) in paragraph at lines 961--961 [][]\T1/ptm/m/it/10 list[][] Overfull \hbox (47.99501pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 = Overfull \hbox (64.85487pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (146.53346pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 ind_property_restrictions: Overfull \hbox (53.47458pt too wide) in paragraph at lines 961--961 [][]\T1/ptm/m/it/10 list[][] Overfull \hbox (47.99501pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 = Overfull \hbox (64.85487pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (153.19351pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 node_property_restrictions: Overfull \hbox (53.47458pt too wide) in paragraph at lines 961--961 [][]\T1/ptm/m/it/10 list[][] Overfull \hbox (47.99501pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 = Overfull \hbox (64.85487pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (56.0448pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 tar- Overfull \hbox (95.93463pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 get_age_min: Overfull \hbox (51.8048pt too wide) in paragraph at lines 961--961 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (47.99501pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 = Overfull \hbox (48.74501pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , Overfull \hbox (56.0448pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 tar- Overfull \hbox (97.59468pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 get_age_max: Overfull \hbox (51.8048pt too wide) in paragraph at lines 961--961 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (47.99501pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 = Overfull \hbox (58.74501pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 125\T1/ptm/m/n/10 , Overfull \hbox (56.0448pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 tar- Overfull \hbox (89.3646pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 get_gender: Overfull \hbox (51.80469pt too wide) in paragraph at lines 961--961 [][]\T1/ptm/m/it/10 str[][] Overfull \hbox (47.99501pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 = Overfull \hbox (59.69456pt too wide) in paragraph at lines 961--961 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 All\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (55.13475pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 ini- Overfull \hbox (92.9145pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 tial_amount: Overfull \hbox (51.8048pt too wide) in paragraph at lines 961--961 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (47.99501pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 = Overfull \hbox (48.74501pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 6\T1/ptm/m/n/10 , Overfull \hbox (128.46431pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 amount_in_shipment: Overfull \hbox (51.8048pt too wide) in paragraph at lines 961--961 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (47.99501pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 = Overfull \hbox (93.74501pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 2147480000\T1/ptm/m/n/10 , Overfull \hbox (145.67392pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 days_between_shipments: Overfull \hbox (59.0249pt too wide) in paragraph at lines 961--961 [][]\T1/ptm/m/it/10 float[][] Overfull \hbox (47.99501pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 = Overfull \hbox (48.74501pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 7\T1/ptm/m/n/10 , Overfull \hbox (54.57497pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 du- Overfull \hbox (53.31496pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 ra- Overfull \hbox (60.13475pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 tion: Overfull \hbox (59.0249pt too wide) in paragraph at lines 961--961 [][]\T1/ptm/m/it/10 float[][] Overfull \hbox (47.99501pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 = Overfull \hbox (97.43495pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 3.40282e+38\T1/ptm/m/n/10 , Overfull \hbox (52.35486pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 in- Overfull \hbox (55.48474pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 ter- Overfull \hbox (58.45485pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 ven- Overfull \hbox (89.57469pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 tion_config: Overfull \hbox (55.68495pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 any Overfull \hbox (47.99501pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 = Overfull \hbox (64.85487pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (147.144pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 max_distributed_per_day: Overfull \hbox (51.8048pt too wide) in paragraph at lines 961--961 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (47.99501pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 = Overfull \hbox (93.74501pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 2147480000\T1/ptm/m/n/10 , Overfull \hbox (86.5846pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 max_stock: Overfull \hbox (51.8048pt too wide) in paragraph at lines 961--961 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (47.99501pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 = Overfull \hbox (93.74501pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 2147480000\T1/ptm/m/n/10 , Overfull \hbox (61.80467pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 wait- Overfull \hbox (88.46458pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 ing_period: Overfull \hbox (51.8048pt too wide) in paragraph at lines 961--961 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (47.99501pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 = Overfull \hbox (52.24501pt too wide) in paragraph at lines 961--961 \T1/ptm/m/it/10 0\T1/pcr/m/n/10 ) [14] Overfull \vbox (355.66753pt too high) has occurred while \output is active [15] [16] Overfull \hbox (31.21352pt too wide) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 tsteps_btwn_repetitions: Underfull \hbox (badness 10000) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 get: [][]ob-ject[][] Underfull \hbox (badness 10000) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Ev-ery-one\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 6364) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 start_day: [][]int[][] Underfull \hbox (badness 5203) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 di-ag-nos- Overfull \hbox (63.55446pt too wide) in paragraph at lines 1050--1050 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 BLOOD_SMEAR_PARASITES\TS1/ptm/m/it/10 '\T1/pt m/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 di-ag-nos- Underfull \hbox (badness 10000) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 tic_threshold: Underfull \hbox (badness 10000) in paragraph at lines 1050--1050 [][]\T1/ptm/m/it/10 float[][] = 40\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 mea-sure- Overfull \hbox (1.01384pt too wide) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 ment_sensitivity: Underfull \hbox (badness 10000) in paragraph at lines 1050--1050 [][]\T1/ptm/m/it/10 float[][] = 0.1\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 event_name: Underfull \hbox (badness 10000) in paragraph at lines 1050--1050 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Di-ag- Underfull \hbox (badness 10000) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 nos-tic Sur-vey\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 6364) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 node_ids: [][]list[][] Overfull \hbox (27.58405pt too wide) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 tive_diagnosis_configs: Underfull \hbox (badness 10000) in paragraph at lines 1050--1050 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 neg-a- Overfull \hbox (27.58405pt too wide) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 tive_diagnosis_configs: Overfull \hbox (6.95406pt too wide) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 ceived_test_event: Underfull \hbox (badness 10000) in paragraph at lines 1050--1050 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Re- Underfull \hbox (badness 10000) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 ceived_Test\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 IP_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1050--1050 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 NP_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1050--1050 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 dis-qual-i-fy- Underfull \hbox (badness 10000) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 ing_properties: Overfull \hbox (9.814pt too wide) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 ger_condition_list: Underfull \hbox (badness 10000) in paragraph at lines 1050--1050 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 lis-ten- Underfull \hbox (badness 10000) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 ing_duration: Overfull \hbox (29.97432pt too wide) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 gered_campaign_delay: Underfull \hbox (badness 10000) in paragraph at lines 1050--1050 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , Overfull \hbox (47.68343pt too wide) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 check_eligibility_at_trigger: Overfull \hbox (9.71407pt too wide) in paragraph at lines 1050--1050 \T1/ptm/m/it/10 pire_recent_drugs: [17] Underfull \hbox (badness 10000) in paragraph at lines 1083--1086 []\T1/pcr/b/n/10 diagnostic_type \T1/ptm/m/n/10 ^^U Type of malaria di-ag-nos-t ic used. De-fault is Underfull \hbox (badness 10000) in paragraph at lines 1125--1128 []\T1/ptm/m/n/10 In ga-me-to-cytes/microliter, use mea-sure- Underfull \hbox (badness 10000) in paragraph at lines 1148--1150 []\T1/pcr/b/n/10 measurement_sensitivity \T1/ptm/m/n/10 ^^U Set-ting for \T1/pt m/b/n/10 Mea-sure-ment_Sensitivity \T1/ptm/m/n/10 in [18] Underfull \hbox (badness 10000) in paragraph at lines 1171--1176 []\T1/pcr/b/n/10 IP_restrictions \T1/ptm/m/n/10 ^^U List of In-di-vid-u-al-Prop -erty key:value pairs that Underfull \hbox (badness 10000) in paragraph at lines 1171--1176 \T1/ptm/m/n/10 in-di-vid-u-als must have to re-ceive the di-ag-nos-tic in-ter-v en-tion. For Underfull \hbox (badness 10000) in paragraph at lines 1171--1176 \T1/ptm/m/n/10 ex-am-ple, \T1/pcr/m/n/10 [{"IndividualProperty1":"PropertyValue 1"}, Underfull \hbox (badness 10000) in paragraph at lines 1178--1183 []\T1/pcr/b/n/10 NP_restrictions \T1/ptm/m/n/10 ^^U List of Node-Prop-erty key: value pairs Underfull \hbox (badness 10000) in paragraph at lines 1178--1183 \T1/ptm/m/n/10 that nodes must have to re-ceive the di-ag-nos-tic in-ter-ven-ti on. Underfull \hbox (badness 10000) in paragraph at lines 1178--1183 \T1/ptm/m/n/10 For ex-am-ple, \T1/pcr/m/n/10 [{"NodeProperty1":"PropertyValue1" }, Underfull \hbox (badness 10000) in paragraph at lines 1185--1189 []\T1/pcr/b/n/10 disqualifying_properties \T1/ptm/m/n/10 ^^U List of In-di-vid- u-al-Prop-erty Underfull \hbox (badness 10000) in paragraph at lines 1185--1189 \T1/ptm/m/n/10 key:value pairs that cause an in-ter-ven-tion to be aborted. For ex- Underfull \hbox (badness 10000) in paragraph at lines 1185--1189 \T1/ptm/m/n/10 am-ple, \T1/pcr/m/n/10 [{"IndividualProperty1":"PropertyValue1"} , Underfull \hbox (badness 10000) in paragraph at lines 1208--1211 []\T1/pcr/b/n/10 expire_recent_drugs \T1/ptm/m/n/10 ^^U Adds \T1/pcr/m/n/10 [{" DrugStatus:None"}] \T1/ptm/m/n/10 to \T1/ptm/b/n/10 Prop- [19] Underfull \hbox (badness 10000) in paragraph at lines 1297--1297 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1297--1297 \T1/ptm/m/it/10 drug_code: Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cam- Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 paign_type: Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 MDA\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 6775) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_days: Overfull \hbox (19.21352pt too wide) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 tsteps_btwn_repetitions: Underfull \hbox (badness 7344) in paragraph at lines 1328--1328 [][]\T1/ptm/m/it/10 int[][] = 60\T1/ptm/m/n/10 , \T1/ptm/m/it/10 di-ag- Overfull \hbox (51.55446pt too wide) in paragraph at lines 1328--1328 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 BLOOD_SMEAR_PARASITES\TS1/ptm/m/it/10 '\T1/pt m/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 di-ag-nos- Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 = 40\T1/ptm/m/n/10 , \T1/ptm/m/it/10 mea-sure- Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 ment_sensitivity: Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 [][]\T1/ptm/m/it/10 float[][] = 0.1\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 fmda_radius: Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , Overfull \hbox (6.22408pt too wide) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 node_selection_type: Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 DIS- Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 TANCE_ONLY\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 trig-ger_coverage: Underfull \hbox (badness 5667) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 balls: [][]int[][] = 0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 treat-ment_delay: Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 trig- Overfull \hbox (17.97432pt too wide) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 gered_campaign_delay: Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 tar-get_group: Overfull \hbox (33.88365pt too wide) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 drug_ineligibility_duration: Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , Overfull \hbox (33.19351pt too wide) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Overfull \hbox (26.53346pt too wide) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 dis-qual-i-fy- Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 ing_properties: Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 ger_condition_list: Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 ten-ing_duration: Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 ent_drug_configs: Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 get_residents_only: Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 [][]\T1/ptm/m/it/10 int[][] = 1\T1/ptm/m/n/10 , Overfull \hbox (35.68343pt too wide) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 check_eligibility_at_trigger: Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 [][]\T1/ptm/m/it/10 bool[][] = Underfull \hbox (badness 10000) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 False\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-ceiv- Overfull \hbox (144.47322pt too wide) in paragraph at lines 1328--1328 \T1/ptm/m/it/10 ing_drugs_event_name=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Received _Campaign_Drugs\TS1/ptm/m/it/10 '\T1/pcr/m/n/10 ) [20] [21] [22] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pcr.fd) Underfull \hbox (badness 10000) in paragraph at lines 1479--1482 []\T1/pcr/b/n/10 ind_property_restrictions \T1/ptm/m/n/10 ^^U The set-ting for \T1/ptm/b/n/10 Prop- Underfull \hbox (badness 10000) in paragraph at lines 1524--1524 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_days: [][]list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1524--1524 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age: [][]float[][] = Underfull \hbox (badness 10000) in paragraph at lines 1524--1524 \T1/ptm/m/it/10 1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 drug_configs: [][]list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1524--1524 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-ceiv-ing_drugs_event: Overfull \hbox (57.71327pt too wide) in paragraph at lines 1524--1524 \T1/ptm/m/it/10 emod_api.interventions.common.BroadcastEvent Underfull \hbox (badness 10000) in paragraph at lines 1524--1524 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 rep-e-ti-tions: [][]int[ ][] = Underfull \hbox (badness 10000) in paragraph at lines 1524--1524 \T1/ptm/m/it/10 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tsteps_btwn_repetitions: Underfull \hbox (badness 6348) in paragraph at lines 1524--1524 [][]\T1/ptm/m/it/10 int[][] = 60\T1/ptm/m/n/10 , \T1/ptm/m/it/10 node_ids: [][] list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1524--1524 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ex-pire_recent_drugs: Overfull \hbox (86.50304pt too wide) in paragraph at lines 1524--1524 \T1/ptm/m/it/10 emod_api.interventions.common.PropertyValueChanger Underfull \hbox (badness 10000) in paragraph at lines 1524--1524 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 6032) in paragraph at lines 1524--1524 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1524--1524 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 dis-qual-i- fy- Underfull \hbox (badness 10000) in paragraph at lines 1524--1524 \T1/ptm/m/it/10 ing_properties: [][]list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1524--1524 \T1/ptm/m/it/10 trig-ger_condition_list: [][]list[][] = [23] Underfull \hbox (badness 10000) in paragraph at lines 1539--1539 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_days: [][]list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1539--1539 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age: [][]float[][] = Underfull \hbox (badness 10000) in paragraph at lines 1539--1539 \T1/ptm/m/it/10 1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 drug_configs: [][]list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1539--1539 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-ceiv-ing_drugs_event: Overfull \hbox (63.71327pt too wide) in paragraph at lines 1539--1539 \T1/ptm/m/it/10 emod_api.interventions.common.BroadcastEvent Underfull \hbox (badness 10000) in paragraph at lines 1539--1539 \T1/ptm/m/it/10 tsteps_btwn_repetitions: [][]int[][] Underfull \hbox (badness 7504) in paragraph at lines 1539--1539 \T1/ptm/m/it/10 = 60\T1/ptm/m/n/10 , \T1/ptm/m/it/10 treat-ment_delay: [][]int[ ][] Underfull \hbox (badness 10000) in paragraph at lines 1539--1539 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 BLOOD_SMEAR_PARASITES\TS1/ptm/m/it/10 '\T1/pt m/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1539--1539 \T1/ptm/m/it/10 40\T1/ptm/m/n/10 , \T1/ptm/m/it/10 mea-sure-ment_sensitivity: Underfull \hbox (badness 6063) in paragraph at lines 1539--1539 [][]\T1/ptm/m/it/10 float[][] = 0.1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 node_ids: [ ][]list[][] Overfull \hbox (92.50304pt too wide) in paragraph at lines 1539--1539 \T1/ptm/m/it/10 emod_api.interventions.common.PropertyValueChanger Underfull \hbox (badness 10000) in paragraph at lines 1539--1539 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1539--1539 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1539--1539 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1539--1539 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar-get_gro up: Underfull \hbox (badness 10000) in paragraph at lines 1539--1539 \T1/ptm/m/it/10 any = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Ev-ery-one\TS1/ptm/m/it /10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 trig- Underfull \hbox (badness 10000) in paragraph at lines 1539--1539 \T1/ptm/m/it/10 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 check_eligibility_at_trigger: Underfull \hbox (badness 10000) in paragraph at lines 1540--1543 \T1/ptm/m/n/10 Add an MSAT (mass screen-ing and treat-ment) drug in-ter-ven-tio n to your cam-paign. See [24] Underfull \hbox (badness 10000) in paragraph at lines 1554--1554 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_days: [][]list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1554--1554 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 trig-ger_coverage: Underfull \hbox (badness 7221) in paragraph at lines 1554--1554 [][]\T1/ptm/m/it/10 float[][] = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age: [ ][]float[][] Underfull \hbox (badness 7595) in paragraph at lines 1554--1554 \T1/ptm/m/it/10 = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 drug_configs: [][]list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1554--1554 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-ceiv-ing_drugs_event: Overfull \hbox (63.71327pt too wide) in paragraph at lines 1554--1554 \T1/ptm/m/it/10 emod_api.interventions.common.BroadcastEvent Underfull \hbox (badness 10000) in paragraph at lines 1554--1554 \T1/ptm/m/it/10 tsteps_btwn_repetitions: [][]int[][] Underfull \hbox (badness 10000) in paragraph at lines 1554--1554 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 BLOOD_SMEAR_PARASITES\TS1/ptm/m/it/10 '\T1/pt m/m/n/10 , Overfull \hbox (92.50304pt too wide) in paragraph at lines 1554--1554 \T1/ptm/m/it/10 emod_api.interventions.common.PropertyValueChanger Underfull \hbox (badness 10000) in paragraph at lines 1554--1554 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1554--1554 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1554--1554 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1554--1554 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar-get_gro up: Underfull \hbox (badness 10000) in paragraph at lines 1554--1554 \T1/ptm/m/it/10 any = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Ev-ery-one\TS1/ptm/m/it /10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 trig- Underfull \hbox (badness 7869) in paragraph at lines 1555--1558 \T1/ptm/m/n/10 Add an fMDA (fo-cal mass drug ad-min-is-tra-tion) drug in-ter-ve n-tion to your cam-paign. See Underfull \hbox (badness 10000) in paragraph at lines 1569--1569 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day: [][]int[][] = Underfull \hbox (badness 6141) in paragraph at lines 1569--1569 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age: [][]float[][] = 1 \T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1569--1569 \T1/ptm/m/it/10 re-ceiv-ing_drugs_event: Overfull \hbox (75.71327pt too wide) in paragraph at lines 1569--1569 \T1/ptm/m/it/10 emod_api.interventions.common.BroadcastEvent Overfull \hbox (9.55446pt too wide) in paragraph at lines 1569--1569 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 BLOOD_SMEAR_PARASITES\TS1/ptm/m/it/10 '\T1/pt m/m/n/10 , Overfull \hbox (104.50304pt too wide) in paragraph at lines 1569--1569 \T1/ptm/m/it/10 emod_api.interventions.common.PropertyValueChanger Underfull \hbox (badness 10000) in paragraph at lines 1569--1569 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1569--1569 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1569--1569 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1569--1569 \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1569--1569 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 dis-qual-i- fy- [25] Underfull \hbox (badness 10000) in paragraph at lines 1584--1584 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day: [][]int[][] = Underfull \hbox (badness 10000) in paragraph at lines 1584--1584 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age: [][]float[][] = 1 \T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1584--1584 \T1/ptm/m/it/10 re-ceiv-ing_drugs_event: Overfull \hbox (69.71327pt too wide) in paragraph at lines 1584--1584 \T1/ptm/m/it/10 emod_api.interventions.common.BroadcastEvent Underfull \hbox (badness 7613) in paragraph at lines 1584--1584 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lis-ten-ing_duration: Underfull \hbox (badness 10000) in paragraph at lines 1584--1584 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 trig-ger_covera ge: Underfull \hbox (badness 10000) in paragraph at lines 1584--1584 \T1/ptm/m/it/10 = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 node_selection_type: Underfull \hbox (badness 10000) in paragraph at lines 1584--1584 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 DIS-TANCE_ONLY\ TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1584--1584 \T1/ptm/m/it/10 node_ids: [][]list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1584--1584 \T1/ptm/m/it/10 ex-pire_recent_drugs: Overfull \hbox (98.50304pt too wide) in paragraph at lines 1584--1584 \T1/ptm/m/it/10 emod_api.interventions.common.PropertyValueChanger Underfull \hbox (badness 10000) in paragraph at lines 1584--1584 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1584--1584 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1584--1584 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1584--1584 \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1584--1584 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 dis-qual-i- fy- Underfull \hbox (badness 10000) in paragraph at lines 1599--1599 \T1/ptm/m/it/10 TANCE_ONLY\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ev ent_trigger: [26] Underfull \hbox (badness 5756) in paragraph at lines 1631--1631 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 daily_eir: [][]list[][] Underfull \hbox (badness 5091) in paragraph at lines 1665--1665 [][]\T1/ptm/m/it/10 int[][] = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 node_ids: [][]l ist[][] = None\T1/ptm/m/n/10 , [27] Underfull \hbox (badness 10000) in paragraph at lines 1705--1705 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1705--1705 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , [28] Underfull \hbox (badness 10000) in paragraph at lines 1778--1778 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1778--1778 \T1/ptm/m/it/10 start_day: [][]int[][] Underfull \hbox (badness 10000) in paragraph at lines 1778--1778 \T1/ptm/m/it/10 = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er- Overfull \hbox (11.51352pt too wide) in paragraph at lines 1778--1778 \T1/ptm/m/it/10 killing_initial_effect: Underfull \hbox (badness 10000) in paragraph at lines 1778--1778 [][]\T1/ptm/m/it/10 float[][] = 1\T1/ptm/m/n/10 , Overfull \hbox (38.20403pt too wide) in paragraph at lines 1778--1778 \T1/ptm/m/it/10 killing_box_duration_days: Underfull \hbox (badness 10000) in paragraph at lines 1778--1778 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , Overfull \hbox (98.1333pt too wide) in paragraph at lines 1778--1778 \T1/ptm/m/it/10 killing_exponential_decay_constant_days: Underfull \hbox (badness 10000) in paragraph at lines 1778--1778 [][]\T1/ptm/m/it/10 int[][] = 90\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Overfull \hbox (13.73363pt too wide) in paragraph at lines 1778--1778 \T1/ptm/m/it/10 pelling_initial_effect: Underfull \hbox (badness 10000) in paragraph at lines 1778--1778 [][]\T1/ptm/m/it/10 float[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Overfull \hbox (40.42413pt too wide) in paragraph at lines 1778--1778 \T1/ptm/m/it/10 pelling_box_duration_days: Underfull \hbox (badness 10000) in paragraph at lines 1778--1778 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Overfull \hbox (100.35341pt too wide) in paragraph at lines 1778--1778 \T1/ptm/m/it/10 pelling_exponential_decay_constant_days: [29] Underfull \hbox (badness 10000) in paragraph at lines 1838--1838 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day\T1/ptm/m/n /10 , Underfull \hbox (badness 10000) in paragraph at lines 1847--1847 []\T1/ptm/m/it/10 schema_path_container\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1847--1847 [][]\T1/ptm/m/it/10 float[][] = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-mo- Underfull \hbox (badness 10000) in paragraph at lines 1847--1847 \T1/ptm/m/it/10 killing_exponential_decay_rate: Underfull \hbox (badness 5161) in paragraph at lines 1890--1890 \T1/ptm/m/it/10 = 1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 killing_effect: [][]float [][] [30] Underfull \hbox (badness 10000) in paragraph at lines 1919--1921 \T1/ptm/m/n/10 TER_VEGETATION^^Q, ^^PHU-MAN_POPULATION^^Q, ^^PCON-STANT^^Q, ^^P BRACK- Underfull \hbox (badness 10000) in paragraph at lines 1946--1946 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , [31] Underfull \hbox (badness 10000) in paragraph at lines 1963--1963 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1963--1963 \T1/ptm/m/it/10 re-leased_number: Underfull \hbox (badness 5954) in paragraph at lines 1963--1963 [][]\T1/ptm/m/it/10 int[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 1963--1963 \T1/ptm/m/it/10 leased_fraction: Underfull \hbox (badness 10000) in paragraph at lines 1963--1963 \T1/ptm/m/it/10 leased_infectious: Underfull \hbox (badness 10000) in paragraph at lines 1963--1963 [][]\T1/ptm/m/it/10 float[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 1963--1963 \T1/ptm/m/it/10 leased_species: Underfull \hbox (badness 10000) in paragraph at lines 1963--1963 \T1/ptm/m/it/10 re-leased_genome: Underfull \hbox (badness 10000) in paragraph at lines 1963--1963 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1983--1985 []\T1/pcr/b/n/10 released_infectious \T1/ptm/m/n/10 ^^U The frac-tion of vec-to rs re-leased that Underfull \hbox (badness 10000) in paragraph at lines 1983--1985 \T1/ptm/m/n/10 are to be in-fec-tious. One can only use this fea-ture when Overfull \hbox (16.27205pt too wide) in paragraph at lines 1983--1985 \T1/ptm/m/n/10 `Malaria_Model'!='MALARIA_MECHANISTIC_MODEL_WITH_PARASITE_GENETI CS' Underfull \hbox (badness 10000) in paragraph at lines 2009--2009 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Overfull \hbox (16.35448pt too wide) in paragraph at lines 2009--2009 \T1/ptm/m/it/10 start_day: Underfull \hbox (badness 10000) in paragraph at lines 2009--2009 [][]\T1/ptm/m/it/10 int[][] Underfull \hbox (badness 10000) in paragraph at lines 2009--2009 \T1/ptm/m/it/10 = 1\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2009--2009 \T1/ptm/m/it/10 file- Overfull \hbox (2.35487pt too wide) in paragraph at lines 2009--2009 \T1/ptm/m/it/10 None\T1/pcr/m/n/10 ) [32] Underfull \hbox (badness 10000) in paragraph at lines 2035--2035 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2035--2035 \T1/ptm/m/it/10 start_day: [][]int[][] Underfull \hbox (badness 10000) in paragraph at lines 2035--2035 \T1/ptm/m/it/10 = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-mo- Overfull \hbox (2.73457pt too wide) in paragraph at lines 2035--2035 \T1/ptm/m/it/10 graphic_coverage: Overfull \hbox (14.36418pt too wide) in paragraph at lines 2035--2035 \T1/ptm/m/it/10 get_num_individuals: Underfull \hbox (badness 10000) in paragraph at lines 2035--2035 [][]\T1/ptm/m/it/10 int[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2035--2035 \T1/ptm/m/it/10 node_ids: [][]list[][] Overfull \hbox (52.97314pt too wide) in paragraph at lines 2035--2035 \T1/ptm/m/it/10 timesteps_between_repetitions: Underfull \hbox (badness 10000) in paragraph at lines 2035--2035 [][]\T1/ptm/m/it/10 int[][] = 365\T1/ptm/m/n/10 , Overfull \hbox (32.53346pt too wide) in paragraph at lines 2035--2035 \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 2035--2035 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Overfull \hbox (39.19351pt too wide) in paragraph at lines 2035--2035 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 2035--2035 \T1/ptm/m/it/10 get_age_min: Underfull \hbox (badness 10000) in paragraph at lines 2035--2035 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar- Underfull \hbox (badness 10000) in paragraph at lines 2035--2035 \T1/ptm/m/it/10 get_age_max: Underfull \hbox (badness 10000) in paragraph at lines 2035--2035 \T1/ptm/m/it/10 get_gender: Underfull \hbox (badness 5359) in paragraph at lines 2035--2035 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 All\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ig- Underfull \hbox (badness 10000) in paragraph at lines 2035--2035 \T1/ptm/m/it/10 nore_immunity: Underfull \hbox (badness 10000) in paragraph at lines 2035--2035 [][]\T1/ptm/m/it/10 bool[][] = True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2035--2035 \T1/ptm/m/it/10 in-cu-ba- Overfull \hbox (16.02399pt too wide) in paragraph at lines 2035--2035 \T1/ptm/m/it/10 tion_period_override: Underfull \hbox (badness 5893) in paragraph at lines 2059--2061 []\T1/pcr/b/n/10 repetitions \T1/ptm/m/n/10 ^^U The num-ber of times an in-ter- ven-tion is given, used with [33] Overfull \hbox (5.18481pt too wide) in paragraph at lines 2114--2114 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , Overfull \hbox (4.35448pt too wide) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 start_day: Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 de-mo- Overfull \hbox (38.73457pt too wide) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 graphic_coverage: Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 [][]\T1/ptm/m/it/10 float[][] = Overfull \hbox (50.36418pt too wide) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 get_num_individuals: Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 [][]\T1/ptm/m/it/10 int[][] = Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (2.6847pt too wide) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 node_ids: Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 rep-e-ti- Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 tions: Overfull \hbox (88.97314pt too wide) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 timesteps_between_repetitions: Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 [][]\T1/ptm/m/it/10 int[][] Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 = 365\T1/ptm/m/n/10 , Overfull \hbox (68.53346pt too wide) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (75.19351pt too wide) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 tar- Overfull \hbox (17.93463pt too wide) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 get_age_min: Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 [][]\T1/ptm/m/it/10 int[][] = Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar- Overfull \hbox (19.59468pt too wide) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 get_age_max: Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 [][]\T1/ptm/m/it/10 int[][] = Overfull \hbox (11.3646pt too wide) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 get_gender: Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 [][]\T1/ptm/m/it/10 str[][] = Overfull \hbox (26.75435pt too wide) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 nore_immunity: Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 [][]\T1/ptm/m/it/10 bool[][] = Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 in-cu-ba- Overfull \hbox (52.02399pt too wide) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 tion_period_override: Underfull \hbox (badness 5077) in paragraph at lines 2114--2114 [][]\T1/ptm/m/it/10 int[][] = - Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cre- Overfull \hbox (90.54375pt too wide) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 ate_nucleotide_sequence_from: Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 [][]\T1/ptm/m/it/10 str[][] = Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 BAR- Overfull \hbox (33.99452pt too wide) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 CODE_STRING\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 bar- Overfull \hbox (13.79442pt too wide) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 code_string: Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 [][]\T1/ptm/m/it/10 str[][] = Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (52.88371pt too wide) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 drug_resistant_string: Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 [][]\T1/ptm/m/it/10 str[][] = Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (43.23422pt too wide) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 msp_variant_value: Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 [][]\T1/ptm/m/it/10 int[][] = Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (64.34395pt too wide) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 pfemp1_variants_values: Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 bar- Overfull \hbox (155.51305pt too wide) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 code_allele_frequencies_per_genome_location: Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (194.60234pt too wide) in paragraph at lines 2114--2114 \T1/ptm/m/it/10 drug_resistant_allele_frequencies_per_genome_location: Underfull \hbox (badness 10000) in paragraph at lines 2114--2114 [][]\T1/ptm/m/it/10 list[][] = [34] Overfull \vbox (135.66997pt too high) has occurred while \output is active [35] Underfull \hbox (badness 5893) in paragraph at lines 2141--2143 []\T1/pcr/b/n/10 repetitions \T1/ptm/m/n/10 ^^U The num-ber of times an in-ter- ven-tion is given, used with [36] Overfull \hbox (11.18481pt too wide) in paragraph at lines 2230--2230 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , Overfull \hbox (10.35448pt too wide) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 start_day: Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 de-mo- Overfull \hbox (44.73457pt too wide) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 graphic_coverage: Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 [][]\T1/ptm/m/it/10 float[][] Underfull \hbox (badness 8151) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 = 1.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 tar- Overfull \hbox (56.36418pt too wide) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 get_num_individuals: Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 [][]\T1/ptm/m/it/10 int[][] = Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (8.6847pt too wide) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 node_ids: Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 rep-e-ti- Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 tions: Overfull \hbox (94.97314pt too wide) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 timesteps_between_repetitions: Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 [][]\T1/ptm/m/it/10 int[][] = Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 365\T1/ptm/m/n/10 , Overfull \hbox (74.53346pt too wide) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (81.19351pt too wide) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 tar- Overfull \hbox (23.93463pt too wide) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 get_age_min: Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 [][]\T1/ptm/m/it/10 int[][] = Overfull \hbox (25.59468pt too wide) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 get_age_max: Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 [][]\T1/ptm/m/it/10 int[][] = Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 125\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 tar- Overfull \hbox (17.3646pt too wide) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 get_gender: Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 [][]\T1/ptm/m/it/10 str[][] = Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 All\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 ig- Overfull \hbox (32.75435pt too wide) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 nore_immunity: Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 in-cu-ba- Overfull \hbox (58.02399pt too wide) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 tion_period_override: Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 [][]\T1/ptm/m/it/10 int[][] = Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 - 1\T1/ptm/m/n/10 , Overfull \hbox (10.34447pt too wide) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 irbc_type: Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 mi- Overfull \hbox (42.5643pt too wide) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 nor_epitope_type: Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (10.3446pt too wide) in paragraph at lines 2230--2230 \T1/ptm/m/it/10 msp_type: Underfull \hbox (badness 10000) in paragraph at lines 2230--2230 [][]\T1/ptm/m/it/10 int[][] = [37] Overfull \vbox (3.66997pt too high) has occurred while \output is active [38] Underfull \hbox (badness 5893) in paragraph at lines 2257--2259 []\T1/pcr/b/n/10 repetitions \T1/ptm/m/n/10 ^^U The num-ber of times an in-ter- ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 2315--2315 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day: Underfull \hbox (badness 10000) in paragraph at lines 2315--2315 [][]\T1/ptm/m/it/10 int[][] = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-mo- Underfull \hbox (badness 10000) in paragraph at lines 2315--2315 \T1/ptm/m/it/10 graphic_coverage: Underfull \hbox (badness 10000) in paragraph at lines 2315--2315 [][]\T1/ptm/m/it/10 float[][] = 1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar- Underfull \hbox (badness 10000) in paragraph at lines 2315--2315 \T1/ptm/m/it/10 get_num_individuals: Underfull \hbox (badness 10000) in paragraph at lines 2315--2315 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 rep-e- Underfull \hbox (badness 10000) in paragraph at lines 2315--2315 \T1/ptm/m/it/10 ti-tions: [][]int[][] = 1\T1/ptm/m/n/10 , Overfull \hbox (22.97314pt too wide) in paragraph at lines 2315--2315 \T1/ptm/m/it/10 timesteps_between_repetitions: Underfull \hbox (badness 10000) in paragraph at lines 2315--2315 [][]\T1/ptm/m/it/10 int[][] = 365\T1/ptm/m/n/10 , Overfull \hbox (2.53346pt too wide) in paragraph at lines 2315--2315 \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 2315--2315 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Overfull \hbox (9.19351pt too wide) in paragraph at lines 2315--2315 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 2315--2315 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar- Underfull \hbox (badness 10000) in paragraph at lines 2315--2315 \T1/ptm/m/it/10 get_age_min: [][]int[][] = [39] Underfull \hbox (badness 5893) in paragraph at lines 2341--2343 []\T1/pcr/b/n/10 repetitions \T1/ptm/m/n/10 ^^U The num-ber of times an in-ter- ven-tion is given, used with [40] Underfull \hbox (badness 10000) in paragraph at lines 2382--2382 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2382--2382 \T1/ptm/m/it/10 cide_name: Overfull \hbox (29.51352pt too wide) in paragraph at lines 2382--2382 \T1/ptm/m/it/10 killing_initial_effect: Underfull \hbox (badness 10000) in paragraph at lines 2382--2382 [][]\T1/ptm/m/it/10 float[][] = 1\T1/ptm/m/n/10 , Overfull \hbox (32.87419pt too wide) in paragraph at lines 2382--2382 \T1/ptm/m/it/10 killing_box_duration: Underfull \hbox (badness 10000) in paragraph at lines 2382--2382 [][]\T1/ptm/m/it/10 int[][] = 365\T1/ptm/m/n/10 , Overfull \hbox (74.87367pt too wide) in paragraph at lines 2382--2382 \T1/ptm/m/it/10 killing_exponential_decay_rate: Underfull \hbox (badness 10000) in paragraph at lines 2382--2382 [][]\T1/ptm/m/it/10 float[][] = 0\T1/ptm/m/n/10 , Overfull \hbox (59.18481pt too wide) in paragraph at lines 2424--2424 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , Overfull \hbox (55.38477pt too wide) in paragraph at lines 2424--2424 \T1/ptm/m/it/10 df=None\T1/ptm/m/n/10 , Overfull \hbox (58.35448pt too wide) in paragraph at lines 2424--2424 \T1/ptm/m/it/10 start_day: Overfull \hbox (27.8048pt too wide) in paragraph at lines 2424--2424 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (23.99501pt too wide) in paragraph at lines 2424--2424 \T1/ptm/m/it/10 = Overfull \hbox (24.74501pt too wide) in paragraph at lines 2424--2424 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , Overfull \hbox (33.53479pt too wide) in paragraph at lines 2424--2424 \T1/ptm/m/it/10 rep- Overfull \hbox (25.01491pt too wide) in paragraph at lines 2424--2424 \T1/ptm/m/it/10 e- Overfull \hbox (26.13475pt too wide) in paragraph at lines 2424--2424 \T1/ptm/m/it/10 ti- Overfull \hbox (40.02464pt too wide) in paragraph at lines 2424--2424 \T1/ptm/m/it/10 tions: Overfull \hbox (27.8048pt too wide) in paragraph at lines 2424--2424 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (23.99501pt too wide) in paragraph at lines 2424--2424 \T1/ptm/m/it/10 = Overfull \hbox (24.74501pt too wide) in paragraph at lines 2424--2424 \T1/ptm/m/it/10 1\T1/ptm/m/n/10 , Overfull \hbox (142.97314pt too wide) in paragraph at lines 2424--2424 \T1/ptm/m/it/10 timesteps_between_repetitions: Overfull \hbox (27.8048pt too wide) in paragraph at lines 2424--2424 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (23.99501pt too wide) in paragraph at lines 2424--2424 \T1/ptm/m/it/10 = Overfull \hbox (34.74501pt too wide) in paragraph at lines 2424--2424 \T1/ptm/m/it/10 365\T1/ptm/m/n/10 , Overfull \hbox (129.19351pt too wide) in paragraph at lines 2424--2424 \T1/ptm/m/it/10 node_property_restrictions: Overfull \hbox (29.47458pt too wide) in paragraph at lines 2424--2424 [][]\T1/ptm/m/it/10 list[][] Overfull \hbox (23.99501pt too wide) in paragraph at lines 2424--2424 \T1/ptm/m/it/10 = Overfull \hbox (44.35487pt too wide) in paragraph at lines 2424--2424 \T1/ptm/m/it/10 None\T1/pcr/m/n/10 ) [41] [42] Overfull \hbox (71.18481pt too wide) in paragraph at lines 2498--2498 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , Overfull \hbox (70.35448pt too wide) in paragraph at lines 2498--2498 \T1/ptm/m/it/10 start_day: Overfull \hbox (42.3048pt too wide) in paragraph at lines 2498--2498 [][]\T1/ptm/m/it/10 int[][]\T1/ptm/m/n/10 , Overfull \hbox (68.6847pt too wide) in paragraph at lines 2498--2498 \T1/ptm/m/it/10 node_ids: Overfull \hbox (43.97458pt too wide) in paragraph at lines 2498--2498 [][]\T1/ptm/m/it/10 list[][]\T1/ptm/m/n/10 , Overfull \hbox (50.35486pt too wide) in paragraph at lines 2498--2498 \T1/ptm/m/it/10 habi- Overfull \hbox (72.57431pt too wide) in paragraph at lines 2498--2498 \T1/ptm/m/it/10 tat_scales: Overfull \hbox (43.97458pt too wide) in paragraph at lines 2498--2498 [][]\T1/ptm/m/it/10 list[][]\T1/ptm/m/n/10 , Overfull \hbox (45.53479pt too wide) in paragraph at lines 2498--2498 \T1/ptm/m/it/10 rep- Overfull \hbox (37.01491pt too wide) in paragraph at lines 2498--2498 \T1/ptm/m/it/10 e- Overfull \hbox (38.13475pt too wide) in paragraph at lines 2498--2498 \T1/ptm/m/it/10 ti- Overfull \hbox (52.02464pt too wide) in paragraph at lines 2498--2498 \T1/ptm/m/it/10 tions: Overfull \hbox (42.3048pt too wide) in paragraph at lines 2498--2498 [][]\T1/ptm/m/it/10 int[][]\T1/ptm/m/n/10 , Overfull \hbox (154.97314pt too wide) in paragraph at lines 2498--2498 \T1/ptm/m/it/10 timesteps_between_repetitions: Overfull \hbox (42.3048pt too wide) in paragraph at lines 2498--2498 [][]\T1/ptm/m/it/10 int[][]\T1/ptm/m/n/10 , Overfull \hbox (141.19351pt too wide) in paragraph at lines 2498--2498 \T1/ptm/m/it/10 node_property_restrictions: Overfull \hbox (47.47458pt too wide) in paragraph at lines 2498--2498 [][]\T1/ptm/m/it/10 list[][]\T1/pcr/m/n/10 ) Underfull \hbox (badness 5893) in paragraph at lines 2526--2528 []\T1/pcr/b/n/10 repetitions \T1/ptm/m/n/10 ^^U The num-ber of times an in-ter- ven-tion is given, used with [43] Underfull \hbox (badness 10000) in paragraph at lines 2552--2552 \T1/ptm/m/it/10 = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 spray_coverage: Overfull \hbox (5.18481pt too wide) in paragraph at lines 2577--2577 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , Overfull \hbox (4.35448pt too wide) in paragraph at lines 2577--2577 \T1/ptm/m/it/10 start_day: Underfull \hbox (badness 10000) in paragraph at lines 2577--2577 \T1/ptm/m/it/10 file- Underfull \hbox (badness 10000) in paragraph at lines 2577--2577 \T1/ptm/m/it/10 name: Underfull \hbox (badness 10000) in paragraph at lines 2577--2577 [][]\T1/ptm/m/it/10 str[][] = [44] Underfull \hbox (badness 6893) in paragraph at lines 2594--2594 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day: [][]int[] [] = 0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2638--2638 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2658--2658 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Overfull \hbox (10.35448pt too wide) in paragraph at lines 2658--2658 \T1/ptm/m/it/10 start_day: Underfull \hbox (badness 10000) in paragraph at lines 2658--2658 \T1/ptm/m/it/10 tar-gets: Underfull \hbox (badness 10000) in paragraph at lines 2658--2658 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2658--2658 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2658--2658 \T1/ptm/m/it/10 drug: Underfull \hbox (badness 10000) in paragraph at lines 2658--2658 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2658--2658 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (8.6847pt too wide) in paragraph at lines 2658--2658 \T1/ptm/m/it/10 node_ids: Underfull \hbox (badness 10000) in paragraph at lines 2658--2658 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2658--2658 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (74.53346pt too wide) in paragraph at lines 2658--2658 \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 2658--2658 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2658--2658 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (81.88365pt too wide) in paragraph at lines 2658--2658 \T1/ptm/m/it/10 drug_ineligibility_duration: Underfull \hbox (badness 6204) in paragraph at lines 2658--2658 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 du- Underfull \hbox (badness 10000) in paragraph at lines 2658--2658 \T1/ptm/m/it/10 ra-tion: Underfull \hbox (badness 10000) in paragraph at lines 2658--2658 [][]\T1/ptm/m/it/10 int[][] = Underfull \hbox (badness 10000) in paragraph at lines 2658--2658 \T1/ptm/m/it/10 - 1\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2658--2658 \T1/ptm/m/it/10 broad- Overfull \hbox (41.29442pt too wide) in paragraph at lines 2658--2658 \T1/ptm/m/it/10 cast_event_name: Underfull \hbox (badness 10000) in paragraph at lines 2658--2658 [][]\T1/ptm/m/it/10 str[][] = Underfull \hbox (badness 10000) in paragraph at lines 2658--2658 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Re- Overfull \hbox (48.38399pt too wide) in paragraph at lines 2658--2658 \T1/ptm/m/it/10 ceived_Treatment\TS1/ptm/m/it/10 '\T1/pcr/m/n/10 ) [45] Underfull \hbox (badness 10000) in paragraph at lines 2674--2678 []\T1/pcr/b/n/10 of individuals to target with the intervention. Default is Underfull \hbox (badness 10000) in paragraph at lines 2674--2678 \T1/ptm/m/n/10 (\T1/pcr/m/sl/10 properties\T1/ptm/m/n/10 ) ^^U \T1/pcr/m/n/10 [ { "trigger":"NewClinicalCase","coverage":0. Underfull \hbox (badness 10000) in paragraph at lines 2674--2678 \T1/pcr/m/n/10 8,"agemin":15,"agemax":70, "seek":0.4,"rate":0.3}, Underfull \hbox (badness 10000) in paragraph at lines 2674--2678 \T1/pcr/m/n/10 {"trigger":"NewSevereCase","coverage":0.8,"seek":0.6, Underfull \hbox (badness 10000) in paragraph at lines 2692--2693 []\T1/pcr/b/n/10 must have to receive the intervention. For example, Underfull \hbox (badness 10000) in paragraph at lines 2692--2693 \T1/ptm/m/n/10 (\T1/pcr/m/sl/10 individuals\T1/ptm/m/n/10 ) ^^U \T1/pcr/m/n/10 ["IndividualProperty1:PropertyValue1", [46] Underfull \hbox (badness 10000) in paragraph at lines 2722--2722 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day: [][]int[][] = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 dis- Underfull \hbox (badness 10000) in paragraph at lines 2722--2722 \T1/ptm/m/it/10 0.0013698630136986301\T1/ptm/m/n/10 , \T1/ptm/m/it/10 killing_e ff: Underfull \hbox (badness 10000) in paragraph at lines 2722--2722 \T1/ptm/m/it/10 0.0006849315068493151\T1/ptm/m/n/10 , \T1/ptm/m/it/10 iv_name: Underfull \hbox (badness 10000) in paragraph at lines 2722--2722 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Us-ageDe-pen-de ntBed-net\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2722--2722 \T1/ptm/m/it/10 sonal_dependence: [][]dict[][] = None\T1/ptm/m/n/10 , [47] [48] Underfull \hbox (badness 10000) in paragraph at lines 2921--2921 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2921--2921 \T1/ptm/m/it/10 start_day\T1/ptm/m/n/10 , \T1/ptm/m/it/10 file- [49] Underfull \hbox (badness 10000) in paragraph at lines 2932--2932 [][]\T1/ptm/m/it/10 int[][] = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-mo- Underfull \hbox (badness 10000) in paragraph at lines 2932--2932 \T1/ptm/m/it/10 graphic_coverage: Underfull \hbox (badness 10000) in paragraph at lines 2932--2932 [][]\T1/ptm/m/it/10 float[][] = 1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar- Underfull \hbox (badness 10000) in paragraph at lines 2932--2932 \T1/ptm/m/it/10 get_num_individuals: Underfull \hbox (badness 10000) in paragraph at lines 2932--2932 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 rep- Underfull \hbox (badness 7273) in paragraph at lines 2932--2932 \T1/ptm/m/it/10 e-ti-tions: [][]int[][] = 1\T1/ptm/m/n/10 , Overfull \hbox (34.97314pt too wide) in paragraph at lines 2932--2932 \T1/ptm/m/it/10 timesteps_between_repetitions: Underfull \hbox (badness 10000) in paragraph at lines 2932--2932 [][]\T1/ptm/m/it/10 int[][] = 365\T1/ptm/m/n/10 , Overfull \hbox (14.53346pt too wide) in paragraph at lines 2932--2932 \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 2932--2932 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Overfull \hbox (21.19351pt too wide) in paragraph at lines 2932--2932 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 2932--2932 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar- Underfull \hbox (badness 7667) in paragraph at lines 2932--2932 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 All\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 broad- Underfull \hbox (badness 10000) in paragraph at lines 2932--2932 \T1/ptm/m/it/10 cast_event: [][]str[][] = Underfull \hbox (badness 10000) in paragraph at lines 2932--2932 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 vac-cine_type: Underfull \hbox (badness 10000) in paragraph at lines 2932--2932 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Ac-qui-si-tion- Underfull \hbox (badness 10000) in paragraph at lines 2932--2932 \T1/ptm/m/it/10 Block-ing\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 vac - Underfull \hbox (badness 10000) in paragraph at lines 2932--2932 \T1/ptm/m/it/10 vac-cine_initial_effect: Underfull \hbox (badness 10000) in paragraph at lines 2932--2932 [][]\T1/ptm/m/it/10 float[][] = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 vac- Underfull \hbox (badness 10000) in paragraph at lines 2932--2932 \T1/ptm/m/it/10 cine_box_duration: Underfull \hbox (badness 10000) in paragraph at lines 2932--2932 [][]\T1/ptm/m/it/10 int[][] = 365\T1/ptm/m/n/10 , \T1/ptm/m/it/10 vac- Overfull \hbox (29.97394pt too wide) in paragraph at lines 2932--2932 \T1/ptm/m/it/10 cine_exponential_decay_rate: Underfull \hbox (badness 10000) in paragraph at lines 2932--2932 [][]\T1/ptm/m/it/10 float[][] = 1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ef-fi- Overfull \hbox (2.56361pt too wide) in paragraph at lines 2932--2932 \T1/ptm/m/it/10 cacy_is_multiplicative: Underfull \hbox (badness 5893) in paragraph at lines 2958--2960 []\T1/pcr/b/n/10 repetitions \T1/ptm/m/n/10 ^^U The num-ber of times an in-ter- ven-tion is given, used with [50] Underfull \hbox (badness 10000) in paragraph at lines 3020--3020 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3020--3020 \T1/ptm/m/it/10 start_day\T1/ptm/m/n/10 , \T1/ptm/m/it/10 file- [51] Underfull \hbox (badness 10000) in paragraph at lines 3055--3055 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3055--3055 \T1/ptm/m/it/10 start_day: [][]int[][] = Underfull \hbox (badness 10000) in paragraph at lines 3055--3055 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 du-ra-tion_days: Underfull \hbox (badness 10000) in paragraph at lines 3055--3055 [][]\T1/ptm/m/it/10 int[][] = 365000\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3055--3055 \T1/ptm/m/it/10 clude_vector_state: Underfull \hbox (badness 10000) in paragraph at lines 3055--3055 [][]\T1/ptm/m/it/10 int[][] = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 strat- Underfull \hbox (badness 10000) in paragraph at lines 3055--3055 \T1/ptm/m/it/10 ify_by: [][]str[][] = Underfull \hbox (badness 10000) in paragraph at lines 3055--3055 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 GENOME\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ ptm/m/it/10 com- Overfull \hbox (9.02399pt too wide) in paragraph at lines 3055--3055 \T1/ptm/m/it/10 bine_similar_genomes: Underfull \hbox (badness 10000) in paragraph at lines 3055--3055 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 spe- Overfull \hbox (102.76315pt too wide) in paragraph at lines 3055--3055 \T1/ptm/m/it/10 cific_genome_combinations_for_stratification: Underfull \hbox (badness 10000) in paragraph at lines 3055--3055 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 al- Overfull \hbox (64.54318pt too wide) in paragraph at lines 3055--3055 \T1/ptm/m/it/10 lele_combinations_for_stratification: Overfull \hbox (2.32376pt too wide) in paragraph at lines 3055--3055 \T1/ptm/m/it/10 les_for_stratification: Underfull \hbox (badness 10000) in paragraph at lines 3055--3055 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- [52] Underfull \hbox (badness 10000) in paragraph at lines 3135--3135 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3154--3154 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 6893) in paragraph at lines 3154--3154 \T1/ptm/m/it/10 = 365000\T1/ptm/m/n/10 , \T1/ptm/m/it/10 nodes: Underfull \hbox (badness 5847) in paragraph at lines 3154--3154 \T1/ptm/m/it/10 ing_interval: [][]float[][] Underfull \hbox (badness 10000) in paragraph at lines 3154--3154 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in-di-vid- Underfull \hbox (badness 10000) in paragraph at lines 3154--3154 \T1/ptm/m/it/10 ual_property_filter: Underfull \hbox (badness 10000) in paragraph at lines 3154--3154 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , \T1/ptm/m/it/ 10 in-fec- Underfull \hbox (badness 10000) in paragraph at lines 3154--3154 \T1/ptm/m/it/10 tious-ness_bins: Underfull \hbox (badness 10000) in paragraph at lines 3154--3154 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Overfull \hbox (4.30418pt too wide) in paragraph at lines 3154--3154 \T1/ptm/m/it/10 max_number_reports: Underfull \hbox (badness 7291) in paragraph at lines 3154--3154 [][]\T1/ptm/m/it/10 int[][] = 100\T1/ptm/m/n/10 , \T1/ptm/m/it/10 par-a- Underfull \hbox (badness 10000) in paragraph at lines 3154--3154 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- [53] Underfull \hbox (badness 10000) in paragraph at lines 3215--3215 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i- Underfull \hbox (badness 10000) in paragraph at lines 3231--3231 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3231--3231 \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3231--3231 \T1/ptm/m/it/10 start_day: Underfull \hbox (badness 10000) in paragraph at lines 3231--3231 \T1/ptm/m/it/10 ra-tion_days: Underfull \hbox (badness 10000) in paragraph at lines 3231--3231 \T1/ptm/m/it/10 nodes: Overfull \hbox (3.20416pt too wide) in paragraph at lines 3231--3231 \T1/ptm/m/it/10 pretty_format: Overfull \hbox (15.2441pt too wide) in paragraph at lines 3231--3231 \T1/ptm/m/it/10 port_description: [54] Underfull \hbox (badness 10000) in paragraph at lines 3271--3271 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3271--3271 \T1/ptm/m/it/10 = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Re-port-Malar- Underfull \hbox (badness 10000) in paragraph at lines 3271--3271 \T1/ptm/m/it/10 i-aFil-tered.json\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3271--3271 \T1/ptm/m/it/10 min_age_years: Underfull \hbox (badness 10000) in paragraph at lines 3271--3271 [][]\T1/ptm/m/it/10 float[][] = 0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3271--3271 \T1/ptm/m/it/10 max_age_years: Underfull \hbox (badness 10000) in paragraph at lines 3271--3271 [][]\T1/ptm/m/it/10 float[][] = 125\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3271--3271 \T1/ptm/m/it/10 has_interventions: Overfull \hbox (74.41385pt too wide) in paragraph at lines 3271--3271 \T1/ptm/m/it/10 clude_30day_avg_infection_duration: [55] Underfull \hbox (badness 10000) in paragraph at lines 3321--3321 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3321--3321 \T1/ptm/m/it/10 man- Underfull \hbox (badness 10000) in paragraph at lines 3321--3321 \T1/ptm/m/it/10 i-fest\T1/ptm/m/n/10 , Overfull \hbox (10.35448pt too wide) in paragraph at lines 3321--3321 \T1/ptm/m/it/10 start_day: Overfull \hbox (6.45485pt too wide) in paragraph at lines 3321--3321 \T1/ptm/m/it/10 end_day: Underfull \hbox (badness 10000) in paragraph at lines 3321--3321 [][]\T1/ptm/m/it/10 int[][] = Overfull \hbox (1.74501pt too wide) in paragraph at lines 3321--3321 \T1/ptm/m/it/10 365000\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3321--3321 \T1/ptm/m/it/10 re-port- Overfull \hbox (21.46431pt too wide) in paragraph at lines 3321--3321 \T1/ptm/m/it/10 ing_interval: Underfull \hbox (badness 10000) in paragraph at lines 3321--3321 \T1/ptm/m/it/10 nodes: Underfull \hbox (badness 10000) in paragraph at lines 3321--3321 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 3321--3321 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3321--3321 \T1/ptm/m/it/10 re- Overfull \hbox (28.1245pt too wide) in paragraph at lines 3321--3321 \T1/ptm/m/it/10 port_filename: Underfull \hbox (badness 10000) in paragraph at lines 3321--3321 [][]\T1/ptm/m/it/10 str[][] = Underfull \hbox (badness 10000) in paragraph at lines 3321--3321 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Spa- Underfull \hbox (badness 10000) in paragraph at lines 3321--3321 \T1/ptm/m/it/10 tial-Re- Underfull \hbox (badness 10000) in paragraph at lines 3321--3321 \T1/ptm/m/it/10 port- Underfull \hbox (badness 10000) in paragraph at lines 3321--3321 \T1/ptm/m/it/10 Malar- Underfull \hbox (badness 10000) in paragraph at lines 3321--3321 \T1/ptm/m/it/10 i-aFil- Underfull \hbox (badness 10000) in paragraph at lines 3321--3321 \T1/ptm/m/it/10 tered\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3321--3321 \T1/ptm/m/it/10 spa- Overfull \hbox (56.87419pt too wide) in paragraph at lines 3321--3321 \T1/ptm/m/it/10 tial_output_channels: Underfull \hbox (badness 10000) in paragraph at lines 3321--3321 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 3349--3357 \T1/ptm/m/n/10 ^^PBlood_Smear_Gametocyte_Prevalence^^Q, ^^PBlood_Smear_Parasite _Prevalence^^Q, Underfull \hbox (badness 10000) in paragraph at lines 3349--3357 \T1/ptm/m/n/10 ^^PCam-paign_Cost^^Q, ^^PDaily_Bites_Per_Human^^Q, ^^PDaily_EIR^ ^Q, ^^PDis-ease_Deaths^^Q, Underfull \hbox (badness 10000) in paragraph at lines 3349--3357 \T1/ptm/m/n/10 ^^PNew_Reported_Infections^^Q, ^^PNew_Severe_Cases^^Q, ^^PPCR_Ga metocyte_Prevalence^^Q, Underfull \hbox (badness 10000) in paragraph at lines 3349--3357 \T1/ptm/m/n/10 ^^PPCR_Parasite_Prevalence^^Q, ^^PPfHRP2_Prevalence^^Q, ^^PPop-u -la-tion^^Q, ^^PPreva- Underfull \hbox (badness 10000) in paragraph at lines 3349--3357 \T1/ptm/m/n/10 lence^^Q, ^^PRain-fall^^Q, ^^PRel-a-tive_Humidity^^Q, ^^PTrue_Pr evalence^^Q De-faults: [56] Underfull \hbox (badness 10000) in paragraph at lines 3370--3370 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3370--3370 \T1/ptm/m/it/10 start_day: [][]int[][] = Underfull \hbox (badness 10000) in paragraph at lines 3370--3370 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 du-ra-tion_days: Underfull \hbox (badness 10000) in paragraph at lines 3370--3370 [][]\T1/ptm/m/it/10 int[][] = 365000\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3370--3370 \T1/ptm/m/it/10 event_trigger_list: Underfull \hbox (badness 6893) in paragraph at lines 3370--3370 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 nodes: Underfull \hbox (badness 10000) in paragraph at lines 3370--3370 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 3370--3370 \T1/ptm/m/it/10 port_description: Underfull \hbox (badness 10000) in paragraph at lines 3391--3391 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 end_day: Underfull \hbox (badness 10000) in paragraph at lines 3391--3391 [][]\T1/ptm/m/it/10 int[][] = 365000\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in- Underfull \hbox (badness 10000) in paragraph at lines 3391--3391 \T1/ptm/m/it/10 clude_infection_table: Underfull \hbox (badness 10000) in paragraph at lines 3391--3391 [][]\T1/ptm/m/it/10 int[][] = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in- [57] Underfull \hbox (badness 10000) in paragraph at lines 3453--3453 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3453--3453 \T1/ptm/m/it/10 ing_interval: Underfull \hbox (badness 10000) in paragraph at lines 3453--3453 [][]\T1/ptm/m/it/10 int[][] = 1\T1/ptm/m/n/10 , Overfull \hbox (10.30418pt too wide) in paragraph at lines 3453--3453 \T1/ptm/m/it/10 max_number_reports: Underfull \hbox (badness 10000) in paragraph at lines 3453--3453 [][]\T1/ptm/m/it/10 int[][] = 365000\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3453--3453 \T1/ptm/m/it/10 nodes: [][]list[][] = Underfull \hbox (badness 10000) in paragraph at lines 3453--3453 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 age_bins: Underfull \hbox (badness 10000) in paragraph at lines 3453--3453 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3453--3453 \T1/ptm/m/it/10 pretty_format: Underfull \hbox (badness 10000) in paragraph at lines 3453--3453 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 3453--3453 \T1/ptm/m/it/10 port_description: Underfull \hbox (badness 10000) in paragraph at lines 3503--3503 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 7168) in paragraph at lines 3503--3503 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 du-ra-tion_days: Underfull \hbox (badness 10000) in paragraph at lines 3503--3503 [][]\T1/ptm/m/it/10 int[][] = 365000\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3503--3503 \T1/ptm/m/it/10 event_trigger_list: Underfull \hbox (badness 10000) in paragraph at lines 3503--3503 \T1/ptm/m/it/10 ing_interval: Underfull \hbox (badness 10000) in paragraph at lines 3503--3503 [][]\T1/ptm/m/it/10 float[][] = 1\T1/ptm/m/n/10 , Overfull \hbox (10.30418pt too wide) in paragraph at lines 3503--3503 \T1/ptm/m/it/10 max_number_reports: Underfull \hbox (badness 10000) in paragraph at lines 3503--3503 [][]\T1/ptm/m/it/10 int[][] = 365000\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3503--3503 \T1/ptm/m/it/10 nodes: [][]list[][] = Underfull \hbox (badness 10000) in paragraph at lines 3503--3503 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in-di-vid- Overfull \hbox (20.78384pt too wide) in paragraph at lines 3503--3503 \T1/ptm/m/it/10 ual_property_to_collect: Underfull \hbox (badness 10000) in paragraph at lines 3503--3503 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3503--3503 \T1/ptm/m/it/10 pretty_format: Underfull \hbox (badness 10000) in paragraph at lines 3503--3503 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 3503--3503 \T1/ptm/m/it/10 port_description: [58] [59] Underfull \hbox (badness 10000) in paragraph at lines 3608--3608 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3608--3608 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in-di-vid- Overfull \hbox (26.78384pt too wide) in paragraph at lines 3608--3608 \T1/ptm/m/it/10 ual_property_to_collect: Underfull \hbox (badness 6526) in paragraph at lines 3608--3608 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , \T1/ptm/m/it/ 10 strat- Underfull \hbox (badness 10000) in paragraph at lines 3608--3608 \T1/ptm/m/it/10 ify_by_gender: Underfull \hbox (badness 10000) in paragraph at lines 3642--3642 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3642--3642 \T1/ptm/m/it/10 man- Underfull \hbox (badness 10000) in paragraph at lines 3642--3642 \T1/ptm/m/it/10 i-fest\T1/ptm/m/n/10 , Overfull \hbox (14.48471pt too wide) in paragraph at lines 3642--3642 \T1/ptm/m/it/10 age_bins: Underfull \hbox (badness 10000) in paragraph at lines 3642--3642 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3642--3642 \T1/ptm/m/it/10 in-di- Underfull \hbox (badness 10000) in paragraph at lines 3642--3642 \T1/ptm/m/it/10 vid- Overfull \hbox (74.78384pt too wide) in paragraph at lines 3642--3642 \T1/ptm/m/it/10 ual_property_to_collect: Underfull \hbox (badness 10000) in paragraph at lines 3642--3642 [][]\T1/ptm/m/it/10 str[][] Underfull \hbox (badness 10000) in paragraph at lines 3642--3642 \T1/ptm/m/it/10 = \TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3642--3642 \T1/ptm/m/it/10 strat- Overfull \hbox (35.68442pt too wide) in paragraph at lines 3642--3642 \T1/ptm/m/it/10 ify_by_gender: [60] Overfull \hbox (47.85474pt too wide) in paragraph at lines 3676--3676 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , Overfull \hbox (49.79494pt too wide) in paragraph at lines 3676--3676 \T1/ptm/m/it/10 man- Overfull \hbox (35.35486pt too wide) in paragraph at lines 3676--3676 \T1/ptm/m/it/10 i- Overfull \hbox (45.63463pt too wide) in paragraph at lines 3676--3676 \T1/ptm/m/it/10 fest\T1/ptm/m/n/10 , Overfull \hbox (46.26491pt too wide) in paragraph at lines 3676--3676 \T1/ptm/m/it/10 bar- Overfull \hbox (55.34474pt too wide) in paragraph at lines 3676--3676 \T1/ptm/m/it/10 codes: Overfull \hbox (41.47458pt too wide) in paragraph at lines 3676--3676 [][]\T1/ptm/m/it/10 list[][] Overfull \hbox (35.99501pt too wide) in paragraph at lines 3676--3676 \T1/ptm/m/it/10 = Overfull \hbox (52.85487pt too wide) in paragraph at lines 3676--3676 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (122.7736pt too wide) in paragraph at lines 3676--3676 \T1/ptm/m/it/10 drug_resistant_strings: Overfull \hbox (41.47458pt too wide) in paragraph at lines 3676--3676 [][]\T1/ptm/m/it/10 list[][] Overfull \hbox (35.99501pt too wide) in paragraph at lines 3676--3676 \T1/ptm/m/it/10 = Overfull \hbox (52.85487pt too wide) in paragraph at lines 3676--3676 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (148.3231pt too wide) in paragraph at lines 3676--3676 \T1/ptm/m/it/10 drug_resistant_statistic_type: Overfull \hbox (39.80469pt too wide) in paragraph at lines 3676--3676 [][]\T1/ptm/m/it/10 str[][] Overfull \hbox (35.99501pt too wide) in paragraph at lines 3676--3676 \T1/ptm/m/it/10 = Overfull \hbox (240.52356pt too wide) in paragraph at lines 3676--3676 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 NUM_PEOPLE_WITH_RESISTANT_INFECTION\TS1/ptm/m /it/10 '\T1/ptm/m/n/10 , Overfull \hbox (68.48471pt too wide) in paragraph at lines 3676--3676 \T1/ptm/m/it/10 age_bins: Overfull \hbox (41.47458pt too wide) in paragraph at lines 3676--3676 [][]\T1/ptm/m/it/10 list[][] Overfull \hbox (35.99501pt too wide) in paragraph at lines 3676--3676 \T1/ptm/m/it/10 = Overfull \hbox (52.85487pt too wide) in paragraph at lines 3676--3676 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (40.35486pt too wide) in paragraph at lines 3676--3676 \T1/ptm/m/it/10 in- Overfull \hbox (40.35486pt too wide) in paragraph at lines 3676--3676 \T1/ptm/m/it/10 di- Overfull \hbox (44.7948pt too wide) in paragraph at lines 3676--3676 \T1/ptm/m/it/10 vid- Overfull \hbox (128.78384pt too wide) in paragraph at lines 3676--3676 \T1/ptm/m/it/10 ual_property_to_collect: Overfull \hbox (39.80469pt too wide) in paragraph at lines 3676--3676 [][]\T1/ptm/m/it/10 str[][] Overfull \hbox (35.99501pt too wide) in paragraph at lines 3676--3676 \T1/ptm/m/it/10 = Overfull \hbox (36.0248pt too wide) in paragraph at lines 3676--3676 \TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , Overfull \hbox (50.76463pt too wide) in paragraph at lines 3676--3676 \T1/ptm/m/it/10 strat- Overfull \hbox (89.68442pt too wide) in paragraph at lines 3676--3676 \T1/ptm/m/it/10 ify_by_gender: Overfull \hbox (39.8048pt too wide) in paragraph at lines 3676--3676 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (35.99501pt too wide) in paragraph at lines 3676--3676 \T1/ptm/m/it/10 = Overfull \hbox (40.24501pt too wide) in paragraph at lines 3676--3676 \T1/ptm/m/it/10 1\T1/pcr/m/n/10 ) [61] Underfull \hbox (badness 10000) in paragraph at lines 3727--3727 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Overfull \hbox (17.85474pt too wide) in paragraph at lines 3756--3756 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , Overfull \hbox (19.79494pt too wide) in paragraph at lines 3756--3756 \T1/ptm/m/it/10 man- Overfull \hbox (5.35486pt too wide) in paragraph at lines 3756--3756 \T1/ptm/m/it/10 i- Overfull \hbox (15.63463pt too wide) in paragraph at lines 3756--3756 \T1/ptm/m/it/10 fest\T1/ptm/m/n/10 , Overfull \hbox (48.68404pt too wide) in paragraph at lines 3756--3756 \T1/ptm/m/it/10 species_list: Overfull \hbox (11.47458pt too wide) in paragraph at lines 3756--3756 [][]\T1/ptm/m/it/10 list[][] Overfull \hbox (5.99501pt too wide) in paragraph at lines 3756--3756 \T1/ptm/m/it/10 = Overfull \hbox (22.85487pt too wide) in paragraph at lines 3756--3756 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (20.76463pt too wide) in paragraph at lines 3756--3756 \T1/ptm/m/it/10 strat- Overfull \hbox (60.89413pt too wide) in paragraph at lines 3756--3756 \T1/ptm/m/it/10 ify_by_species: Overfull \hbox (9.8048pt too wide) in paragraph at lines 3756--3756 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (5.99501pt too wide) in paragraph at lines 3756--3756 \T1/ptm/m/it/10 = Overfull \hbox (6.74501pt too wide) in paragraph at lines 3756--3756 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , Overfull \hbox (10.35486pt too wide) in paragraph at lines 3756--3756 \T1/ptm/m/it/10 in- Overfull \hbox (70.75449pt too wide) in paragraph at lines 3756--3756 \T1/ptm/m/it/10 clude_wolbachia: Overfull \hbox (9.8048pt too wide) in paragraph at lines 3756--3756 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (5.99501pt too wide) in paragraph at lines 3756--3756 \T1/ptm/m/it/10 = Overfull \hbox (6.74501pt too wide) in paragraph at lines 3756--3756 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , Overfull \hbox (10.35486pt too wide) in paragraph at lines 3756--3756 \T1/ptm/m/it/10 in- Overfull \hbox (65.80426pt too wide) in paragraph at lines 3756--3756 \T1/ptm/m/it/10 clude_gestation: Overfull \hbox (9.8048pt too wide) in paragraph at lines 3756--3756 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (5.99501pt too wide) in paragraph at lines 3756--3756 \T1/ptm/m/it/10 = Overfull \hbox (6.74501pt too wide) in paragraph at lines 3756--3756 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , Overfull \hbox (16.26491pt too wide) in paragraph at lines 3756--3756 \T1/ptm/m/it/10 bar- Overfull \hbox (25.34474pt too wide) in paragraph at lines 3756--3756 \T1/ptm/m/it/10 codes: Overfull \hbox (11.47458pt too wide) in paragraph at lines 3756--3756 [][]\T1/ptm/m/it/10 list[][] Overfull \hbox (5.99501pt too wide) in paragraph at lines 3756--3756 \T1/ptm/m/it/10 = Overfull \hbox (26.35487pt too wide) in paragraph at lines 3756--3756 \T1/ptm/m/it/10 None\T1/pcr/m/n/10 ) [62] Underfull \hbox (badness 10000) in paragraph at lines 3796--3796 \T1/ptm/m/it/10 only_include_events_in_list: Underfull \hbox (badness 8189) in paragraph at lines 3796--3796 [][]\T1/ptm/m/it/10 bool[][] = True\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ips_to_reco rd: Underfull \hbox (badness 10000) in paragraph at lines 3796--3796 \T1/ptm/m/it/10 node_ids: [][]list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3796--3796 \T1/ptm/m/it/10 min_age_years: [][]float[][] = 0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3796--3796 \TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , \T1/ptm/m/it/10 must_have_intervention: Underfull \hbox (badness 10000) in paragraph at lines 3796--3796 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , \T1/ptm/m/it/ 10 prop- Underfull \hbox (badness 10000) in paragraph at lines 3796--3796 \T1/ptm/m/it/10 erty_change_ip_to_record: [63] Underfull \hbox (badness 10000) in paragraph at lines 3853--3853 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3853--3853 \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3853--3853 \T1/ptm/m/it/10 start_day: Underfull \hbox (badness 10000) in paragraph at lines 3853--3853 \T1/ptm/m/it/10 ra-tion_days: Underfull \hbox (badness 10000) in paragraph at lines 3853--3853 [][]\T1/ptm/m/it/10 int[][] = Underfull \hbox (badness 10000) in paragraph at lines 3853--3853 \T1/ptm/m/it/10 36500000\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3853--3853 \T1/ptm/m/it/10 re- Overfull \hbox (15.2441pt too wide) in paragraph at lines 3853--3853 \T1/ptm/m/it/10 port_description: Underfull \hbox (badness 10000) in paragraph at lines 3853--3853 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , [64] Underfull \hbox (badness 10000) in paragraph at lines 3888--3888 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pa-ram-e-ters: Underfull \hbox (badness 10000) in paragraph at lines 3888--3888 \T1/ptm/m/it/10 dict = \T1/ptm/m/n/10 , Underfull \hbox (badness 6348) in paragraph at lines 3888--3888 \T1/ptm/m/it/10 En-abled: bool = Underfull \hbox (badness 10000) in paragraph at lines 3936--3936 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pa-ram-e-ters: Underfull \hbox (badness 10000) in paragraph at lines 3936--3936 \T1/ptm/m/it/10 dict = \T1/ptm/m/n/10 , Underfull \hbox (badness 6348) in paragraph at lines 3936--3936 \T1/ptm/m/it/10 En-abled: bool = Underfull \hbox (badness 10000) in paragraph at lines 3960--3960 []\T1/ptm/m/it/10 class_name: Underfull \hbox (badness 10000) in paragraph at lines 3960--3960 \T1/ptm/m/it/10 = \T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3960--3960 \T1/ptm/m/it/10 En-abled: Overfull \hbox (0.5943pt too wide) in paragraph at lines 3960--3960 \T1/ptm/m/it/10 Pretty_Format: [65] Overfull \hbox (55.2345pt too wide) in paragraph at lines 3985--3985 []\T1/ptm/m/it/10 class_name: Overfull \hbox (15.80469pt too wide) in paragraph at lines 3985--3985 \T1/ptm/m/it/10 str Overfull \hbox (11.99501pt too wide) in paragraph at lines 3985--3985 \T1/ptm/m/it/10 = Overfull \hbox (28.85487pt too wide) in paragraph at lines 3985--3985 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (18.57497pt too wide) in paragraph at lines 3985--3985 \T1/ptm/m/it/10 pa- Overfull \hbox (24.53493pt too wide) in paragraph at lines 3985--3985 \T1/ptm/m/it/10 ram- Overfull \hbox (13.01491pt too wide) in paragraph at lines 3985--3985 \T1/ptm/m/it/10 e- Overfull \hbox (23.4746pt too wide) in paragraph at lines 3985--3985 \T1/ptm/m/it/10 ters: Overfull \hbox (20.24474pt too wide) in paragraph at lines 3985--3985 \T1/ptm/m/it/10 dict Overfull \hbox (11.99501pt too wide) in paragraph at lines 3985--3985 \T1/ptm/m/it/10 = Overfull \hbox (27.5448pt too wide) in paragraph at lines 3985--3985 \T1/ptm/m/it/10 \T1/ptm/m/n/10 , Overfull \hbox (19.68495pt too wide) in paragraph at lines 3985--3985 \T1/ptm/m/it/10 En- Overfull \hbox (30.7948pt too wide) in paragraph at lines 3985--3985 \T1/ptm/m/it/10 abled: Overfull \hbox (23.0249pt too wide) in paragraph at lines 3985--3985 \T1/ptm/m/it/10 bool Overfull \hbox (11.99501pt too wide) in paragraph at lines 3985--3985 \T1/ptm/m/it/10 = Overfull \hbox (26.08485pt too wide) in paragraph at lines 3985--3985 \T1/ptm/m/it/10 True\T1/ptm/m/n/10 , Overfull \hbox (66.5943pt too wide) in paragraph at lines 3985--3985 \T1/ptm/m/it/10 Pretty_Format: Overfull \hbox (23.0249pt too wide) in paragraph at lines 3985--3985 \T1/ptm/m/it/10 bool Overfull \hbox (11.99501pt too wide) in paragraph at lines 3985--3985 \T1/ptm/m/it/10 = Overfull \hbox (29.58485pt too wide) in paragraph at lines 3985--3985 \T1/ptm/m/it/10 True\T1/pcr/m/n/10 ) Underfull \hbox (badness 5832) in paragraph at lines 3988--3993 \T1/ptm/m/n/10 The re-port can only be used when the sim-u-la-tion setup pa-ram -e-ter \T1/ptm/b/n/10 Malaria_Model \T1/ptm/m/n/10 is set to Underfull \hbox (badness 10000) in paragraph at lines 4010--4010 []\T1/ptm/m/it/10 class_name: str Underfull \hbox (badness 7291) in paragraph at lines 4010--4010 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pa-ram- Underfull \hbox (badness 10000) in paragraph at lines 4010--4010 \T1/ptm/m/it/10 e-ters: dict = Underfull \hbox (badness 10000) in paragraph at lines 4010--4010 \T1/ptm/m/it/10 \T1/ptm/m/n/10 , \T1/ptm/m/it/10 En- Underfull \hbox (badness 10000) in paragraph at lines 4010--4010 \T1/ptm/m/it/10 Pretty_Format: [66] Overfull \hbox (13.2345pt too wide) in paragraph at lines 4034--4034 []\T1/ptm/m/it/10 class_name: Underfull \hbox (badness 10000) in paragraph at lines 4034--4034 \T1/ptm/m/it/10 str = Underfull \hbox (badness 10000) in paragraph at lines 4034--4034 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4034--4034 \T1/ptm/m/it/10 pa-ram-e- Underfull \hbox (badness 10000) in paragraph at lines 4034--4034 \T1/ptm/m/it/10 tory>\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4034--4034 \T1/ptm/m/it/10 En-abled: Underfull \hbox (badness 10000) in paragraph at lines 4034--4034 \T1/ptm/m/it/10 bool Underfull \hbox (badness 10000) in paragraph at lines 4034--4034 \T1/ptm/m/it/10 = True\T1/ptm/m/n/10 , Overfull \hbox (24.5943pt too wide) in paragraph at lines 4034--4034 \T1/ptm/m/it/10 Pretty_Format: Underfull \hbox (badness 10000) in paragraph at lines 4034--4034 \T1/ptm/m/it/10 bool = Underfull \hbox (badness 10000) in paragraph at lines 4059--4059 []\T1/ptm/m/it/10 class_name: str = Underfull \hbox (badness 10000) in paragraph at lines 4059--4059 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pa-ram-e-ters: [67] Underfull \hbox (badness 6236) in paragraph at lines 4107--4107 []\T1/ptm/m/it/10 class_name: str = Underfull \hbox (badness 10000) in paragraph at lines 4107--4107 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pa-ram-e-ters: Underfull \hbox (badness 10000) in paragraph at lines 4107--4107 \T1/ptm/m/it/10 dict = \T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4131--4131 []\T1/ptm/m/it/10 class_name: str Underfull \hbox (badness 7291) in paragraph at lines 4131--4131 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pa-ram- Underfull \hbox (badness 10000) in paragraph at lines 4131--4131 \T1/ptm/m/it/10 e-ters: dict = Underfull \hbox (badness 10000) in paragraph at lines 4131--4131 \T1/ptm/m/it/10 \T1/ptm/m/n/10 , \T1/ptm/m/it/10 En- Underfull \hbox (badness 10000) in paragraph at lines 4131--4131 \T1/ptm/m/it/10 Pretty_Format: Underfull \hbox (badness 10000) in paragraph at lines 4160--4160 []\T1/ptm/m/it/10 class_name: Underfull \hbox (badness 10000) in paragraph at lines 4160--4160 \T1/ptm/m/it/10 pa-ram-e- Underfull \hbox (badness 10000) in paragraph at lines 4160--4160 \T1/ptm/m/it/10 \T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4160--4160 \T1/ptm/m/it/10 En-abled: Overfull \hbox (6.5943pt too wide) in paragraph at lines 4160--4160 \T1/ptm/m/it/10 Pretty_Format: [68] Overfull \hbox (13.2345pt too wide) in paragraph at lines 4204--4204 []\T1/ptm/m/it/10 class_name: Underfull \hbox (badness 10000) in paragraph at lines 4204--4204 \T1/ptm/m/it/10 str = Underfull \hbox (badness 10000) in paragraph at lines 4204--4204 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4204--4204 \T1/ptm/m/it/10 pa-ram-e- Underfull \hbox (badness 10000) in paragraph at lines 4204--4204 \T1/ptm/m/it/10 tory>\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4204--4204 \T1/ptm/m/it/10 En-abled: Underfull \hbox (badness 10000) in paragraph at lines 4204--4204 \T1/ptm/m/it/10 bool Underfull \hbox (badness 10000) in paragraph at lines 4204--4204 \T1/ptm/m/it/10 = True\T1/ptm/m/n/10 , Overfull \hbox (24.5943pt too wide) in paragraph at lines 4204--4204 \T1/ptm/m/it/10 Pretty_Format: Underfull \hbox (badness 10000) in paragraph at lines 4204--4204 \T1/ptm/m/it/10 bool = Underfull \hbox (badness 10000) in paragraph at lines 4228--4228 []\T1/ptm/m/it/10 class_name: Underfull \hbox (badness 10000) in paragraph at lines 4228--4228 \T1/ptm/m/it/10 str = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4228--4228 \T1/ptm/m/it/10 pa-ram-e-ters: Underfull \hbox (badness 10000) in paragraph at lines 4228--4228 \T1/ptm/m/it/10 dict = \T1/ptm/m/n/10 , \T1/ptm/m/it/10 En-abled: Underfull \hbox (badness 10000) in paragraph at lines 4228--4228 \T1/ptm/m/it/10 bool = True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4228--4228 \T1/ptm/m/it/10 Pretty_Format: Overfull \hbox (19.2345pt too wide) in paragraph at lines 4251--4251 []\T1/ptm/m/it/10 class_name: Underfull \hbox (badness 10000) in paragraph at lines 4251--4251 \T1/ptm/m/it/10 str = Underfull \hbox (badness 10000) in paragraph at lines 4251--4251 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4251--4251 \T1/ptm/m/it/10 pa-ram- Underfull \hbox (badness 10000) in paragraph at lines 4251--4251 \T1/ptm/m/it/10 e-ters: Underfull \hbox (badness 8151) in paragraph at lines 4251--4251 \T1/ptm/m/it/10 dict = Underfull \hbox (badness 10000) in paragraph at lines 4251--4251 \T1/ptm/m/it/10 \T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4251--4251 \T1/ptm/m/it/10 En- Underfull \hbox (badness 10000) in paragraph at lines 4251--4251 \T1/ptm/m/it/10 abled: Underfull \hbox (badness 10000) in paragraph at lines 4251--4251 \T1/ptm/m/it/10 True\T1/ptm/m/n/10 , Overfull \hbox (30.5943pt too wide) in paragraph at lines 4251--4251 \T1/ptm/m/it/10 Pretty_Format: [69] Overfull \hbox (67.2345pt too wide) in paragraph at lines 4279--4279 []\T1/ptm/m/it/10 class_name: Overfull \hbox (27.80469pt too wide) in paragraph at lines 4279--4279 \T1/ptm/m/it/10 str Overfull \hbox (23.99501pt too wide) in paragraph at lines 4279--4279 \T1/ptm/m/it/10 = Overfull \hbox (40.85487pt too wide) in paragraph at lines 4279--4279 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (30.57497pt too wide) in paragraph at lines 4279--4279 \T1/ptm/m/it/10 pa- Overfull \hbox (36.53493pt too wide) in paragraph at lines 4279--4279 \T1/ptm/m/it/10 ram- Overfull \hbox (25.01491pt too wide) in paragraph at lines 4279--4279 \T1/ptm/m/it/10 e- Overfull \hbox (35.4746pt too wide) in paragraph at lines 4279--4279 \T1/ptm/m/it/10 ters: Overfull \hbox (32.24474pt too wide) in paragraph at lines 4279--4279 \T1/ptm/m/it/10 dict Overfull \hbox (23.99501pt too wide) in paragraph at lines 4279--4279 \T1/ptm/m/it/10 = Overfull \hbox (39.5448pt too wide) in paragraph at lines 4279--4279 \T1/ptm/m/it/10 \T1/ptm/m/n/10 , Overfull \hbox (31.68495pt too wide) in paragraph at lines 4279--4279 \T1/ptm/m/it/10 En- Overfull \hbox (42.7948pt too wide) in paragraph at lines 4279--4279 \T1/ptm/m/it/10 abled: Overfull \hbox (35.0249pt too wide) in paragraph at lines 4279--4279 \T1/ptm/m/it/10 bool Overfull \hbox (23.99501pt too wide) in paragraph at lines 4279--4279 \T1/ptm/m/it/10 = Overfull \hbox (38.08485pt too wide) in paragraph at lines 4279--4279 \T1/ptm/m/it/10 True\T1/ptm/m/n/10 , Overfull \hbox (78.5943pt too wide) in paragraph at lines 4279--4279 \T1/ptm/m/it/10 Pretty_Format: Overfull \hbox (35.0249pt too wide) in paragraph at lines 4279--4279 \T1/ptm/m/it/10 bool Overfull \hbox (23.99501pt too wide) in paragraph at lines 4279--4279 \T1/ptm/m/it/10 = Overfull \hbox (41.58485pt too wide) in paragraph at lines 4279--4279 \T1/ptm/m/it/10 True\T1/pcr/m/n/10 ) [70] Underfull \hbox (badness 10000) in paragraph at lines 4307--4307 []\T1/ptm/m/it/10 class_name: str Underfull \hbox (badness 7291) in paragraph at lines 4307--4307 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pa-ram- Underfull \hbox (badness 10000) in paragraph at lines 4307--4307 \T1/ptm/m/it/10 e-ters: dict = Underfull \hbox (badness 10000) in paragraph at lines 4307--4307 \T1/ptm/m/it/10 \T1/ptm/m/n/10 , \T1/ptm/m/it/10 En- Underfull \hbox (badness 10000) in paragraph at lines 4307--4307 \T1/ptm/m/it/10 Pretty_Format: Overfull \hbox (37.2345pt too wide) in paragraph at lines 4331--4331 []\T1/ptm/m/it/10 class_name: Underfull \hbox (badness 10000) in paragraph at lines 4331--4331 \T1/ptm/m/it/10 str Underfull \hbox (badness 10000) in paragraph at lines 4331--4331 \T1/ptm/m/it/10 = Overfull \hbox (10.85487pt too wide) in paragraph at lines 4331--4331 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (0.57497pt too wide) in paragraph at lines 4331--4331 \T1/ptm/m/it/10 pa- Overfull \hbox (6.53493pt too wide) in paragraph at lines 4331--4331 \T1/ptm/m/it/10 ram- Underfull \hbox (badness 10000) in paragraph at lines 4331--4331 \T1/ptm/m/it/10 e- Overfull \hbox (5.4746pt too wide) in paragraph at lines 4331--4331 \T1/ptm/m/it/10 ters: Overfull \hbox (2.24474pt too wide) in paragraph at lines 4331--4331 \T1/ptm/m/it/10 dict Underfull \hbox (badness 10000) in paragraph at lines 4331--4331 \T1/ptm/m/it/10 = Overfull \hbox (9.5448pt too wide) in paragraph at lines 4331--4331 \T1/ptm/m/it/10 \T1/ptm/m/n/10 , Overfull \hbox (1.68495pt too wide) in paragraph at lines 4331--4331 \T1/ptm/m/it/10 En- Overfull \hbox (12.7948pt too 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En-abled: Overfull \hbox (0.5943pt too wide) in paragraph at lines 4356--4356 \T1/ptm/m/it/10 Pretty_Format: [71] Underfull \hbox (badness 10000) in paragraph at lines 4413--4413 []\T1/ptm/m/it/10 config\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/ 10 , Overfull \hbox (24.52415pt too wide) in paragraph at lines 4413--4413 \T1/ptm/m/it/10 var_gene_randomness_type: Underfull \hbox (badness 10000) in paragraph at lines 4413--4413 [][]\T1/ptm/m/it/10 str[][] = Underfull \hbox (badness 10000) in paragraph at lines 4414--4416 \T1/ptm/m/n/10 Sets up the de-fault pa-ram-e-ters for par-a-site ge-net-ics sim -u-la-tions Malaria_Model = [72] [73] Underfull \hbox (badness 10000) in paragraph at lines 4554--4554 []\T1/ptm/m/it/10 config\T1/ptm/m/n/10 , \T1/ptm/m/it/10 species_name: Underfull \hbox (badness 10000) in paragraph at lines 4554--4554 [][]\T1/ptm/m/it/10 str[][]\T1/ptm/m/n/10 , \T1/ptm/m/it/10 habi-tat_type: [][] str[][]\T1/ptm/m/n/10 , Underfull \hbox (badness 7631) in paragraph at lines 4555--4558 \T1/ptm/m/n/10 Set the Max_Larval_Capacity for a given species and habi-tat. Ef -fec-tively do-ing some-thing [74] [75] [76] Underfull \hbox (badness 10000) in paragraph at lines 4892--4892 []\T1/ptm/m/it/10 config\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/ 10 , \T1/ptm/m/it/10 in-sec- Underfull \hbox (badness 6675) in paragraph at lines 4892--4892 \T1/ptm/m/it/10 ti-cide_name: [][]str[][] = \TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , Underfull \hbox (badness 5939) in paragraph at lines 4892--4892 \T1/ptm/m/it/10 species: [][]str[][] = \TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , \T1/ ptm/m/it/10 al- Underfull \hbox (badness 6047) in paragraph at lines 4892--4892 \T1/ptm/m/it/10 block-ing: [][]float[][] = 1.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4892--4892 \T1/ptm/m/it/10 pelling: [][]float[][] = 1.0\T1/ptm/m/n/10 , [77] Underfull \hbox (badness 10000) in paragraph at lines 4962--4962 \T1/ptm/m/it/10 driver_type: [][]str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 CL AS-SIC\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4962--4962 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 shred-ding_allele_required : Underfull \hbox (badness 10000) in paragraph at lines 4962--4962 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 al-lele_shredding_fraction : Underfull \hbox (badness 10000) in paragraph at lines 4962--4962 [][]\T1/ptm/m/it/10 float[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 al- Underfull \hbox (badness 10000) in paragraph at lines 4962--4962 \T1/ptm/m/it/10 lele_to_shred_to_surviving_fraction: [78] [79] Underfull \hbox (badness 10000) in paragraph at lines 5095--5095 []\T1/ptm/m/it/10 config\T1/ptm/m/n/10 , \T1/ptm/m/it/10 species_name\T1/ptm/m/ n/10 , Underfull \hbox (badness 10000) in paragraph at lines 5095--5095 \T1/ptm/m/it/10 habi-tat_type\T1/ptm/m/n/10 , Underfull \hbox (badness 7631) in paragraph at lines 5096--5099 \T1/ptm/m/n/10 Set the Max_Larval_Capacity for a given species and habi-tat. Ef -fec-tively do-ing some-thing [80] Chapter 3. [81] [82] [83] Overfull \hbox (18.03041pt too wide) in paragraph at lines 5301--5302 \T1/ptm/m/n/10 You need to spec-ify `^^Uindex-url = [][]$https : /$[][]/@idmod.org:@packages.idmod.org/api/pypi/pypi- [84] [85] [86] [87] [88] [89] [90] Overfull \hbox (54.6225pt too wide) in paragraph at lines 5604--5605 []\T1/pcr/m/n/10 emodpy_malaria.demographics.MalariaDemographics\T1/ptm/m/n/10 , Overfull \hbox (84.6225pt too wide) in paragraph at lines 5608--5609 []\T1/pcr/m/n/10 emodpy_malaria.interventions.community_health_worker\T1/ptm/m/ n/10 , Overfull \hbox (12.6225pt too wide) in paragraph at lines 5609--5610 []\T1/pcr/m/n/10 emodpy_malaria.interventions.diag_survey\T1/ptm/m/n/10 , Overfull \hbox (24.6225pt too wide) in paragraph at lines 5611--5612 []\T1/pcr/m/n/10 emodpy_malaria.interventions.drug_campaign\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 5612--5613 []\T1/pcr/m/n/10 emodpy_malaria.interventions.inputeir\T1/ptm/m/n/10 , Overfull \hbox (6.6225pt too wide) in paragraph at lines 5614--5615 []\T1/pcr/m/n/10 emodpy_malaria.interventions.ivermectin\T1/ptm/m/n/10 , Overfull \hbox (0.6225pt too wide) in paragraph at lines 5615--5616 []\T1/pcr/m/n/10 emodpy_malaria.interventions.larvicide\T1/ptm/m/n/10 , Overfull \hbox (36.6225pt too wide) in paragraph at lines 5616--5617 []\T1/pcr/m/n/10 emodpy_malaria.interventions.mosquitorelease\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 5617--5618 []\T1/pcr/m/n/10 emodpy_malaria.interventions.outbreak\T1/ptm/m/n/10 , Overfull \hbox (36.6225pt too wide) in paragraph at lines 5618--5619 []\T1/pcr/m/n/10 emodpy_malaria.interventions.outdoorrestkill\T1/ptm/m/n/10 , Overfull \hbox (72.6225pt too wide) in paragraph at lines 5619--5620 []\T1/pcr/m/n/10 emodpy_malaria.interventions.scale_larval_habitats\T1/ptm/m/n/ 10 , Overfull \hbox (24.6225pt too wide) in paragraph at lines 5620--5621 []\T1/pcr/m/n/10 emodpy_malaria.interventions.spacespraying\T1/ptm/m/n/10 , Overfull \hbox (0.6225pt too wide) in paragraph at lines 5621--5622 []\T1/pcr/m/n/10 emodpy_malaria.interventions.sugartrap\T1/ptm/m/n/10 , Overfull \hbox (48.6225pt too wide) in paragraph at lines 5622--5623 []\T1/pcr/m/n/10 emodpy_malaria.interventions.treatment_seeking\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 5623--5624 []\T1/pcr/m/n/10 emodpy_malaria.interventions.udbednet\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 5624--5625 []\T1/pcr/m/n/10 emodpy_malaria.interventions.vaccine\T1/ptm/m/n/10 , Overfull \hbox (36.6225pt too wide) in paragraph at lines 5626--5627 []\T1/pcr/m/n/10 emodpy_malaria.malaria_vector_species_params\T1/ptm/m/n/10 , [91] (./institute-for-disease-modeling-emodpy-malaria.ind [92] Underfull \hbox (badness 10000) in paragraph at lines 8--10 []\T1/pcr/m/n/10 add_campaign_event() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 8--10 \T1/ptm/m/it/10 emodpy_malaria.interventions.outbreak\T1/ptm/m/n/10 ), Overfull \hbox (48.28003pt too wide) in paragraph at lines 10--12 \T1/ptm/m/it/10 emodpy_malaria.interventions.community_health_worker\T1/ptm/m/n /10 ), Underfull \hbox (badness 10000) in paragraph at lines 12--14 []\T1/pcr/m/n/10 add_diagnostic_survey() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod -ule Underfull \hbox (badness 10000) in paragraph at lines 12--14 \T1/ptm/m/it/10 emodpy_malaria.interventions.diag_survey\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 14--16 []\T1/pcr/m/n/10 add_drug_campaign() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (4.27083pt too wide) in paragraph at lines 14--16 \T1/ptm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 16--18 []\T1/pcr/m/n/10 add_drug_resistance() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 18--20 []\T1/pcr/m/n/10 add_drug_status_report() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 20--22 []\T1/pcr/m/n/10 add_event_recorder() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 22--24 []\T1/pcr/m/n/10 add_fMDA() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (4.27083pt too wide) in paragraph at lines 22--24 \T1/ptm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 24--26 []\T1/pcr/m/n/10 add_genes_and_alleles() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod -ule Overfull \hbox (27.60999pt too wide) in paragraph at lines 26--28 \T1/ptm/m/it/10 emodpy_malaria.interventions.scale_larval_habitats\T1/ptm/m/n/1 0 ), Underfull \hbox (badness 10000) in paragraph at lines 30--32 []\T1/pcr/m/n/10 add_initial_vector_species() Overfull \hbox (127.95007pt too wide) in paragraph at lines 30--32 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.demographics.MalariaDemographics .MalariaDemographics Underfull \hbox (badness 10000) in paragraph at lines 32--34 []\T1/pcr/m/n/10 add_initial_vector_species_from_csv() Overfull \hbox (127.95007pt too wide) in paragraph at lines 32--34 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.demographics.MalariaDemographics .MalariaDemographics Underfull \hbox (badness 10000) in paragraph at lines 34--36 []\T1/pcr/m/n/10 add_InputEIR() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 34--36 \T1/ptm/m/it/10 emodpy_malaria.interventions.inputeir\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 36--38 []\T1/pcr/m/n/10 add_insecticide_resistance() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 i n mod-ule Underfull \hbox (badness 10000) in paragraph at lines 38--40 []\T1/pcr/m/n/10 add_insecticide_resistance() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 i n mod-ule Underfull \hbox (badness 10000) in paragraph at lines 42--44 []\T1/pcr/m/n/10 add_ITN() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 44--46 []\T1/pcr/m/n/10 add_ITN_scheduled() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 46--48 []\T1/pcr/m/n/10 add_ITN_triggered() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 48--50 []\T1/pcr/m/n/10 add_larval_habitat_multiplier() Overfull \hbox (127.95007pt too wide) in paragraph at lines 48--50 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.demographics.MalariaDemographics .MalariaDemographics Underfull \hbox (badness 10000) in paragraph at lines 50--52 []\T1/pcr/m/n/10 add_larvicide() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 50--52 \T1/ptm/m/it/10 emodpy_malaria.interventions.larvicide\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 54--56 []\T1/pcr/m/n/10 add_malaria_patient_json_report() \T1/ptm/m/n/10 (\T1/ptm/m/it /10 in Underfull \hbox (badness 10000) in paragraph at lines 56--58 []\T1/pcr/m/n/10 add_malaria_sql_report() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 58--60 []\T1/pcr/m/n/10 add_malaria_summary_report() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 i n mod-ule Underfull \hbox (badness 10000) in paragraph at lines 62--64 []\T1/pcr/m/n/10 add_malaria_transmission_report() \T1/ptm/m/n/10 (\T1/ptm/m/it /10 in Underfull \hbox (badness 10000) in paragraph at lines 64--66 []\T1/pcr/m/n/10 add_MDA() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (4.27083pt too wide) in paragraph at lines 64--66 \T1/ptm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 66--68 []\T1/pcr/m/n/10 add_MSAT() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (4.27083pt too wide) in paragraph at lines 66--68 \T1/ptm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 68--70 []\T1/pcr/m/n/10 add_mutation() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 70--72 []\T1/pcr/m/n/10 add_outbreak_individual() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in m od-ule Underfull \hbox (badness 10000) in paragraph at lines 70--72 \T1/ptm/m/it/10 emodpy_malaria.interventions.outbreak\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 72--74 \T1/ptm/m/it/10 ule emodpy_malaria.interventions.outbreak\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 74--76 \T1/ptm/m/it/10 ule emodpy_malaria.interventions.outbreak\T1/ptm/m/n/10 ), [93] Underfull \hbox (badness 10000) in paragraph at lines 76--78 []\T1/pcr/m/n/10 add_OutdoorRestKill() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 78--80 []\T1/pcr/m/n/10 add_report_event_counter() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 80--82 []\T1/pcr/m/n/10 add_report_intervention_pop_avg() \T1/ptm/m/n/10 (\T1/ptm/m/it /10 in Underfull \hbox (badness 10000) in paragraph at lines 86--88 []\T1/pcr/m/n/10 add_report_node_demographics_malaria() Overfull \hbox (52.1225pt too wide) in paragraph at lines 88--90 []\T1/pcr/m/n/10 add_report_node_demographics_malaria_genetics() Underfull \hbox (badness 10000) in paragraph at lines 90--92 []\T1/pcr/m/n/10 add_report_vector_genetics() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 i n mod-ule Underfull \hbox (badness 10000) in paragraph at lines 94--96 []\T1/pcr/m/n/10 add_report_vector_stats() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in m od-ule Overfull \hbox (22.1225pt too wide) in paragraph at lines 96--98 []\T1/pcr/m/n/10 add_report_vector_stats_malaria_genetics() Underfull \hbox (badness 10000) in paragraph at lines 98--100 []\T1/pcr/m/n/10 add_rfMDA() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (4.27083pt too wide) in paragraph at lines 98--100 \T1/ptm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 100--102 []\T1/pcr/m/n/10 add_rfMSAT() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (4.27083pt too wide) in paragraph at lines 100--102 \T1/ptm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 102--104 []\T1/pcr/m/n/10 add_scale_larval_habitats() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (27.60999pt too wide) in paragraph at lines 102--104 \T1/ptm/m/it/10 emodpy_malaria.interventions.scale_larval_habitats\T1/ptm/m/n/1 0 ), Underfull \hbox (badness 10000) in paragraph at lines 104--106 []\T1/pcr/m/n/10 add_scheduled_vaccine() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod -ule Underfull \hbox (badness 10000) in paragraph at lines 104--106 \T1/ptm/m/it/10 emodpy_malaria.interventions.vaccine\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 106--108 []\T1/pcr/m/n/10 add_spatial_report_malaria_filtered() Underfull \hbox (badness 10000) in paragraph at lines 108--110 []\T1/pcr/m/n/10 add_species() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 110--112 []\T1/pcr/m/n/10 add_species() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 112--114 []\T1/pcr/m/n/10 add_species_drivers() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 114--115 []\T1/pcr/m/n/10 add_trait() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 115--117 []\T1/pcr/m/n/10 add_treatment_seeking() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod -ule Overfull \hbox (13.89015pt too wide) in paragraph at lines 115--117 \T1/ptm/m/it/10 emodpy_malaria.interventions.treatment_seeking\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 117--119 []\T1/pcr/m/n/10 add_vector_habitat_report() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 119--121 []\T1/pcr/m/n/10 AntimalarialDrug() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 119--121 \T1/ptm/m/it/10 emodpy_malaria.interventions.common\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 121--123 []\T1/pcr/m/n/10 AntimalarialDrug() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 126--128 []\T1/pcr/m/n/10 BasicBednet() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 128--129 []\T1/pcr/m/n/10 Bednet() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 129--131 []\T1/pcr/m/n/10 BednetIntervention() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ul e Overfull \hbox (59.0599pt too wide) in paragraph at lines 134--136 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.MalariaImmunityReport Overfull \hbox (72.70978pt too wide) in paragraph at lines 136--138 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.MalariaPatientJSONReport Overfull \hbox (34.07018pt too wide) in paragraph at lines 138--140 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.MalariaSqlReport Overfull \hbox (59.06006pt too wide) in paragraph at lines 140--142 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.MalariaSummaryReport Overfull \hbox (79.58981pt too wide) in paragraph at lines 142--144 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.MalariaSurveyJSONAnalyzer Overfull \hbox (34.07019pt too wide) in paragraph at lines 144--146 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.ReportDrugStatus Overfull \hbox (44.06006pt too wide) in paragraph at lines 146--148 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.ReportEventCounter Overfull \hbox (93.57004pt too wide) in paragraph at lines 148--150 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.ReportHumanMigrationTracking Overfull \hbox (67.70004pt too wide) in paragraph at lines 150--152 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.ReportInterventionPopAvg Overfull \hbox (52.68974pt too wide) in paragraph at lines 152--154 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.ReportMalariaFiltered Overfull \hbox (68.25012pt too wide) in paragraph at lines 154--156 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.ReportNodeDemographics Overfull \hbox (101.02975pt too wide) in paragraph at lines 156--158 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.ReportNodeDemographicsMalaria Overfull \hbox (136.01923pt too wide) in paragraph at lines 158--160 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.ReportNodeDemographicsMalariaGenetics Overfull \hbox (125.03925pt too wide) in paragraph at lines 160--162 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.ReportSimpleMalariaTransmissionJSON Overfull \hbox (49.04977pt too wide) in paragraph at lines 162--164 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.ReportVectorGenetics Overfull \hbox (54.46992pt too wide) in paragraph at lines 164--166 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.ReportVectorMigration Overfull \hbox (33.50998pt too wide) in paragraph at lines 166--168 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.ReportVectorStats Overfull \hbox (101.27908pt too wide) in paragraph at lines 168--170 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.ReportVectorStatsMalariaGenetics Overfull \hbox (81.02942pt too wide) in paragraph at lines 170--172 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.SpatialReportMalariaFiltered Overfull \hbox (44.61995pt too wide) in paragraph at lines 172--174 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.VectorHabitatReport [94] Underfull \hbox (badness 10000) in paragraph at lines 177--179 []\T1/pcr/m/n/10 drug_configs_from_code() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule Overfull \hbox (4.27083pt too wide) in paragraph at lines 177--179 \T1/ptm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/ptm/m/n/10 ), Overfull \hbox (52.1225pt too wide) in paragraph at lines 186--187 []\T1/pcr/m/n/10 emodpy_malaria.demographics.MalariaDemographics Overfull \hbox (82.1225pt too wide) in paragraph at lines 194--195 []\T1/pcr/m/n/10 emodpy_malaria.interventions.community_health_worker Overfull \hbox (10.1225pt too wide) in paragraph at lines 196--197 []\T1/pcr/m/n/10 emodpy_malaria.interventions.diag_survey Overfull \hbox (22.1225pt too wide) in paragraph at lines 200--201 []\T1/pcr/m/n/10 emodpy_malaria.interventions.drug_campaign Overfull \hbox (4.1225pt too wide) in paragraph at lines 206--207 []\T1/pcr/m/n/10 emodpy_malaria.interventions.ivermectin Overfull \hbox (34.1225pt too wide) in paragraph at lines 210--211 []\T1/pcr/m/n/10 emodpy_malaria.interventions.mosquitorelease Overfull \hbox (34.1225pt too wide) in paragraph at lines 214--215 []\T1/pcr/m/n/10 emodpy_malaria.interventions.outdoorrestkill Overfull \hbox (70.1225pt too wide) in paragraph at lines 216--217 []\T1/pcr/m/n/10 emodpy_malaria.interventions.scale_larval_habitats Overfull \hbox (22.1225pt too wide) in paragraph at lines 218--219 []\T1/pcr/m/n/10 emodpy_malaria.interventions.spacespraying Overfull \hbox (46.1225pt too wide) in paragraph at lines 222--223 []\T1/pcr/m/n/10 emodpy_malaria.interventions.treatment_seeking Overfull \hbox (34.1225pt too wide) in paragraph at lines 230--231 []\T1/pcr/m/n/10 emodpy_malaria.malaria_vector_species_params Underfull \hbox (badness 10000) in paragraph at lines 241--243 []\T1/pcr/m/n/10 fmda_cfg() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (4.27083pt too wide) in paragraph at lines 241--243 \T1/ptm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 243--245 []\T1/pcr/m/n/10 from_csv() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (36.54083pt too wide) in paragraph at lines 243--245 \T1/ptm/m/it/10 emodpy_malaria.demographics.MalariaDemographics\T1/ptm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 245--247 []\T1/pcr/m/n/10 from_params() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (36.54083pt too wide) in paragraph at lines 245--247 \T1/ptm/m/it/10 emodpy_malaria.demographics.MalariaDemographics\T1/ptm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 247--249 []\T1/pcr/m/n/10 from_pop_csv() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (36.54083pt too wide) in paragraph at lines 247--249 \T1/ptm/m/it/10 emodpy_malaria.demographics.MalariaDemographics\T1/ptm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 249--251 []\T1/pcr/m/n/10 from_template_node() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ul e Overfull \hbox (36.54083pt too wide) in paragraph at lines 249--251 \T1/ptm/m/it/10 emodpy_malaria.demographics.MalariaDemographics\T1/ptm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 254--256 []\T1/pcr/m/n/10 get_drug_params() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 256--258 []\T1/pcr/m/n/10 get_file_from_http() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 258--260 []\T1/pcr/m/n/10 get_species_params() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 260--262 []\T1/pcr/m/n/10 get_species_params() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 265--267 []\T1/pcr/m/n/10 InputEIR() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 265--267 \T1/ptm/m/it/10 emodpy_malaria.interventions.inputeir\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 267--269 []\T1/pcr/m/n/10 Ivermectin() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 267--269 \T1/ptm/m/it/10 emodpy_malaria.interventions.ivermectin\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 272--274 []\T1/pcr/m/n/10 MalariaDemographics \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Overfull \hbox (36.54083pt too wide) in paragraph at lines 272--274 \T1/ptm/m/it/10 emodpy_malaria.demographics.MalariaDemographics\T1/ptm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 274--276 []\T1/pcr/m/n/10 MalariaDiagnostic() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 274--276 \T1/ptm/m/it/10 emodpy_malaria.interventions.common\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 276--278 []\T1/pcr/m/n/10 MalariaImmunityReport \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in [95] Underfull \hbox (badness 10000) in paragraph at lines 278--280 []\T1/pcr/m/n/10 MalariaPatientJSONReport \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 280--282 []\T1/pcr/m/n/10 MalariaSqlReport \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 282--284 []\T1/pcr/m/n/10 MalariaSummaryReport \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 284--286 []\T1/pcr/m/n/10 MalariaSurveyJSONAnalyzer \T1/ptm/m/n/10 (\T1/ptm/m/it/10 clas s in Overfull \hbox (74.6225pt too wide) in paragraph at lines 289--290 []| \T1/pcr/m/n/10 emodpy_malaria.demographics.MalariaDemographics\T1/ptm/m/n/1 0 , Overfull \hbox (2.6225pt too wide) in paragraph at lines 291--292 []| \T1/pcr/m/n/10 emodpy_malaria.interventions.bednet\T1/ptm/m/n/10 , Overfull \hbox (2.6225pt too wide) in paragraph at lines 292--293 []| \T1/pcr/m/n/10 emodpy_malaria.interventions.common\T1/ptm/m/n/10 , Overfull \hbox (104.6225pt too wide) in paragraph at lines 293--294 []| \T1/pcr/m/n/10 emodpy_malaria.interventions.community_health_worker\T1/ptm/ m/n/10 , Overfull \hbox (32.6225pt too wide) in paragraph at lines 294--295 []| \T1/pcr/m/n/10 emodpy_malaria.interventions.diag_survey\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 295--296 []| \T1/pcr/m/n/10 emodpy_malaria.interventions.drug\T1/ptm/m/n/10 , Overfull \hbox (44.6225pt too wide) in paragraph at lines 296--297 []| \T1/pcr/m/n/10 emodpy_malaria.interventions.drug_campaign\T1/ptm/m/n/10 , Overfull \hbox (14.6225pt too wide) in paragraph at lines 297--298 []| \T1/pcr/m/n/10 emodpy_malaria.interventions.inputeir\T1/ptm/m/n/10 , Overfull \hbox (26.6225pt too wide) in paragraph at lines 299--300 []| \T1/pcr/m/n/10 emodpy_malaria.interventions.ivermectin\T1/ptm/m/n/10 , Overfull \hbox (20.6225pt too wide) in paragraph at lines 300--301 []| \T1/pcr/m/n/10 emodpy_malaria.interventions.larvicide\T1/ptm/m/n/10 , Overfull \hbox (56.6225pt too wide) in paragraph at lines 301--302 []| \T1/pcr/m/n/10 emodpy_malaria.interventions.mosquitorelease\T1/ptm/m/n/10 , Overfull \hbox (14.6225pt too wide) in paragraph at lines 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paragraph at lines 309--310 []| \T1/pcr/m/n/10 emodpy_malaria.interventions.vaccine\T1/ptm/m/n/10 , Overfull \hbox (56.6225pt too wide) in paragraph at lines 311--312 []| \T1/pcr/m/n/10 emodpy_malaria.malaria_vector_species_params\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 315--317 []\T1/pcr/m/n/10 MosquitoRelease() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (6.12027pt too wide) in paragraph at lines 315--317 \T1/ptm/m/it/10 emodpy_malaria.interventions.mosquitorelease\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 320--322 []\T1/pcr/m/n/10 new_intervention() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 320--322 \T1/ptm/m/it/10 emodpy_malaria.interventions.inputeir\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 322--324 []\T1/pcr/m/n/10 new_intervention_as_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 324--326 []\T1/pcr/m/n/10 new_intervention_as_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 326--328 []\T1/pcr/m/n/10 new_intervention_as_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 328--330 []\T1/pcr/m/n/10 new_intervention_as_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 330--332 []\T1/pcr/m/n/10 new_intervention_as_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 332--334 []\T1/pcr/m/n/10 new_intervention_as_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (6.12027pt too wide) in paragraph at lines 332--334 \T1/ptm/m/it/10 emodpy_malaria.interventions.mosquitorelease\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 334--336 []\T1/pcr/m/n/10 new_intervention_as_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 334--336 \T1/ptm/m/it/10 emodpy_malaria.interventions.spacespraying\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 336--338 []\T1/pcr/m/n/10 new_intervention_as_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 338--340 []\T1/pcr/m/n/10 new_intervention_as_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 340--342 []\T1/pcr/m/n/10 new_intervention_as_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (71.0599pt too wide) in paragraph at lines 345--347 []\T1/pcr/m/n/10 parameters \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.repo rters.builtin.MalariaImmunityReport Overfull \hbox (84.70978pt too wide) in paragraph at lines 347--349 []\T1/pcr/m/n/10 parameters \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.repo rters.builtin.MalariaPatientJSONReport Overfull \hbox (46.07018pt too 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10000) in paragraph at lines 441--443 []\T1/pcr/m/n/10 SpatialReportMalariaFiltered \T1/ptm/m/n/10 (\T1/ptm/m/it/10 c lass in Underfull \hbox (badness 10000) in paragraph at lines 443--445 []\T1/pcr/m/n/10 species_params() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (16.61057pt too wide) in paragraph at lines 443--445 \T1/ptm/m/it/10 emodpy_malaria.malaria_vector_species_params\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 445--447 []\T1/pcr/m/n/10 SugarTrap() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 445--447 \T1/ptm/m/it/10 emodpy_malaria.interventions.sugartrap\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 450--452 \T1/ptm/m/it/10 ule emodpy_malaria.interventions.common\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 455--457 []\T1/pcr/m/n/10 UDBednet() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 455--457 \T1/ptm/m/it/10 emodpy_malaria.interventions.udbednet\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 460--462 []\T1/pcr/m/n/10 VectorHabitatReport \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in [97]) (./institute-for-disease-modeling-emodpy-malaria.aux) ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on institute-for-disease-modeling-emodpy-malaria.pdf (101 pages, 374465 bytes). 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