Read the Docs build information Build id: 848180 Project: institute-for-disease-modeling-emod-api Version: latest Commit: 71d5f9fbd7e59c9d2bbb5a28acfea7953cc9046c Date: 2022-02-09T01:42:17.834797Z State: finished Success: True [rtd-command-info] start-time: 2022-02-09T01:42:19.758533Z, end-time: 2022-02-09T01:42:21.811652Z, duration: 2, exit-code: 0 git clone --no-single-branch --depth 50 git@github.com:InstituteforDiseaseModeling/emod-api.git . Cloning into '.'... Warning: Permanently added 'github.com,192.30.255.113' (ECDSA) to the list of known hosts. [rtd-command-info] start-time: 2022-02-09T01:42:22.018995Z, end-time: 2022-02-09T01:42:22.244208Z, duration: 0, exit-code: 0 git checkout --force origin/master Note: checking out 'origin/master'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at 71d5f9f Bump version: 1.20.5 → 1.20.6 [rtd-command-info] start-time: 2022-02-09T01:42:22.405984Z, end-time: 2022-02-09T01:42:22.471758Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2022-02-09T01:42:23.644729Z, end-time: 2022-02-09T01:42:29.421085Z, duration: 5, exit-code: 0 python3.7 -mvirtualenv --system-site-packages Using base prefix '/home/docs/.pyenv/versions/3.7.9' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2022-02-09T01:42:29.595516Z, end-time: 2022-02-09T01:42:32.971444Z, duration: 3, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip<=21.3.1 setuptools<58.3.0 Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/simple Collecting pip<=21.3.1 Downloading pip-21.3.1-py3-none-any.whl (1.7 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.7/1.7 MB 33.1 MB/s eta 0:00:00 Collecting setuptools<58.3.0 Downloading setuptools-58.2.0-py3-none-any.whl (946 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 946.1/946.1 KB 234.9 MB/s eta 0:00:00 Installing collected packages: setuptools, pip Attempting uninstall: setuptools Found existing installation: setuptools 60.8.1 Uninstalling setuptools-60.8.1: Successfully uninstalled setuptools-60.8.1 Attempting uninstall: pip Found existing installation: pip 22.0.3 Uninstalling pip-22.0.3: Successfully uninstalled pip-22.0.3 Successfully installed pip-21.3.1 setuptools-58.2.0 [rtd-command-info] start-time: 2022-02-09T01:42:33.131962Z, end-time: 2022-02-09T01:42:44.351742Z, duration: 11, exit-code: 0 python -m pip install --upgrade --no-cache-dir -I mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<2.2 setuptools<58.3.0 Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/simple Collecting mock==1.0.1 Downloading mock-1.0.1.zip (861 kB) Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.6-py2.py3-none-any.whl (3.1 MB) Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) Collecting readthedocs-sphinx-ext<2.2 Downloading readthedocs_sphinx_ext-2.1.4-py2.py3-none-any.whl (29 kB) Collecting setuptools<58.3.0 Downloading setuptools-58.2.0-py3-none-any.whl (946 kB) Collecting future Downloading future-0.18.2.tar.gz (829 kB) Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting docutils>=0.11 Downloading docutils-0.18.1-py2.py3-none-any.whl (570 kB) Collecting babel!=2.0,>=1.3 Downloading Babel-2.9.1-py2.py3-none-any.whl (8.8 MB) Collecting imagesize Downloading imagesize-1.3.0-py2.py3-none-any.whl (5.2 kB) Collecting packaging Downloading packaging-21.3-py3-none-any.whl (40 kB) Collecting Jinja2>=2.3 Downloading Jinja2-3.0.3-py3-none-any.whl (133 kB) Collecting sphinxcontrib-websupport Downloading sphinxcontrib_websupport-1.2.4-py2.py3-none-any.whl (39 kB) Collecting requests>=2.0.0 Downloading requests-2.27.1-py2.py3-none-any.whl (63 kB) Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.2.0-py2.py3-none-any.whl (93 kB) Collecting six>=1.5 Downloading six-1.16.0-py2.py3-none-any.whl (11 kB) Collecting Pygments>=2.0 Downloading Pygments-2.11.2-py3-none-any.whl (1.1 MB) Collecting docutils>=0.11 Downloading docutils-0.17.1-py2.py3-none-any.whl (575 kB) Collecting pytz>=2015.7 Downloading pytz-2021.3-py2.py3-none-any.whl (503 kB) Collecting MarkupSafe>=2.0 Downloading MarkupSafe-2.0.1-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (31 kB) Collecting idna<4,>=2.5 Downloading idna-3.3-py3-none-any.whl (61 kB) Collecting charset-normalizer~=2.0.0 Downloading charset_normalizer-2.0.11-py3-none-any.whl (39 kB) Collecting certifi>=2017.4.17 Downloading certifi-2021.10.8-py2.py3-none-any.whl (149 kB) Collecting urllib3<1.27,>=1.21.1 Downloading urllib3-1.26.8-py2.py3-none-any.whl (138 kB) Collecting pyparsing!=3.0.5,>=2.0.2 Downloading pyparsing-3.0.7-py3-none-any.whl (98 kB) Collecting sphinxcontrib-serializinghtml Downloading sphinxcontrib_serializinghtml-1.1.5-py2.py3-none-any.whl (94 kB) Building wheels for collected packages: mock, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23773 sha256=fc05ef105b2d3abf4edc3ea68e5886ba9720f2125d4f5d0b60e899b74e4b757d Stored in directory: /tmp/pip-ephem-wheel-cache-tlc50n0v/wheels/7a/94/b1/0fdc5339a5bd487a5cc15421ec200d9ba3e2aa7190e4a727f1 Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491070 sha256=401c527e471287a02fd4297e821e288ba334a0591bc03ee6a05f5a0e1bed7045 Stored in directory: /tmp/pip-ephem-wheel-cache-tlc50n0v/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0 Successfully built mock future Installing collected packages: urllib3, sphinxcontrib-serializinghtml, pytz, pyparsing, MarkupSafe, idna, charset-normalizer, certifi, sphinxcontrib-websupport, snowballstemmer, six, setuptools, requests, Pygments, packaging, Jinja2, imagesize, future, docutils, babel, alabaster, sphinx, commonmark, sphinx-rtd-theme, recommonmark, readthedocs-sphinx-ext, pillow, mock ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts. matplotlib 3.3.2 requires pillow>=6.2.0, but you have pillow 5.4.1 which is incompatible. Successfully installed Jinja2-3.0.3 MarkupSafe-2.0.1 Pygments-2.11.2 alabaster-0.7.12 babel-2.9.1 certifi-2021.10.8 charset-normalizer-2.0.11 commonmark-0.8.1 docutils-0.17.1 future-0.18.2 idna-3.3 imagesize-1.3.0 mock-1.0.1 packaging-21.3 pillow-5.4.1 pyparsing-3.0.7 pytz-2021.3 readthedocs-sphinx-ext-2.1.4 recommonmark-0.5.0 requests-2.27.1 setuptools-58.2.0 six-1.16.0 snowballstemmer-2.2.0 sphinx-1.8.6 sphinx-rtd-theme-0.4.3 sphinxcontrib-serializinghtml-1.1.5 sphinxcontrib-websupport-1.2.4 urllib3-1.26.8 WARNING: You are using pip version 21.3.1; however, version 22.0.3 is available. You should consider upgrading via the '/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin/python -m pip install --upgrade pip' command. [rtd-command-info] start-time: 2022-02-09T01:42:44.525591Z, end-time: 2022-02-09T01:42:50.798351Z, duration: 6, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r requirements.txt Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/simple Requirement already satisfied: numpy!=1.19.4 in /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages (from -r requirements.txt (line 1)) (1.19.2) Collecting pyyaml Downloading PyYAML-6.0-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (596 kB) Requirement already satisfied: pandas in /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages (from -r requirements.txt (line 3)) (1.1.3) Requirement already satisfied: scipy in /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages (from -r requirements.txt (line 4)) (1.5.3) Collecting shapely Downloading Shapely-1.8.0-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.whl (1.1 MB) Collecting pyproj Downloading pyproj-3.2.1-cp37-cp37m-manylinux2010_x86_64.whl (6.3 MB) Collecting geographiclib Downloading geographiclib-1.52-py3-none-any.whl (38 kB) Collecting sklearn Downloading sklearn-0.0.tar.gz (1.1 kB) Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting lz4 Downloading lz4-3.1.10-cp37-cp37m-manylinux2010_x86_64.whl (1.8 MB) Collecting prodict Downloading prodict-0.8.18.tar.gz (4.2 kB) Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Requirement already satisfied: python-dateutil>=2.7.3 in /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages (from pandas->-r requirements.txt (line 3)) (2.8.1) Requirement already satisfied: pytz>=2017.2 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from pandas->-r requirements.txt (line 3)) (2021.3) Requirement already satisfied: certifi in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from pyproj->-r requirements.txt (line 6)) (2021.10.8) Collecting scikit-learn Downloading scikit_learn-1.0.2-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (24.8 MB) Requirement already satisfied: six>=1.5 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from python-dateutil>=2.7.3->pandas->-r requirements.txt (line 3)) (1.16.0) Collecting joblib>=0.11 Downloading joblib-1.1.0-py2.py3-none-any.whl (306 kB) Collecting threadpoolctl>=2.0.0 Downloading threadpoolctl-3.1.0-py3-none-any.whl (14 kB) Building wheels for collected packages: sklearn, prodict Building wheel for sklearn (setup.py): started Building wheel for sklearn (setup.py): finished with status 'done' Created wheel for sklearn: filename=sklearn-0.0-py2.py3-none-any.whl size=1310 sha256=97a235d78e9978fa1ac0aee7dbcfe4e38f4d82fa4c2ea38debd75af8bee48b85 Stored in directory: /tmp/pip-ephem-wheel-cache-260x8tv0/wheels/46/ef/c3/157e41f5ee1372d1be90b09f74f82b10e391eaacca8f22d33e Building wheel for prodict (setup.py): started Building wheel for prodict (setup.py): finished with status 'done' Created wheel for prodict: filename=prodict-0.8.18-py3-none-any.whl size=4223 sha256=e12dc9b26157484e70789428b7dc7307e5590adf016e8b1464cca12002eb4dc8 Stored in directory: /tmp/pip-ephem-wheel-cache-260x8tv0/wheels/a8/e6/67/cda708a2cd06853a75a33ecab7ade9eda84e962a7635406c70 Successfully built sklearn prodict Installing collected packages: threadpoolctl, joblib, scikit-learn, sklearn, shapely, pyyaml, pyproj, prodict, lz4, geographiclib Successfully installed geographiclib-1.52 joblib-1.1.0 lz4-3.1.10 prodict-0.8.18 pyproj-3.2.1 pyyaml-6.0 scikit-learn-1.0.2 shapely-1.8.0 sklearn-0.0 threadpoolctl-3.1.0 WARNING: You are using pip version 21.3.1; however, version 22.0.3 is available. You should consider upgrading via the '/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin/python -m pip install --upgrade pip' command. [rtd-command-info] start-time: 2022-02-09T01:42:50.973569Z, end-time: 2022-02-09T01:42:57.640880Z, duration: 6, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r docs/requirements.txt Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/simple Collecting sphinx-rtd-theme~=0.5.0 Downloading sphinx_rtd_theme-0.5.2-py2.py3-none-any.whl (9.1 MB) Collecting sphinxcontrib-napoleon~=0.7 Downloading sphinxcontrib_napoleon-0.7-py2.py3-none-any.whl (17 kB) Collecting sphinx~=3.2.1 Downloading Sphinx-3.2.1-py3-none-any.whl (2.9 MB) Collecting plantweb~=1.2.1 Downloading plantweb-1.2.1-py3-none-any.whl (20 kB) Collecting sphinxcontrib-programoutput~=0.16 Downloading sphinxcontrib_programoutput-0.17-py2.py3-none-any.whl (22 kB) Collecting py-make Downloading py_make-0.1.1-py2.py3-none-any.whl (9.4 kB) Collecting PyGithub~=1.51 Downloading PyGithub-1.55-py3-none-any.whl (291 kB) Collecting pygit2~=1.2.1 Downloading pygit2-1.2.1-cp37-cp37m-manylinux2010_x86_64.whl (3.0 MB) Collecting sphinxext.remoteliteralinclude Downloading sphinxext_remoteliteralinclude-0.3.0-py3-none-any.whl (6.3 kB) Collecting sphinx-copybutton~=0.4.0 Downloading sphinx_copybutton-0.4.0-py3-none-any.whl (12 kB) Collecting docutils<0.17 Downloading docutils-0.16-py2.py3-none-any.whl (548 kB) Collecting pockets>=0.3 Downloading pockets-0.9.1-py2.py3-none-any.whl (26 kB) Requirement already satisfied: six>=1.5.2 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from sphinxcontrib-napoleon~=0.7->-r docs/requirements.txt (line 2)) (1.16.0) Requirement already satisfied: Pygments>=2.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from sphinx~=3.2.1->-r docs/requirements.txt (line 3)) (2.11.2) Collecting sphinxcontrib-qthelp Downloading sphinxcontrib_qthelp-1.0.3-py2.py3-none-any.whl (90 kB) Requirement already satisfied: Jinja2>=2.3 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from sphinx~=3.2.1->-r docs/requirements.txt (line 3)) (3.0.3) Requirement already satisfied: alabaster<0.8,>=0.7 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from sphinx~=3.2.1->-r docs/requirements.txt (line 3)) (0.7.12) Requirement already satisfied: imagesize in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from sphinx~=3.2.1->-r docs/requirements.txt (line 3)) (1.3.0) Requirement already satisfied: packaging in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from sphinx~=3.2.1->-r docs/requirements.txt (line 3)) (21.3) Collecting sphinxcontrib-applehelp Downloading sphinxcontrib_applehelp-1.0.2-py2.py3-none-any.whl (121 kB) Requirement already satisfied: sphinxcontrib-serializinghtml in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from sphinx~=3.2.1->-r docs/requirements.txt (line 3)) (1.1.5) Collecting sphinxcontrib-jsmath Downloading sphinxcontrib_jsmath-1.0.1-py2.py3-none-any.whl (5.1 kB) Collecting sphinxcontrib-devhelp Downloading sphinxcontrib_devhelp-1.0.2-py2.py3-none-any.whl (84 kB) Collecting sphinxcontrib-htmlhelp Downloading sphinxcontrib_htmlhelp-2.0.0-py2.py3-none-any.whl (100 kB) Requirement already satisfied: babel>=1.3 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from sphinx~=3.2.1->-r docs/requirements.txt (line 3)) (2.9.1) Requirement already satisfied: setuptools in 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pyjwt>=2.0 Downloading PyJWT-2.3.0-py3-none-any.whl (16 kB) Collecting deprecated Downloading Deprecated-1.2.13-py2.py3-none-any.whl (9.6 kB) Collecting cached-property Downloading cached_property-1.5.2-py2.py3-none-any.whl (7.6 kB) Collecting cffi>=1.4.0 Downloading cffi-1.15.0-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (427 kB) Requirement already satisfied: pytz>=2015.7 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from babel>=1.3->sphinx~=3.2.1->-r docs/requirements.txt (line 3)) (2021.3) Collecting pycparser Downloading pycparser-2.21-py2.py3-none-any.whl (118 kB) Requirement already satisfied: MarkupSafe>=2.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from Jinja2>=2.3->sphinx~=3.2.1->-r docs/requirements.txt (line 3)) (2.0.1) Requirement already satisfied: urllib3<1.27,>=1.21.1 in 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(3.3) Collecting wrapt<2,>=1.10 Downloading wrapt-1.13.3-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (79 kB) Requirement already satisfied: pyparsing!=3.0.5,>=2.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from packaging->sphinx~=3.2.1->-r docs/requirements.txt (line 3)) (3.0.7) Building wheels for collected packages: docopt Building wheel for docopt (setup.py): started Building wheel for docopt (setup.py): finished with status 'done' Created wheel for docopt: filename=docopt-0.6.2-py2.py3-none-any.whl size=13723 sha256=086d27af0c60e6a2811a5fc3bd9ef77398e9c029813a981f0acdec724435dcc0 Stored in directory: /tmp/pip-ephem-wheel-cache-0lh3e97o/wheels/72/b0/3f/1d95f96ff986c7dfffe46ce2be4062f38ebd04b506c77c81b9 Successfully built docopt Installing collected packages: pycparser, wrapt, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, docutils, cffi, sphinx, pynacl, pyjwt, pockets, docopt, deprecated, cached-property, sphinxext.remoteliteralinclude, sphinxcontrib-programoutput, sphinxcontrib-napoleon, sphinx-rtd-theme, sphinx-copybutton, PyGithub, pygit2, py-make, plantweb Attempting uninstall: docutils Found existing installation: docutils 0.17.1 Uninstalling docutils-0.17.1: Successfully uninstalled docutils-0.17.1 Attempting uninstall: sphinx Found existing installation: Sphinx 1.8.6 Uninstalling Sphinx-1.8.6: Successfully uninstalled Sphinx-1.8.6 Attempting uninstall: sphinx-rtd-theme Found existing installation: sphinx-rtd-theme 0.4.3 Uninstalling sphinx-rtd-theme-0.4.3: Successfully uninstalled sphinx-rtd-theme-0.4.3 Successfully installed PyGithub-1.55 cached-property-1.5.2 cffi-1.15.0 deprecated-1.2.13 docopt-0.6.2 docutils-0.16 plantweb-1.2.1 pockets-0.9.1 py-make-0.1.1 pycparser-2.21 pygit2-1.2.1 pyjwt-2.3.0 pynacl-1.5.0 sphinx-3.2.1 sphinx-copybutton-0.4.0 sphinx-rtd-theme-0.5.2 sphinxcontrib-applehelp-1.0.2 sphinxcontrib-devhelp-1.0.2 sphinxcontrib-htmlhelp-2.0.0 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-napoleon-0.7 sphinxcontrib-programoutput-0.17 sphinxcontrib-qthelp-1.0.3 sphinxext.remoteliteralinclude-0.3.0 wrapt-1.13.3 WARNING: You are using pip version 21.3.1; however, version 22.0.3 is available. You should consider upgrading via the '/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin/python -m pip install --upgrade pip' command. [rtd-command-info] start-time: 2022-02-09T01:42:57.805567Z, end-time: 2022-02-09T01:42:58.658602Z, duration: 0, exit-code: 0 python ./setup.py install --force running install running bdist_egg running egg_info creating emod_api.egg-info writing emod_api.egg-info/PKG-INFO writing dependency_links to emod_api.egg-info/dependency_links.txt writing requirements to emod_api.egg-info/requires.txt writing top-level names to emod_api.egg-info/top_level.txt writing manifest file 'emod_api.egg-info/SOURCES.txt' reading manifest file 'emod_api.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no directories found matching 'emod_api/tests/data/*' warning: no directories found matching 'emod_api/dtk_tools/serialization/test-data/*' adding license file 'LICENSE' writing manifest file 'emod_api.egg-info/SOURCES.txt' installing library code to build/bdist.linux-x86_64/egg running install_lib running build_py creating build creating build/lib creating build/lib/emod_api copying emod_api/__main__.py -> build/lib/emod_api copying emod_api/__init__.py -> build/lib/emod_api copying emod_api/campaign.py -> build/lib/emod_api copying emod_api/schema_to_class.py -> build/lib/emod_api creating build/lib/examples copying examples/spatial_report.py -> build/lib/examples copying examples/weather_file.py -> build/lib/examples copying examples/write_config_from_default_and_params.py -> build/lib/examples copying examples/intervention_from_schema.py -> build/lib/examples copying examples/default_from_schema.py -> build/lib/examples copying examples/migration.py -> build/lib/examples copying examples/serialized_file_mc_to_sc.py -> build/lib/examples copying examples/__init__.py -> build/lib/examples copying examples/some_config_i_found.py -> build/lib/examples copying examples/insetchart.py -> build/lib/examples creating build/lib/emod_api/schema copying emod_api/schema/dtk_post_process_schema.py -> build/lib/emod_api/schema copying emod_api/schema/__main__.py -> build/lib/emod_api/schema copying emod_api/schema/get_schema.py -> build/lib/emod_api/schema copying emod_api/schema/__init__.py -> build/lib/emod_api/schema creating build/lib/emod_api/tabularoutput copying emod_api/tabularoutput/__main__.py -> build/lib/emod_api/tabularoutput copying emod_api/tabularoutput/__init__.py -> build/lib/emod_api/tabularoutput creating build/lib/emod_api/config copying emod_api/config/from_poi_and_binary.py -> build/lib/emod_api/config copying emod_api/config/from_schema.py -> build/lib/emod_api/config copying emod_api/config/dtk_post_process_adhocevents.py -> build/lib/emod_api/config copying emod_api/config/from_overrides.py -> build/lib/emod_api/config copying emod_api/config/default_from_schema.py -> build/lib/emod_api/config copying emod_api/config/__main__.py -> build/lib/emod_api/config copying emod_api/config/default_from_schema_no_validation.py -> build/lib/emod_api/config copying emod_api/config/schema_to_config.py -> build/lib/emod_api/config copying emod_api/config/dtk_pre_process_adhocevents.py -> build/lib/emod_api/config copying emod_api/config/__init__.py -> build/lib/emod_api/config copying emod_api/config/dtk_pre_process_w5ml.py -> build/lib/emod_api/config creating build/lib/emod_api/spatialreports copying emod_api/spatialreports/spatial.py -> build/lib/emod_api/spatialreports copying emod_api/spatialreports/__main__.py -> build/lib/emod_api/spatialreports copying emod_api/spatialreports/__init__.py -> build/lib/emod_api/spatialreports creating build/lib/emod_api/weather copying emod_api/weather/weather.py -> build/lib/emod_api/weather copying emod_api/weather/__main__.py -> build/lib/emod_api/weather copying emod_api/weather/__init__.py -> build/lib/emod_api/weather creating build/lib/emod_api/serialization copying emod_api/serialization/dtkFileSupport.py -> build/lib/emod_api/serialization copying emod_api/serialization/__main__.py -> build/lib/emod_api/serialization copying emod_api/serialization/dtkFileUtility.py -> build/lib/emod_api/serialization copying emod_api/serialization/dtkFileTools.py -> build/lib/emod_api/serialization copying emod_api/serialization/SerializedPopulation.py -> build/lib/emod_api/serialization copying emod_api/serialization/__init__.py -> build/lib/emod_api/serialization copying emod_api/serialization/CensusAndModPop.py -> build/lib/emod_api/serialization creating build/lib/emod_api/interventions copying emod_api/interventions/simple_vaccine.py -> build/lib/emod_api/interventions copying emod_api/interventions/import_pressure.py -> build/lib/emod_api/interventions copying emod_api/interventions/utils.py -> build/lib/emod_api/interventions copying emod_api/interventions/migration.py -> build/lib/emod_api/interventions copying emod_api/interventions/__main__.py -> build/lib/emod_api/interventions copying emod_api/interventions/outbreak.py -> build/lib/emod_api/interventions copying emod_api/interventions/__init__.py -> build/lib/emod_api/interventions copying emod_api/interventions/node_multiplier.py -> build/lib/emod_api/interventions copying emod_api/interventions/common.py -> build/lib/emod_api/interventions creating build/lib/emod_api/migration copying emod_api/migration/migration.py -> build/lib/emod_api/migration copying emod_api/migration/__main__.py -> build/lib/emod_api/migration copying emod_api/migration/__init__.py -> build/lib/emod_api/migration creating build/lib/emod_api/demographics copying emod_api/demographics/DemographicsInputDataParsers.py -> build/lib/emod_api/demographics copying emod_api/demographics/PreDefinedDistributions.py -> build/lib/emod_api/demographics copying emod_api/demographics/Node.py -> build/lib/emod_api/demographics copying emod_api/demographics/__main__.py -> build/lib/emod_api/demographics copying emod_api/demographics/DemographicsGenerator.py -> build/lib/emod_api/demographics copying emod_api/demographics/demographics_utils.py -> build/lib/emod_api/demographics copying emod_api/demographics/Demographics.py -> build/lib/emod_api/demographics copying emod_api/demographics/grid_construction.py -> build/lib/emod_api/demographics copying emod_api/demographics/BaseInputFile.py -> build/lib/emod_api/demographics copying emod_api/demographics/DemographicsTemplates.py -> build/lib/emod_api/demographics copying emod_api/demographics/PropertiesAndAttributes.py -> build/lib/emod_api/demographics copying emod_api/demographics/Updateable.py -> build/lib/emod_api/demographics copying emod_api/demographics/__init__.py -> build/lib/emod_api/demographics creating build/lib/emod_api/channelreports copying emod_api/channelreports/channels.py -> build/lib/emod_api/channelreports copying emod_api/channelreports/__main__.py -> build/lib/emod_api/channelreports copying emod_api/channelreports/__init__.py -> build/lib/emod_api/channelreports creating build/lib/emod_api/migration/client copying emod_api/migration/client/client.py -> build/lib/emod_api/migration/client copying emod_api/migration/client/__init__.py -> build/lib/emod_api/migration/client creating build/lib/tests creating build/lib/tests/unittests copying tests/unittests/test_version.py -> build/lib/tests/unittests copying tests/unittests/test_properties_and_attributes.py -> build/lib/tests/unittests copying tests/unittests/test_schema_imports.py -> build/lib/tests/unittests copying tests/unittests/test_demographics_imports.py -> build/lib/tests/unittests copying tests/unittests/test_migration_imports.py -> build/lib/tests/unittests copying tests/unittests/test_config_imports.py -> build/lib/tests/unittests copying tests/unittests/__init__.py -> build/lib/tests/unittests creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/egg creating build/bdist.linux-x86_64/egg/emod_api creating build/bdist.linux-x86_64/egg/emod_api/schema copying build/lib/emod_api/schema/dtk_post_process_schema.py -> build/bdist.linux-x86_64/egg/emod_api/schema copying build/lib/emod_api/schema/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/schema copying build/lib/emod_api/schema/get_schema.py -> build/bdist.linux-x86_64/egg/emod_api/schema copying build/lib/emod_api/schema/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/schema creating build/bdist.linux-x86_64/egg/emod_api/tabularoutput copying build/lib/emod_api/tabularoutput/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/tabularoutput copying build/lib/emod_api/tabularoutput/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/tabularoutput creating build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/from_poi_and_binary.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/from_schema.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/dtk_post_process_adhocevents.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/from_overrides.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/default_from_schema.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/default_from_schema_no_validation.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/schema_to_config.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/dtk_pre_process_adhocevents.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/dtk_pre_process_w5ml.py -> build/bdist.linux-x86_64/egg/emod_api/config creating build/bdist.linux-x86_64/egg/emod_api/spatialreports copying build/lib/emod_api/spatialreports/spatial.py -> build/bdist.linux-x86_64/egg/emod_api/spatialreports copying build/lib/emod_api/spatialreports/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/spatialreports copying build/lib/emod_api/spatialreports/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/spatialreports creating build/bdist.linux-x86_64/egg/emod_api/weather copying build/lib/emod_api/weather/weather.py -> build/bdist.linux-x86_64/egg/emod_api/weather copying build/lib/emod_api/weather/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/weather copying build/lib/emod_api/weather/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/weather copying build/lib/emod_api/__main__.py -> build/bdist.linux-x86_64/egg/emod_api creating build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/dtkFileSupport.py -> build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/dtkFileUtility.py -> build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/dtkFileTools.py -> build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/SerializedPopulation.py -> build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/CensusAndModPop.py -> build/bdist.linux-x86_64/egg/emod_api/serialization creating build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/simple_vaccine.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/import_pressure.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/utils.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/migration.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/outbreak.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/node_multiplier.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/common.py -> build/bdist.linux-x86_64/egg/emod_api/interventions creating build/bdist.linux-x86_64/egg/emod_api/migration copying build/lib/emod_api/migration/migration.py -> build/bdist.linux-x86_64/egg/emod_api/migration copying build/lib/emod_api/migration/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/migration copying build/lib/emod_api/migration/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/migration creating build/bdist.linux-x86_64/egg/emod_api/migration/client copying build/lib/emod_api/migration/client/client.py -> build/bdist.linux-x86_64/egg/emod_api/migration/client copying build/lib/emod_api/migration/client/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/migration/client creating build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/DemographicsInputDataParsers.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/PreDefinedDistributions.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/Node.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/DemographicsGenerator.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/demographics_utils.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/Demographics.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/grid_construction.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/BaseInputFile.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/DemographicsTemplates.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/PropertiesAndAttributes.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/Updateable.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/__init__.py -> build/bdist.linux-x86_64/egg/emod_api copying build/lib/emod_api/campaign.py -> build/bdist.linux-x86_64/egg/emod_api creating build/bdist.linux-x86_64/egg/emod_api/channelreports copying build/lib/emod_api/channelreports/channels.py -> build/bdist.linux-x86_64/egg/emod_api/channelreports copying build/lib/emod_api/channelreports/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/channelreports copying build/lib/emod_api/channelreports/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/channelreports copying build/lib/emod_api/schema_to_class.py -> build/bdist.linux-x86_64/egg/emod_api creating build/bdist.linux-x86_64/egg/examples copying build/lib/examples/spatial_report.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/weather_file.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/write_config_from_default_and_params.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/intervention_from_schema.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/default_from_schema.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/migration.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/serialized_file_mc_to_sc.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/__init__.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/some_config_i_found.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/insetchart.py -> build/bdist.linux-x86_64/egg/examples creating build/bdist.linux-x86_64/egg/tests creating build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_version.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_properties_and_attributes.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_schema_imports.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_demographics_imports.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_migration_imports.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_config_imports.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/__init__.py -> build/bdist.linux-x86_64/egg/tests/unittests byte-compiling build/bdist.linux-x86_64/egg/emod_api/schema/dtk_post_process_schema.py to dtk_post_process_schema.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/schema/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/schema/get_schema.py to get_schema.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/schema/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/tabularoutput/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/tabularoutput/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/from_poi_and_binary.py to from_poi_and_binary.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/from_schema.py to from_schema.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/dtk_post_process_adhocevents.py to dtk_post_process_adhocevents.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/from_overrides.py to from_overrides.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/default_from_schema.py to default_from_schema.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/default_from_schema_no_validation.py to default_from_schema_no_validation.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/schema_to_config.py to schema_to_config.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/dtk_pre_process_adhocevents.py to dtk_pre_process_adhocevents.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/dtk_pre_process_w5ml.py to dtk_pre_process_w5ml.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/spatialreports/spatial.py to spatial.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/spatialreports/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/spatialreports/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/weather/weather.py to weather.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/weather/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/weather/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/dtkFileSupport.py to dtkFileSupport.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/dtkFileUtility.py to dtkFileUtility.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/dtkFileTools.py to dtkFileTools.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/SerializedPopulation.py to SerializedPopulation.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/CensusAndModPop.py to CensusAndModPop.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/simple_vaccine.py to simple_vaccine.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/import_pressure.py to import_pressure.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/utils.py to utils.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/migration.py to migration.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/outbreak.py to outbreak.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/node_multiplier.py to node_multiplier.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/common.py to common.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/migration/migration.py to migration.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/migration/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/migration/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/migration/client/client.py to client.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/migration/client/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/DemographicsInputDataParsers.py to DemographicsInputDataParsers.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/PreDefinedDistributions.py to PreDefinedDistributions.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/Node.py to Node.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/DemographicsGenerator.py to DemographicsGenerator.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/demographics_utils.py to demographics_utils.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/Demographics.py to Demographics.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/grid_construction.py to grid_construction.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/BaseInputFile.py to BaseInputFile.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/DemographicsTemplates.py to DemographicsTemplates.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/PropertiesAndAttributes.py to PropertiesAndAttributes.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/Updateable.py to Updateable.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/campaign.py to campaign.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/channelreports/channels.py to channels.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/channelreports/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/channelreports/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/schema_to_class.py to schema_to_class.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/spatial_report.py to spatial_report.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/weather_file.py to weather_file.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/write_config_from_default_and_params.py to write_config_from_default_and_params.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/intervention_from_schema.py to intervention_from_schema.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/default_from_schema.py to default_from_schema.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/migration.py to migration.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/serialized_file_mc_to_sc.py to serialized_file_mc_to_sc.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/some_config_i_found.py to some_config_i_found.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/insetchart.py to insetchart.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_version.py to test_version.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_properties_and_attributes.py to test_properties_and_attributes.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_schema_imports.py to test_schema_imports.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_demographics_imports.py to test_demographics_imports.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_migration_imports.py to test_migration_imports.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_config_imports.py to test_config_imports.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/__init__.py to __init__.cpython-37.pyc creating build/bdist.linux-x86_64/egg/EGG-INFO copying emod_api.egg-info/PKG-INFO -> build/bdist.linux-x86_64/egg/EGG-INFO copying emod_api.egg-info/SOURCES.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying emod_api.egg-info/dependency_links.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying emod_api.egg-info/requires.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying emod_api.egg-info/top_level.txt -> build/bdist.linux-x86_64/egg/EGG-INFO zip_safe flag not set; analyzing archive contents... emod_api.config.__pycache__.from_poi_and_binary.cpython-37: module references __file__ emod_api.serialization.__pycache__.dtkFileTools.cpython-37: module references __file__ emod_api.serialization.__pycache__.dtkFileUtility.cpython-37: module references __file__ examples.__pycache__.insetchart.cpython-37: module references __file__ examples.__pycache__.spatial_report.cpython-37: module references __file__ examples.__pycache__.weather_file.cpython-37: module references __file__ creating dist creating 'dist/emod_api-1.20.6-py3.7.egg' and adding 'build/bdist.linux-x86_64/egg' to it removing 'build/bdist.linux-x86_64/egg' (and everything under it) Processing emod_api-1.20.6-py3.7.egg creating /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages/emod_api-1.20.6-py3.7.egg Extracting emod_api-1.20.6-py3.7.egg to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Adding emod-api 1.20.6 to easy-install.pth file Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages/emod_api-1.20.6-py3.7.egg Processing dependencies for emod-api==1.20.6 Searching for prodict==0.8.18 Best match: prodict 0.8.18 Adding prodict 0.8.18 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for lz4==3.1.10 Best match: lz4 3.1.10 Adding lz4 3.1.10 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for sklearn==0.0 Best match: sklearn 0.0 Adding sklearn 0.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for geographiclib==1.52 Best match: geographiclib 1.52 Adding geographiclib 1.52 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for pyproj==3.2.1 Best match: pyproj 3.2.1 Adding pyproj 3.2.1 to easy-install.pth file Installing pyproj script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for Shapely==1.8.0 Best match: Shapely 1.8.0 Adding Shapely 1.8.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for scipy==1.5.3 Best match: scipy 1.5.3 Adding scipy 1.5.3 to easy-install.pth file Using /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages Searching for pandas==1.1.3 Best match: pandas 1.1.3 pandas 1.1.3 is already the active version in easy-install.pth Using /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages Searching for PyYAML==6.0 Best match: PyYAML 6.0 Adding PyYAML 6.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for numpy==1.19.2 Best match: numpy 1.19.2 numpy 1.19.2 is already the active version in easy-install.pth Installing f2py script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin Installing f2py3 script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin Installing f2py3.7 script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin Using /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages Searching for scikit-learn==1.0.2 Best match: scikit-learn 1.0.2 Adding scikit-learn 1.0.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for certifi==2021.10.8 Best match: certifi 2021.10.8 Adding certifi 2021.10.8 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for pytz==2021.3 Best match: pytz 2021.3 Adding pytz 2021.3 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for python-dateutil==2.8.1 Best match: python-dateutil 2.8.1 python-dateutil 2.8.1 is already the active version in easy-install.pth Using /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages Searching for joblib==1.1.0 Best match: joblib 1.1.0 Adding joblib 1.1.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for threadpoolctl==3.1.0 Best match: threadpoolctl 3.1.0 Adding threadpoolctl 3.1.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for six==1.16.0 Best match: six 1.16.0 Adding six 1.16.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Finished processing dependencies for emod-api==1.20.6 [rtd-command-info] start-time: 2022-02-09T01:43:02.173593Z, end-time: 2022-02-09T01:43:02.239445Z, duration: 0, exit-code: 0 cat docs/conf.py # -*- coding: utf-8 -*- # # Sphinx Demo docs build configuration file, created by # sphinx-quickstart on Fri Aug 26 16:52:16 2016. # # This file is execfile()d with the current directory set to its # containing dir. # # Note that not all possible configuration values are present in this # autogenerated file. # # All configuration values have a default; values that are commented out # serve to show the default. # If extensions (or modules to document with autodoc) are in another directory, # add these directories to sys.path here. If the directory is relative to the # docs root, use os.path.abspath to make it absolute, like shown here. # import os import subprocess import sys import sphinx_rtd_theme import configparser from datetime import datetime if sys.platform in ["linux", "darwin"]: subprocess.check_output(["make", "generate-api"], cwd=os.path.dirname(os.path.abspath(__file__))) else: subprocess.check_output(["make.bat", "generate-api"], cwd=os.path.dirname(os.path.abspath(__file__))) # -- General configuration ------------------------------------------------ tags.add('emodapi') # If your docs needs a minimal Sphinx version, state it here. # # needs_sphinx = '1.0' # Add any Sphinx extension module names here, as strings. They can be # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom # ones. extensions = [ 'sphinx.ext.mathjax', 'sphinx.ext.githubpages', 'sphinx.ext.autodoc', 'sphinxcontrib.napoleon', 'sphinx.ext.todo', 'plantweb.directive', 'sphinxcontrib.programoutput', 'sphinx_copybutton', 'sphinx.ext.intersphinx', 'sphinxext.remoteliteralinclude' ] plantuml = 'plantweb' autodoc_default_options = { 'member-order': 'bysource', 'members': None, 'exclude-members': '__all__' } autodoc_mock_imports = ['emod_api.dtk_tools'] napoleon_google_docstring = True # napoleon_numpy_docstring = True # Add any paths that contain templates here, relative to this directory. templates_path = ['_templates'] # The suffix(es) of source filenames. # You can specify multiple suffix as a list of string: # # source_suffix = ['.rst', '.md'] source_suffix = '.rst' # The encoding of source files. # # source_encoding = 'utf-8-sig' # The master toctree document. master_doc = 'index' # General information about the project. project = u'emod-api' copyright = f'1999 - {datetime.today().year}, Bill & Melinda Gates Foundation. All rights reserved.' author = u'Institute for Disease Modeling' # The version info for the project you're documenting, acts as replacement for # |version| and |release|, also used in various other places throughout the # built documents. # # The short X.Y version. #current_path = os.path.dirname(__file__) #version_path = os.path.join(current_path, '..', '.bumpversion.cfg') #config = configparser.ConfigParser() #config.read(version_path) #version = config['bumpversion']['current_version'] # The full version, including alpha/beta/rc tags. # release = u'1.0' # The language for content autogenerated by Sphinx. Refer to docs # for a list of supported languages. # # This is also used if you do content translation via gettext catalogs. # Usually you set "language" from the command line for these cases. language = None # There are two options for replacing |today|: either, you set today to some # non-false value, then it is used: # # today = '' # # Else, today_fmt is used as the format for a strftime call. # # today_fmt = '%B %d, %Y' # List of patterns, relative to source directory, that match files and # directories to ignore when looking for source files. # This patterns also effect to html_static_path and html_extra_path exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store'] # The reST default role (used for this markup: `text`) to use for all # documents. # # default_role = None # If true, '()' will be appended to :func: etc. cross-reference text. # # add_function_parentheses = True # If true, the current module name will be prepended to all description # unit titles (such as .. function::). # # add_module_names = True # If true, sectionauthor and moduleauthor directives will be shown in the # output. They are ignored by default. # # show_authors = False # The name of the Pygments (syntax highlighting) style to use. pygments_style = 'sphinx' # A list of ignored prefixes for module index sorting. # modindex_common_prefix = [] # If true, keep warnings as "system message" paragraphs in the built documents. # keep_warnings = False # If true, `todo` and `todoList` produce output, else they produce nothing. todo_include_todos = False # RST epilog is added to the end of every topic. Useful for replace # directives to use across the docset. rst_epilog = "\n.. include:: /variables.txt" # -- Options for HTML output ---------------------------------------------- # The theme to use for HTML and HTML Help pages. See the docs for # a list of builtin themes. # html_theme = 'sphinx_rtd_theme' # Theme options are theme-specific and customize the look and feel of a theme # further. For a list of options available for each theme, see the # docs. # # # html_theme_options = { # } # Add any paths that contain custom themes here, relative to this directory. html_theme_path = [sphinx_rtd_theme.get_html_theme_path()] # The name for this set of Sphinx documents. # " v docs" by default. # # html_title = u'Sphinx Demo v1.0' # A shorter title for the navigation bar. Default is the same as html_title. # # html_short_title = None # The name of an image file (relative to this directory) to place at the top # of the sidebar. # html_logo = "images/IDM_white.png" # The name of an image file (relative to this directory) to use as a favicon of # the docs. This file should be a Windows icon file (.ico) being 16x16 or 32x32 # pixels large. # html_favicon = "images/favicon.ico" # Add any paths that contain custom static files (such as style sheets) here, # relative to this directory. They are copied after the builtin static files, # so a file named "default.css" will overwrite the builtin "default.css". html_static_path = ['_static'] html_context = { 'css_files': [ '_static/theme_overrides.css', '_static/copy_button.css' ] } html_js_files = ['show_block_by_os.js'] # Add any extra paths that contain custom files (such as robots.txt or # .htaccess) here, relative to this directory. These files are copied # directly to the root of the docs. # # html_extra_path = [] # If not None, a 'Last updated on:' timestamp is inserted at every page # bottom, using the given strftime format. # The empty string is equivalent to '%b %d, %Y'. # # html_last_updated_fmt = None # If true, SmartyPants will be used to convert quotes and dashes to # typographically correct entities. # # html_use_smartypants = True # Custom sidebar templates, maps document names to template names. # # html_sidebars = {} # Additional templates that should be rendered to pages, maps page names to # template names. # # html_additional_pages = {} # If false, no module index is generated. # # html_domain_indices = True # If false, no index is generated. # # html_use_index = True # If true, the index is split into individual pages for each letter. # # html_split_index = False # If true, links to the reST sources are added to the pages. # html_show_sourcelink = False # If true, "Created using Sphinx" is shown in the HTML footer. Default is True. # html_show_sphinx = False # If true, "(C) Copyright ..." is shown in the HTML footer. Default is True. # # html_show_copyright = True # If true, an OpenSearch description file will be output, and all pages will # contain a tag referring to it. The value of this option must be the # base URL from which the finished HTML is served. # html_use_opensearch = 'www.idmod.org/docs/' # This is the file name suffix for HTML files (e.g. ".xhtml"). # html_file_suffix = None # Language to be used for generating the HTML full-text search index. # Sphinx supports the following languages: # 'da', 'de', 'en', 'es', 'fi', 'fr', 'hu', 'it', 'ja' # 'nl', 'no', 'pt', 'ro', 'ru', 'sv', 'tr', 'zh' # # html_search_language = 'en' # A dictionary with options for the search language support, empty by default. # 'ja' uses this config value. # 'zh' user can custom change `jieba` dictionary path. # # html_search_options = {'type': 'default'} # The name of a javascript file (relative to the configuration directory) that # implements a search results scorer. If empty, the default will be used. # # html_search_scorer = 'scorer.js' # Output file base name for HTML help builder. htmlhelp_basename = 'EMOD-API' # -- Options for LaTeX output --------------------------------------------- latex_elements = { # The paper size ('letterpaper' or 'a4paper'). # # 'papersize': 'letterpaper', # The font size ('10pt', '11pt' or '12pt'). # # 'pointsize': '10pt', # Additional stuff for the LaTeX preamble. # # 'preamble': '', # Latex figure (float) alignment # # 'figure_align': 'htbp', } # Grouping the document tree into LaTeX files. List of tuples # (source start file, target name, title, # author, documentclass [howto, manual, or own class]). latex_documents = [ (master_doc, 'emod-api-docs.tex', u'emod-api', u'Institute for Disease Modeling', 'manual'), ] # The name of an image file (relative to this directory) to place at the top of # the title page. # # latex_logo = None # For "manual" documents, if this is true, then toplevel headings are parts, # not chapters. # # latex_use_parts = False # If true, show page references after internal links. # # latex_show_pagerefs = False # If true, show URL addresses after external links. # # latex_show_urls = False # Documents to append as an appendix to all manuals. # # latex_appendices = [] # It false, will not define \strong, \code, itleref, \crossref ... but only # \sphinxstrong, ..., \sphinxtitleref, ... To help avoid clash with user added # packages. # # latex_keep_old_macro_names = True # If false, no module index is generated. # # latex_domain_indices = True # -- Options for manual page output --------------------------------------- # One entry per manual page. List of tuples # (source start file, name, description, authors, manual section). man_pages = [ (master_doc, 'emod-api-docs', u'emod-api', [author], 1) ] # If true, show URL addresses after external links. # man_show_urls = True # -- Options for Texinfo output ------------------------------------------- # Grouping the document tree into Texinfo files. List of tuples # (source start file, target name, title, author, # dir menu entry, description, category) texinfo_documents = [ (master_doc, 'emod-api-docs', u'emod-api', author, 'Institute for Disease Modeling', 'How to use emodpy for disease simulations.', 'Miscellaneous'), ] # Documents to append as an appendix to all manuals. # # texinfo_appendices = [] # If false, no module index is generated. # # texinfo_domain_indices = True # How to display URL addresses: 'footnote', 'no', or 'inline'. # # texinfo_show_urls = 'footnote' # If true, do not generate a @detailmenu in the "Top" node's menu. # # texinfo_no_detailmenu = False # Example configuration for intersphinx: refer to the Python standard library. intersphinx_mapping = {'python': ('https://docs.python.org/3', None), 'emodpy': ('https://docs.idmod.org/projects/emodpy/en/latest/', None), 'idmtools': ('https://docs.idmod.org/projects/idmtools/en/latest/', None), 'pycomps': ('https://docs.idmod.org/projects/pycomps/en/latest/', None) } ########################################################################### # auto-created readthedocs.org specific configuration # ########################################################################### # # The following code was added during an automated build on readthedocs.org # It is auto created and injected for every build. The result is based on the # conf.py.tmpl file found in the readthedocs.org codebase: # https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl # # Note: this file shouldn't rely on extra dependencies. import importlib import sys import os.path # Borrowed from six. PY3 = sys.version_info[0] == 3 string_types = str if PY3 else basestring from sphinx import version_info # Get suffix for proper linking to GitHub # This is deprecated in Sphinx 1.3+, # as each page can have its own suffix if globals().get('source_suffix', False): if isinstance(source_suffix, string_types): SUFFIX = source_suffix elif isinstance(source_suffix, (list, tuple)): # Sphinx >= 1.3 supports list/tuple to define multiple suffixes SUFFIX = source_suffix[0] elif isinstance(source_suffix, dict): # Sphinx >= 1.8 supports a mapping dictionary for multiple suffixes SUFFIX = list(source_suffix.keys())[0] # make a ``list()`` for py2/py3 compatibility else: # default to .rst SUFFIX = '.rst' else: SUFFIX = '.rst' # Add RTD Static Path. Add to the end because it overwrites previous files. if not 'html_static_path' in globals(): html_static_path = [] if os.path.exists('_static'): html_static_path.append('_static') # Add RTD Theme only if they aren't overriding it already using_rtd_theme = ( ( 'html_theme' in globals() and html_theme in ['default'] and # Allow people to bail with a hack of having an html_style 'html_style' not in globals() ) or 'html_theme' not in globals() ) if using_rtd_theme: theme = importlib.import_module('sphinx_rtd_theme') html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} if 'html_theme_path' in globals(): html_theme_path.append(theme.get_html_theme_path()) else: html_theme_path = [theme.get_html_theme_path()] if globals().get('websupport2_base_url', False): websupport2_base_url = 'https://readthedocs.com/websupport' websupport2_static_url = 'https://assets.readthedocs.com/' #Add project information to the template context. context = { 'using_theme': using_rtd_theme, 'html_theme': html_theme, 'current_version': "latest", 'version_slug': "latest", 'MEDIA_URL': "https://media.readthedocs.com/media/", 'STATIC_URL': "https://assets.readthedocs.com/", 'PRODUCTION_DOMAIN': "readthedocs.com", 'versions': [ ("latest", "/en/latest/"), ("v2.0.1", "/en/v2.0.1/"), ("v1.20.2", "/en/v1.20.2/"), ("v1.20.1", "/en/v1.20.1/"), ("v1.19.13", "/en/v1.19.13/"), ("v1.19.2", "/en/v1.19.2/"), ("v1.18.1", "/en/v1.18.1/"), ("v1.17.4", "/en/v1.17.4/"), ("v1.17.3", "/en/v1.17.3/"), ("v1.17.2", "/en/v1.17.2/"), ("v1.16.10", "/en/v1.16.10/"), ("v1.16.5", "/en/v1.16.5/"), ("v1.16.2", "/en/v1.16.2/"), ("v1.15.6", "/en/v1.15.6/"), ("v1.15.4", "/en/v1.15.4/"), ("v1.15.1", "/en/v1.15.1/"), ("v1.14.7", "/en/v1.14.7/"), ("v1.14.1", "/en/v1.14.1/"), ("v1.13.1", "/en/v1.13.1/"), ("v1.12.1", "/en/v1.12.1/"), ("v1.11.7", "/en/v1.11.7/"), ("v1.11.4", "/en/v1.11.4/"), ("v1.11.0", "/en/v1.11.0/"), ("v1.10.8", "/en/v1.10.8/"), ("v1.10.6", "/en/v1.10.6/"), ("v1.10.5", "/en/v1.10.5/"), ("v1.10.3", "/en/v1.10.3/"), ("v1.10.2", "/en/v1.10.2/"), ("v1.9.2", "/en/v1.9.2/"), ("v1.9.1", "/en/v1.9.1/"), ("v1.8.9", "/en/v1.8.9/"), ("v1.8.8", "/en/v1.8.8/"), ("v1.8.6", "/en/v1.8.6/"), ("v1.8.2", "/en/v1.8.2/"), ("v1.7.5", "/en/v1.7.5/"), ("v1.7.4", "/en/v1.7.4/"), ("v1.7.1", "/en/v1.7.1/"), ("v1.6.3", "/en/v1.6.3/"), ("v1.5.1", "/en/v1.5.1/"), ("v1.5.0", "/en/v1.5.0/"), ], 'downloads': [ ("pdf", "//docs.idmod.org/_/downloads/emod-api/en/latest/pdf/"), ("html", "//docs.idmod.org/_/downloads/emod-api/en/latest/htmlzip/"), ], 'subprojects': [ ], 'slug': 'institute-for-disease-modeling-emod-api', 'name': u'emod-api', 'rtd_language': u'en', 'programming_language': u'py', 'canonical_url': 'https://docs.idmod.org/projects/emod-api/en/latest/', 'analytics_code': 'UA-87656833-3', 'single_version': False, 'conf_py_path': '/docs/', 'api_host': 'https://readthedocs.com', 'github_user': 'InstituteforDiseaseModeling', 'proxied_api_host': '/_', 'github_repo': 'emod-api', 'github_version': 'master', 'display_github': True, 'bitbucket_user': 'None', 'bitbucket_repo': 'None', 'bitbucket_version': 'master', 'display_bitbucket': False, 'gitlab_user': 'None', 'gitlab_repo': 'None', 'gitlab_version': 'master', 'display_gitlab': False, 'READTHEDOCS': True, 'using_theme': (html_theme == "default"), 'new_theme': (html_theme == "sphinx_rtd_theme"), 'source_suffix': SUFFIX, 'ad_free': False, 'docsearch_disabled': False, 'user_analytics_code': 'UA-87656833-3', 'global_analytics_code': 'UA-17997319-2', 'commit': '71d5f9fb', } # For sphinx >=1.8 we can use html_baseurl to set the canonical URL. # https://www.sphinx-doc.org/en/master/usage/configuration.html#confval-html_baseurl if version_info >= (1, 8): if not globals().get('html_baseurl'): html_baseurl = context['canonical_url'] context['canonical_url'] = None if 'html_context' in globals(): html_context.update(context) else: html_context = context # Add custom RTD extension if 'extensions' in globals(): # Insert at the beginning because it can interfere # with other extensions. # See https://github.com/rtfd/readthedocs.org/pull/4054 extensions.insert(0, "readthedocs_ext.readthedocs") else: extensions = ["readthedocs_ext.readthedocs"] # Add External version warning banner to the external version documentation if 'branch' == 'external': extensions.insert(1, "readthedocs_ext.external_version_warning") readthedocs_vcs_url = 'None' readthedocs_build_url = 'https://readthedocs.com/projects/institute-for-disease-modeling-emod-api/builds/848180/' project_language = 'en' # User's Sphinx configurations language_user = globals().get('language', None) latex_engine_user = globals().get('latex_engine', None) latex_elements_user = globals().get('latex_elements', None) # Remove this once xindy gets installed in Docker image and XINDYOPS # env variable is supported # https://github.com/rtfd/readthedocs-docker-images/pull/98 latex_use_xindy = False chinese = any([ language_user in ('zh_CN', 'zh_TW'), project_language in ('zh_CN', 'zh_TW'), ]) japanese = any([ language_user == 'ja', project_language == 'ja', ]) if chinese: latex_engine = latex_engine_user or 'xelatex' latex_elements_rtd = { 'preamble': '\\usepackage[UTF8]{ctex}\n', } latex_elements = latex_elements_user or latex_elements_rtd elif japanese: latex_engine = latex_engine_user or 'platex' # Make sure our build directory is always excluded exclude_patterns = globals().get('exclude_patterns', []) exclude_patterns.extend(['_build']) [rtd-command-info] start-time: 2022-02-09T01:43:02.406566Z, end-time: 2022-02-09T01:43:28.171964Z, duration: 25, exit-code: 0 python -m sphinx -T -E -W --keep-going -b html -d _build/doctrees -D language=en . _build/html Running Sphinx v3.2.1 rm: cannot remove 'emod_api_index.rst': No such file or directory rm: cannot remove 'modules.rst': No such file or directory make: [generate-api] Error 1 (ignored) loading translations [en]... done making output directory... done loading intersphinx inventory from https://docs.python.org/3/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emodpy/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/idmtools/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/pycomps/en/latest/objects.inv... building [mo]: targets for 0 po files that are out of date building [html]: targets for 58 source files that are out of date updating environment: [new config] 58 added, 0 changed, 0 removed reading sources... [ 1%] emod_api reading sources... [ 3%] emod_api.campaign reading sources... [ 5%] emod_api.channelreports reading sources... [ 6%] emod_api.channelreports.channels reading sources... [ 8%] emod_api.config reading sources... [ 10%] emod_api.config.default_from_schema reading sources... [ 12%] emod_api.config.default_from_schema_no_validation reading sources... [ 13%] emod_api.config.dtk_post_process_adhocevents reading sources... [ 15%] emod_api.config.dtk_pre_process_adhocevents reading sources... [ 17%] emod_api.config.dtk_pre_process_w5ml reading sources... [ 18%] emod_api.config.from_overrides reading sources... [ 20%] emod_api.config.from_poi_and_binary reading sources... [ 22%] emod_api.config.from_schema reading sources... [ 24%] emod_api.config.schema_to_config emod_api.config.schema_to_config is deprecated. Please use emod_api.config.from_schema. reading sources... [ 25%] emod_api.demographics reading sources... [ 27%] emod_api.demographics.BaseInputFile reading sources... [ 29%] emod_api.demographics.Demographics reading sources... [ 31%] emod_api.demographics.DemographicsGenerator reading sources... [ 32%] emod_api.demographics.DemographicsInputDataParsers reading sources... [ 34%] emod_api.demographics.DemographicsTemplates reading sources... [ 36%] emod_api.demographics.Node reading sources... [ 37%] emod_api.demographics.PreDefinedDistributions reading sources... [ 39%] emod_api.demographics.PropertiesAndAttributes reading sources... [ 41%] emod_api.demographics.Updateable reading sources... [ 43%] emod_api.demographics.demographics_utils reading sources... [ 44%] emod_api.demographics.grid_construction reading sources... [ 46%] emod_api.interventions reading sources... [ 48%] emod_api.interventions.common reading sources... [ 50%] emod_api.interventions.import_pressure reading sources... [ 51%] emod_api.interventions.migration reading sources... [ 53%] emod_api.interventions.node_multiplier reading sources... [ 55%] emod_api.interventions.outbreak reading sources... [ 56%] emod_api.interventions.simple_vaccine reading sources... [ 58%] emod_api.interventions.utils reading sources... [ 60%] emod_api.migration reading sources... [ 62%] emod_api.migration.client reading sources... [ 63%] emod_api.migration.client.client reading sources... [ 65%] emod_api.migration.migration reading sources... [ 67%] emod_api.schema reading sources... [ 68%] emod_api.schema.dtk_post_process_schema reading sources... [ 70%] emod_api.schema.get_schema reading sources... [ 72%] emod_api.schema_to_class reading sources... [ 74%] emod_api.serialization reading sources... [ 75%] emod_api.serialization.CensusAndModPop reading sources... [ 77%] emod_api.serialization.SerializedPopulation reading sources... [ 79%] emod_api.serialization.dtkFileSupport reading sources... [ 81%] emod_api.serialization.dtkFileTools reading sources... [ 82%] emod_api.serialization.dtkFileUtility reading sources... [ 84%] emod_api.spatialreports reading sources... [ 86%] emod_api.spatialreports.spatial reading sources... [ 87%] emod_api.tabularoutput reading sources... [ 89%] emod_api.weather reading sources... [ 91%] emod_api.weather.weather reading sources... [ 93%] emod_api_index reading sources... [ 94%] faq reading sources... [ 96%] glossary reading sources... [ 98%] index reading sources... [100%] installation looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 1%] emod_api writing output... [ 3%] emod_api.campaign writing output... [ 5%] emod_api.channelreports writing output... [ 6%] emod_api.channelreports.channels writing output... [ 8%] emod_api.config writing output... [ 10%] emod_api.config.default_from_schema writing output... [ 12%] emod_api.config.default_from_schema_no_validation writing output... [ 13%] emod_api.config.dtk_post_process_adhocevents writing output... [ 15%] emod_api.config.dtk_pre_process_adhocevents writing output... [ 17%] emod_api.config.dtk_pre_process_w5ml writing output... [ 18%] emod_api.config.from_overrides writing output... [ 20%] emod_api.config.from_poi_and_binary writing output... [ 22%] emod_api.config.from_schema writing output... [ 24%] emod_api.config.schema_to_config writing output... [ 25%] emod_api.demographics writing output... [ 27%] emod_api.demographics.BaseInputFile writing output... [ 29%] emod_api.demographics.Demographics writing output... [ 31%] emod_api.demographics.DemographicsGenerator writing output... [ 32%] emod_api.demographics.DemographicsInputDataParsers writing output... [ 34%] emod_api.demographics.DemographicsTemplates writing output... [ 36%] emod_api.demographics.Node writing output... [ 37%] emod_api.demographics.PreDefinedDistributions writing output... [ 39%] emod_api.demographics.PropertiesAndAttributes writing output... [ 41%] emod_api.demographics.Updateable writing output... [ 43%] emod_api.demographics.demographics_utils writing output... [ 44%] emod_api.demographics.grid_construction writing output... [ 46%] emod_api.interventions writing output... [ 48%] emod_api.interventions.common writing output... [ 50%] emod_api.interventions.import_pressure writing output... [ 51%] emod_api.interventions.migration writing output... [ 53%] emod_api.interventions.node_multiplier writing output... [ 55%] emod_api.interventions.outbreak writing output... [ 56%] emod_api.interventions.simple_vaccine writing output... [ 58%] emod_api.interventions.utils writing output... [ 60%] emod_api.migration writing output... [ 62%] emod_api.migration.client writing output... [ 63%] emod_api.migration.client.client writing output... [ 65%] emod_api.migration.migration writing output... [ 67%] emod_api.schema writing output... [ 68%] emod_api.schema.dtk_post_process_schema writing output... [ 70%] emod_api.schema.get_schema writing output... [ 72%] emod_api.schema_to_class writing output... [ 74%] emod_api.serialization writing output... [ 75%] emod_api.serialization.CensusAndModPop writing output... [ 77%] emod_api.serialization.SerializedPopulation writing output... [ 79%] emod_api.serialization.dtkFileSupport writing output... [ 81%] emod_api.serialization.dtkFileTools writing output... [ 82%] emod_api.serialization.dtkFileUtility writing output... [ 84%] emod_api.spatialreports writing output... [ 86%] emod_api.spatialreports.spatial writing output... [ 87%] emod_api.tabularoutput writing output... [ 89%] emod_api.weather writing output... [ 91%] emod_api.weather.weather writing output... [ 93%] emod_api_index writing output... [ 94%] faq writing output... [ 96%] glossary writing output... [ 98%] index writing output... [100%] installation generating indices... genindex py-modindexdone writing additional pages... search opensearchdone copying static files... ... done copying extra files... done dumping search index in English (code: en)... done dumping object inventory... done build succeeded. The HTML pages are in _build/html. Updating searchtools for Read the Docs search... [rtd-command-info] start-time: 2022-02-09T01:43:28.371096Z, end-time: 2022-02-09T01:43:36.349394Z, duration: 7, exit-code: 0 python -m sphinx -T -E -W --keep-going -b readthedocssinglehtmllocalmedia -d _build/doctrees -D language=en . _build/localmedia Running Sphinx v3.2.1 rm: cannot remove 'modules.rst': No such file or directory make: [generate-api] Error 1 (ignored) loading translations [en]... done making output directory... done loading intersphinx inventory from https://docs.python.org/3/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emodpy/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/idmtools/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/pycomps/en/latest/objects.inv... building [mo]: targets for 0 po files that are out of date building [readthedocssinglehtmllocalmedia]: all documents updating environment: [new config] 58 added, 0 changed, 0 removed reading sources... [ 1%] emod_api reading sources... [ 3%] emod_api.campaign reading sources... [ 5%] emod_api.channelreports reading sources... [ 6%] emod_api.channelreports.channels reading sources... [ 8%] emod_api.config reading sources... [ 10%] emod_api.config.default_from_schema reading sources... [ 12%] emod_api.config.default_from_schema_no_validation reading sources... [ 13%] emod_api.config.dtk_post_process_adhocevents reading sources... [ 15%] emod_api.config.dtk_pre_process_adhocevents reading sources... [ 17%] emod_api.config.dtk_pre_process_w5ml reading sources... [ 18%] emod_api.config.from_overrides reading sources... [ 20%] emod_api.config.from_poi_and_binary reading sources... [ 22%] emod_api.config.from_schema reading sources... [ 24%] emod_api.config.schema_to_config emod_api.config.schema_to_config is deprecated. Please use emod_api.config.from_schema. reading sources... [ 25%] emod_api.demographics reading sources... [ 27%] emod_api.demographics.BaseInputFile reading sources... [ 29%] emod_api.demographics.Demographics reading sources... [ 31%] emod_api.demographics.DemographicsGenerator reading sources... [ 32%] emod_api.demographics.DemographicsInputDataParsers reading sources... [ 34%] emod_api.demographics.DemographicsTemplates reading sources... [ 36%] emod_api.demographics.Node reading sources... [ 37%] emod_api.demographics.PreDefinedDistributions reading sources... [ 39%] emod_api.demographics.PropertiesAndAttributes reading sources... [ 41%] emod_api.demographics.Updateable reading sources... [ 43%] emod_api.demographics.demographics_utils reading sources... [ 44%] emod_api.demographics.grid_construction reading sources... [ 46%] emod_api.interventions reading sources... [ 48%] emod_api.interventions.common reading sources... [ 50%] emod_api.interventions.import_pressure reading sources... [ 51%] emod_api.interventions.migration reading sources... [ 53%] emod_api.interventions.node_multiplier reading sources... [ 55%] emod_api.interventions.outbreak reading sources... [ 56%] emod_api.interventions.simple_vaccine reading sources... [ 58%] emod_api.interventions.utils reading sources... [ 60%] emod_api.migration reading sources... [ 62%] emod_api.migration.client reading sources... [ 63%] emod_api.migration.client.client reading sources... [ 65%] emod_api.migration.migration reading sources... [ 67%] emod_api.schema reading sources... [ 68%] emod_api.schema.dtk_post_process_schema reading sources... [ 70%] emod_api.schema.get_schema reading sources... [ 72%] emod_api.schema_to_class reading sources... [ 74%] emod_api.serialization reading sources... [ 75%] emod_api.serialization.CensusAndModPop reading sources... [ 77%] emod_api.serialization.SerializedPopulation reading sources... [ 79%] emod_api.serialization.dtkFileSupport reading sources... [ 81%] emod_api.serialization.dtkFileTools reading sources... [ 82%] emod_api.serialization.dtkFileUtility reading sources... [ 84%] emod_api.spatialreports reading sources... [ 86%] emod_api.spatialreports.spatial reading sources... [ 87%] emod_api.tabularoutput reading sources... [ 89%] emod_api.weather reading sources... [ 91%] emod_api.weather.weather reading sources... [ 93%] emod_api_index reading sources... [ 94%] faq reading sources... [ 96%] glossary reading sources... [ 98%] index reading sources... [100%] installation looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done assembling single document... installation faq emod_api_index emod_api emod_api.channelreports emod_api.channelreports.channels emod_api.config emod_api.config.default_from_schema emod_api.config.default_from_schema_no_validation emod_api.config.dtk_post_process_adhocevents emod_api.config.dtk_pre_process_adhocevents emod_api.config.dtk_pre_process_w5ml emod_api.config.from_overrides emod_api.config.from_poi_and_binary emod_api.config.from_schema emod_api.config.schema_to_config emod_api.demographics emod_api.demographics.BaseInputFile emod_api.demographics.Demographics emod_api.demographics.DemographicsGenerator emod_api.demographics.DemographicsInputDataParsers emod_api.demographics.DemographicsTemplates emod_api.demographics.Node emod_api.demographics.PreDefinedDistributions emod_api.demographics.PropertiesAndAttributes emod_api.demographics.Updateable emod_api.demographics.demographics_utils emod_api.demographics.grid_construction emod_api.interventions emod_api.interventions.common emod_api.interventions.import_pressure emod_api.interventions.migration emod_api.interventions.node_multiplier emod_api.interventions.outbreak emod_api.interventions.simple_vaccine emod_api.interventions.utils emod_api.migration emod_api.migration.client emod_api.migration.client.client emod_api.migration.migration emod_api.schema emod_api.schema.dtk_post_process_schema emod_api.schema.get_schema emod_api.serialization emod_api.serialization.CensusAndModPop emod_api.serialization.SerializedPopulation emod_api.serialization.dtkFileSupport emod_api.serialization.dtkFileTools emod_api.serialization.dtkFileUtility emod_api.spatialreports emod_api.spatialreports.spatial emod_api.tabularoutput emod_api.weather emod_api.weather.weather emod_api.campaign emod_api.schema_to_class glossary done writing... done writing additional files... opensearchdone copying static files... ... done copying extra files... done dumping object inventory... done build succeeded. The HTML page is in _build/localmedia. Updating searchtools for Read the Docs search... [rtd-command-info] start-time: 2022-02-09T01:43:36.543884Z, end-time: 2022-02-09T01:43:38.693590Z, duration: 2, exit-code: 0 python -m sphinx -b latex -D language=en -d _build/doctrees . _build/latex Running Sphinx v3.2.1 rm: cannot remove 'modules.rst': No such file or directory make: [generate-api] Error 1 (ignored) loading translations [en]... done making output directory... done loading pickled environment... done building [mo]: targets for 0 po files that are out of date building [latex]: all documents updating environment: 0 added, 1 changed, 0 removed reading sources... [100%] emod_api_index looking for now-outdated files... none found pickling environment... done checking consistency... done processing emod-api-docs.tex... index installation faq emod_api_index emod_api emod_api.channelreports emod_api.channelreports.channels emod_api.config emod_api.config.default_from_schema emod_api.config.default_from_schema_no_validation emod_api.config.dtk_post_process_adhocevents emod_api.config.dtk_pre_process_adhocevents emod_api.config.dtk_pre_process_w5ml emod_api.config.from_overrides emod_api.config.from_poi_and_binary emod_api.config.from_schema emod_api.config.schema_to_config emod_api.demographics emod_api.demographics.BaseInputFile emod_api.demographics.Demographics emod_api.demographics.DemographicsGenerator emod_api.demographics.DemographicsInputDataParsers emod_api.demographics.DemographicsTemplates emod_api.demographics.Node emod_api.demographics.PreDefinedDistributions emod_api.demographics.PropertiesAndAttributes emod_api.demographics.Updateable emod_api.demographics.demographics_utils emod_api.demographics.grid_construction emod_api.interventions emod_api.interventions.common emod_api.interventions.import_pressure emod_api.interventions.migration emod_api.interventions.node_multiplier emod_api.interventions.outbreak emod_api.interventions.simple_vaccine emod_api.interventions.utils emod_api.migration emod_api.migration.client emod_api.migration.client.client emod_api.migration.migration emod_api.schema emod_api.schema.dtk_post_process_schema emod_api.schema.get_schema emod_api.serialization emod_api.serialization.CensusAndModPop emod_api.serialization.SerializedPopulation emod_api.serialization.dtkFileSupport emod_api.serialization.dtkFileTools emod_api.serialization.dtkFileUtility emod_api.spatialreports emod_api.spatialreports.spatial emod_api.tabularoutput emod_api.weather emod_api.weather.weather emod_api.campaign emod_api.schema_to_class glossary resolving references... done writing... done copying TeX support files... copying TeX support files... done build succeeded. The LaTeX files are in _build/latex. Run 'make' in that directory to run these through (pdf)latex (use `make latexpdf' here to do that automatically). WARNING: Missing searchtools: /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/checkouts/latest/docs/_build/latex/_static/searchtools.js [rtd-command-info] start-time: 2022-02-09T01:43:38.990160Z, end-time: 2022-02-09T01:43:39.059320Z, duration: 0, exit-code: 0 cat latexmkrc $latex = 'latex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $pdflatex = 'pdflatex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $lualatex = 'lualatex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $xelatex = 'xelatex --no-pdf ' . $ENV{'LATEXOPTS'} . ' %O %S'; $makeindex = 'makeindex -s python.ist %O -o %D %S'; add_cus_dep( "glo", "gls", 0, "makeglo" ); sub makeglo { return system( "makeindex -s gglo.ist -o '$_[0].gls' '$_[0].glo'" ); } [rtd-command-info] start-time: 2022-02-09T01:43:39.232447Z, end-time: 2022-02-09T01:43:54.273208Z, duration: 15, exit-code: 0 latexmk -r latexmkrc -pdf -f -dvi- -ps- -jobname=institute-for-disease-modeling-emod-api -interaction=nonstopmode Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 1, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 2, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 3, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 4, chunk 1. Subroutine makeglo redefined at (eval 11) line 7, chunk 1. 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s2c.SchemaConfigBuilder( Underfull \hbox (badness 10000) in paragraph at lines 747--747 []\T1/ptm/m/it/10 schema_name=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 schema.json\TS1 /ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 747--747 \T1/ptm/m/it/10 model=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 GENERIC_SIM\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 747--747 \T1/ptm/m/it/10 con-fig_out=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 config.json\TS1/p tm/m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (28.28418pt too wide) in paragraph at lines 758--758 []\T1/ptm/m/it/10 schema_name=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 schema.json\TS1 /ptm/m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (11.09424pt too wide) in paragraph at lines 758--758 \T1/ptm/m/it/10 model=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 GENERIC_SIM\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 758--758 \T1/ptm/m/it/10 con- Underfull \hbox (badness 10000) in paragraph at lines 758--758 \T1/ptm/m/it/10 fig_out=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 config.json\TS1/ptm/m /it/10 '\T1/ptm/m/n/10 , LaTeX Warning: Hyper reference `emod_api.config.from_schema:emod_api.config.fro m_schema.SchemaConfigBuilder' on page 11 undefined on input line 759. [11] Underfull \hbox (badness 10000) in paragraph at lines 801--801 \T1/ptm/m/it/10 name=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Erewhon\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 825--825 []\T1/ptm/m/it/10 tot_pop\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 825--825 \T1/ptm/m/it/10 num_nodes\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 834--834 []\T1/ptm/m/it/10 tot_pop=1000000\T1/ptm/m/n/10 , \T1/ptm/m/it/10 num_nodes=100 \T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 843--843 []\T1/ptm/m/it/10 input_file\T1/ptm/m/n/10 , \T1/ptm/m/it/10 res=0.008333333333 333333\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 851--851 []\T1/ptm/m/it/10 pop_filename_in\T1/ptm/m/n/10 , Overfull \hbox (28.44351pt too wide) in paragraph at lines 851--851 \T1/ptm/m/it/10 pop_filename_out=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 spatial_grid ded_pop_dir\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 857--857 []\T1/ptm/m/it/10 nodes\T1/ptm/m/n/10 , \T1/ptm/m/it/10 idref=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Gridded Underfull \hbox (badness 10000) in paragraph at lines 857--857 \T1/ptm/m/it/10 world grump2.5arcmin\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , LaTeX Warning: Hyper reference `emod_api.demographics.BaseInputFile:emod_api.de mographics.BaseInputFile.BaseInputFile' on page 12 undefined on input line 858. [12] LaTeX Warning: Hyper reference `emod_api.demographics.PropertiesAndAttributes:e mod_api.demographics.PropertiesAndAttributes.IndividualAttributes.MortalityDist ribution' on page 13 undefined on input line 984. Overfull \hbox (149.53976pt too wide) in paragraph at lines 984--984 []\T1/ptm/m/it/10 distribution: \T1/ptm/m/n/10 emod_api.demographics.Properties AndAttributes.IndividualAttributes.MortalityDistribution LaTeX Warning: Hyper reference `emod_api.demographics.PropertiesAndAttributes:e mod_api.demographics.PropertiesAndAttributes.IndividualAttributes.AgeDistributi on' on page 13 undefined on input line 999. Overfull \hbox (94.92032pt too wide) in paragraph at lines 999--999 []\T1/ptm/m/it/10 distribution: \T1/ptm/m/n/10 emod_api.demographics.Properties AndAttributes.IndividualAttributes.AgeDistribution, [13] Underfull \hbox (badness 10000) in paragraph at lines 1070--1070 []\T1/ptm/m/it/10 CrudeBirthRate=0.04\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Crude-Mor - Underfull \hbox (badness 10000) in paragraph at lines 1159--1159 []\T1/ptm/m/it/10 file_male\T1/ptm/m/n/10 , \T1/ptm/m/it/10 file_female\T1/ptm/ m/n/10 , \T1/ptm/m/it/10 in-ter-val_fit=[1970, 1980]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1171--1171 []\T1/ptm/m/it/10 nodes=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1171--1171 \T1/ptm/m/it/10 meta_data: [][]dict[][] Overfull \hbox (7.52411pt too wide) in paragraph at lines 1171--1171 \T1/ptm/m/it/10 ual_attributes=None\T1/ptm/m/n/10 , Overfull \hbox (14.18416pt too wide) in paragraph at lines 1171--1171 \T1/ptm/m/it/10 node_attributes=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1171--1171 \T1/ptm/m/it/10 mor-tal- Overfull \hbox (16.5839pt too wide) in paragraph at lines 1171--1171 \T1/ptm/m/it/10 ity_distribution=None\T1/pcr/m/n/10 ) [14] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pcr.fd) Overfull \hbox (18.60422pt too wide) in paragraph at lines 1232--1232 []\T1/ptm/m/it/10 res_in_arcsec\T1/pcr/m/n/10 ) Overfull \hbox (13.07484pt too wide) in paragraph at lines 1251--1251 []\T1/ptm/m/it/10 nodes\T1/ptm/m/n/10 , Overfull \hbox (5.01491pt too wide) in paragraph at lines 1251--1251 \T1/ptm/m/it/10 con- Overfull \hbox (12.23463pt too wide) in paragraph at lines 1251--1251 \T1/ptm/m/it/10 cerns: Overfull \hbox (2.79494pt too wide) in paragraph at lines 1251--1251 \T1/ptm/m/it/10 Op- Overfull \hbox (457.54115pt too wide) in paragraph at lines 1251--1251 \T1/ptm/m/it/10 tional[Union[emod_api.dtk_tools.demographics.DemographicsGenera torConcern.DemographicsGeneratorConcern, Overfull \hbox (429.49101pt too wide) in paragraph at lines 1251--1251 \T1/ptm/m/it/10 List[emod_api.dtk_tools.demographics.DemographicsGeneratorConce rn.DemographicsGeneratorConcern]]] Underfull \hbox (badness 10000) in paragraph at lines 1251--1251 \T1/ptm/m/it/10 = Overfull \hbox (10.85487pt too wide) in paragraph at lines 1251--1251 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (84.4637pt too wide) in paragraph at lines 1251--1251 \T1/ptm/m/it/10 res_in_arcsec=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 custom\TS1/ptm/ m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (115.46402pt too wide) in paragraph at lines 1251--1251 \T1/ptm/m/it/10 node_id_from_lat_long=False\T1/pcr/m/n/10 ) [15] Underfull \hbox (badness 10000) in paragraph at lines 1336--1336 []\T1/ptm/m/it/10 df\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-mo-graph- Underfull \hbox (badness 10000) in paragraph at lines 1336--1336 \T1/ptm/m/it/10 ics_filename: Op- Underfull \hbox (badness 10000) in paragraph at lines 1336--1336 \T1/ptm/m/it/10 tional[[][]str[][]] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1336--1336 \T1/ptm/m/it/10 con-cerns: Op- Overfull \hbox (379.54115pt too wide) in paragraph at lines 1336--1336 \T1/ptm/m/it/10 tional[Union[emod_api.dtk_tools.demographics.DemographicsGenera torConcern.DemographicsGeneratorConcern, Overfull \hbox (351.49101pt too wide) in paragraph at lines 1336--1336 \T1/ptm/m/it/10 List[emod_api.dtk_tools.demographics.DemographicsGeneratorConce rn.DemographicsGeneratorConcern]]] Underfull \hbox (badness 10000) in paragraph at lines 1336--1336 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Overfull \hbox (6.4637pt too wide) in paragraph at lines 1336--1336 \T1/ptm/m/it/10 res_in_arcsec=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 custom\TS1/ptm/ m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (30.83415pt too wide) in paragraph at lines 1336--1336 \T1/ptm/m/it/10 node_id_from_lat_long=True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1336--1336 \T1/ptm/m/it/10 de-fault_population: Underfull \hbox (badness 10000) in paragraph at lines 1336--1336 [][]\T1/ptm/m/it/10 int[][] = 1000\T1/ptm/m/n/10 , Overfull \hbox (79.21327pt too wide) in paragraph at lines 1336--1336 \T1/ptm/m/it/10 load_other_columns_as_attributes=False\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1336--1336 \T1/ptm/m/it/10 tional[List[[][]str[][]]] Underfull \hbox (badness 10000) in paragraph at lines 1336--1336 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ex- Underfull \hbox (badness 10000) in paragraph at lines 1336--1336 \T1/ptm/m/it/10 clude_columns: Underfull \hbox (badness 10000) in paragraph at lines 1336--1336 \T1/ptm/m/it/10 Op-tional[List[[][]str[][]]] Underfull \hbox (badness 10000) in paragraph at lines 1336--1336 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Overfull \hbox (0.89452pt too wide) in paragraph at lines 1336--1336 \T1/ptm/m/it/10 nodeid_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1336--1336 \T1/ptm/m/it/10 Op-tional[[][]str[][]] Underfull \hbox (badness 10000) in paragraph at lines 1336--1336 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lat-i- Underfull \hbox (badness 10000) in paragraph at lines 1336--1336 \T1/ptm/m/it/10 tude_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1336--1336 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 lat\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lon-gi- Underfull \hbox (badness 10000) in paragraph at lines 1336--1336 \T1/ptm/m/it/10 tude_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1336--1336 \T1/ptm/m/it/10 tion_column_name: [16] Overfull \hbox (54.94496pt too wide) in paragraph at lines 1351--1352 []\T1/pcr/b/n/10 apply. If not specified, we use the DefaultWorldBankEquilibriu mConcern [17] Underfull \hbox (badness 10000) in paragraph at lines 1399--1399 []\T1/ptm/m/it/10 population_input_file: Underfull \hbox (badness 10000) in paragraph at lines 1399--1399 [][]\T1/ptm/m/it/10 str[][]\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-mo-graph- Underfull \hbox (badness 7851) in paragraph at lines 1399--1399 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 con-cerns: Op- Overfull \hbox (349.54115pt too wide) in paragraph at lines 1399--1399 \T1/ptm/m/it/10 tional[Union[emod_api.dtk_tools.demographics.DemographicsGenera torConcern.DemographicsGeneratorConcern, Overfull \hbox (321.49101pt too wide) in paragraph at lines 1399--1399 \T1/ptm/m/it/10 List[emod_api.dtk_tools.demographics.DemographicsGeneratorConce rn.DemographicsGeneratorConcern]]] Underfull \hbox (badness 10000) in paragraph at lines 1399--1399 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1399--1399 \T1/ptm/m/it/10 res_in_arcsec=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 custom\TS1/ptm/ m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (0.83415pt too wide) in paragraph at lines 1399--1399 \T1/ptm/m/it/10 node_id_from_lat_long=True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1399--1399 \T1/ptm/m/it/10 de-fault_population: Underfull \hbox (badness 10000) in paragraph at lines 1399--1399 [][]\T1/ptm/m/it/10 int[][] = 1000\T1/ptm/m/n/10 , Overfull \hbox (49.21327pt too wide) in paragraph at lines 1399--1399 \T1/ptm/m/it/10 load_other_columns_as_attributes=False\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1399--1399 \T1/ptm/m/it/10 in-clude_columns: Op- Underfull \hbox (badness 10000) in paragraph at lines 1399--1399 \T1/ptm/m/it/10 tional[List[[][]str[][]]] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1399--1399 \T1/ptm/m/it/10 ex-clude_columns: Op- Underfull \hbox (badness 10000) in paragraph at lines 1399--1399 \T1/ptm/m/it/10 tional[List[[][]str[][]]] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1399--1399 \T1/ptm/m/it/10 nodeid_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1399--1399 \T1/ptm/m/it/10 Op-tional[[][]str[][]] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1399--1399 \T1/ptm/m/it/10 lat-i-tude_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1399--1399 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 lat\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lon-gi- Underfull \hbox (badness 10000) in paragraph at lines 1399--1399 \T1/ptm/m/it/10 tude_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1399--1399 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 lon\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pop-u-la- Underfull \hbox (badness 6236) in paragraph at lines 1399--1399 \T1/ptm/m/it/10 tion_column_name: [][]str[][] = Overfull \hbox (54.94496pt too wide) in paragraph at lines 1414--1415 []\T1/pcr/b/n/10 apply. If not specified, we use the DefaultWorldBankEquilibriu mConcern [18] Overfull \hbox (6.3048pt too wide) in paragraph at lines 1470--1470 []\T1/ptm/m/it/10 lat\T1/ptm/m/n/10 , Overfull \hbox (13.5249pt too wide) in paragraph at lines 1470--1470 \T1/ptm/m/it/10 long\T1/ptm/m/n/10 , Overfull \hbox (115.34473pt too wide) in paragraph at lines 1470--1470 \T1/ptm/m/it/10 res=0.008333333333333333\T1/pcr/m/n/10 ) Overfull \hbox (37.09444pt too wide) in paragraph at lines 1476--1476 []\T1/ptm/m/it/10 nodelist\T1/pcr/m/n/10 ) Overfull \hbox (11.74474pt too wide) in paragraph at lines 1482--1482 []\T1/ptm/m/it/10 node_info\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1482--1482 \T1/ptm/m/it/10 De- Underfull \hbox (badness 10000) in paragraph at lines 1482--1482 \T1/ptm/m/it/10 moDf\T1/ptm/m/n/10 , Overfull \hbox (91.34473pt too wide) in paragraph at lines 1482--1482 \T1/ptm/m/it/10 res=0.008333333333333333\T1/pcr/m/n/10 ) Overfull \hbox (71.74474pt too wide) in paragraph at lines 1488--1488 []\T1/ptm/m/it/10 node_info\T1/ptm/m/n/10 , Overfull \hbox (41.2549pt too wide) in paragraph at lines 1488--1488 \T1/ptm/m/it/10 ex- Overfull \hbox (118.90427pt too wide) in paragraph at lines 1488--1488 \T1/ptm/m/it/10 tra_data_columns=[]\T1/ptm/m/n/10 , Overfull \hbox (151.34473pt too wide) in paragraph at lines 1488--1488 \T1/ptm/m/it/10 res=0.008333333333333333\T1/pcr/m/n/10 ) [19] Underfull \hbox (badness 10000) in paragraph at lines 1528--1530 []\T1/ptm/m/n/10 json ob-ject aka python dict that can be di-rectly passed to D e-mo-graph- Underfull \hbox (badness 10000) in paragraph at lines 1541--1541 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1541--1541 \T1/ptm/m/it/10 mean=0.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1553--1555 []\T1/ptm/m/n/10 json ob-ject aka python dict that can be di-rectly passed to D e-mo-graph- Underfull \hbox (badness 10000) in paragraph at lines 1566--1566 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1572--1574 []\T1/ptm/m/n/10 json ob-ject aka python dict that can be di-rectly passed to D e-mo-graph- Underfull \hbox (badness 10000) in paragraph at lines 1604--1604 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , \T1/ptm/m/it/10 low_prev\T1/ptm/m/n/10 , Underfull \hbox (badness 5091) in paragraph at lines 1604--1604 \T1/ptm/m/it/10 high_prev\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-scrip- Overfull \hbox (22.30493pt too wide) in paragraph at lines 1616--1616 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Overfull \hbox (7.6847pt too wide) in paragraph at lines 1616--1616 \T1/ptm/m/it/10 set- Overfull \hbox (34.0548pt too wide) in paragraph at lines 1616--1616 \T1/ptm/m/it/10 ting=1.0\T1/pcr/m/n/10 ) Overfull \hbox (10.30493pt too wide) in paragraph at lines 1622--1622 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1622--1622 \T1/ptm/m/it/10 pro- Overfull \hbox (58.54413pt too wide) in paragraph at lines 1622--1622 \T1/ptm/m/it/10 tected_setting=0.0\T1/ptm/m/n/10 , Overfull \hbox (9.20457pt too wide) in paragraph at lines 1622--1622 \T1/ptm/m/it/10 thresh- Overfull \hbox (53.51486pt too wide) in paragraph at lines 1622--1622 \T1/ptm/m/it/10 old_age=1825.0\T1/pcr/m/n/10 ) Overfull \hbox (46.30493pt too wide) in paragraph at lines 1628--1628 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Overfull \hbox (42.23488pt too wide) in paragraph at lines 1628--1628 \T1/ptm/m/it/10 mean- Overfull \hbox (44.91478pt too wide) in paragraph at lines 1628--1628 \T1/ptm/m/it/10 AgeAt- Overfull \hbox (28.90492pt too wide) in paragraph at lines 1628--1628 \T1/ptm/m/it/10 In- Overfull \hbox (32.23474pt too wide) in paragraph at lines 1628--1628 \T1/ptm/m/it/10 fec- Overfull \hbox (58.0548pt too wide) in paragraph at lines 1628--1628 \T1/ptm/m/it/10 tion=2.5\T1/pcr/m/n/10 ) [20] Overfull \hbox (55.80493pt too wide) in paragraph at lines 1634--1634 []\T1/ptm/m/it/10 demog\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1640--1640 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1640--1640 \T1/ptm/m/it/10 age_bins\T1/ptm/m/n/10 , Overfull \hbox (25.80493pt too wide) in paragraph at lines 1662--1662 []\T1/ptm/m/it/10 demog\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1680--1681 []\T1/pcr/b/n/10 "15-19", etc. up to "45-49", and a column named "Years" with LaTeX Warning: Hyper reference `emod_api.demographics.PropertiesAndAttributes:e mod_api.demographics.PropertiesAndAttributes.IndividualAttributes' on page 21 u ndefined on input line 1712. LaTeX Warning: Hyper reference `emod_api.demographics.PropertiesAndAttributes:e mod_api.demographics.PropertiesAndAttributes.IndividualProperties' on page 21 u ndefined on input line 1712. LaTeX Warning: Hyper reference `emod_api.demographics.PropertiesAndAttributes:e mod_api.demographics.PropertiesAndAttributes.NodeAttributes' on page 21 undefin ed on input line 1712. Overfull \hbox (64.51184pt too wide) in paragraph at lines 1712--1712 \T1/ptm/m/n/10 emod_api.demographics.PropertiesAndAttributes.IndividualAttribut es Underfull \hbox (badness 10000) in paragraph at lines 1712--1712 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in-di-vid-ual_properties : Overfull \hbox (65.26187pt too wide) in paragraph at lines 1712--1712 \T1/ptm/m/n/10 emod_api.demographics.PropertiesAndAttributes.IndividualProperti es Underfull \hbox (badness 10000) in paragraph at lines 1712--1712 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 node_attributes: Overfull \hbox (45.31218pt too wide) in paragraph at lines 1712--1712 \T1/ptm/m/n/10 emod_api.demographics.PropertiesAndAttributes.NodeAttributes LaTeX Warning: Hyper reference `emod_api.demographics.Updateable:emod_api.demog raphics.Updateable.Updateable' on page 21 undefined on input line 1713. [21] LaTeX Warning: Hyper reference `emod_api.demographics.Node:emod_api.demographic s.Node.Node' on page 22 undefined on input line 1791. 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LaTeX Warning: Hyper reference `emod_api.demographics.PropertiesAndAttributes:e mod_api.demographics.PropertiesAndAttributes.IndividualProperty' on page 23 und efined on input line 1882. Overfull \hbox (76.12407pt too wide) in paragraph at lines 1882--1882 []\T1/ptm/m/it/10 individual_property: Overfull \hbox (269.15215pt too wide) in paragraph at lines 1882--1882 \T1/ptm/m/n/10 emod_api.demographics.PropertiesAndAttributes.IndividualProperty Underfull \hbox (badness 10000) in paragraph at lines 1882--1882 \T1/ptm/m/it/10 = Overfull \hbox (20.35487pt too wide) in paragraph at lines 1882--1882 \T1/ptm/m/it/10 None\T1/pcr/m/n/10 ) LaTeX Warning: Hyper reference `emod_api.demographics.Updateable:emod_api.demog raphics.Updateable.Updateable' on page 23 undefined on input line 1883. 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[23] Underfull \hbox (badness 10000) in paragraph at lines 1918--1918 []\T1/ptm/m/it/10 distribution_values: List[[][]float[][]] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- LaTeX Warning: Hyper reference `emod_api.demographics.Updateable:emod_api.demog raphics.Updateable.Updateable' on page 24 undefined on input line 1919. Underfull \hbox (badness 10000) in paragraph at lines 1932--1932 []\T1/ptm/m/it/10 distribution_values=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-s ult_scale_factor=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- LaTeX Warning: Hyper reference `emod_api.demographics.Updateable:emod_api.demog raphics.Updateable.Updateable' on page 24 undefined on input line 1933. 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[24] Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 []\T1/ptm/m/it/10 airport: Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 [][]\T1/ptm/m/it/10 int[][] = Overfull \hbox (4.8247pt too wide) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 tude=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Overfull \hbox (0.98447pt too wide) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 birth_rate: Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 [][]\T1/ptm/m/it/10 float[][] = Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 coun- Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 try=None\T1/ptm/m/n/10 , Overfull \hbox (9.42453pt too wide) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 growth_rate: Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 [][]\T1/ptm/m/it/10 float[][] = Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 lat-i-tude: Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 [][]\T1/ptm/m/it/10 float[][] = Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 lon-gi-tude: Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 [][]\T1/ptm/m/it/10 float[][] = Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 meta-data: Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 [][]\T1/ptm/m/it/10 dict[][] = Overfull \hbox (22.25432pt too wide) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 tial_population: Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 [][]\T1/ptm/m/it/10 int[][] = Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 sea-port: Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 [][]\T1/ptm/m/it/10 int[][] = Overfull \hbox (50.58374pt too wide) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 val_habitat_multiplier: Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 List[[][]float[][]] Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 ini- Overfull \hbox (86.9334pt too wide) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 tial_vectors_per_species=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 in-fec-tiv- Overfull \hbox (15.02396pt too wide) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 ity_multiplier: Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 [][]\T1/ptm/m/it/10 float[][] = Overfull \hbox (15.23419pt too wide) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 tra_attributes: Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 [][]\T1/ptm/m/it/10 dict[][] = LaTeX Warning: Hyper reference `emod_api.demographics.Updateable:emod_api.demog raphics.Updateable.Updateable' on page 25 undefined on input line 1988. [25] [26] Underfull \hbox (badness 10000) in paragraph at lines 2058--2059 []\T1/pcr/b/n/10 distribution \T1/ptm/m/n/10 ^^U The se-lected dis-tri-bu-tion (need to come from Underfull \hbox (badness 10000) in paragraph at lines 2078--2078 []\T1/ptm/m/it/10 filename\T1/ptm/m/n/10 , \T1/ptm/m/it/10 dis-tri-bu-tion\T1/p tm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2079--2080 \T1/ptm/m/n/10 Set the \T1/pcr/m/n/10 ImmunityDistributionFlag\T1/ptm/m/n/10 , \T1/pcr/m/n/10 ImmunityDistribution1 \T1/ptm/m/n/10 and Underfull \hbox (badness 10000) in paragraph at lines 2106--2106 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2106--2106 \T1/ptm/m/it/10 fn\T1/ptm/m/n/10 , [27] Underfull \hbox (badness 10000) in paragraph at lines 2176--2176 []\T1/ptm/m/it/10 cb\T1/ptm/m/n/10 , Overfull \hbox (28.70406pt too wide) in paragraph at lines 2176--2176 \T1/ptm/m/it/10 use_existing=False\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 2202--2202 []\T1/ptm/m/it/10 cb\T1/ptm/m/n/10 , Overfull \hbox (34.70406pt too wide) in paragraph at lines 2202--2202 \T1/ptm/m/it/10 use_existing=False\T1/pcr/m/n/10 ) LaTeX Warning: Hyper reference `emod_api.demographics.demographics_utils:emod_a pi.demographics.demographics_utils.set_static_demographics' on page 28 undefine d on input line 2203. [28] Underfull \hbox (badness 10000) in paragraph at lines 2274--2274 []\T1/ptm/m/it/10 point\T1/ptm/m/n/10 , Overfull \hbox (37.41425pt too wide) in paragraph at lines 2274--2274 \T1/ptm/m/it/10 grid_id_2_cell_id\T1/ptm/m/n/10 , LaTeX Warning: Hyper reference `emod_api.schema_to_class:emod_api.schema_to_cla ss.ReadOnlyDict' on page 29 undefined on input line 2306. Underfull \hbox (badness 10000) in paragraph at lines 2315--2315 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Event_Trigger\T1/ptm/m/n /10 , Overfull \hbox (73.22345pt too wide) in paragraph at lines 2315--2315 \T1/ptm/m/it/10 Node_Selection_Type=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 DISTANCE_ ONLY\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (57.50374pt too wide) in paragraph at lines 2315--2315 \T1/ptm/m/it/10 Max_Distance_To_Other_Nodes_Km=- [29] LaTeX Warning: Hyper reference `emod_api.schema_to_class:emod_api.schema_to_cla ss.ReadOnlyDict' on page 30 undefined on input line 2341. 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Underfull \hbox (badness 10000) in paragraph at lines 2414--2414 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Event_Or_Config=\TS1/ptm /m/it/10 '\T1/ptm/m/it/10 Event\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/ 10 Con-fig=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2414--2414 \T1/ptm/m/it/10 Event=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 NoTrigger\TS1/ptm/m/it/ 10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Ten-dency=1.0\T1/ptm/m/n/10 , \T1/ptm/m/it /10 Sin-gle_Use=True\T1/ptm/m/n/10 , [30] LaTeX Warning: Hyper reference `emod_api.schema_to_class:emod_api.schema_to_cla ss.ReadOnlyDict' on page 31 undefined on input line 2449. Underfull \hbox (badness 10000) in paragraph at lines 2458--2458 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Trig-gers\T1/ptm/m/n/10 , \T1/ptm/m/it/10 In-ter-ven-tions\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Prop- Underfull \hbox (badness 10000) in paragraph at lines 2458--2458 \T1/ptm/m/it/10 erty_Restrictions=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 De-mo- Underfull \hbox (badness 10000) in paragraph at lines 2458--2458 \T1/ptm/m/it/10 graphic_Coverage=1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar-get_Ag e_Min=0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar- Underfull \hbox (badness 10000) in paragraph at lines 2458--2458 \T1/ptm/m/it/10 get_Age_Max=45625\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar-get_Gende r=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 All\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/p tm/m/it/10 Tar- Underfull \hbox (badness 10000) in paragraph at lines 2458--2458 \T1/ptm/m/it/10 get_Residents_Only=1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Duration=- 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Black- Underfull \hbox (badness 10000) in paragraph at lines 2458--2458 \T1/ptm/m/it/10 out_Event_Trigger=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Black-ou t_Period=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2458--2458 \T1/ptm/m/it/10 Black-out_On_First_Occurrence=None\T1/ptm/m/n/10 , \T1/ptm/m/it /10 Dis-qual-i-fy- LaTeX Warning: Hyper reference `emod_api.schema_to_class:emod_api.schema_to_cla ss.ReadOnlyDict' on page 31 undefined on input line 2511. Underfull \hbox (badness 10000) in paragraph at lines 2520--2520 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar-get_Property_Key\T1/ ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2520--2520 \T1/ptm/m/it/10 Tar-get_Property_Value\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2520--2520 \T1/ptm/m/it/10 Daily_Probability=1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Max- Underfull \hbox (badness 10000) in paragraph at lines 2520--2520 \T1/ptm/m/it/10 i-mum_Duration=1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Revert=- Underfull \hbox (badness 10000) in paragraph at lines 2520--2520 \T1/ptm/m/it/10 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 In-ter-ven-tion_Name=\TS1/ptm /m/it/10 ''\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2520--2520 \T1/ptm/m/it/10 Event_Trigger_Distributed=\TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , [31] Underfull \hbox (badness 10000) in paragraph at lines 2528--2529 []\T1/pcr/b/n/10 The key part of the new key-value pair of the IP. Underfull \hbox (badness 10000) in paragraph at lines 2531--2532 []\T1/pcr/b/n/10 The value part of the new key-value pair of the IP. Underfull \hbox (badness 10000) in paragraph at lines 2537--2538 []\T1/pcr/b/n/10 The daily probability that an individual will move to the Underfull \hbox (badness 10000) in paragraph at lines 2540--2541 []\T1/pcr/b/n/10 The maximum amount of time individuals have to move Underfull \hbox (badness 10000) in paragraph at lines 2540--2541 \T1/pcr/b/n/10 to a new group. This timing works in conjunction with Underfull \hbox (badness 10000) in paragraph at lines 2543--2544 []\T1/pcr/b/n/10 The number of days before an individual moves back to their Underfull \hbox (badness 10000) in paragraph at lines 2546--2547 []\T1/pcr/b/n/10 Optional Intervention_Name. Useful if managing a replacement Underfull \hbox (badness 10000) in paragraph at lines 2549--2550 []\T1/pcr/b/n/10 Optional broadcast trigger to be published when PVC is Underfull \hbox (badness 10000) in paragraph at lines 2552--2553 []\T1/pcr/b/n/10 Optional broadcast trigger to be published when PVC is LaTeX Warning: Hyper reference `emod_api.schema_to_class:emod_api.schema_to_cla ss.ReadOnlyDict' on page 32 undefined on input line 2561. Underfull \hbox (badness 10000) in paragraph at lines 2570--2570 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Start_Day: [][]int[][]\T 1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2570--2570 \T1/ptm/m/it/10 Node_Ids=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Node- Underfull \hbox (badness 10000) in paragraph at lines 2570--2570 \T1/ptm/m/it/10 set_Config=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Num- Underfull \hbox (badness 10000) in paragraph at lines 2570--2570 \T1/ptm/m/it/10 ber_Repetitions: [][]int[][] = 1\T1/ptm/m/n/10 , Overfull \hbox (4.90335pt too wide) in paragraph at lines 2570--2570 \T1/ptm/m/it/10 Timesteps_Between_Repetitions: Underfull \hbox (badness 10000) in paragraph at lines 2570--2570 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Sched-uled_Campaign_Event\TS1/ptm/m/it/10 '\T 1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2570--2570 \T1/ptm/m/it/10 Prop-erty_Restrictions=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2570--2570 \T1/ptm/m/it/10 = 1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar-get_Age_Min=0\T1/ptm/ m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2570--2570 \T1/ptm/m/it/10 Tar-get_Age_Max=45625\T1/ptm/m/n/10 , [32] LaTeX Warning: Hyper reference `emod_api.schema_to_class:emod_api.schema_to_cla ss.ReadOnlyDict' on page 33 undefined on input line 2628. Underfull \hbox (badness 10000) in paragraph at lines 2637--2637 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Start_Day: [][]int[][]\T 1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2637--2637 \T1/ptm/m/it/10 List[[][]str[][]]\T1/ptm/m/n/10 , \T1/ptm/m/it/10 In-ter-ven-ti on_List: Underfull \hbox (badness 10000) in paragraph at lines 2637--2637 \T1/ptm/m/it/10 List[[][]dict[][]]\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Node_Ids=Non e\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2637--2637 \T1/ptm/m/it/10 Node-set_Config=None\T1/ptm/m/n/10 , Overfull \hbox (17.59343pt too wide) in paragraph at lines 2637--2637 \T1/ptm/m/it/10 Node_Property_Restrictions=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2637--2637 \T1/ptm/m/it/10 Prop-erty_Restrictions=None\T1/ptm/m/n/10 , Overfull \hbox (4.90335pt too wide) in paragraph at lines 2637--2637 \T1/ptm/m/it/10 Timesteps_Between_Repetitions: Underfull \hbox (badness 10000) in paragraph at lines 2637--2637 [][]\T1/ptm/m/it/10 int[][] = - 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 De-mo- Underfull \hbox (badness 10000) in paragraph at lines 2637--2637 \T1/ptm/m/it/10 graphic_Coverage: [][]float[][] Underfull \hbox (badness 10000) in paragraph at lines 2637--2637 \T1/ptm/m/it/10 = 1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar-get_Age_Min=0\T1/ptm/ m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2637--2637 \T1/ptm/m/it/10 Tar-get_Age_Max=45625\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2637--2637 \T1/ptm/m/it/10 Tar-get_Residents_Only=1\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2637--2637 \T1/ptm/m/it/10 Duration=- 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Black- Underfull \hbox (badness 10000) in paragraph at lines 2637--2637 \T1/ptm/m/it/10 Black-out_Period=0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Black- Underfull \hbox (badness 10000) in paragraph at lines 2637--2637 \T1/ptm/m/it/10 out_On_First_Occurrence=0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2637--2637 \T1/ptm/m/it/10 Dis-qual-i-fy- Underfull \hbox (badness 10000) in paragraph at lines 2637--2637 \T1/ptm/m/it/10 ing_Properties=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 De- [33] LaTeX Warning: Hyper reference `emod_api.schema_to_class:emod_api.schema_to_cla ss.ReadOnlyDict' on page 34 undefined on input line 2716. Underfull \hbox (badness 6078) in paragraph at lines 2725--2725 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Base_Sensitivity: [][]fl oat[][] = Underfull \hbox (badness 10000) in paragraph at lines 2725--2725 \T1/ptm/m/it/10 Event_Trigger_Distributed: [][]str[][] Underfull \hbox (badness 10000) in paragraph at lines 2725--2725 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Event_Trigger_Expired: Underfull \hbox (badness 10000) in paragraph at lines 2725--2725 [][]\T1/ptm/m/it/10 str[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Pos-i- Underfull \hbox (badness 10000) in paragraph at lines 2725--2725 \T1/ptm/m/it/10 tive_Diagnosis_Intervention=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2725--2725 \T1/ptm/m/it/10 Pos-i-tive_Diagnosis_Event: Underfull \hbox (badness 10000) in paragraph at lines 2725--2725 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Pos-i-tiveRe-su lt\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Neg-a- Underfull \hbox (badness 10000) in paragraph at lines 2725--2725 \T1/ptm/m/it/10 tive_Diagnosis_Intervention=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2725--2725 \T1/ptm/m/it/10 Neg-a-tive_Diagnosis_Event: Underfull \hbox (badness 10000) in paragraph at lines 2725--2725 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Neg-a-tiveRe-su lt\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Treat- [34] LaTeX Warning: Hyper reference `emod_api.schema_to_class:emod_api.schema_to_cla ss.ReadOnlyDict' on page 35 undefined on input line 2770. Underfull \hbox (badness 10000) in paragraph at lines 2779--2779 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2779--2779 \T1/ptm/m/it/10 trig-ger\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-lay\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2779--2779 \T1/ptm/m/it/10 in-ter-ven-tion\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2779--2779 \T1/ptm/m/it/10 ip_targeting=[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2793--2794 []\T1/pcr/b/n/10 without the distribution, which is inferred. E.g., { Underfull \hbox (badness 10000) in paragraph at lines 2816--2816 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2816--2816 \T1/ptm/m/it/10 new_ip_key\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2816--2816 \T1/ptm/m/it/10 new_ip_value\T1/ptm/m/n/10 , Overfull \hbox (25.72469pt too wide) in paragraph at lines 2816--2816 \T1/ptm/m/it/10 change_age_in_days\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2816--2816 \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 2816--2816 \T1/ptm/m/it/10 vert_in_days\T1/ptm/m/n/10 , Overfull \hbox (8.6443pt too wide) in paragraph at lines 2816--2816 \T1/ptm/m/it/10 ip_targeting_key\T1/ptm/m/n/10 , Overfull \hbox (17.38419pt too wide) in paragraph at lines 2816--2816 \T1/ptm/m/it/10 ip_targeting_value\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2816--2816 \T1/ptm/m/it/10 cov-er- [35] Underfull \hbox (badness 10000) in paragraph at lines 2875--2875 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 nodeto\T1/ptm/m/n/10 , \ T1/ptm/m/it/10 start_day: Underfull \hbox (badness 8056) in paragraph at lines 2875--2875 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age: [][ ]float[][] Underfull \hbox (badness 7851) in paragraph at lines 2875--2875 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar-get_age: [][]dict[][ ] Underfull \hbox (badness 10000) in paragraph at lines 2875--2875 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 nodes_from_ids: Underfull \hbox (badness 10000) in paragraph at lines 2875--2875 \T1/ptm/m/it/10 List[[][]int[][]] = None\T1/ptm/m/n/10 , Overfull \hbox (5.56337pt too wide) in paragraph at lines 2875--2875 \T1/ptm/m/it/10 ind_property_restrictions=None\T1/ptm/m/n/10 , Overfull \hbox (12.22342pt too wide) in paragraph at lines 2875--2875 \T1/ptm/m/it/10 node_property_restrictions=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2875--2875 \T1/ptm/m/it/10 trig-gered_campaign_delay=0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2875--2875 \T1/ptm/m/it/10 trig-ger_condition_list=None\T1/ptm/m/n/10 , [36] Underfull \hbox (badness 10000) in paragraph at lines 2904--2908 []\T1/ptm/m/n/10 {^^PDuration_Before_Leaving_Distribution^^Q:^^QGAUSSIAN_DISTRI BUTION^^Q, Underfull \hbox (badness 10000) in paragraph at lines 2904--2908 \T1/ptm/m/n/10 ^^PDu-ra-tion_Before_Leaving_Gaussian_Mean^^Q: 14, ^^PDu- Underfull \hbox (badness 10000) in paragraph at lines 2904--2908 \T1/ptm/m/n/10 ra-tion_Before_Leaving_Gaussian_Std_Dev^^Q 3} {^^PDu-ra- Underfull \hbox (badness 10000) in paragraph at lines 2904--2908 \T1/ptm/m/n/10 tion_Before_Leaving_Distribution^^Q:^^QPOISSON_DISTRIBUTION^^Q, ^^PDu-ra- Underfull \hbox (badness 10000) in paragraph at lines 2917--2920 []\T1/ptm/m/n/10 {^^PDuration_At_Node_Distribution^^Q:^^QGAUSSIAN_DISTRIBUTION^ ^Q, ^^PDu-ra- Underfull \hbox (badness 10000) in paragraph at lines 2917--2920 \T1/ptm/m/n/10 tion_At_Node_Gaussian_Mean^^Q: 14, ^^PDu-ra-tion_At_Node_Gaussia n_Std_Dev^^Q Underfull \hbox (badness 10000) in paragraph at lines 2917--2920 \T1/ptm/m/n/10 3} {^^PDu-ra-tion_At_Node_Distribution^^Q:^^QPOISSON_DISTRIBUTIO N^^Q, ^^PDu-ra- Overfull \hbox (19.69089pt too wide) in paragraph at lines 2964--2968 \T1/ptm/m/n/10 from emod_api im-port cam-paign as camp dan = {^^PDu-ra-tion_At_ Node_Distribution^^Q:^^QPOISSON_DISTRIBUTION^^Q, Overfull \hbox (57.24088pt too wide) in paragraph at lines 2964--2968 \T1/ptm/m/n/10 ^^PDu-ra-tion_At_Node_Poisson_Mean^^Q 30} dbl = {^^PDu-ra-tion_B efore_Leaving_Distribution^^Q:^^QGAUSSIAN_DISTRIBUTION^^Q, Underfull \hbox (badness 10000) in paragraph at lines 2969--2974 [] [37] Underfull \hbox (badness 10000) in paragraph at lines 2985--2985 \T1/ptm/m/it/10 pro-file=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 CONST\TS1/ptm/m/it/1 0 '\T1/ptm/m/n/10 , ! LaTeX Error: Too deeply nested. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.2994 ...{CONST(ANT)}] \leavevmode\begin{itemize} Underfull \hbox (badness 10000) in paragraph at lines 3056--3056 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day=1\T1/ptm/m/n/1 0 , Underfull \hbox (badness 10000) in paragraph at lines 3056--3056 \T1/ptm/m/it/10 new_infectivity=1.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3056--3056 \T1/ptm/m/it/10 pro-file=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 CONST\TS1/ptm/m/it/1 0 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3056--3056 \T1/ptm/m/it/10 node_ids=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3056--3056 \T1/ptm/m/it/10 re-cur-ring=True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3064--3064 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3075--3075 \T1/ptm/m/it/10 age=0.01\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ig-nore_immunity=None\ T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3084--3084 []\T1/ptm/m/it/10 campaign_builder\T1/ptm/m/n/10 , \T1/ptm/m/it/10 timestep\T1/ ptm/m/n/10 , [38] Underfull \hbox (badness 10000) in paragraph at lines 3118--3118 \T1/ptm/m/it/10 ef-fi-cacy=1.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3118--3118 \T1/ptm/m/it/10 sv_name=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Vaccine\TS1/ptm/m/it/ 10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3118--3118 \T1/ptm/m/it/10 wan-ing_duration=100\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3118--3118 \T1/ptm/m/it/10 d_a_d=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3118--3118 \T1/ptm/m/it/10 cost_to_consumer=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3118--3118 \T1/ptm/m/it/10 e_i_r=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in-ter-ven- Underfull \hbox (badness 10000) in paragraph at lines 3139--3139 []\T1/ptm/m/it/10 timestep\T1/ptm/m/n/10 , \T1/ptm/m/it/10 file- Underfull \hbox (badness 10000) in paragraph at lines 3156--3156 []\T1/ptm/m/it/10 schema_path\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ini-tial=1.0\T1/p tm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3156--3156 \T1/ptm/m/it/10 box_duration=365\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de- [39] [40] Underfull \hbox (badness 5548) in paragraph at lines 3263--3266 []\T1/ptm/m/n/10 EMOD/DTK for-mat mi-gra-tion files (and as-so-ci-ated meta-dat a files) can be writ-ten with mi-gra- [41] Underfull \hbox (badness 10000) in paragraph at lines 3529--3529 \T1/ptm/m/it/10 num_nodes=100\T1/ptm/m/n/10 , \T1/ptm/m/it/10 mig_factor=1.0\T1 /ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3529--3529 \T1/ptm/m/it/10 frac_rural=0.3\T1/ptm/m/n/10 , \T1/ptm/m/it/10 id_ref=\TS1/ptm/ m/it/10 '\T1/ptm/m/it/10 from_params\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm/ m/it/10 mi- LaTeX Warning: Hyper reference `emod_api.migration.migration:emod_api.migration .migration.Migration' on page 42 undefined on input line 3540. 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LaTeX Warning: Hyper reference `emod_api.serialization.dtkFileTools:emod_api.se rialization.dtkFileTools.DtkFile' on page 47 undefined on input line 4107. [47] LaTeX Warning: Hyper reference `emod_api.serialization.dtkFileTools:emod_api.se rialization.dtkFileTools.DtkFileV3' on page 48 undefined on input line 4129. Underfull \hbox (badness 10000) in paragraph at lines 4188--4188 \T1/ptm/m/it/10 List[[][]int[][]] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 data: Underfull \hbox (badness 10000) in paragraph at lines 4188--4188 \T1/ptm/m/it/10 numpy.array = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start: [48] [49] [50] [51] [52] Chapter 4. [53] [54] LaTeX Warning: Reference `emod_api:module-emod_api' on page 55 undefined on inp ut line 4721. LaTeX Warning: Reference `emod_api.campaign:module-emod_api.campaign' on page 5 5 undefined on input line 4722. LaTeX Warning: Reference `emod_api.channelreports:module-emod_api.channelreport s' on page 55 undefined on input line 4723. 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LaTeX Warning: Reference `emod_api.weather.weather:module-emod_api.weather.weat her' on page 55 undefined on input line 4773. [55] No file institute-for-disease-modeling-emod-api.ind. (./institute-for-disease-modeling-emod-api.aux) Package rerunfilecheck Warning: File `institute-for-disease-modeling-emod-api.o ut' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc}< /usr/share/texlive/texmf-dist/fonts/type1/urw/courier/ucrr8a.pfb>< /usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmri8a.pfb> Output written on institute-for-disease-modeling-emod-api.pdf (59 pages, 261718 bytes). Transcript written on institute-for-disease-modeling-emod-api.log. Latexmk: Index file 'institute-for-disease-modeling-emod-api.idx' was written Latexmk: Missing input file: 'institute-for-disease-modeling-emod-api.ind' from line 'No file institute-for-disease-modeling-emod-api.ind.' Latexmk: References changed. Latexmk: References changed. Latexmk: Log file says output to 'institute-for-disease-modeling-emod-api.pdf' Latexmk: Log file says output to 'institute-for-disease-modeling-emod-api.pdf' Latexmk: List of undefined refs and citations: Reference `emod_api.campaign:module-emod_api.campaign' on page 55 undefined on input line 4722 Reference `emod_api.channelreports.channels:module-emod_api.channelreports.channels' on page 55 undefined on input line 4724 Reference `emod_api.channelreports:module-emod_api.channelreports' on page 55 undefined on input line 4723 Reference `emod_api.config.default_from_schema:module-emod_api.config.default_from_schema' on page 55 undefined on input line 4726 Reference `emod_api.config.default_from_schema_no_validation:module-emod_api.config.default_from_schema_no_validation' on page 55 undefined on input line 4727 Reference `emod_api.config.dtk_post_process_adhocevents:module-emod_api.config.dtk_post_process_adhocevents' on page 55 undefined on input line 4728 Reference `emod_api.config.dtk_pre_process_adhocevents:module-emod_api.config.dtk_pre_process_adhocevents' on page 55 undefined on input line 4729 Reference `emod_api.config.dtk_pre_process_w5ml:module-emod_api.config.dtk_pre_process_w5ml' on page 55 undefined on input line 4730 Reference `emod_api.config.from_overrides:module-emod_api.config.from_overrides' on page 55 undefined on input line 4731 Reference `emod_api.config.from_poi_and_binary:module-emod_api.config.from_poi_and_binary' on page 55 undefined on input line 4732 Reference `emod_api.config.from_schema:module-emod_api.config.from_schema' on page 55 undefined on input line 4733 Reference `emod_api.config.schema_to_config:module-emod_api.config.schema_to_config' on page 55 undefined on input line 4734 Reference `emod_api.config:module-emod_api.config' on page 55 undefined on input line 4725 Reference `emod_api.demographics.BaseInputFile:module-emod_api.demographics.BaseInputFile' on page 55 undefined on input line 4736 Reference `emod_api.demographics.Demographics:module-emod_api.demographics.Demographics' on page 55 undefined on input line 4737 Reference `emod_api.demographics.DemographicsGenerator:module-emod_api.demographics.DemographicsGenerator' on page 55 undefined on input line 4739 Reference `emod_api.demographics.DemographicsInputDataParsers:module-emod_api.demographics.DemographicsInputDataParsers' on page 55 undefined on input line 4740 Reference `emod_api.demographics.DemographicsTemplates:module-emod_api.demographics.DemographicsTemplates' on page 55 undefined on input line 4741 Reference `emod_api.demographics.Node:module-emod_api.demographics.Node' on page 55 undefined on input line 4743 Reference `emod_api.demographics.PreDefinedDistributions:module-emod_api.demographics.PreDefinedDistributions' on page 55 undefined on input line 4744 Reference `emod_api.demographics.PropertiesAndAttributes:module-emod_api.demographics.PropertiesAndAttributes' on page 55 undefined on input line 4745 Reference `emod_api.demographics.Updateable:module-emod_api.demographics.Updateable' on page 55 undefined on input line 4746 Reference `emod_api.demographics.demographics_utils:module-emod_api.demographics.demographics_utils' on page 55 undefined on input line 4738 Reference `emod_api.demographics.grid_construction:module-emod_api.demographics.grid_construction' on page 55 undefined on input line 4742 Reference `emod_api.demographics:module-emod_api.demographics' on page 55 undefined on input line 4735 Reference `emod_api.interventions.common:module-emod_api.interventions.common' on page 55 undefined on input line 4748 Reference `emod_api.interventions.import_pressure:module-emod_api.interventions.import_pressure' on page 55 undefined on input line 4749 Reference `emod_api.interventions.migration:module-emod_api.interventions.migration' on page 55 undefined on input line 4750 Reference `emod_api.interventions.node_multiplier:module-emod_api.interventions.node_multiplier' on page 55 undefined on 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etc: Non-existent destination files: 'institute-for-disease-modeling-emod-api.ind' ------------ Run number 1 of rule 'makeindex institute-for-disease-modeling-emod-api.idx' ------------ ------------ Running 'makeindex -s python.ist -o "institute-for-disease-modeling-emod-api.ind" "institute-for-disease-modeling-emod-api.idx"' ------------ Latexmk: applying rule 'makeindex institute-for-disease-modeling-emod-api.idx'... This is makeindex, version 2.15 [TeX Live 2017] (kpathsea + Thai support). Scanning style file ./python.ist.......done (7 attributes redefined, 0 ignored). Scanning input file institute-for-disease-modeling-emod-api.idx....done (479 entries accepted, 0 rejected). Sorting entries......done (4461 comparisons). Generating output file institute-for-disease-modeling-emod-api.ind....done (914 lines written, 0 warnings). Output written in institute-for-disease-modeling-emod-api.ind. Transcript written in institute-for-disease-modeling-emod-api.ilg. Rule 'pdflatex': File changes, etc: Changed files, or newly in use since previous run(s): 'institute-for-disease-modeling-emod-api.aux' 'institute-for-disease-modeling-emod-api.ind' ------------ Run number 2 of rule 'pdflatex' ------------ ------------ Running 'pdflatex -interaction=nonstopmode -recorder --jobname="institute-for-disease-modeling-emod-api" "emod-api-docs.tex"' ------------ Latexmk: applying rule 'pdflatex'... 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paragraph at lines 851--851 \T1/ptm/m/it/10 pop_filename_out=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 spatial_grid ded_pop_dir\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 857--857 []\T1/ptm/m/it/10 nodes\T1/ptm/m/n/10 , \T1/ptm/m/it/10 idref=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Gridded Underfull \hbox (badness 10000) in paragraph at lines 857--857 \T1/ptm/m/it/10 world grump2.5arcmin\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , [12] Overfull \hbox (149.53976pt too wide) in paragraph at lines 984--984 []\T1/ptm/m/it/10 distribution: [][]\T1/ptm/m/n/10 emod_api.demographics.Proper tiesAndAttributes.IndividualAttributes.MortalityDistribution[][] Overfull \hbox (94.92032pt too wide) in paragraph at lines 999--999 []\T1/ptm/m/it/10 distribution: [][]\T1/ptm/m/n/10 emod_api.demographics.Proper tiesAndAttributes.IndividualAttributes.AgeDistribution[][], [13] Underfull \hbox (badness 10000) in paragraph at lines 1070--1070 []\T1/ptm/m/it/10 CrudeBirthRate=0.04\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Crude-Mor - Underfull \hbox (badness 10000) in paragraph at lines 1159--1159 []\T1/ptm/m/it/10 file_male\T1/ptm/m/n/10 , \T1/ptm/m/it/10 file_female\T1/ptm/ m/n/10 , \T1/ptm/m/it/10 in-ter-val_fit=[1970, 1980]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1171--1171 []\T1/ptm/m/it/10 nodes=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1171--1171 \T1/ptm/m/it/10 meta_data: [][]dict[][] Overfull \hbox (7.52411pt too wide) in paragraph at lines 1171--1171 \T1/ptm/m/it/10 ual_attributes=None\T1/ptm/m/n/10 , Overfull \hbox (14.18416pt too wide) in paragraph at lines 1171--1171 \T1/ptm/m/it/10 node_attributes=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1171--1171 \T1/ptm/m/it/10 mor-tal- Overfull \hbox (16.5839pt too wide) in paragraph at lines 1171--1171 \T1/ptm/m/it/10 ity_distribution=None\T1/pcr/m/n/10 ) [14] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pcr.fd) Overfull \hbox (18.60422pt too wide) in paragraph at lines 1232--1232 []\T1/ptm/m/it/10 res_in_arcsec\T1/pcr/m/n/10 ) Overfull \hbox (13.07484pt too wide) in paragraph at lines 1251--1251 []\T1/ptm/m/it/10 nodes\T1/ptm/m/n/10 , Overfull \hbox (5.01491pt too wide) in paragraph at lines 1251--1251 \T1/ptm/m/it/10 con- Overfull \hbox (12.23463pt too wide) in paragraph at lines 1251--1251 \T1/ptm/m/it/10 cerns: Overfull \hbox (2.79494pt too wide) in paragraph at lines 1251--1251 \T1/ptm/m/it/10 Op- Overfull \hbox (457.54115pt too wide) in paragraph at lines 1251--1251 \T1/ptm/m/it/10 tional[Union[emod_api.dtk_tools.demographics.DemographicsGenera torConcern.DemographicsGeneratorConcern, Overfull \hbox (429.49101pt too wide) in paragraph at lines 1251--1251 \T1/ptm/m/it/10 List[emod_api.dtk_tools.demographics.DemographicsGeneratorConce rn.DemographicsGeneratorConcern]]] Underfull \hbox (badness 10000) in paragraph at lines 1251--1251 \T1/ptm/m/it/10 = Overfull \hbox (10.85487pt too wide) in paragraph at lines 1251--1251 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (84.4637pt too wide) in paragraph at lines 1251--1251 \T1/ptm/m/it/10 res_in_arcsec=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 custom\TS1/ptm/ m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (115.46402pt too wide) in paragraph at lines 1251--1251 \T1/ptm/m/it/10 node_id_from_lat_long=False\T1/pcr/m/n/10 ) [15] Underfull \hbox (badness 10000) in paragraph at lines 1336--1336 []\T1/ptm/m/it/10 df\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-mo-graph- Underfull \hbox (badness 10000) in paragraph at lines 1336--1336 \T1/ptm/m/it/10 ics_filename: Op- Underfull \hbox (badness 10000) in paragraph at lines 1336--1336 \T1/ptm/m/it/10 tional[[][]str[][]] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1336--1336 \T1/ptm/m/it/10 con-cerns: Op- Overfull \hbox (379.54115pt too wide) in paragraph at lines 1336--1336 \T1/ptm/m/it/10 tional[Union[emod_api.dtk_tools.demographics.DemographicsGenera torConcern.DemographicsGeneratorConcern, Overfull \hbox (351.49101pt too wide) in paragraph at lines 1336--1336 \T1/ptm/m/it/10 List[emod_api.dtk_tools.demographics.DemographicsGeneratorConce rn.DemographicsGeneratorConcern]]] Underfull \hbox (badness 10000) in paragraph at lines 1336--1336 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Overfull \hbox (6.4637pt too wide) in paragraph at lines 1336--1336 \T1/ptm/m/it/10 res_in_arcsec=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 custom\TS1/ptm/ m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (30.83415pt too wide) in paragraph at lines 1336--1336 \T1/ptm/m/it/10 node_id_from_lat_long=True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1336--1336 \T1/ptm/m/it/10 de-fault_population: Underfull \hbox (badness 10000) in paragraph at lines 1336--1336 [][]\T1/ptm/m/it/10 int[][] = 1000\T1/ptm/m/n/10 , Overfull \hbox (79.21327pt too wide) in paragraph at lines 1336--1336 \T1/ptm/m/it/10 load_other_columns_as_attributes=False\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1336--1336 \T1/ptm/m/it/10 tional[List[[][]str[][]]] Underfull \hbox (badness 10000) in paragraph at lines 1336--1336 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ex- Underfull \hbox (badness 10000) in paragraph at lines 1336--1336 \T1/ptm/m/it/10 clude_columns: Underfull \hbox (badness 10000) in paragraph at lines 1336--1336 \T1/ptm/m/it/10 Op-tional[List[[][]str[][]]] Underfull \hbox (badness 10000) in paragraph at lines 1336--1336 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Overfull \hbox (0.89452pt too wide) in paragraph at lines 1336--1336 \T1/ptm/m/it/10 nodeid_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1336--1336 \T1/ptm/m/it/10 Op-tional[[][]str[][]] Underfull \hbox (badness 10000) in paragraph at lines 1336--1336 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lat-i- Underfull \hbox (badness 10000) in paragraph at lines 1336--1336 \T1/ptm/m/it/10 tude_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1336--1336 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 lat\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lon-gi- Underfull \hbox (badness 10000) in paragraph at lines 1336--1336 \T1/ptm/m/it/10 tude_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1336--1336 \T1/ptm/m/it/10 tion_column_name: [16] Overfull \hbox (54.94496pt too wide) in paragraph at lines 1351--1352 []\T1/pcr/b/n/10 apply. If not specified, we use the DefaultWorldBankEquilibriu mConcern [17] Underfull \hbox (badness 10000) in paragraph at lines 1399--1399 []\T1/ptm/m/it/10 population_input_file: Underfull \hbox (badness 10000) in paragraph at lines 1399--1399 [][]\T1/ptm/m/it/10 str[][]\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-mo-graph- Underfull \hbox (badness 7851) in paragraph at lines 1399--1399 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 con-cerns: Op- Overfull \hbox (349.54115pt too wide) in paragraph at lines 1399--1399 \T1/ptm/m/it/10 tional[Union[emod_api.dtk_tools.demographics.DemographicsGenera torConcern.DemographicsGeneratorConcern, Overfull \hbox (321.49101pt too wide) in paragraph at lines 1399--1399 \T1/ptm/m/it/10 List[emod_api.dtk_tools.demographics.DemographicsGeneratorConce rn.DemographicsGeneratorConcern]]] Underfull \hbox (badness 10000) in paragraph at lines 1399--1399 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1399--1399 \T1/ptm/m/it/10 res_in_arcsec=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 custom\TS1/ptm/ m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (0.83415pt too wide) in paragraph at lines 1399--1399 \T1/ptm/m/it/10 node_id_from_lat_long=True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1399--1399 \T1/ptm/m/it/10 de-fault_population: Underfull \hbox (badness 10000) in paragraph at lines 1399--1399 [][]\T1/ptm/m/it/10 int[][] = 1000\T1/ptm/m/n/10 , Overfull \hbox (49.21327pt too wide) in paragraph at lines 1399--1399 \T1/ptm/m/it/10 load_other_columns_as_attributes=False\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1399--1399 \T1/ptm/m/it/10 in-clude_columns: Op- Underfull \hbox (badness 10000) in paragraph at lines 1399--1399 \T1/ptm/m/it/10 tional[List[[][]str[][]]] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1399--1399 \T1/ptm/m/it/10 ex-clude_columns: Op- Underfull \hbox (badness 10000) in paragraph at lines 1399--1399 \T1/ptm/m/it/10 tional[List[[][]str[][]]] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1399--1399 \T1/ptm/m/it/10 nodeid_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1399--1399 \T1/ptm/m/it/10 Op-tional[[][]str[][]] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1399--1399 \T1/ptm/m/it/10 lat-i-tude_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1399--1399 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 lat\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lon-gi- Underfull \hbox (badness 10000) in paragraph at lines 1399--1399 \T1/ptm/m/it/10 tude_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1399--1399 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 lon\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pop-u-la- Underfull \hbox (badness 6236) in paragraph at lines 1399--1399 \T1/ptm/m/it/10 tion_column_name: [][]str[][] = Overfull \hbox (54.94496pt too wide) in paragraph at lines 1414--1415 []\T1/pcr/b/n/10 apply. If not specified, we use the DefaultWorldBankEquilibriu mConcern [18] Overfull \hbox (6.3048pt too wide) in paragraph at lines 1470--1470 []\T1/ptm/m/it/10 lat\T1/ptm/m/n/10 , Overfull \hbox (13.5249pt too wide) in paragraph at lines 1470--1470 \T1/ptm/m/it/10 long\T1/ptm/m/n/10 , Overfull \hbox (115.34473pt too wide) in paragraph at lines 1470--1470 \T1/ptm/m/it/10 res=0.008333333333333333\T1/pcr/m/n/10 ) Overfull \hbox (37.09444pt too wide) in paragraph at lines 1476--1476 []\T1/ptm/m/it/10 nodelist\T1/pcr/m/n/10 ) Overfull \hbox (11.74474pt too wide) in paragraph at lines 1482--1482 []\T1/ptm/m/it/10 node_info\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1482--1482 \T1/ptm/m/it/10 De- Underfull \hbox (badness 10000) in paragraph at lines 1482--1482 \T1/ptm/m/it/10 moDf\T1/ptm/m/n/10 , Overfull \hbox (91.34473pt too wide) in paragraph at lines 1482--1482 \T1/ptm/m/it/10 res=0.008333333333333333\T1/pcr/m/n/10 ) Overfull \hbox (71.74474pt too wide) in paragraph at lines 1488--1488 []\T1/ptm/m/it/10 node_info\T1/ptm/m/n/10 , Overfull \hbox (41.2549pt too wide) in paragraph at lines 1488--1488 \T1/ptm/m/it/10 ex- Overfull \hbox (118.90427pt too wide) in paragraph at lines 1488--1488 \T1/ptm/m/it/10 tra_data_columns=[]\T1/ptm/m/n/10 , Overfull \hbox (151.34473pt too wide) in paragraph at lines 1488--1488 \T1/ptm/m/it/10 res=0.008333333333333333\T1/pcr/m/n/10 ) [19] Underfull \hbox (badness 10000) in paragraph at lines 1528--1530 []\T1/ptm/m/n/10 json ob-ject aka python dict that can be di-rectly passed to D e-mo-graph- Underfull \hbox (badness 10000) in paragraph at lines 1541--1541 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1541--1541 \T1/ptm/m/it/10 mean=0.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1553--1555 []\T1/ptm/m/n/10 json ob-ject aka python dict that can be di-rectly passed to D e-mo-graph- Underfull \hbox (badness 10000) in paragraph at lines 1566--1566 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1572--1574 []\T1/ptm/m/n/10 json ob-ject aka python dict that can be di-rectly passed to D e-mo-graph- Underfull \hbox (badness 10000) in paragraph at lines 1604--1604 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , \T1/ptm/m/it/10 low_prev\T1/ptm/m/n/10 , Underfull \hbox (badness 5091) in paragraph at lines 1604--1604 \T1/ptm/m/it/10 high_prev\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-scrip- Overfull \hbox (22.30493pt too wide) in paragraph at lines 1616--1616 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Overfull \hbox (7.6847pt too wide) in paragraph at lines 1616--1616 \T1/ptm/m/it/10 set- Overfull \hbox (34.0548pt too wide) in paragraph at lines 1616--1616 \T1/ptm/m/it/10 ting=1.0\T1/pcr/m/n/10 ) Overfull \hbox (10.30493pt too wide) in paragraph at lines 1622--1622 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1622--1622 \T1/ptm/m/it/10 pro- Overfull \hbox (58.54413pt too wide) in paragraph at lines 1622--1622 \T1/ptm/m/it/10 tected_setting=0.0\T1/ptm/m/n/10 , Overfull \hbox (9.20457pt too wide) in paragraph at lines 1622--1622 \T1/ptm/m/it/10 thresh- Overfull \hbox (53.51486pt too wide) in paragraph at lines 1622--1622 \T1/ptm/m/it/10 old_age=1825.0\T1/pcr/m/n/10 ) Overfull \hbox (46.30493pt too wide) in paragraph at lines 1628--1628 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Overfull \hbox (42.23488pt too wide) in paragraph at lines 1628--1628 \T1/ptm/m/it/10 mean- Overfull \hbox (44.91478pt too wide) in paragraph at lines 1628--1628 \T1/ptm/m/it/10 AgeAt- Overfull \hbox (28.90492pt too wide) in paragraph at lines 1628--1628 \T1/ptm/m/it/10 In- Overfull \hbox (32.23474pt too wide) in paragraph at lines 1628--1628 \T1/ptm/m/it/10 fec- Overfull \hbox (58.0548pt too wide) in paragraph at lines 1628--1628 \T1/ptm/m/it/10 tion=2.5\T1/pcr/m/n/10 ) [20] Overfull \hbox (55.80493pt too wide) in paragraph at lines 1634--1634 []\T1/ptm/m/it/10 demog\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1640--1640 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1640--1640 \T1/ptm/m/it/10 age_bins\T1/ptm/m/n/10 , Overfull \hbox (25.80493pt too wide) in paragraph at lines 1662--1662 []\T1/ptm/m/it/10 demog\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1680--1681 []\T1/pcr/b/n/10 "15-19", etc. up to "45-49", and a column named "Years" with Overfull \hbox (64.51184pt too wide) in paragraph at lines 1712--1712 [][]\T1/ptm/m/n/10 emod_api.demographics.PropertiesAndAttributes.IndividualAttr ibutes[][] Underfull \hbox (badness 10000) in paragraph at lines 1712--1712 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in-di-vid-ual_properties : Overfull \hbox (65.26187pt too wide) in paragraph at lines 1712--1712 [][]\T1/ptm/m/n/10 emod_api.demographics.PropertiesAndAttributes.IndividualProp erties[][] Underfull \hbox (badness 10000) in paragraph at lines 1712--1712 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 node_attributes: Overfull \hbox (45.31218pt too wide) in paragraph at lines 1712--1712 [][]\T1/ptm/m/n/10 emod_api.demographics.PropertiesAndAttributes.NodeAttributes [][] [21] Overfull \hbox (22.9045pt too wide) in paragraph at lines 1806--1806 []\T1/ptm/m/it/10 nodeid\T1/ptm/m/n/10 , \T1/ptm/m/it/10 res_in_deg=0.041666666 666666664\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1812--1812 []\T1/ptm/m/it/10 lat\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lon\T1/ptm/m/n/10 , Overfull \hbox (9.16464pt too wide) in paragraph at lines 1812--1812 \T1/ptm/m/it/10 res_in_deg=0.041666666666666664\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1818--1818 []\T1/ptm/m/it/10 lat\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lon\T1/ptm/m/n/10 , Overfull \hbox (45.7243pt too wide) in paragraph at lines 1839--1839 []\T1/ptm/m/it/10 distribution\T1/pcr/m/n/10 ) [22] Overfull \hbox (59.95372pt too wide) in paragraph at lines 1868--1868 []\T1/ptm/m/it/10 initial_distribution: Overfull \hbox (21.8143pt too wide) in paragraph at lines 1868--1868 \T1/ptm/m/it/10 List[[][]float[][]] Underfull \hbox (badness 10000) in paragraph at lines 1868--1868 \T1/ptm/m/it/10 = Overfull \hbox (4.85487pt too wide) in paragraph at lines 1868--1868 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (3.0149pt too wide) in paragraph at lines 1868--1868 \T1/ptm/m/it/10 prop- Overfull \hbox (27.15454pt too wide) in paragraph at lines 1868--1868 \T1/ptm/m/it/10 erty=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1868--1868 \T1/ptm/m/it/10 val- Underfull \hbox (badness 10000) in paragraph at lines 1868--1868 \T1/ptm/m/it/10 ues: Overfull \hbox (21.8143pt too wide) in paragraph at lines 1868--1868 \T1/ptm/m/it/10 List[[][]float[][]] Underfull \hbox (badness 10000) in paragraph at lines 1868--1868 \T1/ptm/m/it/10 = Overfull \hbox (4.85487pt too wide) in paragraph at lines 1868--1868 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (1.09485pt too wide) in paragraph at lines 1868--1868 \T1/ptm/m/it/10 tran- Underfull \hbox (badness 10000) in paragraph at lines 1868--1868 \T1/ptm/m/it/10 si- Overfull \hbox (4.02464pt too wide) in paragraph at lines 1868--1868 \T1/ptm/m/it/10 tions: Overfull \hbox (21.8143pt too wide) in paragraph at lines 1868--1868 \T1/ptm/m/it/10 List[[][]float[][]] Underfull \hbox (badness 10000) in paragraph at lines 1868--1868 \T1/ptm/m/it/10 = Overfull \hbox (4.85487pt too wide) in paragraph at lines 1868--1868 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (4.98474pt too wide) in paragraph at lines 1868--1868 \T1/ptm/m/it/10 trans- Underfull \hbox (badness 10000) in paragraph at lines 1868--1868 \T1/ptm/m/it/10 mis- Overfull \hbox (32.35434pt too wide) in paragraph at lines 1868--1868 \T1/ptm/m/it/10 sion_matrix: Overfull \hbox (21.8143pt too wide) in paragraph at lines 1868--1868 \T1/ptm/m/it/10 List[[][]float[][]] Underfull \hbox (badness 10000) in paragraph at lines 1868--1868 \T1/ptm/m/it/10 = Overfull \hbox (8.35487pt too wide) in paragraph at lines 1868--1868 \T1/ptm/m/it/10 None\T1/pcr/m/n/10 ) Overfull \hbox (76.12407pt too wide) in paragraph at lines 1882--1882 []\T1/ptm/m/it/10 individual_property: Overfull \hbox (269.15215pt too wide) in paragraph at lines 1882--1882 [][]\T1/ptm/m/n/10 emod_api.demographics.PropertiesAndAttributes.IndividualProp erty[][] Underfull \hbox (badness 10000) in paragraph at lines 1882--1882 \T1/ptm/m/it/10 = Overfull \hbox (20.35487pt too wide) in paragraph at lines 1882--1882 \T1/ptm/m/it/10 None\T1/pcr/m/n/10 ) Overfull \hbox (109.22414pt too wide) in paragraph at lines 1913--1913 []\T1/ptm/m/it/10 age_distribution_flag=None\T1/ptm/m/n/10 , Overfull \hbox (94.32413pt too wide) in paragraph at lines 1913--1913 \T1/ptm/m/it/10 age_distribution1=None\T1/ptm/m/n/10 , Overfull \hbox (94.32413pt too wide) in paragraph at lines 1913--1913 \T1/ptm/m/it/10 age_distribution2=None\T1/ptm/m/n/10 , Overfull \hbox (89.32413pt too wide) in paragraph at lines 1913--1913 \T1/ptm/m/it/10 age_distribution=None\T1/ptm/m/n/10 , Overfull \hbox (18.82483pt too wide) in paragraph at lines 1913--1913 \T1/ptm/m/it/10 preva- Overfull \hbox (116.0839pt too wide) in paragraph at lines 1913--1913 \T1/ptm/m/it/10 lence_distribution_flag=None\T1/ptm/m/n/10 , Overfull \hbox (18.82483pt too wide) in paragraph at lines 1913--1913 \T1/ptm/m/it/10 preva- Overfull \hbox (101.18388pt too wide) in paragraph at lines 1913--1913 \T1/ptm/m/it/10 lence_distribution1=None\T1/ptm/m/n/10 , Overfull \hbox (18.82483pt too wide) in paragraph at lines 1913--1913 \T1/ptm/m/it/10 preva- Overfull \hbox (101.18388pt too wide) in paragraph at lines 1913--1913 \T1/ptm/m/it/10 lence_distribution2=None\T1/ptm/m/n/10 , Overfull \hbox (6.57483pt too wide) in paragraph at lines 1913--1913 \T1/ptm/m/it/10 im- Overfull \hbox (8.79494pt too wide) in paragraph at lines 1913--1913 \T1/ptm/m/it/10 mu- Overfull \hbox (109.9839pt too wide) in paragraph at lines 1913--1913 \T1/ptm/m/it/10 nity_distribution_flag=None\T1/ptm/m/n/10 , Overfull \hbox (6.57483pt too wide) in paragraph at lines 1913--1913 \T1/ptm/m/it/10 im- Overfull \hbox (8.79494pt too wide) in paragraph at lines 1913--1913 \T1/ptm/m/it/10 mu- Overfull \hbox (95.0839pt too wide) in paragraph at lines 1913--1913 \T1/ptm/m/it/10 nity_distribution1=None\T1/ptm/m/n/10 , Overfull \hbox (6.57483pt too wide) in paragraph at lines 1913--1913 \T1/ptm/m/it/10 im- Overfull \hbox (8.79494pt too wide) in paragraph at lines 1913--1913 \T1/ptm/m/it/10 mu- Overfull \hbox (95.0839pt too wide) in paragraph at lines 1913--1913 \T1/ptm/m/it/10 nity_distribution2=None\T1/ptm/m/n/10 , Overfull \hbox (109.9838pt too wide) in paragraph at lines 1913--1913 \T1/ptm/m/it/10 risk_distribution_flag=None\T1/ptm/m/n/10 , Overfull \hbox (95.08379pt too wide) in paragraph at lines 1913--1913 \T1/ptm/m/it/10 risk_distribution1=None\T1/ptm/m/n/10 , Overfull \hbox (95.08379pt too wide) in paragraph at lines 1913--1913 \T1/ptm/m/it/10 risk_distribution2=None\T1/ptm/m/n/10 , Overfull \hbox (6.57483pt too wide) in paragraph at lines 1913--1913 \T1/ptm/m/it/10 mi- Overfull \hbox (10.31496pt too wide) in paragraph at lines 1913--1913 \T1/ptm/m/it/10 gra- Overfull \hbox (169.32329pt too wide) in paragraph at lines 1913--1913 \T1/ptm/m/it/10 tion_heterogeneity_distribution_flag=None\T1/ptm/m/n/10 , Overfull \hbox (6.57483pt too wide) in paragraph at lines 1913--1913 \T1/ptm/m/it/10 mi- Overfull \hbox (10.31496pt too wide) in paragraph at lines 1913--1913 \T1/ptm/m/it/10 gra- Overfull \hbox (154.42328pt too wide) in paragraph at lines 1913--1913 \T1/ptm/m/it/10 tion_heterogeneity_distribution1=None\T1/ptm/m/n/10 , Overfull \hbox (6.57483pt too wide) in paragraph at lines 1913--1913 \T1/ptm/m/it/10 mi- Overfull \hbox (10.31496pt too wide) in paragraph at lines 1913--1913 \T1/ptm/m/it/10 gra- Overfull \hbox (154.42328pt too wide) in paragraph at lines 1913--1913 \T1/ptm/m/it/10 tion_heterogeneity_distribution2=None\T1/ptm/m/n/10 , Overfull \hbox (12.48488pt too wide) in paragraph at lines 1913--1913 \T1/ptm/m/it/10 mor- Overfull \hbox (7.13475pt too wide) in paragraph at lines 1913--1913 \T1/ptm/m/it/10 tal- Overfull \hbox (85.0839pt too wide) in paragraph at lines 1913--1913 \T1/ptm/m/it/10 ity_distribution=None\T1/ptm/m/n/10 , Overfull \hbox (9.35475pt too wide) in paragraph at lines 1913--1913 \T1/ptm/m/it/10 sus- Overfull \hbox (10.45485pt too wide) in paragraph at lines 1913--1913 \T1/ptm/m/it/10 cep- Overfull \hbox (2.13475pt too wide) in paragraph at lines 1913--1913 \T1/ptm/m/it/10 ti- Overfull \hbox (7.13475pt too wide) in paragraph at lines 1913--1913 \T1/ptm/m/it/10 bil- Overfull \hbox (88.5839pt too wide) in paragraph at lines 1913--1913 \T1/ptm/m/it/10 ity_distribution=None\T1/pcr/m/n/10 ) [23] Underfull \hbox (badness 10000) in paragraph at lines 1918--1918 []\T1/ptm/m/it/10 distribution_values: List[[][]float[][]] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 1932--1932 []\T1/ptm/m/it/10 distribution_values=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-s ult_scale_factor=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 1952--1952 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 axis_units=None\T1/ptm/m /n/10 , \T1/ptm/m/it/10 num_distribution_axes=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1952--1952 \T1/ptm/m/it/10 pop-u-la-tion_groups=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-su lt_scale_factor=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- [24] Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 []\T1/ptm/m/it/10 airport: Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 [][]\T1/ptm/m/it/10 int[][] = Overfull \hbox (4.8247pt too wide) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 tude=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Overfull \hbox (0.98447pt too wide) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 birth_rate: Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 [][]\T1/ptm/m/it/10 float[][] = Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 coun- Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 try=None\T1/ptm/m/n/10 , Overfull \hbox (9.42453pt too wide) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 growth_rate: Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 [][]\T1/ptm/m/it/10 float[][] = Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 lat-i-tude: Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 [][]\T1/ptm/m/it/10 float[][] = Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 lon-gi-tude: Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 [][]\T1/ptm/m/it/10 float[][] = Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 meta-data: Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 [][]\T1/ptm/m/it/10 dict[][] = Overfull \hbox (22.25432pt too wide) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 tial_population: Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 [][]\T1/ptm/m/it/10 int[][] = Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 sea-port: Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 [][]\T1/ptm/m/it/10 int[][] = Overfull \hbox (50.58374pt too wide) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 val_habitat_multiplier: Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 List[[][]float[][]] Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 ini- Overfull \hbox (86.9334pt too wide) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 tial_vectors_per_species=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 in-fec-tiv- Overfull \hbox (15.02396pt too wide) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 ity_multiplier: Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 [][]\T1/ptm/m/it/10 float[][] = Overfull \hbox (15.23419pt too wide) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 tra_attributes: Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 [][]\T1/ptm/m/it/10 dict[][] = [25] [26] Underfull \hbox (badness 10000) in paragraph at lines 2058--2059 []\T1/pcr/b/n/10 distribution \T1/ptm/m/n/10 ^^U The se-lected dis-tri-bu-tion (need to come from Underfull \hbox (badness 10000) in paragraph at lines 2078--2078 []\T1/ptm/m/it/10 filename\T1/ptm/m/n/10 , \T1/ptm/m/it/10 dis-tri-bu-tion\T1/p tm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2079--2080 \T1/ptm/m/n/10 Set the \T1/pcr/m/n/10 ImmunityDistributionFlag\T1/ptm/m/n/10 , \T1/pcr/m/n/10 ImmunityDistribution1 \T1/ptm/m/n/10 and Underfull \hbox (badness 10000) in paragraph at lines 2106--2106 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2106--2106 \T1/ptm/m/it/10 fn\T1/ptm/m/n/10 , [27] Underfull \hbox (badness 10000) in paragraph at lines 2176--2176 []\T1/ptm/m/it/10 cb\T1/ptm/m/n/10 , Overfull \hbox (28.70406pt too wide) in paragraph at lines 2176--2176 \T1/ptm/m/it/10 use_existing=False\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 2202--2202 []\T1/ptm/m/it/10 cb\T1/ptm/m/n/10 , Overfull \hbox (34.70406pt too wide) in paragraph at lines 2202--2202 \T1/ptm/m/it/10 use_existing=False\T1/pcr/m/n/10 ) [28] Underfull \hbox (badness 10000) in paragraph at lines 2274--2274 []\T1/ptm/m/it/10 point\T1/ptm/m/n/10 , Overfull \hbox (37.41425pt too wide) in paragraph at lines 2274--2274 \T1/ptm/m/it/10 grid_id_2_cell_id\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2315--2315 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Event_Trigger\T1/ptm/m/n /10 , Overfull \hbox (73.22345pt too wide) in paragraph at lines 2315--2315 \T1/ptm/m/it/10 Node_Selection_Type=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 DISTANCE_ ONLY\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (57.50374pt too wide) in paragraph at lines 2315--2315 \T1/ptm/m/it/10 Max_Distance_To_Other_Nodes_Km=- [29] Underfull \hbox (badness 10000) in paragraph at lines 2350--2350 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 In-ter-ven- Underfull \hbox (badness 10000) in paragraph at lines 2393--2394 []\T1/pcr/b/n/10 but without the distribution, which is inferred. E.g., Underfull \hbox (badness 10000) in paragraph at lines 2414--2414 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Event_Or_Config=\TS1/ptm /m/it/10 '\T1/ptm/m/it/10 Event\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/ 10 Con-fig=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2414--2414 \T1/ptm/m/it/10 Event=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 NoTrigger\TS1/ptm/m/it/ 10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Ten-dency=1.0\T1/ptm/m/n/10 , \T1/ptm/m/it /10 Sin-gle_Use=True\T1/ptm/m/n/10 , [30] Underfull \hbox (badness 10000) in paragraph at lines 2458--2458 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Trig-gers\T1/ptm/m/n/10 , \T1/ptm/m/it/10 In-ter-ven-tions\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Prop- Underfull \hbox (badness 10000) in paragraph at lines 2458--2458 \T1/ptm/m/it/10 erty_Restrictions=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 De-mo- Underfull \hbox (badness 10000) in paragraph at lines 2458--2458 \T1/ptm/m/it/10 graphic_Coverage=1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar-get_Ag e_Min=0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar- Underfull \hbox (badness 10000) in paragraph at lines 2458--2458 \T1/ptm/m/it/10 get_Age_Max=45625\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar-get_Gende r=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 All\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/p tm/m/it/10 Tar- Underfull \hbox (badness 10000) in paragraph at lines 2458--2458 \T1/ptm/m/it/10 get_Residents_Only=1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Duration=- 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Black- Underfull \hbox (badness 10000) in paragraph at lines 2458--2458 \T1/ptm/m/it/10 out_Event_Trigger=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Black-ou t_Period=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2458--2458 \T1/ptm/m/it/10 Black-out_On_First_Occurrence=None\T1/ptm/m/n/10 , \T1/ptm/m/it /10 Dis-qual-i-fy- Underfull \hbox (badness 10000) in paragraph at lines 2520--2520 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar-get_Property_Key\T1/ ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2520--2520 \T1/ptm/m/it/10 Tar-get_Property_Value\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2520--2520 \T1/ptm/m/it/10 Daily_Probability=1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Max- Underfull \hbox (badness 10000) in paragraph at lines 2520--2520 \T1/ptm/m/it/10 i-mum_Duration=1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Revert=- Underfull \hbox (badness 10000) in paragraph at lines 2520--2520 \T1/ptm/m/it/10 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 In-ter-ven-tion_Name=\TS1/ptm /m/it/10 ''\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2520--2520 \T1/ptm/m/it/10 Event_Trigger_Distributed=\TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , [31] Underfull \hbox (badness 10000) in paragraph at lines 2528--2529 []\T1/pcr/b/n/10 The key part of the new key-value pair of the IP. Underfull \hbox (badness 10000) in paragraph at lines 2531--2532 []\T1/pcr/b/n/10 The value part of the new key-value pair of the IP. Underfull \hbox (badness 10000) in paragraph at lines 2537--2538 []\T1/pcr/b/n/10 The daily probability that an individual will move to the Underfull \hbox (badness 10000) in paragraph at lines 2540--2541 []\T1/pcr/b/n/10 The maximum amount of time individuals have to move Underfull \hbox (badness 10000) in paragraph at lines 2540--2541 \T1/pcr/b/n/10 to a new group. This timing works in conjunction with Underfull \hbox (badness 10000) in paragraph at lines 2543--2544 []\T1/pcr/b/n/10 The number of days before an individual moves back to their Underfull \hbox (badness 10000) in paragraph at lines 2546--2547 []\T1/pcr/b/n/10 Optional Intervention_Name. Useful if managing a replacement Underfull \hbox (badness 10000) in paragraph at lines 2549--2550 []\T1/pcr/b/n/10 Optional broadcast trigger to be published when PVC is Underfull \hbox (badness 10000) in paragraph at lines 2552--2553 []\T1/pcr/b/n/10 Optional broadcast trigger to be published when PVC is Underfull \hbox (badness 10000) in paragraph at lines 2570--2570 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Start_Day: [][]int[][]\T 1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2570--2570 \T1/ptm/m/it/10 Node_Ids=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Node- Underfull \hbox (badness 10000) in paragraph at lines 2570--2570 \T1/ptm/m/it/10 set_Config=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Num- Underfull \hbox (badness 10000) in paragraph at lines 2570--2570 \T1/ptm/m/it/10 ber_Repetitions: [][]int[][] = 1\T1/ptm/m/n/10 , Overfull \hbox (4.90335pt too wide) in paragraph at lines 2570--2570 \T1/ptm/m/it/10 Timesteps_Between_Repetitions: Underfull \hbox (badness 10000) in paragraph at lines 2570--2570 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Sched-uled_Campaign_Event\TS1/ptm/m/it/10 '\T 1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2570--2570 \T1/ptm/m/it/10 Prop-erty_Restrictions=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2570--2570 \T1/ptm/m/it/10 = 1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar-get_Age_Min=0\T1/ptm/ m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2570--2570 \T1/ptm/m/it/10 Tar-get_Age_Max=45625\T1/ptm/m/n/10 , [32] Underfull \hbox (badness 10000) in paragraph at lines 2637--2637 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Start_Day: [][]int[][]\T 1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2637--2637 \T1/ptm/m/it/10 List[[][]str[][]]\T1/ptm/m/n/10 , \T1/ptm/m/it/10 In-ter-ven-ti on_List: Underfull \hbox (badness 10000) in paragraph at lines 2637--2637 \T1/ptm/m/it/10 List[[][]dict[][]]\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Node_Ids=Non e\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2637--2637 \T1/ptm/m/it/10 Node-set_Config=None\T1/ptm/m/n/10 , Overfull \hbox (17.59343pt too wide) in paragraph at lines 2637--2637 \T1/ptm/m/it/10 Node_Property_Restrictions=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2637--2637 \T1/ptm/m/it/10 Prop-erty_Restrictions=None\T1/ptm/m/n/10 , Overfull \hbox (4.90335pt too wide) in paragraph at lines 2637--2637 \T1/ptm/m/it/10 Timesteps_Between_Repetitions: Underfull \hbox (badness 10000) in paragraph at lines 2637--2637 [][]\T1/ptm/m/it/10 int[][] = - 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 De-mo- Underfull \hbox (badness 10000) in paragraph at lines 2637--2637 \T1/ptm/m/it/10 graphic_Coverage: [][]float[][] Underfull \hbox (badness 10000) in paragraph at lines 2637--2637 \T1/ptm/m/it/10 = 1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar-get_Age_Min=0\T1/ptm/ m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2637--2637 \T1/ptm/m/it/10 Tar-get_Age_Max=45625\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2637--2637 \T1/ptm/m/it/10 Tar-get_Residents_Only=1\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2637--2637 \T1/ptm/m/it/10 Duration=- 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Black- Underfull \hbox (badness 10000) in paragraph at lines 2637--2637 \T1/ptm/m/it/10 Black-out_Period=0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Black- Underfull \hbox (badness 10000) in paragraph at lines 2637--2637 \T1/ptm/m/it/10 out_On_First_Occurrence=0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2637--2637 \T1/ptm/m/it/10 Dis-qual-i-fy- Underfull \hbox (badness 10000) in paragraph at lines 2637--2637 \T1/ptm/m/it/10 ing_Properties=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 De- [33] Underfull \hbox (badness 6078) in paragraph at lines 2725--2725 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Base_Sensitivity: [][]fl oat[][] = Underfull \hbox (badness 10000) in paragraph at lines 2725--2725 \T1/ptm/m/it/10 Event_Trigger_Distributed: [][]str[][] Underfull \hbox (badness 10000) in paragraph at lines 2725--2725 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Event_Trigger_Expired: Underfull \hbox (badness 10000) in paragraph at lines 2725--2725 [][]\T1/ptm/m/it/10 str[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Pos-i- Underfull \hbox (badness 10000) in paragraph at lines 2725--2725 \T1/ptm/m/it/10 tive_Diagnosis_Intervention=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2725--2725 \T1/ptm/m/it/10 Pos-i-tive_Diagnosis_Event: Underfull \hbox (badness 10000) in paragraph at lines 2725--2725 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Pos-i-tiveRe-su lt\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Neg-a- Underfull \hbox (badness 10000) in paragraph at lines 2725--2725 \T1/ptm/m/it/10 tive_Diagnosis_Intervention=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2725--2725 \T1/ptm/m/it/10 Neg-a-tive_Diagnosis_Event: Underfull \hbox (badness 10000) in paragraph at lines 2725--2725 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Neg-a-tiveRe-su lt\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Treat- [34] Underfull \hbox (badness 10000) in paragraph at lines 2779--2779 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2779--2779 \T1/ptm/m/it/10 trig-ger\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-lay\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2779--2779 \T1/ptm/m/it/10 in-ter-ven-tion\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2779--2779 \T1/ptm/m/it/10 ip_targeting=[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2793--2794 []\T1/pcr/b/n/10 without the distribution, which is inferred. E.g., { Underfull \hbox (badness 10000) in paragraph at lines 2816--2816 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2816--2816 \T1/ptm/m/it/10 new_ip_key\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2816--2816 \T1/ptm/m/it/10 new_ip_value\T1/ptm/m/n/10 , Overfull \hbox (25.72469pt too wide) in paragraph at lines 2816--2816 \T1/ptm/m/it/10 change_age_in_days\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2816--2816 \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 2816--2816 \T1/ptm/m/it/10 vert_in_days\T1/ptm/m/n/10 , Overfull \hbox (8.6443pt too wide) in paragraph at lines 2816--2816 \T1/ptm/m/it/10 ip_targeting_key\T1/ptm/m/n/10 , Overfull \hbox (17.38419pt too wide) in paragraph at lines 2816--2816 \T1/ptm/m/it/10 ip_targeting_value\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2816--2816 \T1/ptm/m/it/10 cov-er- [35] Underfull \hbox (badness 10000) in paragraph at lines 2875--2875 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 nodeto\T1/ptm/m/n/10 , \ T1/ptm/m/it/10 start_day: Underfull \hbox (badness 8056) in paragraph at lines 2875--2875 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age: [][ ]float[][] Underfull \hbox (badness 7851) in paragraph at lines 2875--2875 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar-get_age: [][]dict[][ ] Underfull \hbox (badness 10000) in paragraph at lines 2875--2875 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 nodes_from_ids: Underfull \hbox (badness 10000) in paragraph at lines 2875--2875 \T1/ptm/m/it/10 List[[][]int[][]] = None\T1/ptm/m/n/10 , Overfull \hbox (5.56337pt too wide) in paragraph at lines 2875--2875 \T1/ptm/m/it/10 ind_property_restrictions=None\T1/ptm/m/n/10 , Overfull \hbox (12.22342pt too wide) in paragraph at lines 2875--2875 \T1/ptm/m/it/10 node_property_restrictions=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2875--2875 \T1/ptm/m/it/10 trig-gered_campaign_delay=0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2875--2875 \T1/ptm/m/it/10 trig-ger_condition_list=None\T1/ptm/m/n/10 , [36] Underfull \hbox (badness 10000) in paragraph at lines 2904--2908 []\T1/ptm/m/n/10 {^^PDuration_Before_Leaving_Distribution^^Q:^^QGAUSSIAN_DISTRI BUTION^^Q, Underfull \hbox (badness 10000) in paragraph at lines 2904--2908 \T1/ptm/m/n/10 ^^PDu-ra-tion_Before_Leaving_Gaussian_Mean^^Q: 14, ^^PDu- Underfull \hbox (badness 10000) in paragraph at lines 2904--2908 \T1/ptm/m/n/10 ra-tion_Before_Leaving_Gaussian_Std_Dev^^Q 3} {^^PDu-ra- Underfull \hbox (badness 10000) in paragraph at lines 2904--2908 \T1/ptm/m/n/10 tion_Before_Leaving_Distribution^^Q:^^QPOISSON_DISTRIBUTION^^Q, ^^PDu-ra- Underfull \hbox (badness 10000) in paragraph at lines 2917--2920 []\T1/ptm/m/n/10 {^^PDuration_At_Node_Distribution^^Q:^^QGAUSSIAN_DISTRIBUTION^ ^Q, ^^PDu-ra- Underfull \hbox (badness 10000) in paragraph at lines 2917--2920 \T1/ptm/m/n/10 tion_At_Node_Gaussian_Mean^^Q: 14, ^^PDu-ra-tion_At_Node_Gaussia n_Std_Dev^^Q Underfull \hbox (badness 10000) in paragraph at lines 2917--2920 \T1/ptm/m/n/10 3} {^^PDu-ra-tion_At_Node_Distribution^^Q:^^QPOISSON_DISTRIBUTIO N^^Q, ^^PDu-ra- Overfull \hbox (19.69089pt too wide) in paragraph at lines 2964--2968 \T1/ptm/m/n/10 from emod_api im-port cam-paign as camp dan = {^^PDu-ra-tion_At_ Node_Distribution^^Q:^^QPOISSON_DISTRIBUTION^^Q, Overfull \hbox (57.24088pt too wide) in paragraph at lines 2964--2968 \T1/ptm/m/n/10 ^^PDu-ra-tion_At_Node_Poisson_Mean^^Q 30} dbl = {^^PDu-ra-tion_B efore_Leaving_Distribution^^Q:^^QGAUSSIAN_DISTRIBUTION^^Q, Underfull \hbox (badness 10000) in paragraph at lines 2969--2974 [] [37] Underfull \hbox (badness 10000) in paragraph at lines 2985--2985 \T1/ptm/m/it/10 pro-file=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 CONST\TS1/ptm/m/it/1 0 '\T1/ptm/m/n/10 , ! LaTeX Error: Too deeply nested. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.2994 ...{CONST(ANT)}] \leavevmode\begin{itemize} Underfull \hbox (badness 10000) in paragraph at lines 3056--3056 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day=1\T1/ptm/m/n/1 0 , Underfull \hbox (badness 10000) in paragraph at lines 3056--3056 \T1/ptm/m/it/10 new_infectivity=1.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3056--3056 \T1/ptm/m/it/10 pro-file=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 CONST\TS1/ptm/m/it/1 0 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3056--3056 \T1/ptm/m/it/10 node_ids=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3056--3056 \T1/ptm/m/it/10 re-cur-ring=True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3064--3064 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3075--3075 \T1/ptm/m/it/10 age=0.01\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ig-nore_immunity=None\ T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3084--3084 []\T1/ptm/m/it/10 campaign_builder\T1/ptm/m/n/10 , \T1/ptm/m/it/10 timestep\T1/ ptm/m/n/10 , [38] Underfull \hbox (badness 10000) in paragraph at lines 3118--3118 \T1/ptm/m/it/10 ef-fi-cacy=1.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3118--3118 \T1/ptm/m/it/10 sv_name=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Vaccine\TS1/ptm/m/it/ 10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3118--3118 \T1/ptm/m/it/10 wan-ing_duration=100\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3118--3118 \T1/ptm/m/it/10 d_a_d=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3118--3118 \T1/ptm/m/it/10 cost_to_consumer=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3118--3118 \T1/ptm/m/it/10 e_i_r=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in-ter-ven- Underfull \hbox (badness 10000) in paragraph at lines 3139--3139 []\T1/ptm/m/it/10 timestep\T1/ptm/m/n/10 , \T1/ptm/m/it/10 file- Underfull \hbox (badness 10000) in paragraph at lines 3156--3156 []\T1/ptm/m/it/10 schema_path\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ini-tial=1.0\T1/p tm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3156--3156 \T1/ptm/m/it/10 box_duration=365\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de- [39] [40] Underfull \hbox (badness 5548) in paragraph at lines 3263--3266 []\T1/ptm/m/n/10 EMOD/DTK for-mat mi-gra-tion files (and as-so-ci-ated meta-dat a files) can be writ-ten with mi-gra- [41] Underfull \hbox (badness 10000) in paragraph at lines 3529--3529 \T1/ptm/m/it/10 num_nodes=100\T1/ptm/m/n/10 , \T1/ptm/m/it/10 mig_factor=1.0\T1 /ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3529--3529 \T1/ptm/m/it/10 frac_rural=0.3\T1/ptm/m/n/10 , \T1/ptm/m/it/10 id_ref=\TS1/ptm/ m/it/10 '\T1/ptm/m/it/10 from_params\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm/ m/it/10 mi- Overfull \hbox (68.98433pt too wide) in paragraph at lines 3540--3540 []\T1/ptm/m/it/10 demographics_file_path: Underfull \hbox (badness 10000) in paragraph at lines 3540--3540 [][]\T1/ptm/m/it/10 str[][]\T1/ptm/m/n/10 , Overfull \hbox (2.42482pt too wide) in paragraph at lines 3540--3540 \T1/ptm/m/it/10 params: Underfull \hbox (badness 10000) in paragraph at lines 3540--3540 [][]\T1/ptm/m/it/10 str[][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3540--3540 \T1/ptm/m/it/10 id_ref: Underfull \hbox (badness 10000) in paragraph at lines 3540--3540 [][]\T1/ptm/m/it/10 str[][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3540--3540 \T1/ptm/m/it/10 mi-gra- Overfull \hbox (24.21457pt too wide) in paragraph at lines 3540--3540 \T1/ptm/m/it/10 tion_type=1\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 3540--3540 \OMS/cmsy/m/n/10 !$ Overfull \hbox (135.19371pt too wide) in paragraph at lines 3540--3540 [][]\T1/ptm/m/it/10 emod_api.migration.migration.Migration[][] [42] Overfull \hbox (2.15437pt too wide) in paragraph at lines 3568--3568 []\T1/ptm/m/it/10 demographics_file_path\T1/ptm/m/n/10 , Overfull \hbox (24.70302pt too wide) in paragraph at lines 3622--3622 []\T1/ptm/m/it/10 path_to_binary\T1/ptm/m/n/10 , \T1/ptm/m/it/10 path_to_write_ schema=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 schema.json\TS1/ptm/m/it/10 '\T1/pcr/m /n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 3643--3643 []\T1/ptm/m/it/10 input_serpop_path\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3643--3643 \T1/ptm/m/it/10 mod_fn=None\T1/ptm/m/n/10 , [43] Underfull \hbox (badness 10000) in paragraph at lines 3664--3664 []\T1/ptm/m/it/10 file: [44] Underfull \hbox (badness 10000) in paragraph at lines 3790--3790 []\T1/ptm/m/it/10 name: [][]str[][]\T1/ptm/m/n/10 , \T1/ptm/m/it/10 han-dle\T1/ ptm/m/n/10 , \T1/ptm/m/it/10 cur- Underfull \hbox (badness 10000) in paragraph at lines 3825--3825 []\T1/ptm/m/it/10 handle\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cur- [45] Underfull \hbox (badness 7203) in paragraph at lines 3954--3954 \T1/ptm/m/it/10 True, \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 date\TS1/ptm/m/it/10 '\ T1/ptm/m/it/10 : \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Wed Feb 09 Underfull \hbox (badness 5050) in paragraph at lines 3954--3954 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 tool\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 : \TS1/ ptm/m/it/10 '\T1/ptm/m/it/10 dtk-File-Tools.py\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 , \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 ver- [46] [47] Underfull \hbox (badness 10000) in paragraph at lines 4188--4188 \T1/ptm/m/it/10 List[[][]int[][]] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 data: Underfull \hbox (badness 10000) in paragraph at lines 4188--4188 \T1/ptm/m/it/10 numpy.array = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start: [48] [49] [50] [51] [52] Chapter 4. [53] [54] Overfull \hbox (66.6225pt too wide) in paragraph at lines 4727--4728 []\T1/pcr/m/n/10 emod_api.config.default_from_schema_no_validation\T1/ptm/m/n/1 0 , Overfull \hbox (36.6225pt too wide) in paragraph at lines 4728--4729 []\T1/pcr/m/n/10 emod_api.config.dtk_post_process_adhocevents\T1/ptm/m/n/10 , Overfull \hbox (30.6225pt too wide) in paragraph at lines 4729--4730 []\T1/pcr/m/n/10 emod_api.config.dtk_pre_process_adhocevents\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4730--4731 []\T1/pcr/m/n/10 emod_api.config.dtk_pre_process_w5ml\T1/ptm/m/n/10 , Overfull \hbox (12.6225pt too wide) in paragraph at lines 4738--4739 []\T1/pcr/m/n/10 emod_api.demographics.demographics_utils\T1/ptm/m/n/10 , Overfull \hbox (30.6225pt too wide) in paragraph at lines 4739--4740 []\T1/pcr/m/n/10 emod_api.demographics.DemographicsGenerator\T1/ptm/m/n/10 , Overfull \hbox (72.6225pt too wide) in paragraph at lines 4740--4741 []\T1/pcr/m/n/10 emod_api.demographics.DemographicsInputDataParsers\T1/ptm/m/n/ 10 , Overfull \hbox (30.6225pt too wide) in paragraph at lines 4741--4742 []\T1/pcr/m/n/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 , Overfull \hbox (6.6225pt too wide) in paragraph at lines 4742--4743 []\T1/pcr/m/n/10 emod_api.demographics.grid_construction\T1/ptm/m/n/10 , Overfull \hbox (42.6225pt too wide) in paragraph at lines 4744--4745 []\T1/pcr/m/n/10 emod_api.demographics.PreDefinedDistributions\T1/ptm/m/n/10 , Overfull \hbox (42.6225pt too wide) in paragraph at lines 4745--4746 []\T1/pcr/m/n/10 emod_api.demographics.PropertiesAndAttributes\T1/ptm/m/n/10 , Overfull \hbox (0.6225pt too wide) in paragraph at lines 4749--4750 []\T1/pcr/m/n/10 emod_api.interventions.import_pressure\T1/ptm/m/n/10 , Overfull \hbox (0.6225pt too wide) in paragraph at lines 4751--4752 []\T1/pcr/m/n/10 emod_api.interventions.node_multiplier\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4753--4754 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opertiesAndAttributes.IndividualProperties Underfull \hbox (badness 10000) in paragraph at lines 11--13 []\T1/pcr/m/n/10 add_migration_event() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-u le Overfull \hbox (148.70953pt too wide) in paragraph at lines 13--15 []\T1/pcr/m/n/10 add_parameter() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demog raphics.PropertiesAndAttributes.IndividualProperties Overfull \hbox (61.87129pt too wide) in paragraph at lines 15--17 []\T1/pcr/m/n/10 add_parameter() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demog raphics.Updateable.Updateable Underfull \hbox (badness 10000) in paragraph at lines 17--19 []\T1/pcr/m/n/10 AddAgeDependentTransmission() Overfull \hbox (34.06111pt too wide) in paragraph at lines 17--19 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 19--21 []\T1/pcr/m/n/10 AddIndividualPropertyAndHINT() Overfull \hbox (34.06111pt too wide) in paragraph at lines 19--21 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paragraph at lines 64--66 []\T1/pcr/m/n/10 birth_rate() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demograp hics.Node.Node Underfull \hbox (badness 10000) in paragraph at lines 66--68 []\T1/pcr/m/n/10 BroadcastEvent() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 68--70 []\T1/pcr/m/n/10 BroadcastEventToOtherNodes() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 i n mod-ule Overfull \hbox (23.59027pt too wide) in paragraph at lines 71--73 []\T1/pcr/m/n/10 byte_count() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializ ation.dtkFileTools.DtkFile Underfull \hbox (badness 7291) in paragraph at lines 76--78 []\T1/pcr/m/n/10 change_individual_property_at_age() \T1/ptm/m/n/10 (\T1/ptm/m/ it/10 in Underfull \hbox (badness 10000) in paragraph at lines 78--80 []\T1/pcr/m/n/10 change_ser_pop() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 78--80 \T1/ptm/m/it/10 emod_api.serialization.CensusAndModPop\T1/ptm/m/n/10 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115--117 []\T1/pcr/m/n/10 creation_date() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.weath er.weather.Weather Underfull \hbox (badness 10000) in paragraph at lines 120--122 []\T1/pcr/m/n/10 data() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channelreports .channels.Channel Underfull \hbox (badness 10000) in paragraph at lines 122--124 []\T1/pcr/m/n/10 data() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.spatialreports .spatial.SpatialNode Underfull \hbox (badness 10000) in paragraph at lines 128--130 []\T1/pcr/m/n/10 datavalue_count() Underfull \hbox (badness 10000) in paragraph at lines 128--130 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.weather.weather.Metadata prop- Underfull \hbox (badness 10000) in paragraph at lines 130--132 []\T1/pcr/m/n/10 datavalue_count() Underfull \hbox (badness 10000) in paragraph at lines 130--132 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.weather.weather.Weather prop- Overfull \hbox (20.22127pt too wide) in paragraph at lines 132--134 []\T1/pcr/m/n/10 DatavalueCount() 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paragraph at lines 142--144 \T1/ptm/m/it/10 mod-ule emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/ 10 ), Underfull \hbox (badness 10000) in paragraph at lines 144--146 []\T1/pcr/m/n/10 DelayedIntervention() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 146--148 []\T1/pcr/m/n/10 Demographics \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 146--148 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 148--150 []\T1/pcr/m/n/10 DemographicsGenerator \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Overfull \hbox (17.1711pt too wide) in paragraph at lines 148--150 \T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 150--152 []\T1/pcr/m/n/10 DemographicsOverlay \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 150--152 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 152--154 []\T1/pcr/m/n/10 DemographicsType \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Overfull \hbox (17.1711pt too wide) in paragraph at lines 152--154 \T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 154--156 []\T1/pcr/m/n/10 do_mapping_from_events() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule Overfull \hbox (4.2412pt too wide) in paragraph at lines 154--156 \T1/ptm/m/it/10 emod_api.config.dtk_pre_process_adhocevents\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 157--159 []\T1/pcr/m/n/10 dtk_to_schema() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (56.83089pt too wide) in paragraph at lines 159--161 []\T1/pcr/m/n/10 dtk_version() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channel reports.channels.ChannelReport Overfull \hbox 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in paragraph at lines 176--178 []\T1/pcr/m/n/10 DtkFileV3.NodesV3 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 178--180 []\T1/pcr/m/n/10 DtkFileV4 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 180--182 []\T1/pcr/m/n/10 DtkHeader \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 182--184 []\T1/pcr/m/n/10 duplicate_nodeID_check() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule Overfull \hbox (46.65079pt too wide) in paragraph at lines 182--184 \T1/ptm/m/it/10 emod_api.demographics.DemographicsInputDataParsers\T1/ptm/m/n/1 0 ), Underfull \hbox (badness 10000) in paragraph at lines 187--189 []\T1/pcr/m/n/10 EllZeeFour \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Overfull \hbox (64.1225pt too wide) in paragraph at lines 201--202 []\T1/pcr/m/n/10 emod_api.config.default_from_schema_no_validation Overfull \hbox (34.1225pt too wide) in paragraph at lines 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wide) in paragraph at lines 237--238 []\T1/pcr/m/n/10 emod_api.demographics.PropertiesAndAttributes Overfull \hbox (4.1225pt too wide) in paragraph at lines 267--268 []\T1/pcr/m/n/10 emod_api.schema.dtk_post_process_schema [59] Overfull \hbox (28.1225pt too wide) in paragraph at lines 283--284 []\T1/pcr/m/n/10 emod_api.serialization.SerializedPopulation Overfull \hbox (15.62103pt too wide) in paragraph at lines 295--297 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 297--299 []\T1/pcr/m/n/10 examine_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 307--309 []\T1/pcr/m/n/10 fill_nodes_legacy() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (46.65079pt too wide) in paragraph at lines 307--309 \T1/ptm/m/it/10 emod_api.demographics.DemographicsInputDataParsers\T1/ptm/m/n/1 0 ), Overfull \hbox (4.62106pt too wide) in paragraph at lines 309--311 []\T1/pcr/m/n/10 finalize() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.schema_to_ class.ReadOnlyDict Overfull \hbox (36.30013pt too wide) in paragraph at lines 311--313 []\T1/pcr/m/n/10 find() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule emod_api.ser ialization.SerializedPopulation\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 313--315 []\T1/pcr/m/n/10 flattenConfig() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (81.59949pt too wide) in paragraph at lines 315--317 []\T1/pcr/m/n/10 flush() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serialization .SerializedPopulation.SerializedPopulation Underfull \hbox (badness 10000) in paragraph at lines 319--321 []\T1/pcr/m/n/10 from_csv() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 319--321 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 321--322 []\T1/pcr/m/n/10 from_csv() 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Underfull \hbox (badness 10000) in paragraph at lines 350--352 []\T1/pcr/m/n/10 from_template_node() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 350--352 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 352--354 []\T1/pcr/m/n/10 FullRisk() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (15.62103pt too wide) in paragraph at lines 352--354 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Overfull \hbox (37.30118pt too wide) in paragraph at lines 357--359 []\T1/pcr/m/n/10 GenderDataType() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migr ation.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 359--361 []\T1/pcr/m/n/10 generate_demographics() Overfull \hbox (115.97037pt too wide) in paragraph at lines 359--361 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator.Dem ographicsGenerator Overfull \hbox (80.97084pt too wide) in paragraph at lines 361--363 []\T1/pcr/m/n/10 generate_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demog raphics.BaseInputFile.BaseInputFile Overfull \hbox (85.96114pt too wide) in paragraph at lines 363--365 []\T1/pcr/m/n/10 generate_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demog raphics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 365--367 []\T1/pcr/m/n/10 generate_headers() Overfull \hbox (29.07082pt too wide) in paragraph at lines 365--367 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.BaseInputFile.BaseInputFi le Underfull \hbox (badness 10000) in paragraph at lines 367--369 []\T1/pcr/m/n/10 generate_metadata() Overfull \hbox (115.97037pt too wide) in paragraph at lines 367--369 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator.Dem ographicsGenerator Overfull \hbox (173.87039pt too wide) in paragraph at lines 369--371 []\T1/pcr/m/n/10 generate_nodes() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demo graphics.DemographicsGenerator.DemographicsGenerator [60] Underfull \hbox (badness 10000) in paragraph at lines 372--374 []\T1/pcr/m/n/10 get_bbox() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 372--374 \T1/ptm/m/it/10 emod_api.demographics.grid_construction\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 374--376 []\T1/pcr/m/n/10 get_class_with_defaults() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in m od-ule Overfull \hbox (62.64088pt too wide) in paragraph at lines 376--378 \T1/ptm/m/it/10 mod-ule emod_api.config.default_from_schema_no_validation\T1/pt m/m/n/10 ), Overfull \hbox (45.42091pt too wide) in paragraph at lines 378--380 \T1/ptm/m/it/10 ule emod_api.config.default_from_schema_no_validation\T1/ptm/m/ n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 383--385 []\T1/pcr/m/n/10 get_fert_dist() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox 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paragraph at lines 391--393 []\T1/pcr/m/n/10 get_node() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographi cs.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 393--395 []\T1/pcr/m/n/10 get_node_ids_from_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 393--395 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 395--397 []\T1/pcr/m/n/10 get_node_offsets() Underfull \hbox (badness 10000) in paragraph at lines 395--397 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 397--399 []\T1/pcr/m/n/10 get_node_pops_from_params() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 399--401 []\T1/pcr/m/n/10 get_parameters() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 399--401 \T1/ptm/m/it/10 emod_api.serialization.SerializedPopulation\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 401--402 []\T1/pcr/m/n/10 get_recv_trigger() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 403--404 []\T1/pcr/m/n/10 get_send_trigger() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 404--405 []\T1/pcr/m/n/10 get_trigger_list() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 405--407 []\T1/pcr/m/n/10 get_waning_from_params() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 407--409 []\T1/pcr/m/n/10 get_xpix_ypix() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (26.83089pt too wide) in paragraph at lines 413--415 []\T1/pcr/m/n/10 header() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channelrepor ts.channels.ChannelReport Underfull \hbox (badness 10000) in paragraph at lines 424--426 []\T1/pcr/m/n/10 id() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.spatialreports.s patial.SpatialNode Underfull \hbox (badness 7308) in paragraph at lines 426--427 []\T1/pcr/m/n/10 id() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.weather.weather. 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(\T1/ptm/m/it/10 emod_api.migration.migration.Migration Overfull \hbox (13.30058pt too wide) in paragraph at lines 437--439 []\T1/pcr/m/n/10 IDREF_LEGACY \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migratio n.migration.Migration Overfull \hbox (19.30118pt too wide) in paragraph at lines 439--441 []\T1/pcr/m/n/10 IdReference() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migrati on.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 441--443 []\T1/pcr/m/n/10 IndividualAttributes \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Overfull \hbox (13.93057pt too wide) in paragraph at lines 441--443 \T1/ptm/m/it/10 emod_api.demographics.PropertiesAndAttributes\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 443--445 []\T1/pcr/m/n/10 IndividualAttributes.AgeDistribution Overfull \hbox (48.84009pt too wide) in paragraph at lines 443--445 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in emod_api.demographics.PropertiesAndAtt ributes\T1/ptm/m/n/10 ), Overfull \hbox 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(\T1/ptm/m/it/10 class in Overfull \hbox (13.93057pt too wide) in paragraph at lines 451--453 \T1/ptm/m/it/10 emod_api.demographics.PropertiesAndAttributes\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 453--455 []\T1/pcr/m/n/10 infer_natural_mortality() Overfull \hbox (34.06111pt too wide) in paragraph at lines 453--455 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 455--457 []\T1/pcr/m/n/10 init_resolution_from_file() Underfull \hbox (badness 10000) in paragraph at lines 455--457 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Node.Node class [61] Underfull \hbox (badness 10000) in paragraph at lines 457--459 []\T1/pcr/m/n/10 InitAgeUniform() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (15.62103pt too wide) in paragraph at lines 457--459 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 459--461 []\T1/pcr/m/n/10 InitPrevUniform() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (15.62103pt too wide) in paragraph at lines 459--461 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 461--463 []\T1/pcr/m/n/10 InitRiskExponential() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-u le Overfull \hbox (15.62103pt too wide) in paragraph at lines 461--463 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 463--465 []\T1/pcr/m/n/10 InitRiskLogNormal() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (15.62103pt too wide) in paragraph at lines 463--465 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 465--467 []\T1/pcr/m/n/10 InitRiskUniform() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (15.62103pt too wide) in paragraph at lines 465--467 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 467--469 []\T1/pcr/m/n/10 InitSusceptConstant() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-u le Overfull \hbox (15.62103pt too wide) in paragraph at lines 467--469 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 469--471 []\T1/pcr/m/n/10 InterpolationType() Underfull \hbox (badness 10000) in paragraph at lines 469--471 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.migration.Migration Overfull \hbox (20.8303pt too wide) in paragraph at lines 471--473 []\T1/pcr/m/n/10 interval() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.spatialrep orts.spatial.SpatialReport Overfull \hbox (13.30058pt too wide) in paragraph at lines 473--475 []\T1/pcr/m/n/10 INTERVENTION \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migratio n.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 480--482 []\T1/pcr/m/n/10 lat_lon_from_nodeid() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 483--485 []\T1/pcr/m/n/10 LINEAR_INTERPOLATION Underfull \hbox (badness 10000) in paragraph at lines 483--485 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 485--487 []\T1/pcr/m/n/10 load_default_config_as_rod() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 i n mod-ule Overfull \hbox (31.30106pt too wide) in paragraph at lines 485--487 \T1/ptm/m/it/10 emod_api.config.default_from_schema_no_validation\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 487--489 []\T1/pcr/m/n/10 LOCAL \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.migra tion.Migration Underfull \hbox (badness 10000) in paragraph at lines 490--492 []\T1/pcr/m/n/10 lon_lat_2_point() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 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lines 645--647 []\T1/pcr/m/n/10 num_channels() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channe lreports.channels.Header Overfull \hbox (74.83089pt too wide) in paragraph at lines 647--649 []\T1/pcr/m/n/10 num_time_steps() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.chan nelreports.channels.ChannelReport Overfull \hbox (43.71117pt too wide) in paragraph at lines 649--651 []\T1/pcr/m/n/10 num_time_steps() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.chan nelreports.channels.Header Underfull \hbox (badness 10000) in paragraph at lines 654--656 []\T1/pcr/m/n/10 ONE_FOR_EACH_GENDER Underfull \hbox (badness 10000) in paragraph at lines 654--656 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 656--657 []\T1/pcr/m/n/10 OverlayNode \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 660--662 []\T1/pcr/m/n/10 PIECEWISE_CONSTANT Underfull \hbox (badness 10000) in paragraph at lines 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aphics.Node.Node Underfull \hbox (badness 10000) in paragraph at lines 695--697 []\T1/pcr/m/n/10 SAME_FOR_BOTH_GENDERS Underfull \hbox (badness 10000) in paragraph at lines 695--697 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 698--700 []\T1/pcr/m/n/10 ScheduledCampaignEvent() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 700--702 []\T1/pcr/m/n/10 schema_to_config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 700--702 \T1/ptm/m/it/10 emod_api.config.from_poi_and_binary\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 702--704 []\T1/pcr/m/n/10 schema_to_config_subnode() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (31.30106pt too wide) in paragraph at lines 702--704 \T1/ptm/m/it/10 emod_api.config.default_from_schema_no_validation\T1/ptm/m/n/10 ), Underfull \hbox 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graphics.DemographicsGenerator.DemographicsGenerator Underfull \hbox (badness 10000) in paragraph at lines 723--725 []\T1/pcr/m/n/10 set_risk_mod() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 723--725 \T1/ptm/m/it/10 emod_api.demographics.demographics_utils\T1/ptm/m/n/10 ), Overfull \hbox (16.62106pt too wide) in paragraph at lines 725--727 []\T1/pcr/m/n/10 set_schema() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.schema_t o_class.ReadOnlyDict Underfull \hbox (badness 10000) in paragraph at lines 728--730 []\T1/pcr/m/n/10 set_schema() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 728--730 \T1/ptm/m/it/10 emod_api.config.from_poi_and_binary\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 730--732 []\T1/pcr/m/n/10 set_static_demographics() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in m od-ule Underfull \hbox (badness 10000) in paragraph at lines 730--732 \T1/ptm/m/it/10 emod_api.demographics.demographics_utils\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 732--734 []\T1/pcr/m/n/10 SetAgeDistribution() Overfull \hbox (34.06111pt too wide) in paragraph at lines 732--734 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Overfull \hbox (79.96114pt too wide) in paragraph at lines 734--736 []\T1/pcr/m/n/10 SetBirthRate() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demogr aphics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 736--738 []\T1/pcr/m/n/10 SetConstantRisk() Overfull \hbox (34.06111pt too wide) in paragraph at lines 736--738 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 738--740 []\T1/pcr/m/n/10 SetConstantSusceptibility() Overfull \hbox (34.06111pt too wide) in paragraph at lines 738--740 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull 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emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 748--750 []\T1/pcr/m/n/10 SetDefaultProperties() Overfull \hbox (34.06111pt too wide) in paragraph at lines 748--750 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 750--752 []\T1/pcr/m/n/10 SetDefaultPropertiesFertMort() Overfull \hbox (34.06111pt too wide) in paragraph at lines 750--752 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Overfull \hbox (34.1225pt too wide) in paragraph at lines 752--754 []\T1/pcr/m/n/10 SetEquilibriumAgeDistFromBirthAndMortRates() Overfull \hbox (34.06111pt too wide) in paragraph at lines 752--754 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 754--756 []\T1/pcr/m/n/10 SetHeteroRiskExponDist() Overfull \hbox (34.06111pt too wide) in paragraph at lines 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too wide) in paragraph at lines 762--764 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 764--766 []\T1/pcr/m/n/10 SetInitialAgeLikeSubSaharanAfrica() Overfull \hbox (34.06111pt too wide) in paragraph at lines 764--766 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 766--768 []\T1/pcr/m/n/10 SetInitPrevFromUniformDraw() Overfull \hbox (34.06111pt too wide) in paragraph at lines 766--768 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 768--770 []\T1/pcr/m/n/10 SetMinimalNodeAttributes() Overfull \hbox (34.06111pt too wide) in paragraph at lines 768--770 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 770--772 []\T1/pcr/m/n/10 SetMortalityDistribution() Overfull \hbox (34.06111pt too wide) in paragraph at lines 770--772 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 772--774 []\T1/pcr/m/n/10 SetMortalityRate() Overfull \hbox (34.06111pt too wide) in paragraph at lines 772--774 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 774--776 []\T1/pcr/m/n/10 SetNodeDefaultFromTemplate() Overfull \hbox (34.06111pt too wide) in paragraph at lines 774--776 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 776--778 []\T1/pcr/m/n/10 SetOverdispersion() Overfull \hbox (34.06111pt too wide) in paragraph at lines 776--778 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 778--780 []\T1/pcr/m/n/10 SimpleSusceptibilityDistribution() \T1/ptm/m/n/10 (\T1/ptm/m/i t/10 in Overfull \hbox (46.96086pt too wide) in paragraph at lines 778--780 \T1/ptm/m/it/10 mod-ule emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/ 10 ), Overfull \hbox (34.70026pt too wide) in paragraph at lines 780--782 []\T1/pcr/m/n/10 simulation() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializ ation.dtkFileTools.DtkFileV1 Overfull \hbox (34.70026pt too wide) in paragraph at lines 782--784 []\T1/pcr/m/n/10 simulation() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializ ation.dtkFileTools.DtkFileV2 Overfull \hbox (34.70026pt too wide) in paragraph at lines 784--786 []\T1/pcr/m/n/10 simulation() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializ ation.dtkFileTools.DtkFileV3 Overfull \hbox (2.94016pt too wide) in paragraph at lines 786--787 []\T1/pcr/m/n/10 Snappy \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in emod_api.seria lization.dtkFileSupport\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 787--788 []\T1/pcr/m/n/10 SpatialNode \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 788--790 []\T1/pcr/m/n/10 SpatialReport \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 790--792 []\T1/pcr/m/n/10 StandardDiagnostic() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ul e [65] Overfull \hbox (2.8303pt too wide) in paragraph at lines 792--794 []\T1/pcr/m/n/10 start() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.spatialreport s.spatial.SpatialReport Overfull \hbox (50.83089pt too wide) in paragraph at lines 794--796 []\T1/pcr/m/n/10 start_time() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channelr eports.channels.ChannelReport Overfull \hbox (19.71117pt too wide) in paragraph at lines 796--798 []\T1/pcr/m/n/10 start_time() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channelr eports.channels.Header Overfull \hbox (91.05998pt too wide) in paragraph at lines 798--800 []\T1/pcr/m/n/10 STATIC 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[]\T1/pcr/m/n/10 time_stamp() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channelr eports.channels.Header Overfull \hbox (32.8303pt too wide) in paragraph at lines 815--817 []\T1/pcr/m/n/10 time_steps() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.spatialr eports.spatial.SpatialReport Underfull \hbox (badness 5741) in paragraph at lines 817--819 []\T1/pcr/m/n/10 title() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channelreport s.channels.Channel Overfull \hbox (49.96114pt too wide) in paragraph at lines 820--822 []\T1/pcr/m/n/10 to_dict() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographic s.Demographics.Demographics Overfull \hbox (82.17072pt too wide) in paragraph at lines 822--824 []\T1/pcr/m/n/10 to_dict() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographic s.Demographics.DemographicsOverlay Underfull \hbox (badness 10000) in paragraph at lines 824--825 []\T1/pcr/m/n/10 to_dict() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographic s.Node.Node Overfull \hbox (115.2796pt too wide) in 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(rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc}< /usr/share/texlive/texmf-dist/fonts/type1/urw/courier/ucrr8a.pfb>< /usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmri8a.pfb> Output written on institute-for-disease-modeling-emod-api.pdf (71 pages, 305495 bytes). Transcript written on institute-for-disease-modeling-emod-api.log. Latexmk: Index file 'institute-for-disease-modeling-emod-api.idx' was written Latexmk: References changed. 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s2c.SchemaConfigBuilder( Underfull \hbox (badness 10000) in paragraph at lines 747--747 []\T1/ptm/m/it/10 schema_name=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 schema.json\TS1 /ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 747--747 \T1/ptm/m/it/10 model=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 GENERIC_SIM\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 747--747 \T1/ptm/m/it/10 con-fig_out=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 config.json\TS1/p tm/m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (28.28418pt too wide) in paragraph at lines 758--758 []\T1/ptm/m/it/10 schema_name=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 schema.json\TS1 /ptm/m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (11.09424pt too wide) in paragraph at lines 758--758 \T1/ptm/m/it/10 model=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 GENERIC_SIM\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 758--758 \T1/ptm/m/it/10 con- Underfull \hbox (badness 10000) in paragraph at lines 758--758 \T1/ptm/m/it/10 fig_out=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 config.json\TS1/ptm/m /it/10 '\T1/ptm/m/n/10 , [11] Underfull \hbox (badness 10000) in paragraph at lines 801--801 \T1/ptm/m/it/10 name=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Erewhon\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 825--825 []\T1/ptm/m/it/10 tot_pop\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 825--825 \T1/ptm/m/it/10 num_nodes\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 834--834 []\T1/ptm/m/it/10 tot_pop=1000000\T1/ptm/m/n/10 , \T1/ptm/m/it/10 num_nodes=100 \T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 843--843 []\T1/ptm/m/it/10 input_file\T1/ptm/m/n/10 , \T1/ptm/m/it/10 res=0.008333333333 333333\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 851--851 []\T1/ptm/m/it/10 pop_filename_in\T1/ptm/m/n/10 , Overfull \hbox (28.44351pt too wide) in paragraph at lines 851--851 \T1/ptm/m/it/10 pop_filename_out=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 spatial_grid ded_pop_dir\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 857--857 []\T1/ptm/m/it/10 nodes\T1/ptm/m/n/10 , \T1/ptm/m/it/10 idref=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Gridded Underfull \hbox (badness 10000) in paragraph at lines 857--857 \T1/ptm/m/it/10 world grump2.5arcmin\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , [12] Overfull \hbox (149.53976pt too wide) in paragraph at lines 984--984 []\T1/ptm/m/it/10 distribution: [][]\T1/ptm/m/n/10 emod_api.demographics.Proper tiesAndAttributes.IndividualAttributes.MortalityDistribution[][] Overfull \hbox (94.92032pt too wide) in paragraph at lines 999--999 []\T1/ptm/m/it/10 distribution: [][]\T1/ptm/m/n/10 emod_api.demographics.Proper tiesAndAttributes.IndividualAttributes.AgeDistribution[][], [13] Underfull \hbox (badness 10000) in paragraph at lines 1070--1070 []\T1/ptm/m/it/10 CrudeBirthRate=0.04\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Crude-Mor - Underfull \hbox (badness 10000) in paragraph at lines 1159--1159 []\T1/ptm/m/it/10 file_male\T1/ptm/m/n/10 , \T1/ptm/m/it/10 file_female\T1/ptm/ m/n/10 , \T1/ptm/m/it/10 in-ter-val_fit=[1970, 1980]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1171--1171 []\T1/ptm/m/it/10 nodes=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1171--1171 \T1/ptm/m/it/10 meta_data: [][]dict[][] Overfull \hbox (7.52411pt too wide) in paragraph at lines 1171--1171 \T1/ptm/m/it/10 ual_attributes=None\T1/ptm/m/n/10 , Overfull \hbox (14.18416pt too wide) in paragraph at lines 1171--1171 \T1/ptm/m/it/10 node_attributes=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1171--1171 \T1/ptm/m/it/10 mor-tal- Overfull \hbox (16.5839pt too wide) in paragraph at lines 1171--1171 \T1/ptm/m/it/10 ity_distribution=None\T1/pcr/m/n/10 ) [14] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pcr.fd) Overfull \hbox (18.60422pt too wide) in paragraph at lines 1232--1232 []\T1/ptm/m/it/10 res_in_arcsec\T1/pcr/m/n/10 ) Overfull \hbox (13.07484pt too wide) in paragraph at lines 1251--1251 []\T1/ptm/m/it/10 nodes\T1/ptm/m/n/10 , Overfull \hbox (5.01491pt too wide) in paragraph at lines 1251--1251 \T1/ptm/m/it/10 con- Overfull \hbox (12.23463pt too wide) in paragraph at lines 1251--1251 \T1/ptm/m/it/10 cerns: Overfull \hbox (2.79494pt too wide) in paragraph at lines 1251--1251 \T1/ptm/m/it/10 Op- Overfull \hbox (457.54115pt too wide) in paragraph at lines 1251--1251 \T1/ptm/m/it/10 tional[Union[emod_api.dtk_tools.demographics.DemographicsGenera torConcern.DemographicsGeneratorConcern, Overfull \hbox (429.49101pt too wide) in paragraph at lines 1251--1251 \T1/ptm/m/it/10 List[emod_api.dtk_tools.demographics.DemographicsGeneratorConce rn.DemographicsGeneratorConcern]]] Underfull \hbox (badness 10000) in paragraph at lines 1251--1251 \T1/ptm/m/it/10 = Overfull \hbox (10.85487pt too wide) in paragraph at lines 1251--1251 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (84.4637pt too wide) in paragraph at lines 1251--1251 \T1/ptm/m/it/10 res_in_arcsec=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 custom\TS1/ptm/ m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (115.46402pt too wide) in paragraph at lines 1251--1251 \T1/ptm/m/it/10 node_id_from_lat_long=False\T1/pcr/m/n/10 ) [15] Underfull \hbox (badness 10000) in paragraph at lines 1336--1336 []\T1/ptm/m/it/10 df\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-mo-graph- Underfull \hbox (badness 10000) in paragraph at lines 1336--1336 \T1/ptm/m/it/10 ics_filename: Op- Underfull \hbox (badness 10000) in paragraph at lines 1336--1336 \T1/ptm/m/it/10 tional[[][]str[][]] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1336--1336 \T1/ptm/m/it/10 con-cerns: Op- Overfull \hbox (379.54115pt too wide) in paragraph at lines 1336--1336 \T1/ptm/m/it/10 tional[Union[emod_api.dtk_tools.demographics.DemographicsGenera torConcern.DemographicsGeneratorConcern, Overfull \hbox (351.49101pt too wide) in paragraph at lines 1336--1336 \T1/ptm/m/it/10 List[emod_api.dtk_tools.demographics.DemographicsGeneratorConce rn.DemographicsGeneratorConcern]]] Underfull \hbox (badness 10000) in paragraph at lines 1336--1336 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Overfull \hbox (6.4637pt too wide) in paragraph at lines 1336--1336 \T1/ptm/m/it/10 res_in_arcsec=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 custom\TS1/ptm/ m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (30.83415pt too wide) in paragraph at lines 1336--1336 \T1/ptm/m/it/10 node_id_from_lat_long=True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1336--1336 \T1/ptm/m/it/10 de-fault_population: Underfull \hbox (badness 10000) in paragraph at lines 1336--1336 [][]\T1/ptm/m/it/10 int[][] = 1000\T1/ptm/m/n/10 , Overfull \hbox (79.21327pt too wide) in paragraph at lines 1336--1336 \T1/ptm/m/it/10 load_other_columns_as_attributes=False\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1336--1336 \T1/ptm/m/it/10 tional[List[[][]str[][]]] Underfull \hbox (badness 10000) in paragraph at lines 1336--1336 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ex- Underfull \hbox (badness 10000) in paragraph at lines 1336--1336 \T1/ptm/m/it/10 clude_columns: Underfull \hbox (badness 10000) in paragraph at lines 1336--1336 \T1/ptm/m/it/10 Op-tional[List[[][]str[][]]] Underfull \hbox (badness 10000) in paragraph at lines 1336--1336 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Overfull \hbox (0.89452pt too wide) in paragraph at lines 1336--1336 \T1/ptm/m/it/10 nodeid_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1336--1336 \T1/ptm/m/it/10 Op-tional[[][]str[][]] Underfull \hbox (badness 10000) in paragraph at lines 1336--1336 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lat-i- Underfull \hbox (badness 10000) in paragraph at lines 1336--1336 \T1/ptm/m/it/10 tude_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1336--1336 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 lat\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lon-gi- Underfull \hbox (badness 10000) in paragraph at lines 1336--1336 \T1/ptm/m/it/10 tude_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1336--1336 \T1/ptm/m/it/10 tion_column_name: [16] Overfull \hbox (54.94496pt too wide) in paragraph at lines 1351--1352 []\T1/pcr/b/n/10 apply. If not specified, we use the DefaultWorldBankEquilibriu mConcern [17] Underfull \hbox (badness 10000) in paragraph at lines 1399--1399 []\T1/ptm/m/it/10 population_input_file: Underfull \hbox (badness 10000) in paragraph at lines 1399--1399 [][]\T1/ptm/m/it/10 str[][]\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-mo-graph- Underfull \hbox (badness 7851) in paragraph at lines 1399--1399 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 con-cerns: Op- Overfull \hbox (349.54115pt too wide) in paragraph at lines 1399--1399 \T1/ptm/m/it/10 tional[Union[emod_api.dtk_tools.demographics.DemographicsGenera torConcern.DemographicsGeneratorConcern, Overfull \hbox (321.49101pt too wide) in paragraph at lines 1399--1399 \T1/ptm/m/it/10 List[emod_api.dtk_tools.demographics.DemographicsGeneratorConce rn.DemographicsGeneratorConcern]]] Underfull \hbox (badness 10000) in paragraph at lines 1399--1399 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1399--1399 \T1/ptm/m/it/10 res_in_arcsec=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 custom\TS1/ptm/ m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (0.83415pt too wide) in paragraph at lines 1399--1399 \T1/ptm/m/it/10 node_id_from_lat_long=True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1399--1399 \T1/ptm/m/it/10 de-fault_population: Underfull \hbox (badness 10000) in paragraph at lines 1399--1399 [][]\T1/ptm/m/it/10 int[][] = 1000\T1/ptm/m/n/10 , Overfull \hbox (49.21327pt too wide) in paragraph at lines 1399--1399 \T1/ptm/m/it/10 load_other_columns_as_attributes=False\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1399--1399 \T1/ptm/m/it/10 in-clude_columns: Op- Underfull \hbox (badness 10000) in paragraph at lines 1399--1399 \T1/ptm/m/it/10 tional[List[[][]str[][]]] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1399--1399 \T1/ptm/m/it/10 ex-clude_columns: Op- Underfull \hbox (badness 10000) in paragraph at lines 1399--1399 \T1/ptm/m/it/10 tional[List[[][]str[][]]] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1399--1399 \T1/ptm/m/it/10 nodeid_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1399--1399 \T1/ptm/m/it/10 Op-tional[[][]str[][]] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1399--1399 \T1/ptm/m/it/10 lat-i-tude_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1399--1399 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 lat\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lon-gi- Underfull \hbox (badness 10000) in paragraph at lines 1399--1399 \T1/ptm/m/it/10 tude_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1399--1399 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 lon\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pop-u-la- Underfull \hbox (badness 6236) in paragraph at lines 1399--1399 \T1/ptm/m/it/10 tion_column_name: [][]str[][] = Overfull \hbox (54.94496pt too wide) in paragraph at lines 1414--1415 []\T1/pcr/b/n/10 apply. If not specified, we use the DefaultWorldBankEquilibriu mConcern [18] Overfull \hbox (6.3048pt too wide) in paragraph at lines 1470--1470 []\T1/ptm/m/it/10 lat\T1/ptm/m/n/10 , Overfull \hbox (13.5249pt too wide) in paragraph at lines 1470--1470 \T1/ptm/m/it/10 long\T1/ptm/m/n/10 , Overfull \hbox (115.34473pt too wide) in paragraph at lines 1470--1470 \T1/ptm/m/it/10 res=0.008333333333333333\T1/pcr/m/n/10 ) Overfull \hbox (37.09444pt too wide) in paragraph at lines 1476--1476 []\T1/ptm/m/it/10 nodelist\T1/pcr/m/n/10 ) Overfull \hbox (11.74474pt too wide) in paragraph at lines 1482--1482 []\T1/ptm/m/it/10 node_info\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1482--1482 \T1/ptm/m/it/10 De- Underfull \hbox (badness 10000) in paragraph at lines 1482--1482 \T1/ptm/m/it/10 moDf\T1/ptm/m/n/10 , Overfull \hbox (91.34473pt too wide) in paragraph at lines 1482--1482 \T1/ptm/m/it/10 res=0.008333333333333333\T1/pcr/m/n/10 ) Overfull \hbox (71.74474pt too wide) in paragraph at lines 1488--1488 []\T1/ptm/m/it/10 node_info\T1/ptm/m/n/10 , Overfull \hbox (41.2549pt too wide) in paragraph at lines 1488--1488 \T1/ptm/m/it/10 ex- Overfull \hbox (118.90427pt too wide) in paragraph at lines 1488--1488 \T1/ptm/m/it/10 tra_data_columns=[]\T1/ptm/m/n/10 , Overfull \hbox (151.34473pt too wide) in paragraph at lines 1488--1488 \T1/ptm/m/it/10 res=0.008333333333333333\T1/pcr/m/n/10 ) [19] Underfull \hbox (badness 10000) in paragraph at lines 1528--1530 []\T1/ptm/m/n/10 json ob-ject aka python dict that can be di-rectly passed to D e-mo-graph- Underfull \hbox (badness 10000) in paragraph at lines 1541--1541 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1541--1541 \T1/ptm/m/it/10 mean=0.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1553--1555 []\T1/ptm/m/n/10 json ob-ject aka python dict that can be di-rectly passed to D e-mo-graph- Underfull \hbox (badness 10000) in paragraph at lines 1566--1566 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1572--1574 []\T1/ptm/m/n/10 json ob-ject aka python dict that can be di-rectly passed to D e-mo-graph- Underfull \hbox (badness 10000) in paragraph at lines 1604--1604 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , \T1/ptm/m/it/10 low_prev\T1/ptm/m/n/10 , Underfull \hbox (badness 5091) in paragraph at lines 1604--1604 \T1/ptm/m/it/10 high_prev\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-scrip- Overfull \hbox (22.30493pt too wide) in paragraph at lines 1616--1616 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Overfull \hbox (7.6847pt too wide) in paragraph at lines 1616--1616 \T1/ptm/m/it/10 set- Overfull \hbox (34.0548pt too wide) in paragraph at lines 1616--1616 \T1/ptm/m/it/10 ting=1.0\T1/pcr/m/n/10 ) Overfull \hbox (10.30493pt too wide) in paragraph at lines 1622--1622 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1622--1622 \T1/ptm/m/it/10 pro- Overfull \hbox (58.54413pt too wide) in paragraph at lines 1622--1622 \T1/ptm/m/it/10 tected_setting=0.0\T1/ptm/m/n/10 , Overfull \hbox (9.20457pt too wide) in paragraph at lines 1622--1622 \T1/ptm/m/it/10 thresh- Overfull \hbox (53.51486pt too wide) in paragraph at lines 1622--1622 \T1/ptm/m/it/10 old_age=1825.0\T1/pcr/m/n/10 ) Overfull \hbox (46.30493pt too wide) in paragraph at lines 1628--1628 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Overfull \hbox (42.23488pt too wide) in paragraph at lines 1628--1628 \T1/ptm/m/it/10 mean- Overfull \hbox (44.91478pt too wide) in paragraph at lines 1628--1628 \T1/ptm/m/it/10 AgeAt- Overfull \hbox (28.90492pt too wide) in paragraph at lines 1628--1628 \T1/ptm/m/it/10 In- Overfull \hbox (32.23474pt too wide) in paragraph at lines 1628--1628 \T1/ptm/m/it/10 fec- Overfull \hbox (58.0548pt too wide) in paragraph at lines 1628--1628 \T1/ptm/m/it/10 tion=2.5\T1/pcr/m/n/10 ) [20] Overfull \hbox (55.80493pt too wide) in paragraph at lines 1634--1634 []\T1/ptm/m/it/10 demog\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1640--1640 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1640--1640 \T1/ptm/m/it/10 age_bins\T1/ptm/m/n/10 , Overfull \hbox (25.80493pt too wide) in paragraph at lines 1662--1662 []\T1/ptm/m/it/10 demog\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1680--1681 []\T1/pcr/b/n/10 "15-19", etc. up to "45-49", and a column named "Years" with Overfull \hbox (64.51184pt too wide) in paragraph at lines 1712--1712 [][]\T1/ptm/m/n/10 emod_api.demographics.PropertiesAndAttributes.IndividualAttr ibutes[][] Underfull \hbox (badness 10000) in paragraph at lines 1712--1712 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in-di-vid-ual_properties : Overfull \hbox (65.26187pt too wide) in paragraph at lines 1712--1712 [][]\T1/ptm/m/n/10 emod_api.demographics.PropertiesAndAttributes.IndividualProp erties[][] Underfull \hbox (badness 10000) in paragraph at lines 1712--1712 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 node_attributes: Overfull \hbox (45.31218pt too wide) in paragraph at lines 1712--1712 [][]\T1/ptm/m/n/10 emod_api.demographics.PropertiesAndAttributes.NodeAttributes [][] [21] Overfull \hbox (22.9045pt too wide) in paragraph at lines 1806--1806 []\T1/ptm/m/it/10 nodeid\T1/ptm/m/n/10 , \T1/ptm/m/it/10 res_in_deg=0.041666666 666666664\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1812--1812 []\T1/ptm/m/it/10 lat\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lon\T1/ptm/m/n/10 , Overfull \hbox (9.16464pt too wide) in paragraph at lines 1812--1812 \T1/ptm/m/it/10 res_in_deg=0.041666666666666664\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1818--1818 []\T1/ptm/m/it/10 lat\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lon\T1/ptm/m/n/10 , Overfull \hbox (45.7243pt too wide) in paragraph at lines 1839--1839 []\T1/ptm/m/it/10 distribution\T1/pcr/m/n/10 ) [22] Overfull \hbox (59.95372pt too wide) in paragraph at lines 1868--1868 []\T1/ptm/m/it/10 initial_distribution: Overfull \hbox (21.8143pt too wide) in paragraph at lines 1868--1868 \T1/ptm/m/it/10 List[[][]float[][]] Underfull \hbox (badness 10000) in paragraph at lines 1868--1868 \T1/ptm/m/it/10 = Overfull \hbox (4.85487pt too wide) in paragraph at lines 1868--1868 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (3.0149pt too wide) in paragraph at lines 1868--1868 \T1/ptm/m/it/10 prop- Overfull \hbox (27.15454pt too wide) in paragraph at lines 1868--1868 \T1/ptm/m/it/10 erty=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1868--1868 \T1/ptm/m/it/10 val- Underfull \hbox (badness 10000) in paragraph at lines 1868--1868 \T1/ptm/m/it/10 ues: Overfull \hbox (21.8143pt too wide) in paragraph at lines 1868--1868 \T1/ptm/m/it/10 List[[][]float[][]] Underfull \hbox (badness 10000) in paragraph at lines 1868--1868 \T1/ptm/m/it/10 = Overfull \hbox (4.85487pt too wide) in paragraph at lines 1868--1868 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (1.09485pt too wide) in paragraph at lines 1868--1868 \T1/ptm/m/it/10 tran- Underfull \hbox (badness 10000) in paragraph at lines 1868--1868 \T1/ptm/m/it/10 si- Overfull \hbox (4.02464pt too wide) in paragraph at lines 1868--1868 \T1/ptm/m/it/10 tions: Overfull \hbox (21.8143pt too wide) in paragraph at lines 1868--1868 \T1/ptm/m/it/10 List[[][]float[][]] Underfull \hbox (badness 10000) in paragraph at lines 1868--1868 \T1/ptm/m/it/10 = Overfull \hbox (4.85487pt too wide) in paragraph at lines 1868--1868 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (4.98474pt too wide) in paragraph at lines 1868--1868 \T1/ptm/m/it/10 trans- Underfull \hbox (badness 10000) in paragraph at lines 1868--1868 \T1/ptm/m/it/10 mis- Overfull \hbox (32.35434pt too wide) in paragraph at lines 1868--1868 \T1/ptm/m/it/10 sion_matrix: Overfull \hbox (21.8143pt too wide) in paragraph at lines 1868--1868 \T1/ptm/m/it/10 List[[][]float[][]] Underfull \hbox (badness 10000) in paragraph at lines 1868--1868 \T1/ptm/m/it/10 = Overfull \hbox (8.35487pt too wide) in paragraph at lines 1868--1868 \T1/ptm/m/it/10 None\T1/pcr/m/n/10 ) Overfull \hbox (76.12407pt too wide) in paragraph at lines 1882--1882 []\T1/ptm/m/it/10 individual_property: Overfull \hbox (269.15215pt too wide) in paragraph at lines 1882--1882 [][]\T1/ptm/m/n/10 emod_api.demographics.PropertiesAndAttributes.IndividualProp erty[][] Underfull \hbox (badness 10000) in paragraph at lines 1882--1882 \T1/ptm/m/it/10 = Overfull \hbox (20.35487pt too wide) in paragraph at lines 1882--1882 \T1/ptm/m/it/10 None\T1/pcr/m/n/10 ) Overfull \hbox (109.22414pt too wide) in paragraph at lines 1913--1913 []\T1/ptm/m/it/10 age_distribution_flag=None\T1/ptm/m/n/10 , Overfull \hbox (94.32413pt too wide) in paragraph at lines 1913--1913 \T1/ptm/m/it/10 age_distribution1=None\T1/ptm/m/n/10 , Overfull \hbox (94.32413pt too wide) in paragraph at lines 1913--1913 \T1/ptm/m/it/10 age_distribution2=None\T1/ptm/m/n/10 , Overfull \hbox (89.32413pt too wide) in paragraph at lines 1913--1913 \T1/ptm/m/it/10 age_distribution=None\T1/ptm/m/n/10 , Overfull \hbox (18.82483pt too wide) in paragraph at lines 1913--1913 \T1/ptm/m/it/10 preva- Overfull \hbox (116.0839pt too wide) in paragraph at lines 1913--1913 \T1/ptm/m/it/10 lence_distribution_flag=None\T1/ptm/m/n/10 , Overfull \hbox (18.82483pt too wide) in paragraph at lines 1913--1913 \T1/ptm/m/it/10 preva- Overfull \hbox (101.18388pt too wide) in paragraph at lines 1913--1913 \T1/ptm/m/it/10 lence_distribution1=None\T1/ptm/m/n/10 , Overfull \hbox (18.82483pt too wide) in paragraph at lines 1913--1913 \T1/ptm/m/it/10 preva- Overfull \hbox (101.18388pt too wide) in paragraph at lines 1913--1913 \T1/ptm/m/it/10 lence_distribution2=None\T1/ptm/m/n/10 , Overfull \hbox (6.57483pt too wide) in paragraph at lines 1913--1913 \T1/ptm/m/it/10 im- Overfull \hbox (8.79494pt too wide) in paragraph at lines 1913--1913 \T1/ptm/m/it/10 mu- Overfull \hbox (109.9839pt too wide) in paragraph at lines 1913--1913 \T1/ptm/m/it/10 nity_distribution_flag=None\T1/ptm/m/n/10 , Overfull \hbox (6.57483pt too wide) in paragraph at lines 1913--1913 \T1/ptm/m/it/10 im- Overfull \hbox (8.79494pt too wide) in paragraph at lines 1913--1913 \T1/ptm/m/it/10 mu- Overfull \hbox (95.0839pt too wide) in paragraph at lines 1913--1913 \T1/ptm/m/it/10 nity_distribution1=None\T1/ptm/m/n/10 , Overfull \hbox (6.57483pt too wide) in paragraph at lines 1913--1913 \T1/ptm/m/it/10 im- Overfull \hbox (8.79494pt too wide) in paragraph at lines 1913--1913 \T1/ptm/m/it/10 mu- Overfull \hbox (95.0839pt too wide) in paragraph at lines 1913--1913 \T1/ptm/m/it/10 nity_distribution2=None\T1/ptm/m/n/10 , Overfull \hbox (109.9838pt too wide) in paragraph at lines 1913--1913 \T1/ptm/m/it/10 risk_distribution_flag=None\T1/ptm/m/n/10 , Overfull \hbox (95.08379pt too wide) in paragraph at lines 1913--1913 \T1/ptm/m/it/10 risk_distribution1=None\T1/ptm/m/n/10 , Overfull \hbox (95.08379pt too wide) in paragraph at lines 1913--1913 \T1/ptm/m/it/10 risk_distribution2=None\T1/ptm/m/n/10 , Overfull \hbox (6.57483pt too wide) in paragraph at lines 1913--1913 \T1/ptm/m/it/10 mi- Overfull \hbox (10.31496pt too wide) in paragraph at lines 1913--1913 \T1/ptm/m/it/10 gra- Overfull \hbox (169.32329pt too wide) in paragraph at lines 1913--1913 \T1/ptm/m/it/10 tion_heterogeneity_distribution_flag=None\T1/ptm/m/n/10 , Overfull \hbox (6.57483pt too wide) in paragraph at lines 1913--1913 \T1/ptm/m/it/10 mi- Overfull \hbox (10.31496pt too wide) in paragraph at lines 1913--1913 \T1/ptm/m/it/10 gra- Overfull \hbox (154.42328pt too wide) in paragraph at lines 1913--1913 \T1/ptm/m/it/10 tion_heterogeneity_distribution1=None\T1/ptm/m/n/10 , Overfull \hbox (6.57483pt too wide) in paragraph at lines 1913--1913 \T1/ptm/m/it/10 mi- Overfull \hbox (10.31496pt too wide) in paragraph at lines 1913--1913 \T1/ptm/m/it/10 gra- Overfull \hbox (154.42328pt too wide) in paragraph at lines 1913--1913 \T1/ptm/m/it/10 tion_heterogeneity_distribution2=None\T1/ptm/m/n/10 , Overfull \hbox (12.48488pt too wide) in paragraph at lines 1913--1913 \T1/ptm/m/it/10 mor- Overfull \hbox (7.13475pt too wide) in paragraph at lines 1913--1913 \T1/ptm/m/it/10 tal- Overfull \hbox (85.0839pt too wide) in paragraph at lines 1913--1913 \T1/ptm/m/it/10 ity_distribution=None\T1/ptm/m/n/10 , Overfull \hbox (9.35475pt too wide) in paragraph at lines 1913--1913 \T1/ptm/m/it/10 sus- Overfull \hbox (10.45485pt too wide) in paragraph at lines 1913--1913 \T1/ptm/m/it/10 cep- Overfull \hbox (2.13475pt too wide) in paragraph at lines 1913--1913 \T1/ptm/m/it/10 ti- Overfull \hbox (7.13475pt too wide) in paragraph at lines 1913--1913 \T1/ptm/m/it/10 bil- Overfull \hbox (88.5839pt too wide) in paragraph at lines 1913--1913 \T1/ptm/m/it/10 ity_distribution=None\T1/pcr/m/n/10 ) [23] Underfull \hbox (badness 10000) in paragraph at lines 1918--1918 []\T1/ptm/m/it/10 distribution_values: List[[][]float[][]] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 1932--1932 []\T1/ptm/m/it/10 distribution_values=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-s ult_scale_factor=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 1952--1952 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 axis_units=None\T1/ptm/m /n/10 , \T1/ptm/m/it/10 num_distribution_axes=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1952--1952 \T1/ptm/m/it/10 pop-u-la-tion_groups=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-su lt_scale_factor=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- [24] Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 []\T1/ptm/m/it/10 airport: Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 [][]\T1/ptm/m/it/10 int[][] = Overfull \hbox (4.8247pt too wide) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 tude=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Overfull \hbox (0.98447pt too wide) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 birth_rate: Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 [][]\T1/ptm/m/it/10 float[][] = Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 coun- Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 try=None\T1/ptm/m/n/10 , Overfull \hbox (9.42453pt too wide) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 growth_rate: Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 [][]\T1/ptm/m/it/10 float[][] = Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 lat-i-tude: Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 [][]\T1/ptm/m/it/10 float[][] = Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 lon-gi-tude: Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 [][]\T1/ptm/m/it/10 float[][] = Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 meta-data: Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 [][]\T1/ptm/m/it/10 dict[][] = Overfull \hbox (22.25432pt too wide) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 tial_population: Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 [][]\T1/ptm/m/it/10 int[][] = Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 sea-port: Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 [][]\T1/ptm/m/it/10 int[][] = Overfull \hbox (50.58374pt too wide) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 val_habitat_multiplier: Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 List[[][]float[][]] Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 ini- Overfull \hbox (86.9334pt too wide) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 tial_vectors_per_species=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 in-fec-tiv- Overfull \hbox (15.02396pt too wide) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 ity_multiplier: Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 [][]\T1/ptm/m/it/10 float[][] = Overfull \hbox (15.23419pt too wide) in paragraph at lines 1987--1987 \T1/ptm/m/it/10 tra_attributes: Underfull \hbox (badness 10000) in paragraph at lines 1987--1987 [][]\T1/ptm/m/it/10 dict[][] = [25] [26] Underfull \hbox (badness 10000) in paragraph at lines 2058--2059 []\T1/pcr/b/n/10 distribution \T1/ptm/m/n/10 ^^U The se-lected dis-tri-bu-tion (need to come from Underfull \hbox (badness 10000) in paragraph at lines 2078--2078 []\T1/ptm/m/it/10 filename\T1/ptm/m/n/10 , \T1/ptm/m/it/10 dis-tri-bu-tion\T1/p tm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2079--2080 \T1/ptm/m/n/10 Set the \T1/pcr/m/n/10 ImmunityDistributionFlag\T1/ptm/m/n/10 , \T1/pcr/m/n/10 ImmunityDistribution1 \T1/ptm/m/n/10 and Underfull \hbox (badness 10000) in paragraph at lines 2106--2106 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2106--2106 \T1/ptm/m/it/10 fn\T1/ptm/m/n/10 , [27] Underfull \hbox (badness 10000) in paragraph at lines 2176--2176 []\T1/ptm/m/it/10 cb\T1/ptm/m/n/10 , Overfull \hbox (28.70406pt too wide) in paragraph at lines 2176--2176 \T1/ptm/m/it/10 use_existing=False\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 2202--2202 []\T1/ptm/m/it/10 cb\T1/ptm/m/n/10 , Overfull \hbox (34.70406pt too wide) in paragraph at lines 2202--2202 \T1/ptm/m/it/10 use_existing=False\T1/pcr/m/n/10 ) [28] Underfull \hbox (badness 10000) in paragraph at lines 2274--2274 []\T1/ptm/m/it/10 point\T1/ptm/m/n/10 , Overfull \hbox (37.41425pt too wide) in paragraph at lines 2274--2274 \T1/ptm/m/it/10 grid_id_2_cell_id\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2315--2315 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Event_Trigger\T1/ptm/m/n /10 , Overfull \hbox (73.22345pt too wide) in paragraph at lines 2315--2315 \T1/ptm/m/it/10 Node_Selection_Type=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 DISTANCE_ ONLY\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (57.50374pt too wide) in paragraph at lines 2315--2315 \T1/ptm/m/it/10 Max_Distance_To_Other_Nodes_Km=- [29] Underfull \hbox (badness 10000) in paragraph at lines 2350--2350 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 In-ter-ven- Underfull \hbox (badness 10000) in paragraph at lines 2393--2394 []\T1/pcr/b/n/10 but without the distribution, which is inferred. E.g., Underfull \hbox (badness 10000) in paragraph at lines 2414--2414 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Event_Or_Config=\TS1/ptm /m/it/10 '\T1/ptm/m/it/10 Event\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/ 10 Con-fig=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2414--2414 \T1/ptm/m/it/10 Event=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 NoTrigger\TS1/ptm/m/it/ 10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Ten-dency=1.0\T1/ptm/m/n/10 , \T1/ptm/m/it /10 Sin-gle_Use=True\T1/ptm/m/n/10 , [30] Underfull \hbox (badness 10000) in paragraph at lines 2458--2458 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Trig-gers\T1/ptm/m/n/10 , \T1/ptm/m/it/10 In-ter-ven-tions\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Prop- Underfull \hbox (badness 10000) in paragraph at lines 2458--2458 \T1/ptm/m/it/10 erty_Restrictions=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 De-mo- Underfull \hbox (badness 10000) in paragraph at lines 2458--2458 \T1/ptm/m/it/10 graphic_Coverage=1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar-get_Ag e_Min=0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar- Underfull \hbox (badness 10000) in paragraph at lines 2458--2458 \T1/ptm/m/it/10 get_Age_Max=45625\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar-get_Gende r=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 All\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/p tm/m/it/10 Tar- Underfull \hbox (badness 10000) in paragraph at lines 2458--2458 \T1/ptm/m/it/10 get_Residents_Only=1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Duration=- 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Black- Underfull \hbox (badness 10000) in paragraph at lines 2458--2458 \T1/ptm/m/it/10 out_Event_Trigger=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Black-ou t_Period=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2458--2458 \T1/ptm/m/it/10 Black-out_On_First_Occurrence=None\T1/ptm/m/n/10 , \T1/ptm/m/it /10 Dis-qual-i-fy- Underfull \hbox (badness 10000) in paragraph at lines 2520--2520 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar-get_Property_Key\T1/ ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2520--2520 \T1/ptm/m/it/10 Tar-get_Property_Value\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2520--2520 \T1/ptm/m/it/10 Daily_Probability=1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Max- Underfull \hbox (badness 10000) in paragraph at lines 2520--2520 \T1/ptm/m/it/10 i-mum_Duration=1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Revert=- Underfull \hbox (badness 10000) in paragraph at lines 2520--2520 \T1/ptm/m/it/10 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 In-ter-ven-tion_Name=\TS1/ptm /m/it/10 ''\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2520--2520 \T1/ptm/m/it/10 Event_Trigger_Distributed=\TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , [31] Underfull \hbox (badness 10000) in paragraph at lines 2528--2529 []\T1/pcr/b/n/10 The key part of the new key-value pair of the IP. Underfull \hbox (badness 10000) in paragraph at lines 2531--2532 []\T1/pcr/b/n/10 The value part of the new key-value pair of the IP. Underfull \hbox (badness 10000) in paragraph at lines 2537--2538 []\T1/pcr/b/n/10 The daily probability that an individual will move to the Underfull \hbox (badness 10000) in paragraph at lines 2540--2541 []\T1/pcr/b/n/10 The maximum amount of time individuals have to move Underfull \hbox (badness 10000) in paragraph at lines 2540--2541 \T1/pcr/b/n/10 to a new group. This timing works in conjunction with Underfull \hbox (badness 10000) in paragraph at lines 2543--2544 []\T1/pcr/b/n/10 The number of days before an individual moves back to their Underfull \hbox (badness 10000) in paragraph at lines 2546--2547 []\T1/pcr/b/n/10 Optional Intervention_Name. Useful if managing a replacement Underfull \hbox (badness 10000) in paragraph at lines 2549--2550 []\T1/pcr/b/n/10 Optional broadcast trigger to be published when PVC is Underfull \hbox (badness 10000) in paragraph at lines 2552--2553 []\T1/pcr/b/n/10 Optional broadcast trigger to be published when PVC is Underfull \hbox (badness 10000) in paragraph at lines 2570--2570 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Start_Day: [][]int[][]\T 1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2570--2570 \T1/ptm/m/it/10 Node_Ids=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Node- Underfull \hbox (badness 10000) in paragraph at lines 2570--2570 \T1/ptm/m/it/10 set_Config=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Num- Underfull \hbox (badness 10000) in paragraph at lines 2570--2570 \T1/ptm/m/it/10 ber_Repetitions: [][]int[][] = 1\T1/ptm/m/n/10 , Overfull \hbox (4.90335pt too wide) in paragraph at lines 2570--2570 \T1/ptm/m/it/10 Timesteps_Between_Repetitions: Underfull \hbox (badness 10000) in paragraph at lines 2570--2570 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Sched-uled_Campaign_Event\TS1/ptm/m/it/10 '\T 1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2570--2570 \T1/ptm/m/it/10 Prop-erty_Restrictions=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2570--2570 \T1/ptm/m/it/10 = 1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar-get_Age_Min=0\T1/ptm/ m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2570--2570 \T1/ptm/m/it/10 Tar-get_Age_Max=45625\T1/ptm/m/n/10 , [32] Underfull \hbox (badness 10000) in paragraph at lines 2637--2637 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Start_Day: [][]int[][]\T 1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2637--2637 \T1/ptm/m/it/10 List[[][]str[][]]\T1/ptm/m/n/10 , \T1/ptm/m/it/10 In-ter-ven-ti on_List: Underfull \hbox (badness 10000) in paragraph at lines 2637--2637 \T1/ptm/m/it/10 List[[][]dict[][]]\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Node_Ids=Non e\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2637--2637 \T1/ptm/m/it/10 Node-set_Config=None\T1/ptm/m/n/10 , Overfull \hbox (17.59343pt too wide) in paragraph at lines 2637--2637 \T1/ptm/m/it/10 Node_Property_Restrictions=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2637--2637 \T1/ptm/m/it/10 Prop-erty_Restrictions=None\T1/ptm/m/n/10 , Overfull \hbox (4.90335pt too wide) in paragraph at lines 2637--2637 \T1/ptm/m/it/10 Timesteps_Between_Repetitions: Underfull \hbox (badness 10000) in paragraph at lines 2637--2637 [][]\T1/ptm/m/it/10 int[][] = - 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 De-mo- Underfull \hbox (badness 10000) in paragraph at lines 2637--2637 \T1/ptm/m/it/10 graphic_Coverage: [][]float[][] Underfull \hbox (badness 10000) in paragraph at lines 2637--2637 \T1/ptm/m/it/10 = 1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar-get_Age_Min=0\T1/ptm/ m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2637--2637 \T1/ptm/m/it/10 Tar-get_Age_Max=45625\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2637--2637 \T1/ptm/m/it/10 Tar-get_Residents_Only=1\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2637--2637 \T1/ptm/m/it/10 Duration=- 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Black- Underfull \hbox (badness 10000) in paragraph at lines 2637--2637 \T1/ptm/m/it/10 Black-out_Period=0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Black- Underfull \hbox (badness 10000) in paragraph at lines 2637--2637 \T1/ptm/m/it/10 out_On_First_Occurrence=0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2637--2637 \T1/ptm/m/it/10 Dis-qual-i-fy- Underfull \hbox (badness 10000) in paragraph at lines 2637--2637 \T1/ptm/m/it/10 ing_Properties=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 De- [33] Underfull \hbox (badness 6078) in paragraph at lines 2725--2725 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Base_Sensitivity: [][]fl oat[][] = Underfull \hbox (badness 10000) in paragraph at lines 2725--2725 \T1/ptm/m/it/10 Event_Trigger_Distributed: [][]str[][] Underfull \hbox (badness 10000) in paragraph at lines 2725--2725 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Event_Trigger_Expired: Underfull \hbox (badness 10000) in paragraph at lines 2725--2725 [][]\T1/ptm/m/it/10 str[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Pos-i- Underfull \hbox (badness 10000) in paragraph at lines 2725--2725 \T1/ptm/m/it/10 tive_Diagnosis_Intervention=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2725--2725 \T1/ptm/m/it/10 Pos-i-tive_Diagnosis_Event: Underfull \hbox (badness 10000) in paragraph at lines 2725--2725 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Pos-i-tiveRe-su lt\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Neg-a- Underfull \hbox (badness 10000) in paragraph at lines 2725--2725 \T1/ptm/m/it/10 tive_Diagnosis_Intervention=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2725--2725 \T1/ptm/m/it/10 Neg-a-tive_Diagnosis_Event: Underfull \hbox (badness 10000) in paragraph at lines 2725--2725 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Neg-a-tiveRe-su lt\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Treat- [34] Underfull \hbox (badness 10000) in paragraph at lines 2779--2779 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2779--2779 \T1/ptm/m/it/10 trig-ger\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-lay\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2779--2779 \T1/ptm/m/it/10 in-ter-ven-tion\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2779--2779 \T1/ptm/m/it/10 ip_targeting=[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2793--2794 []\T1/pcr/b/n/10 without the distribution, which is inferred. E.g., { Underfull \hbox (badness 10000) in paragraph at lines 2816--2816 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2816--2816 \T1/ptm/m/it/10 new_ip_key\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2816--2816 \T1/ptm/m/it/10 new_ip_value\T1/ptm/m/n/10 , Overfull \hbox (25.72469pt too wide) in paragraph at lines 2816--2816 \T1/ptm/m/it/10 change_age_in_days\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2816--2816 \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 2816--2816 \T1/ptm/m/it/10 vert_in_days\T1/ptm/m/n/10 , Overfull \hbox (8.6443pt too wide) in paragraph at lines 2816--2816 \T1/ptm/m/it/10 ip_targeting_key\T1/ptm/m/n/10 , Overfull \hbox (17.38419pt too wide) in paragraph at lines 2816--2816 \T1/ptm/m/it/10 ip_targeting_value\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2816--2816 \T1/ptm/m/it/10 cov-er- [35] Underfull \hbox (badness 10000) in paragraph at lines 2875--2875 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 nodeto\T1/ptm/m/n/10 , \ T1/ptm/m/it/10 start_day: Underfull \hbox (badness 8056) in paragraph at lines 2875--2875 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age: [][ ]float[][] Underfull \hbox (badness 7851) in paragraph at lines 2875--2875 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar-get_age: [][]dict[][ ] Underfull \hbox (badness 10000) in paragraph at lines 2875--2875 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 nodes_from_ids: Underfull \hbox (badness 10000) in paragraph at lines 2875--2875 \T1/ptm/m/it/10 List[[][]int[][]] = None\T1/ptm/m/n/10 , Overfull \hbox (5.56337pt too wide) in paragraph at lines 2875--2875 \T1/ptm/m/it/10 ind_property_restrictions=None\T1/ptm/m/n/10 , Overfull \hbox (12.22342pt too wide) in paragraph at lines 2875--2875 \T1/ptm/m/it/10 node_property_restrictions=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2875--2875 \T1/ptm/m/it/10 trig-gered_campaign_delay=0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2875--2875 \T1/ptm/m/it/10 trig-ger_condition_list=None\T1/ptm/m/n/10 , [36] Underfull \hbox (badness 10000) in paragraph at lines 2904--2908 []\T1/ptm/m/n/10 {^^PDuration_Before_Leaving_Distribution^^Q:^^QGAUSSIAN_DISTRI BUTION^^Q, Underfull \hbox (badness 10000) in paragraph at lines 2904--2908 \T1/ptm/m/n/10 ^^PDu-ra-tion_Before_Leaving_Gaussian_Mean^^Q: 14, ^^PDu- Underfull \hbox (badness 10000) in paragraph at lines 2904--2908 \T1/ptm/m/n/10 ra-tion_Before_Leaving_Gaussian_Std_Dev^^Q 3} {^^PDu-ra- Underfull \hbox (badness 10000) in paragraph at lines 2904--2908 \T1/ptm/m/n/10 tion_Before_Leaving_Distribution^^Q:^^QPOISSON_DISTRIBUTION^^Q, ^^PDu-ra- Underfull \hbox (badness 10000) in paragraph at lines 2917--2920 []\T1/ptm/m/n/10 {^^PDuration_At_Node_Distribution^^Q:^^QGAUSSIAN_DISTRIBUTION^ ^Q, ^^PDu-ra- Underfull \hbox (badness 10000) in paragraph at lines 2917--2920 \T1/ptm/m/n/10 tion_At_Node_Gaussian_Mean^^Q: 14, ^^PDu-ra-tion_At_Node_Gaussia n_Std_Dev^^Q Underfull \hbox (badness 10000) in paragraph at lines 2917--2920 \T1/ptm/m/n/10 3} {^^PDu-ra-tion_At_Node_Distribution^^Q:^^QPOISSON_DISTRIBUTIO N^^Q, ^^PDu-ra- Overfull \hbox (19.69089pt too wide) in paragraph at lines 2964--2968 \T1/ptm/m/n/10 from emod_api im-port cam-paign as camp dan = {^^PDu-ra-tion_At_ Node_Distribution^^Q:^^QPOISSON_DISTRIBUTION^^Q, Overfull \hbox (57.24088pt too wide) in paragraph at lines 2964--2968 \T1/ptm/m/n/10 ^^PDu-ra-tion_At_Node_Poisson_Mean^^Q 30} dbl = {^^PDu-ra-tion_B efore_Leaving_Distribution^^Q:^^QGAUSSIAN_DISTRIBUTION^^Q, Underfull \hbox (badness 10000) in paragraph at lines 2969--2974 [] [37] Underfull \hbox (badness 10000) in paragraph at lines 2985--2985 \T1/ptm/m/it/10 pro-file=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 CONST\TS1/ptm/m/it/1 0 '\T1/ptm/m/n/10 , ! LaTeX Error: Too deeply nested. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.2994 ...{CONST(ANT)}] \leavevmode\begin{itemize} Underfull \hbox (badness 10000) in paragraph at lines 3056--3056 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day=1\T1/ptm/m/n/1 0 , Underfull \hbox (badness 10000) in paragraph at lines 3056--3056 \T1/ptm/m/it/10 new_infectivity=1.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3056--3056 \T1/ptm/m/it/10 pro-file=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 CONST\TS1/ptm/m/it/1 0 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3056--3056 \T1/ptm/m/it/10 node_ids=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3056--3056 \T1/ptm/m/it/10 re-cur-ring=True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3064--3064 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3075--3075 \T1/ptm/m/it/10 age=0.01\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ig-nore_immunity=None\ T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3084--3084 []\T1/ptm/m/it/10 campaign_builder\T1/ptm/m/n/10 , \T1/ptm/m/it/10 timestep\T1/ ptm/m/n/10 , [38] Underfull \hbox (badness 10000) in paragraph at lines 3118--3118 \T1/ptm/m/it/10 ef-fi-cacy=1.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3118--3118 \T1/ptm/m/it/10 sv_name=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Vaccine\TS1/ptm/m/it/ 10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3118--3118 \T1/ptm/m/it/10 wan-ing_duration=100\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3118--3118 \T1/ptm/m/it/10 d_a_d=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3118--3118 \T1/ptm/m/it/10 cost_to_consumer=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3118--3118 \T1/ptm/m/it/10 e_i_r=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in-ter-ven- Underfull \hbox (badness 10000) in paragraph at lines 3139--3139 []\T1/ptm/m/it/10 timestep\T1/ptm/m/n/10 , \T1/ptm/m/it/10 file- Underfull \hbox (badness 10000) in paragraph at lines 3156--3156 []\T1/ptm/m/it/10 schema_path\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ini-tial=1.0\T1/p tm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3156--3156 \T1/ptm/m/it/10 box_duration=365\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de- [39] [40] Underfull \hbox (badness 5548) in paragraph at lines 3263--3266 []\T1/ptm/m/n/10 EMOD/DTK for-mat mi-gra-tion files (and as-so-ci-ated meta-dat a files) can be writ-ten with mi-gra- [41] Underfull \hbox (badness 10000) in paragraph at lines 3529--3529 \T1/ptm/m/it/10 num_nodes=100\T1/ptm/m/n/10 , \T1/ptm/m/it/10 mig_factor=1.0\T1 /ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3529--3529 \T1/ptm/m/it/10 frac_rural=0.3\T1/ptm/m/n/10 , \T1/ptm/m/it/10 id_ref=\TS1/ptm/ m/it/10 '\T1/ptm/m/it/10 from_params\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm/ m/it/10 mi- Overfull \hbox (68.98433pt too wide) in paragraph at lines 3540--3540 []\T1/ptm/m/it/10 demographics_file_path: Underfull \hbox (badness 10000) in paragraph at lines 3540--3540 [][]\T1/ptm/m/it/10 str[][]\T1/ptm/m/n/10 , Overfull \hbox (2.42482pt too wide) in paragraph at lines 3540--3540 \T1/ptm/m/it/10 params: Underfull \hbox (badness 10000) in paragraph at lines 3540--3540 [][]\T1/ptm/m/it/10 str[][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3540--3540 \T1/ptm/m/it/10 id_ref: Underfull \hbox (badness 10000) in paragraph at lines 3540--3540 [][]\T1/ptm/m/it/10 str[][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3540--3540 \T1/ptm/m/it/10 mi-gra- Overfull \hbox (24.21457pt too wide) in paragraph at lines 3540--3540 \T1/ptm/m/it/10 tion_type=1\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 3540--3540 \OMS/cmsy/m/n/10 !$ Overfull \hbox (135.19371pt too wide) in paragraph at lines 3540--3540 [][]\T1/ptm/m/it/10 emod_api.migration.migration.Migration[][] [42] Overfull \hbox (2.15437pt too wide) in paragraph at lines 3568--3568 []\T1/ptm/m/it/10 demographics_file_path\T1/ptm/m/n/10 , Overfull \hbox (24.70302pt too wide) in paragraph at lines 3622--3622 []\T1/ptm/m/it/10 path_to_binary\T1/ptm/m/n/10 , \T1/ptm/m/it/10 path_to_write_ schema=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 schema.json\TS1/ptm/m/it/10 '\T1/pcr/m /n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 3643--3643 []\T1/ptm/m/it/10 input_serpop_path\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3643--3643 \T1/ptm/m/it/10 mod_fn=None\T1/ptm/m/n/10 , [43] Underfull \hbox (badness 10000) in paragraph at lines 3664--3664 []\T1/ptm/m/it/10 file: [44] Underfull \hbox (badness 10000) in paragraph at lines 3790--3790 []\T1/ptm/m/it/10 name: [][]str[][]\T1/ptm/m/n/10 , \T1/ptm/m/it/10 han-dle\T1/ ptm/m/n/10 , \T1/ptm/m/it/10 cur- Underfull \hbox (badness 10000) in paragraph at lines 3825--3825 []\T1/ptm/m/it/10 handle\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cur- [45] Underfull \hbox (badness 7203) in paragraph at lines 3954--3954 \T1/ptm/m/it/10 True, \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 date\TS1/ptm/m/it/10 '\ T1/ptm/m/it/10 : \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Wed Feb 09 Underfull \hbox (badness 5050) in paragraph at lines 3954--3954 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 tool\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 : \TS1/ ptm/m/it/10 '\T1/ptm/m/it/10 dtk-File-Tools.py\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 , \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 ver- [46] [47] Underfull \hbox (badness 10000) in paragraph at lines 4188--4188 \T1/ptm/m/it/10 List[[][]int[][]] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 data: Underfull \hbox (badness 10000) in paragraph at lines 4188--4188 \T1/ptm/m/it/10 numpy.array = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start: [48] [49] [50] [51] [52] Chapter 4. [53] [54] Overfull \hbox (66.6225pt too wide) in paragraph at lines 4727--4728 []\T1/pcr/m/n/10 emod_api.config.default_from_schema_no_validation\T1/ptm/m/n/1 0 , Overfull \hbox (36.6225pt too wide) in paragraph at lines 4728--4729 []\T1/pcr/m/n/10 emod_api.config.dtk_post_process_adhocevents\T1/ptm/m/n/10 , Overfull \hbox (30.6225pt too wide) in paragraph at lines 4729--4730 []\T1/pcr/m/n/10 emod_api.config.dtk_pre_process_adhocevents\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4730--4731 []\T1/pcr/m/n/10 emod_api.config.dtk_pre_process_w5ml\T1/ptm/m/n/10 , Overfull \hbox (12.6225pt too wide) in paragraph at lines 4738--4739 []\T1/pcr/m/n/10 emod_api.demographics.demographics_utils\T1/ptm/m/n/10 , Overfull \hbox (30.6225pt too wide) in paragraph at lines 4739--4740 []\T1/pcr/m/n/10 emod_api.demographics.DemographicsGenerator\T1/ptm/m/n/10 , Overfull \hbox (72.6225pt too wide) in paragraph at lines 4740--4741 []\T1/pcr/m/n/10 emod_api.demographics.DemographicsInputDataParsers\T1/ptm/m/n/ 10 , Overfull \hbox (30.6225pt too wide) in paragraph at lines 4741--4742 []\T1/pcr/m/n/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 , Overfull \hbox (6.6225pt too wide) in paragraph at lines 4742--4743 []\T1/pcr/m/n/10 emod_api.demographics.grid_construction\T1/ptm/m/n/10 , Overfull \hbox (42.6225pt too wide) in paragraph at lines 4744--4745 []\T1/pcr/m/n/10 emod_api.demographics.PreDefinedDistributions\T1/ptm/m/n/10 , Overfull \hbox (42.6225pt too wide) in paragraph at lines 4745--4746 []\T1/pcr/m/n/10 emod_api.demographics.PropertiesAndAttributes\T1/ptm/m/n/10 , Overfull \hbox (0.6225pt too wide) in paragraph at lines 4749--4750 []\T1/pcr/m/n/10 emod_api.interventions.import_pressure\T1/ptm/m/n/10 , Overfull \hbox (0.6225pt too wide) in paragraph at lines 4751--4752 []\T1/pcr/m/n/10 emod_api.interventions.node_multiplier\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4753--4754 []\T1/pcr/m/n/10 emod_api.interventions.simple_vaccine\T1/ptm/m/n/10 , Overfull \hbox (6.6225pt too wide) in paragraph at lines 4760--4761 []\T1/pcr/m/n/10 emod_api.schema.dtk_post_process_schema\T1/ptm/m/n/10 , Overfull \hbox (0.6225pt too wide) in paragraph at lines 4764--4765 []\T1/pcr/m/n/10 emod_api.serialization.CensusAndModPop\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4765--4766 []\T1/pcr/m/n/10 emod_api.serialization.dtkFileSupport\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4767--4768 []\T1/pcr/m/n/10 emod_api.serialization.dtkFileUtility\T1/ptm/m/n/10 , Overfull \hbox (30.6225pt too wide) in paragraph at lines 4768--4769 []\T1/pcr/m/n/10 emod_api.serialization.SerializedPopulation\T1/ptm/m/n/10 , [55] (./institute-for-disease-modeling-emod-api.ind [56] Overfull \hbox (88.70953pt too wide) in paragraph at lines 8--10 []\T1/pcr/m/n/10 add() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Pr opertiesAndAttributes.IndividualProperties Underfull \hbox (badness 10000) in paragraph at lines 11--13 []\T1/pcr/m/n/10 add_migration_event() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-u le Overfull \hbox (148.70953pt too wide) in paragraph at lines 13--15 []\T1/pcr/m/n/10 add_parameter() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demog raphics.PropertiesAndAttributes.IndividualProperties Overfull \hbox (61.87129pt too wide) in paragraph at lines 15--17 []\T1/pcr/m/n/10 add_parameter() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demog raphics.Updateable.Updateable Underfull \hbox (badness 10000) in paragraph at lines 17--19 []\T1/pcr/m/n/10 AddAgeDependentTransmission() Overfull \hbox (34.06111pt too wide) in paragraph at lines 17--19 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 19--21 []\T1/pcr/m/n/10 AddIndividualPropertyAndHINT() Overfull \hbox (34.06111pt too wide) in paragraph at lines 19--21 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 21--23 []\T1/pcr/m/n/10 AgeStructureUNWPP() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (15.62103pt too wide) in paragraph at lines 21--23 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Overfull \hbox (7.30118pt too wide) in paragraph at lines 23--25 []\T1/pcr/m/n/10 AgesYears() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration .migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 25--26 []\T1/pcr/m/n/10 AIR \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.migrati on.Migration at- Overfull \hbox (37.49991pt too wide) in paragraph at lines 26--28 []\T1/pcr/m/n/10 append() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializatio n.dtkFileTools.DtkFile.Contents Overfull \hbox (32.4899pt too wide) in paragraph at lines 28--30 []\T1/pcr/m/n/10 append() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializatio n.dtkFileTools.DtkFile.Objects Underfull \hbox (badness 10000) in paragraph at lines 30--32 []\T1/pcr/m/n/10 application() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (7.95116pt too wide) in paragraph at lines 30--32 \T1/ptm/m/it/10 emod_api.config.dtk_post_process_adhocevents\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 32--34 []\T1/pcr/m/n/10 application() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (4.2412pt too wide) in paragraph at lines 32--34 \T1/ptm/m/it/10 emod_api.config.dtk_pre_process_adhocevents\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 34--36 []\T1/pcr/m/n/10 application() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 34--36 \T1/ptm/m/it/10 emod_api.config.dtk_pre_process_w5ml\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 36--38 []\T1/pcr/m/n/10 application() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 36--38 \T1/ptm/m/it/10 emod_api.schema.dtk_post_process_schema\T1/ptm/m/n/10 ), Overfull \hbox (85.96114pt too wide) in paragraph at lines 38--40 []\T1/pcr/m/n/10 apply_overlay() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demog raphics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 40--42 []\T1/pcr/m/n/10 apply_to_defaults_or_nodes() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 i n mod-ule Underfull \hbox (badness 10000) in paragraph at lines 40--42 \T1/ptm/m/it/10 emod_api.demographics.demographics_utils\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 42--44 []\T1/pcr/m/n/10 arcsec_to_deg() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (17.1711pt too wide) in paragraph at lines 42--44 \T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/ptm/m/n/10 ), Overfull \hbox (62.83089pt too wide) in paragraph at lines 44--46 []\T1/pcr/m/n/10 as_dataframe() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channe lreports.channels.ChannelReport Overfull \hbox (41.61118pt too wide) in paragraph at lines 46--48 []\T1/pcr/m/n/10 as_dictionary() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.chann elreports.channels.Channel Overfull \hbox (37.71117pt too wide) in paragraph at lines 48--50 []\T1/pcr/m/n/10 as_dictionary() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.chann elreports.channels.Header Underfull \hbox (badness 10000) in paragraph at lines 52--54 []\T1/pcr/m/n/10 Author() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.mi gration.Migration Underfull \hbox (badness 10000) in paragraph at lines 61--63 []\T1/pcr/m/n/10 BaseInputFile \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 61--63 \T1/ptm/m/it/10 emod_api.demographics.BaseInputFile\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 63--64 []\T1/pcr/m/n/10 basicNode() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 64--66 []\T1/pcr/m/n/10 birth_rate() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demograp hics.Node.Node Underfull \hbox (badness 10000) in paragraph at lines 66--68 []\T1/pcr/m/n/10 BroadcastEvent() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 68--70 []\T1/pcr/m/n/10 BroadcastEventToOtherNodes() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 i n mod-ule Overfull \hbox (23.59027pt too wide) in paragraph at lines 71--73 []\T1/pcr/m/n/10 byte_count() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializ ation.dtkFileTools.DtkFile Underfull \hbox (badness 7291) in paragraph at lines 76--78 []\T1/pcr/m/n/10 change_individual_property_at_age() \T1/ptm/m/n/10 (\T1/ptm/m/ it/10 in Underfull \hbox (badness 10000) in paragraph at lines 78--80 []\T1/pcr/m/n/10 change_ser_pop() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 78--80 \T1/ptm/m/it/10 emod_api.serialization.CensusAndModPop\T1/ptm/m/n/10 ), [57] Overfull \hbox (68.83089pt too wide) in paragraph at lines 81--83 []\T1/pcr/m/n/10 channel_names() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.chann elreports.channels.ChannelReport Underfull \hbox (badness 10000) in paragraph at lines 83--85 []\T1/pcr/m/n/10 ChannelReport \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Overfull \hbox (38.83089pt too wide) in paragraph at lines 85--87 []\T1/pcr/m/n/10 channels() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channelrep orts.channels.ChannelReport Overfull \hbox (29.59027pt too wide) in paragraph at lines 87--89 []\T1/pcr/m/n/10 chunk_count() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.seriali zation.dtkFileTools.DtkFile Overfull \hbox (29.59027pt too wide) in paragraph at lines 89--91 []\T1/pcr/m/n/10 chunk_sizes() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.seriali zation.dtkFileTools.DtkFile Overfull \hbox (36.91025pt too wide) in paragraph at lines 93--95 []\T1/pcr/m/n/10 compress() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializat 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class in Overfull \hbox (14.56071pt too wide) in paragraph at lines 105--107 \T1/ptm/m/it/10 emod_api.demographics.PreDefinedDistributions\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 107--109 []\T1/pcr/m/n/10 construct() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 107--109 \T1/ptm/m/it/10 emod_api.demographics.grid_construction\T1/ptm/m/n/10 ), Overfull \hbox (46.65079pt too wide) in paragraph at lines 109--111 \T1/ptm/m/it/10 emod_api.demographics.DemographicsInputDataParsers\T1/ptm/m/n/1 0 ), Overfull \hbox (97.2796pt too wide) in paragraph at lines 111--113 []\T1/pcr/m/n/10 copy() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.P reDefinedDistributions.ConstantDistribution Overfull \hbox (12.84114pt too wide) in paragraph at lines 113--115 []\T1/pcr/m/n/10 creation_date() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.weath er.weather.Metadata Overfull \hbox (7.47115pt too wide) in paragraph at lines 115--117 []\T1/pcr/m/n/10 creation_date() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.weath er.weather.Weather Underfull \hbox (badness 10000) in paragraph at lines 120--122 []\T1/pcr/m/n/10 data() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channelreports .channels.Channel Underfull \hbox (badness 10000) in paragraph at lines 122--124 []\T1/pcr/m/n/10 data() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.spatialreports .spatial.SpatialNode Underfull \hbox (badness 10000) in paragraph at lines 128--130 []\T1/pcr/m/n/10 datavalue_count() Underfull \hbox (badness 10000) in paragraph at lines 128--130 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.weather.weather.Metadata prop- Underfull \hbox (badness 10000) in paragraph at lines 130--132 []\T1/pcr/m/n/10 datavalue_count() Underfull \hbox (badness 10000) in paragraph at lines 130--132 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.weather.weather.Weather prop- Overfull \hbox (20.22127pt too wide) in paragraph at lines 132--134 []\T1/pcr/m/n/10 DatavalueCount() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migr ation.migration.Layer Overfull \hbox (37.30118pt too wide) in paragraph at lines 134--136 []\T1/pcr/m/n/10 DatavalueCount() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migr ation.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 136--138 []\T1/pcr/m/n/10 date() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serialization. dtkFileTools.DtkFile Overfull \hbox (19.30118pt too wide) in paragraph at lines 138--140 []\T1/pcr/m/n/10 DateCreated() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migrati on.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 140--142 []\T1/pcr/m/n/10 default_population Underfull \hbox (badness 10000) in paragraph at lines 140--142 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Node.Node at- Underfull \hbox (badness 7291) in paragraph at lines 142--144 []\T1/pcr/m/n/10 DefaultSusceptibilityDistribution() \T1/ptm/m/n/10 (\T1/ptm/m/ it/10 in Overfull \hbox (46.96086pt too wide) in paragraph at lines 142--144 \T1/ptm/m/it/10 mod-ule emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/ 10 ), Underfull \hbox (badness 10000) in paragraph at lines 144--146 []\T1/pcr/m/n/10 DelayedIntervention() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 146--148 []\T1/pcr/m/n/10 Demographics \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 146--148 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 148--150 []\T1/pcr/m/n/10 DemographicsGenerator \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Overfull \hbox (17.1711pt too wide) in paragraph at lines 148--150 \T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 150--152 []\T1/pcr/m/n/10 DemographicsOverlay \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 150--152 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 152--154 []\T1/pcr/m/n/10 DemographicsType \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Overfull \hbox (17.1711pt too wide) in paragraph at lines 152--154 \T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 154--156 []\T1/pcr/m/n/10 do_mapping_from_events() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule Overfull \hbox (4.2412pt too wide) in paragraph at lines 154--156 \T1/ptm/m/it/10 emod_api.config.dtk_pre_process_adhocevents\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 157--159 []\T1/pcr/m/n/10 dtk_to_schema() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (56.83089pt too wide) in paragraph at lines 159--161 []\T1/pcr/m/n/10 dtk_version() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channel reports.channels.ChannelReport Overfull \hbox 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in paragraph at lines 176--178 []\T1/pcr/m/n/10 DtkFileV3.NodesV3 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 178--180 []\T1/pcr/m/n/10 DtkFileV4 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 180--182 []\T1/pcr/m/n/10 DtkHeader \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 182--184 []\T1/pcr/m/n/10 duplicate_nodeID_check() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule Overfull \hbox (46.65079pt too wide) in paragraph at lines 182--184 \T1/ptm/m/it/10 emod_api.demographics.DemographicsInputDataParsers\T1/ptm/m/n/1 0 ), Underfull \hbox (badness 10000) in paragraph at lines 187--189 []\T1/pcr/m/n/10 EllZeeFour \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Overfull \hbox (64.1225pt too wide) in paragraph at lines 201--202 []\T1/pcr/m/n/10 emod_api.config.default_from_schema_no_validation Overfull \hbox (34.1225pt too wide) in paragraph at lines 203--204 []\T1/pcr/m/n/10 emod_api.config.dtk_post_process_adhocevents Overfull \hbox (28.1225pt too wide) in paragraph at lines 205--206 []\T1/pcr/m/n/10 emod_api.config.dtk_pre_process_adhocevents Overfull \hbox (10.1225pt too wide) in paragraph at lines 223--224 []\T1/pcr/m/n/10 emod_api.demographics.demographics_utils Overfull \hbox (28.1225pt too wide) in paragraph at lines 225--226 []\T1/pcr/m/n/10 emod_api.demographics.DemographicsGenerator Overfull \hbox (70.1225pt too wide) in paragraph at lines 227--228 []\T1/pcr/m/n/10 emod_api.demographics.DemographicsInputDataParsers Overfull \hbox (28.1225pt too wide) in paragraph at lines 229--230 []\T1/pcr/m/n/10 emod_api.demographics.DemographicsTemplates Overfull \hbox (4.1225pt too wide) in paragraph at lines 231--232 []\T1/pcr/m/n/10 emod_api.demographics.grid_construction Overfull \hbox (40.1225pt too wide) in paragraph at lines 235--236 []\T1/pcr/m/n/10 emod_api.demographics.PreDefinedDistributions Overfull \hbox (40.1225pt too wide) in paragraph at lines 237--238 []\T1/pcr/m/n/10 emod_api.demographics.PropertiesAndAttributes Overfull \hbox (4.1225pt too wide) in paragraph at lines 267--268 []\T1/pcr/m/n/10 emod_api.schema.dtk_post_process_schema [59] Overfull \hbox (28.1225pt too wide) in paragraph at lines 283--284 []\T1/pcr/m/n/10 emod_api.serialization.SerializedPopulation Overfull \hbox (15.62103pt too wide) in paragraph at lines 295--297 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 297--299 []\T1/pcr/m/n/10 examine_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 307--309 []\T1/pcr/m/n/10 fill_nodes_legacy() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (46.65079pt too wide) in paragraph at lines 307--309 \T1/ptm/m/it/10 emod_api.demographics.DemographicsInputDataParsers\T1/ptm/m/n/1 0 ), Overfull \hbox (4.62106pt too wide) in paragraph at lines 309--311 []\T1/pcr/m/n/10 finalize() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.schema_to_ class.ReadOnlyDict Overfull \hbox (36.30013pt too wide) in paragraph at lines 311--313 []\T1/pcr/m/n/10 find() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule emod_api.ser ialization.SerializedPopulation\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 313--315 []\T1/pcr/m/n/10 flattenConfig() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (81.59949pt too wide) in paragraph at lines 315--317 []\T1/pcr/m/n/10 flush() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serialization .SerializedPopulation.SerializedPopulation Underfull \hbox (badness 10000) in paragraph at lines 319--321 []\T1/pcr/m/n/10 from_csv() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 319--321 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 321--322 []\T1/pcr/m/n/10 from_csv() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 322--324 []\T1/pcr/m/n/10 from_data() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demograph ics.Node.Node Underfull \hbox (badness 10000) in paragraph at lines 324--326 []\T1/pcr/m/n/10 from_dataframe() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (17.1711pt too wide) in paragraph at lines 324--326 \T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/ptm/m/n/10 ), Overfull \hbox (16.1225pt too wide) in paragraph at lines 328--330 []\T1/pcr/m/n/10 from_demog_and_param_gravity_webservice() Overfull \hbox (122.1895pt too wide) in paragraph at lines 330--332 []\T1/pcr/m/n/10 from_dict() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demograph ics.PropertiesAndAttributes.IndividualAttributes Overfull \hbox (188.8387pt too wide) in paragraph at lines 332--334 []\T1/pcr/m/n/10 from_dict() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demograph 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Underfull \hbox (badness 10000) in paragraph at lines 350--352 []\T1/pcr/m/n/10 from_template_node() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 350--352 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 352--354 []\T1/pcr/m/n/10 FullRisk() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (15.62103pt too wide) in paragraph at lines 352--354 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Overfull \hbox (37.30118pt too wide) in paragraph at lines 357--359 []\T1/pcr/m/n/10 GenderDataType() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migr ation.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 359--361 []\T1/pcr/m/n/10 generate_demographics() Overfull \hbox (115.97037pt too wide) in paragraph at lines 359--361 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator.Dem ographicsGenerator Overfull \hbox (80.97084pt too wide) in paragraph at lines 361--363 []\T1/pcr/m/n/10 generate_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demog raphics.BaseInputFile.BaseInputFile Overfull \hbox (85.96114pt too wide) in paragraph at lines 363--365 []\T1/pcr/m/n/10 generate_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demog raphics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 365--367 []\T1/pcr/m/n/10 generate_headers() Overfull \hbox (29.07082pt too wide) in paragraph at lines 365--367 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.BaseInputFile.BaseInputFi le Underfull \hbox (badness 10000) in paragraph at lines 367--369 []\T1/pcr/m/n/10 generate_metadata() Overfull \hbox (115.97037pt too wide) in paragraph at lines 367--369 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator.Dem ographicsGenerator Overfull \hbox (173.87039pt too wide) in paragraph at lines 369--371 []\T1/pcr/m/n/10 generate_nodes() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demo graphics.DemographicsGenerator.DemographicsGenerator [60] Underfull \hbox (badness 10000) in paragraph at lines 372--374 []\T1/pcr/m/n/10 get_bbox() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 372--374 \T1/ptm/m/it/10 emod_api.demographics.grid_construction\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 374--376 []\T1/pcr/m/n/10 get_class_with_defaults() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in m od-ule Overfull \hbox (62.64088pt too wide) in paragraph at lines 376--378 \T1/ptm/m/it/10 mod-ule emod_api.config.default_from_schema_no_validation\T1/pt m/m/n/10 ), Overfull \hbox (45.42091pt too wide) in paragraph at lines 378--380 \T1/ptm/m/it/10 ule emod_api.config.default_from_schema_no_validation\T1/ptm/m/ n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 383--385 []\T1/pcr/m/n/10 get_fert_dist() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox 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paragraph at lines 391--393 []\T1/pcr/m/n/10 get_node() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographi cs.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 393--395 []\T1/pcr/m/n/10 get_node_ids_from_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 393--395 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 395--397 []\T1/pcr/m/n/10 get_node_offsets() Underfull \hbox (badness 10000) in paragraph at lines 395--397 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 397--399 []\T1/pcr/m/n/10 get_node_pops_from_params() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 399--401 []\T1/pcr/m/n/10 get_parameters() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 399--401 \T1/ptm/m/it/10 emod_api.serialization.SerializedPopulation\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 401--402 []\T1/pcr/m/n/10 get_recv_trigger() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 403--404 []\T1/pcr/m/n/10 get_send_trigger() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 404--405 []\T1/pcr/m/n/10 get_trigger_list() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 405--407 []\T1/pcr/m/n/10 get_waning_from_params() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 407--409 []\T1/pcr/m/n/10 get_xpix_ypix() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (26.83089pt too wide) in paragraph at lines 413--415 []\T1/pcr/m/n/10 header() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channelrepor ts.channels.ChannelReport Underfull \hbox (badness 10000) in paragraph at lines 424--426 []\T1/pcr/m/n/10 id() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.spatialreports.s patial.SpatialNode Underfull \hbox (badness 7308) in paragraph at lines 426--427 []\T1/pcr/m/n/10 id() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.weather.weather. 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Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 625--627 []\T1/pcr/m/n/10 Nodes() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.mig ration.Migration Underfull \hbox (badness 5802) in paragraph at lines 627--629 []\T1/pcr/m/n/10 nodes() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serialization .dtkFileTools.DtkFile Overfull \hbox (81.59949pt too wide) in paragraph at lines 629--631 []\T1/pcr/m/n/10 nodes() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serialization .SerializedPopulation.SerializedPopulation Overfull \hbox (2.8303pt too wide) in paragraph at lines 631--633 []\T1/pcr/m/n/10 nodes() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.spatialreport s.spatial.SpatialReport Underfull \hbox (badness 10000) in paragraph at lines 634--635 []\T1/pcr/m/n/10 nodes() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.weather.weath er.Weather prop- Underfull \hbox (badness 10000) in paragraph at lines 635--637 []\T1/pcr/m/n/10 nodes_for_DTK() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 637--639 []\T1/pcr/m/n/10 NoInitialPrevalence() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-u le Overfull \hbox (15.62103pt too wide) in paragraph at lines 637--639 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 639--641 []\T1/pcr/m/n/10 NoRisk() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (15.62103pt too wide) in paragraph at lines 639--641 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Overfull \hbox (8.94016pt too wide) in paragraph at lines 641--643 []\T1/pcr/m/n/10 NullPtr \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in emod_api.seri alization.dtkFileSupport\T1/ptm/m/n/10 ), Overfull \hbox (62.83089pt too wide) in paragraph at lines 643--645 []\T1/pcr/m/n/10 num_channels() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channe lreports.channels.ChannelReport Overfull \hbox (31.71117pt too wide) in paragraph at lines 645--647 []\T1/pcr/m/n/10 num_channels() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channe lreports.channels.Header Overfull \hbox (74.83089pt too wide) in paragraph at lines 647--649 []\T1/pcr/m/n/10 num_time_steps() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.chan nelreports.channels.ChannelReport Overfull \hbox (43.71117pt too wide) in paragraph at lines 649--651 []\T1/pcr/m/n/10 num_time_steps() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.chan nelreports.channels.Header Underfull \hbox (badness 10000) in paragraph at lines 654--656 []\T1/pcr/m/n/10 ONE_FOR_EACH_GENDER Underfull \hbox (badness 10000) in paragraph at lines 654--656 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 656--657 []\T1/pcr/m/n/10 OverlayNode \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 660--662 []\T1/pcr/m/n/10 PIECEWISE_CONSTANT Underfull \hbox (badness 10000) in paragraph at lines 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(badness 10000) in paragraph at lines 678--680 []\T1/pcr/m/n/10 REGIONAL \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.mi gration.Migration Overfull \hbox (56.83089pt too wide) in paragraph at lines 680--682 []\T1/pcr/m/n/10 report_type() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channel reports.channels.ChannelReport Overfull \hbox (25.71117pt too wide) in paragraph at lines 682--684 []\T1/pcr/m/n/10 report_type() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channel reports.channels.Header Overfull \hbox (74.83089pt too wide) in paragraph at lines 684--686 []\T1/pcr/m/n/10 report_version() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.chan nelreports.channels.ChannelReport Overfull \hbox (43.71117pt too wide) in paragraph at lines 686--688 []\T1/pcr/m/n/10 report_version() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.chan nelreports.channels.Header Overfull \hbox (4.77174pt too wide) in paragraph at lines 688--690 []\T1/pcr/m/n/10 res_in_degrees \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demogr aphics.Node.Node Underfull \hbox (badness 10000) in paragraph at lines 695--697 []\T1/pcr/m/n/10 SAME_FOR_BOTH_GENDERS Underfull \hbox (badness 10000) in paragraph at lines 695--697 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 698--700 []\T1/pcr/m/n/10 ScheduledCampaignEvent() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 700--702 []\T1/pcr/m/n/10 schema_to_config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 700--702 \T1/ptm/m/it/10 emod_api.config.from_poi_and_binary\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 702--704 []\T1/pcr/m/n/10 schema_to_config_subnode() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (31.30106pt too wide) in paragraph at lines 702--704 \T1/ptm/m/it/10 emod_api.config.default_from_schema_no_validation\T1/ptm/m/n/10 ), Underfull \hbox 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\hbox (badness 10000) in paragraph at lines 715--717 []\T1/pcr/m/n/10 set_demog_distributions() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in m od-ule Underfull \hbox (badness 10000) in paragraph at lines 715--717 \T1/ptm/m/it/10 emod_api.demographics.demographics_utils\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 717--719 []\T1/pcr/m/n/10 set_growing_demographics() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 717--719 \T1/ptm/m/it/10 emod_api.demographics.demographics_utils\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 719--721 []\T1/pcr/m/n/10 set_immune_mod() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 719--721 \T1/ptm/m/it/10 emod_api.demographics.demographics_utils\T1/ptm/m/n/10 ), Overfull \hbox (173.87039pt too wide) in paragraph at lines 721--723 []\T1/pcr/m/n/10 set_resolution() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demo graphics.DemographicsGenerator.DemographicsGenerator Underfull \hbox (badness 10000) in paragraph at lines 723--725 []\T1/pcr/m/n/10 set_risk_mod() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 723--725 \T1/ptm/m/it/10 emod_api.demographics.demographics_utils\T1/ptm/m/n/10 ), Overfull \hbox (16.62106pt too wide) in paragraph at lines 725--727 []\T1/pcr/m/n/10 set_schema() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.schema_t o_class.ReadOnlyDict Underfull \hbox (badness 10000) in paragraph at lines 728--730 []\T1/pcr/m/n/10 set_schema() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 728--730 \T1/ptm/m/it/10 emod_api.config.from_poi_and_binary\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 730--732 []\T1/pcr/m/n/10 set_static_demographics() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in m od-ule Underfull \hbox (badness 10000) in paragraph at lines 730--732 \T1/ptm/m/it/10 emod_api.demographics.demographics_utils\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 732--734 []\T1/pcr/m/n/10 SetAgeDistribution() Overfull \hbox (34.06111pt too wide) in paragraph at lines 732--734 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Overfull \hbox (79.96114pt too wide) in paragraph at lines 734--736 []\T1/pcr/m/n/10 SetBirthRate() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demogr aphics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 736--738 []\T1/pcr/m/n/10 SetConstantRisk() Overfull \hbox (34.06111pt too wide) in paragraph at lines 736--738 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 738--740 []\T1/pcr/m/n/10 SetConstantSusceptibility() Overfull \hbox (34.06111pt too wide) in paragraph at lines 738--740 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull 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emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 748--750 []\T1/pcr/m/n/10 SetDefaultProperties() Overfull \hbox (34.06111pt too wide) in paragraph at lines 748--750 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 750--752 []\T1/pcr/m/n/10 SetDefaultPropertiesFertMort() Overfull \hbox (34.06111pt too wide) in paragraph at lines 750--752 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Overfull \hbox (34.1225pt too wide) in paragraph at lines 752--754 []\T1/pcr/m/n/10 SetEquilibriumAgeDistFromBirthAndMortRates() Overfull \hbox (34.06111pt too wide) in paragraph at lines 752--754 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 754--756 []\T1/pcr/m/n/10 SetHeteroRiskExponDist() Overfull \hbox (34.06111pt too wide) in paragraph at lines 754--756 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 756--758 []\T1/pcr/m/n/10 SetHeteroRiskLognormalDist() Overfull \hbox (34.06111pt too wide) in paragraph at lines 756--758 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 758--760 []\T1/pcr/m/n/10 SetHeteroRiskUniformDist() Overfull \hbox (34.06111pt too wide) in paragraph at lines 758--760 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 760--762 []\T1/pcr/m/n/10 SetIndividualAttributesWithFertMort() Overfull \hbox (34.06111pt too wide) in paragraph at lines 760--762 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 762--764 []\T1/pcr/m/n/10 SetInitialAgeExponential() Overfull \hbox (34.06111pt too wide) in paragraph at lines 762--764 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 764--766 []\T1/pcr/m/n/10 SetInitialAgeLikeSubSaharanAfrica() Overfull \hbox (34.06111pt too wide) in paragraph at lines 764--766 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 766--768 []\T1/pcr/m/n/10 SetInitPrevFromUniformDraw() Overfull \hbox (34.06111pt too wide) in paragraph at lines 766--768 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 768--770 []\T1/pcr/m/n/10 SetMinimalNodeAttributes() Overfull \hbox (34.06111pt too wide) in paragraph at lines 768--770 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 770--772 []\T1/pcr/m/n/10 SetMortalityDistribution() Overfull \hbox (34.06111pt too wide) in paragraph at lines 770--772 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 772--774 []\T1/pcr/m/n/10 SetMortalityRate() Overfull \hbox (34.06111pt too wide) in paragraph at lines 772--774 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 774--776 []\T1/pcr/m/n/10 SetNodeDefaultFromTemplate() Overfull \hbox (34.06111pt too wide) in paragraph at lines 774--776 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 776--778 []\T1/pcr/m/n/10 SetOverdispersion() Overfull \hbox (34.06111pt too wide) in paragraph at lines 776--778 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 778--780 []\T1/pcr/m/n/10 SimpleSusceptibilityDistribution() \T1/ptm/m/n/10 (\T1/ptm/m/i t/10 in Overfull \hbox (46.96086pt too wide) in paragraph at lines 778--780 \T1/ptm/m/it/10 mod-ule emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/ 10 ), Overfull \hbox (34.70026pt too wide) in paragraph at lines 780--782 []\T1/pcr/m/n/10 simulation() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializ ation.dtkFileTools.DtkFileV1 Overfull \hbox (34.70026pt too wide) in paragraph at lines 782--784 []\T1/pcr/m/n/10 simulation() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializ ation.dtkFileTools.DtkFileV2 Overfull \hbox (34.70026pt too wide) in paragraph at lines 784--786 []\T1/pcr/m/n/10 simulation() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializ ation.dtkFileTools.DtkFileV3 Overfull \hbox (2.94016pt too wide) in paragraph at lines 786--787 []\T1/pcr/m/n/10 Snappy \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in emod_api.seria lization.dtkFileSupport\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 787--788 []\T1/pcr/m/n/10 SpatialNode \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 788--790 []\T1/pcr/m/n/10 SpatialReport \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 790--792 []\T1/pcr/m/n/10 StandardDiagnostic() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ul e [65] Overfull \hbox (2.8303pt too wide) in paragraph at lines 792--794 []\T1/pcr/m/n/10 start() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.spatialreport s.spatial.SpatialReport Overfull \hbox (50.83089pt too wide) in paragraph at lines 794--796 []\T1/pcr/m/n/10 start_time() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channelr eports.channels.ChannelReport Overfull \hbox (19.71117pt too wide) in paragraph at lines 796--798 []\T1/pcr/m/n/10 start_time() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channelr eports.channels.Header Overfull \hbox (91.05998pt too wide) in paragraph at lines 798--800 []\T1/pcr/m/n/10 STATIC 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