Read the Docs build information
Build id: 840954
Project: institute-for-disease-modeling-emodpy-hiv
Version: latest
Commit: a009e1685634e07b4b4b3a41471a404606636c86
Date: 2022-02-02T00:07:26.462076Z
State: finished
Success: False


[rtd-command-info] start-time: 2022-02-02T00:07:28.343690Z, end-time: 2022-02-02T00:07:29.910112Z, duration: 1, exit-code: 0
git clone --no-single-branch --depth 50 git@github.com:InstituteforDiseaseModeling/emodpy-hiv.git .
Cloning into '.'...
Warning: Permanently added 'github.com,192.30.255.112' (ECDSA) to the list of known hosts.

[rtd-command-info] start-time: 2022-02-02T00:07:30.118697Z, end-time: 2022-02-02T00:07:30.223670Z, duration: 0, exit-code: 0
git checkout --force origin/master
Note: checking out 'origin/master'.

You are in 'detached HEAD' state. You can look around, make experimental
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state without impacting any branches by performing another checkout.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -b with the checkout command again. Example:

  git checkout -b <new-branch-name>

HEAD is now at a009e16 Beef up faq for campaigns (#132)

[rtd-command-info] start-time: 2022-02-02T00:07:30.388952Z, end-time: 2022-02-02T00:07:30.451958Z, duration: 0, exit-code: 0
git clean -d -f -f


[rtd-command-info] start-time: 2022-02-02T00:07:31.673531Z, end-time: 2022-02-02T00:07:37.111583Z, duration: 5, exit-code: 0
python3.7 -mvirtualenv 
Using base prefix '/home/docs/.pyenv/versions/3.7.9'
New python executable in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/bin/python3.7
Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/bin/python
Installing setuptools, pip, wheel...
done.

[rtd-command-info] start-time: 2022-02-02T00:07:37.344696Z, end-time: 2022-02-02T00:07:41.319293Z, duration: 3, exit-code: 0
python -m pip install --upgrade --no-cache-dir pip<=21.3.1 setuptools<58.3.0
Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/api/pypi/pypi-production/simple
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Collecting pip<=21.3.1
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Collecting setuptools<58.3.0
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Installing collected packages: setuptools, pip
  Attempting uninstall: setuptools
    Found existing installation: setuptools 60.6.0
    Uninstalling setuptools-60.6.0:
      Successfully uninstalled setuptools-60.6.0
  Attempting uninstall: pip
    Found existing installation: pip 22.0.2
    Uninstalling pip-22.0.2:
      Successfully uninstalled pip-22.0.2
Successfully installed pip-21.3.1 setuptools-58.2.0
DEPRECATION: The HTML index page being used (https://packages.idmod.org/api/pypi/pypi-production/simple/pip/) is not a proper HTML 5 document. This is in violation of PEP 503 which requires these pages to be well-formed HTML 5 documents. Please reach out to the owners of this index page, and ask them to update this index page to a valid HTML 5 document. pip 22.2 will enforce this behaviour change. Discussion can be found at https://github.com/pypa/pip/issues/10825

[rtd-command-info] start-time: 2022-02-02T00:07:41.504783Z, end-time: 2022-02-02T00:07:56.239427Z, duration: 14, exit-code: 0
python -m pip install --upgrade --no-cache-dir mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx sphinx-rtd-theme readthedocs-sphinx-ext<2.2
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Building wheels for collected packages: mock, future
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  Building wheel for future (setup.py): started
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  Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491070 sha256=4637953ea854b9e472419f1395d89cb6f46af5fad700f275d6b19fd42f0ed004
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Successfully built mock future
Installing collected packages: zipp, urllib3, typing-extensions, pytz, pyparsing, MarkupSafe, idna, charset-normalizer, certifi, sphinxcontrib-serializinghtml, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, snowballstemmer, requests, Pygments, packaging, Jinja2, importlib-metadata, imagesize, future, docutils, babel, alabaster, sphinx, commonmark, sphinx-rtd-theme, recommonmark, readthedocs-sphinx-ext, pillow, mock
Successfully installed Jinja2-3.0.3 MarkupSafe-2.0.1 Pygments-2.11.2 alabaster-0.7.12 babel-2.9.1 certifi-2021.10.8 charset-normalizer-2.0.11 commonmark-0.8.1 docutils-0.17.1 future-0.18.2 idna-3.3 imagesize-1.3.0 importlib-metadata-4.10.1 mock-1.0.1 packaging-21.3 pillow-5.4.1 pyparsing-3.0.7 pytz-2021.3 readthedocs-sphinx-ext-2.1.4 recommonmark-0.5.0 requests-2.27.1 snowballstemmer-2.2.0 sphinx-4.4.0 sphinx-rtd-theme-1.0.0 sphinxcontrib-applehelp-1.0.2 sphinxcontrib-devhelp-1.0.2 sphinxcontrib-htmlhelp-2.0.0 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-qthelp-1.0.3 sphinxcontrib-serializinghtml-1.1.5 typing-extensions-4.0.1 urllib3-1.26.8 zipp-3.7.0
WARNING: You are using pip version 21.3.1; however, version 22.0.2 is available.
You should consider upgrading via the '/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/bin/python -m pip install --upgrade pip' command.

[rtd-command-info] start-time: 2022-02-02T00:07:56.403740Z, end-time: 2022-02-02T00:08:35.103818Z, duration: 38, exit-code: 0
python -m pip install --exists-action=w --no-cache-dir -r requirements.txt
Looking in indexes: https://packages.idmod.org/api/pypi/pypi-production/simple
Collecting emodpy~=1.15
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Collecting emod-hiv==0.0.4
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Installing collected packages: six, pycparser, numpy, yarg, toml, threadpoolctl, scipy, python-dateutil, py, pluggy, packaging, joblib, iniconfig, humanfriendly, docopt, cffi, cached-property, attrs, xdg, tqdm, tabulate, soupsieve, scikit-learn, pyyaml, pytest, pygit2, pipreqs, pandas, more-itertools, jeepney, diskcache, cryptography, coloredlogs, backoff, sklearn, shapely, SecretStorage, pytest-lazy-fixture, pyproj, pyCOMPS, prodict, pillow, lz4, kiwisolver, idmtools, geographiclib, fonttools, cycler, beautifulsoup4, matplotlib, keyring, idmtools-platform-comps, idmtools-models, emod-api, click, bs4, astunparse, astor, emodpy, emod-hiv
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Successfully installed SecretStorage-3.3.1 astor-0.8.1 astunparse-1.6.3 attrs-21.4.0 backoff-1.10.0 beautifulsoup4-4.10.0 bs4-0.0.1 cached-property-1.5.2 cffi-1.15.0 click-7.1.2 coloredlogs-15.0.1 cryptography-36.0.1 cycler-0.11.0 diskcache-5.2.1 docopt-0.6.2 emod-api-1.20.2 emod-hiv-0.0.4 emodpy-1.17.1 fonttools-4.29.1 geographiclib-1.52 humanfriendly-10.0 idmtools-1.6.4 idmtools-models-1.6.4 idmtools-platform-comps-1.6.4 iniconfig-1.1.1 jeepney-0.7.1 joblib-1.1.0 keyring-23.5.0 kiwisolver-1.3.2 lz4-3.1.10 matplotlib-3.5.1 more-itertools-8.8.0 numpy-1.21.5 packaging-20.9 pandas-1.1.5 pillow-9.0.0 pipreqs-0.4.11 pluggy-0.13.1 prodict-0.8.18 py-1.11.0 pyCOMPS-2.5.0 pycparser-2.21 pygit2-1.5.0 pyproj-3.2.1 pytest-6.2.5 pytest-lazy-fixture-0.6.3 python-dateutil-2.8.2 pyyaml-5.4.1 scikit-learn-1.0.2 scipy-1.7.3 shapely-1.8.0 six-1.16.0 sklearn-0.0 soupsieve-2.3.1 tabulate-0.8.9 threadpoolctl-3.1.0 toml-0.10.2 tqdm-4.62.3 xdg-5.1.1 yarg-0.1.9
WARNING: You are using pip version 21.3.1; however, version 22.0.2 is available.
You should consider upgrading via the '/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/bin/python -m pip install --upgrade pip' command.

[rtd-command-info] start-time: 2022-02-02T00:08:35.281178Z, end-time: 2022-02-02T00:08:43.842857Z, duration: 8, exit-code: 0
python -m pip install --exists-action=w --no-cache-dir -r docs/requirements.txt
Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/api/pypi/pypi-production/simple
Collecting sphinx-rtd-theme~=0.5.0
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Collecting pockets>=0.3
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Requirement already satisfied: packaging in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages (from sphinx~=3.2.1->-r docs/requirements.txt (line 3)) (20.9)
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Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages (from sphinx~=3.2.1->-r docs/requirements.txt (line 3)) (58.2.0)
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Collecting deprecated
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Collecting pynacl>=1.4.0
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Collecting pyjwt>=2.0
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Collecting wrapt<2,>=1.10
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Installing collected packages: wrapt, docutils, sphinx, pynacl, pyjwt, pockets, deprecated, sphinxext.remoteliteralinclude, sphinxcontrib-programoutput, sphinxcontrib-napoleon, sphinx-rtd-theme, sphinx-copybutton, PyGithub, pygit2, py-make, plantweb
  Attempting uninstall: docutils
    Found existing installation: docutils 0.17.1
    Uninstalling docutils-0.17.1:
      Successfully uninstalled docutils-0.17.1
  Attempting uninstall: sphinx
    Found existing installation: Sphinx 4.4.0
    Uninstalling Sphinx-4.4.0:
      Successfully uninstalled Sphinx-4.4.0
  Attempting uninstall: sphinx-rtd-theme
    Found existing installation: sphinx-rtd-theme 1.0.0
    Uninstalling sphinx-rtd-theme-1.0.0:
      Successfully uninstalled sphinx-rtd-theme-1.0.0
  Attempting uninstall: pygit2
    Found existing installation: pygit2 1.5.0
    Uninstalling pygit2-1.5.0:
      Successfully uninstalled pygit2-1.5.0
ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts.
idmtools 1.6.4 requires pygit2<1.6.0,>=1.4.0, but you have pygit2 1.2.1 which is incompatible.
Successfully installed PyGithub-1.55 deprecated-1.2.13 docutils-0.16 plantweb-1.2.1 pockets-0.9.1 py-make-0.1.1 pygit2-1.2.1 pyjwt-2.3.0 pynacl-1.5.0 sphinx-3.2.1 sphinx-copybutton-0.4.0 sphinx-rtd-theme-0.5.2 sphinxcontrib-napoleon-0.7 sphinxcontrib-programoutput-0.17 sphinxext.remoteliteralinclude-0.3.0 wrapt-1.13.3
WARNING: You are using pip version 21.3.1; however, version 22.0.2 is available.
You should consider upgrading via the '/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/bin/python -m pip install --upgrade pip' command.

[rtd-command-info] start-time: 2022-02-02T00:08:44.012694Z, end-time: 2022-02-02T00:08:45.553351Z, duration: 1, exit-code: 0
python ./setup.py install --force
running install
running bdist_egg
running egg_info
creating emodpy_hiv.egg-info
writing emodpy_hiv.egg-info/PKG-INFO
writing dependency_links to emodpy_hiv.egg-info/dependency_links.txt
writing requirements to emodpy_hiv.egg-info/requires.txt
writing top-level names to emodpy_hiv.egg-info/top_level.txt
writing manifest file 'emodpy_hiv.egg-info/SOURCES.txt'
reading manifest file 'emodpy_hiv.egg-info/SOURCES.txt'
adding license file 'LICENSE'
writing manifest file 'emodpy_hiv.egg-info/SOURCES.txt'
installing library code to build/bdist.linux-x86_64/egg
running install_lib
running build_py
creating build
creating build/lib
creating build/lib/emodpy_hiv
copying emodpy_hiv/download.py -> build/lib/emodpy_hiv
copying emodpy_hiv/utils.py -> build/lib/emodpy_hiv
copying emodpy_hiv/camp_creator.py -> build/lib/emodpy_hiv
copying emodpy_hiv/__init__.py -> build/lib/emodpy_hiv
creating build/lib/tests
copying tests/__init__.py -> build/lib/tests
creating build/lib/emodpy_hiv/interventions
copying emodpy_hiv/interventions/malecirc.py -> build/lib/emodpy_hiv/interventions
copying emodpy_hiv/interventions/random.py -> build/lib/emodpy_hiv/interventions
copying emodpy_hiv/interventions/yearandsexdiag.py -> build/lib/emodpy_hiv/interventions
copying emodpy_hiv/interventions/modcoinf.py -> build/lib/emodpy_hiv/interventions
copying emodpy_hiv/interventions/stipostdebut.py -> build/lib/emodpy_hiv/interventions
copying emodpy_hiv/interventions/drawblood.py -> build/lib/emodpy_hiv/interventions
copying emodpy_hiv/interventions/reftracker.py -> build/lib/emodpy_hiv/interventions
copying emodpy_hiv/interventions/cascade_helpers.py -> build/lib/emodpy_hiv/interventions
copying emodpy_hiv/interventions/prep.py -> build/lib/emodpy_hiv/interventions
copying emodpy_hiv/interventions/utils.py -> build/lib/emodpy_hiv/interventions
copying emodpy_hiv/interventions/art.py -> build/lib/emodpy_hiv/interventions
copying emodpy_hiv/interventions/peek_camp.py -> build/lib/emodpy_hiv/interventions
copying emodpy_hiv/interventions/artdropout.py -> build/lib/emodpy_hiv/interventions
copying emodpy_hiv/interventions/sigmoiddiag.py -> build/lib/emodpy_hiv/interventions
copying emodpy_hiv/interventions/outbreak.py -> build/lib/emodpy_hiv/interventions
copying emodpy_hiv/interventions/artstagingbycd4agnosticdiag.py -> build/lib/emodpy_hiv/interventions
copying emodpy_hiv/interventions/delay.py -> build/lib/emodpy_hiv/interventions
copying emodpy_hiv/interventions/artstagingbycd4diag.py -> build/lib/emodpy_hiv/interventions
copying emodpy_hiv/interventions/__init__.py -> build/lib/emodpy_hiv/interventions
copying emodpy_hiv/interventions/rapiddiag.py -> build/lib/emodpy_hiv/interventions
copying emodpy_hiv/interventions/pmtct.py -> build/lib/emodpy_hiv/interventions
creating build/lib/emodpy_hiv/demographics
copying emodpy_hiv/demographics/HIVDemographics.py -> build/lib/emodpy_hiv/demographics
copying emodpy_hiv/demographics/DemographicsTemplates.py -> build/lib/emodpy_hiv/demographics
copying emodpy_hiv/demographics/__init__.py -> build/lib/emodpy_hiv/demographics
creating build/lib/tests/unittests
copying tests/unittests/test_intervention.py -> build/lib/tests/unittests
copying tests/unittests/test_demographics.py -> build/lib/tests/unittests
copying tests/unittests/check_coverage.py -> build/lib/tests/unittests
copying tests/unittests/schema_path_file.py -> build/lib/tests/unittests
copying tests/unittests/test_import.py -> build/lib/tests/unittests
copying tests/unittests/__init__.py -> build/lib/tests/unittests
creating build/bdist.linux-x86_64
creating build/bdist.linux-x86_64/egg
creating build/bdist.linux-x86_64/egg/emodpy_hiv
copying build/lib/emodpy_hiv/download.py -> build/bdist.linux-x86_64/egg/emodpy_hiv
copying build/lib/emodpy_hiv/utils.py -> build/bdist.linux-x86_64/egg/emodpy_hiv
creating build/bdist.linux-x86_64/egg/emodpy_hiv/interventions
copying build/lib/emodpy_hiv/interventions/malecirc.py -> build/bdist.linux-x86_64/egg/emodpy_hiv/interventions
copying build/lib/emodpy_hiv/interventions/random.py -> build/bdist.linux-x86_64/egg/emodpy_hiv/interventions
copying build/lib/emodpy_hiv/interventions/yearandsexdiag.py -> build/bdist.linux-x86_64/egg/emodpy_hiv/interventions
copying build/lib/emodpy_hiv/interventions/modcoinf.py -> build/bdist.linux-x86_64/egg/emodpy_hiv/interventions
copying build/lib/emodpy_hiv/interventions/stipostdebut.py -> build/bdist.linux-x86_64/egg/emodpy_hiv/interventions
copying build/lib/emodpy_hiv/interventions/drawblood.py -> build/bdist.linux-x86_64/egg/emodpy_hiv/interventions
copying build/lib/emodpy_hiv/interventions/reftracker.py -> build/bdist.linux-x86_64/egg/emodpy_hiv/interventions
copying build/lib/emodpy_hiv/interventions/cascade_helpers.py -> build/bdist.linux-x86_64/egg/emodpy_hiv/interventions
copying build/lib/emodpy_hiv/interventions/prep.py -> build/bdist.linux-x86_64/egg/emodpy_hiv/interventions
copying build/lib/emodpy_hiv/interventions/utils.py -> build/bdist.linux-x86_64/egg/emodpy_hiv/interventions
copying build/lib/emodpy_hiv/interventions/art.py -> build/bdist.linux-x86_64/egg/emodpy_hiv/interventions
copying build/lib/emodpy_hiv/interventions/peek_camp.py -> build/bdist.linux-x86_64/egg/emodpy_hiv/interventions
copying build/lib/emodpy_hiv/interventions/artdropout.py -> build/bdist.linux-x86_64/egg/emodpy_hiv/interventions
copying build/lib/emodpy_hiv/interventions/sigmoiddiag.py -> build/bdist.linux-x86_64/egg/emodpy_hiv/interventions
copying build/lib/emodpy_hiv/interventions/outbreak.py -> build/bdist.linux-x86_64/egg/emodpy_hiv/interventions
copying build/lib/emodpy_hiv/interventions/artstagingbycd4agnosticdiag.py -> build/bdist.linux-x86_64/egg/emodpy_hiv/interventions
copying build/lib/emodpy_hiv/interventions/delay.py -> build/bdist.linux-x86_64/egg/emodpy_hiv/interventions
copying build/lib/emodpy_hiv/interventions/artstagingbycd4diag.py -> build/bdist.linux-x86_64/egg/emodpy_hiv/interventions
copying build/lib/emodpy_hiv/interventions/__init__.py -> build/bdist.linux-x86_64/egg/emodpy_hiv/interventions
copying build/lib/emodpy_hiv/interventions/rapiddiag.py -> build/bdist.linux-x86_64/egg/emodpy_hiv/interventions
copying build/lib/emodpy_hiv/interventions/pmtct.py -> build/bdist.linux-x86_64/egg/emodpy_hiv/interventions
creating build/bdist.linux-x86_64/egg/emodpy_hiv/demographics
copying build/lib/emodpy_hiv/demographics/HIVDemographics.py -> build/bdist.linux-x86_64/egg/emodpy_hiv/demographics
copying build/lib/emodpy_hiv/demographics/DemographicsTemplates.py -> build/bdist.linux-x86_64/egg/emodpy_hiv/demographics
copying build/lib/emodpy_hiv/demographics/__init__.py -> build/bdist.linux-x86_64/egg/emodpy_hiv/demographics
copying build/lib/emodpy_hiv/camp_creator.py -> build/bdist.linux-x86_64/egg/emodpy_hiv
copying build/lib/emodpy_hiv/__init__.py -> build/bdist.linux-x86_64/egg/emodpy_hiv
creating build/bdist.linux-x86_64/egg/tests
creating build/bdist.linux-x86_64/egg/tests/unittests
copying build/lib/tests/unittests/test_intervention.py -> build/bdist.linux-x86_64/egg/tests/unittests
copying build/lib/tests/unittests/test_demographics.py -> build/bdist.linux-x86_64/egg/tests/unittests
copying build/lib/tests/unittests/check_coverage.py -> build/bdist.linux-x86_64/egg/tests/unittests
copying build/lib/tests/unittests/schema_path_file.py -> build/bdist.linux-x86_64/egg/tests/unittests
copying build/lib/tests/unittests/test_import.py -> build/bdist.linux-x86_64/egg/tests/unittests
copying build/lib/tests/unittests/__init__.py -> build/bdist.linux-x86_64/egg/tests/unittests
copying build/lib/tests/__init__.py -> build/bdist.linux-x86_64/egg/tests
byte-compiling build/bdist.linux-x86_64/egg/emodpy_hiv/download.py to download.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emodpy_hiv/utils.py to utils.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emodpy_hiv/interventions/malecirc.py to malecirc.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emodpy_hiv/interventions/random.py to random.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emodpy_hiv/interventions/yearandsexdiag.py to yearandsexdiag.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emodpy_hiv/interventions/modcoinf.py to modcoinf.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emodpy_hiv/interventions/stipostdebut.py to stipostdebut.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emodpy_hiv/interventions/drawblood.py to drawblood.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emodpy_hiv/interventions/reftracker.py to reftracker.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emodpy_hiv/interventions/cascade_helpers.py to cascade_helpers.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emodpy_hiv/interventions/prep.py to prep.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emodpy_hiv/interventions/utils.py to utils.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emodpy_hiv/interventions/art.py to art.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emodpy_hiv/interventions/peek_camp.py to peek_camp.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emodpy_hiv/interventions/artdropout.py to artdropout.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emodpy_hiv/interventions/sigmoiddiag.py to sigmoiddiag.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emodpy_hiv/interventions/outbreak.py to outbreak.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emodpy_hiv/interventions/artstagingbycd4agnosticdiag.py to artstagingbycd4agnosticdiag.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emodpy_hiv/interventions/delay.py to delay.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emodpy_hiv/interventions/artstagingbycd4diag.py to artstagingbycd4diag.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emodpy_hiv/interventions/__init__.py to __init__.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emodpy_hiv/interventions/rapiddiag.py to rapiddiag.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emodpy_hiv/interventions/pmtct.py to pmtct.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emodpy_hiv/demographics/HIVDemographics.py to HIVDemographics.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emodpy_hiv/demographics/DemographicsTemplates.py to DemographicsTemplates.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emodpy_hiv/demographics/__init__.py to __init__.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emodpy_hiv/camp_creator.py to camp_creator.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emodpy_hiv/__init__.py to __init__.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_intervention.py to test_intervention.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_demographics.py to test_demographics.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/check_coverage.py to check_coverage.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/schema_path_file.py to schema_path_file.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_import.py to test_import.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/__init__.py to __init__.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/tests/__init__.py to __init__.cpython-37.pyc
creating build/bdist.linux-x86_64/egg/EGG-INFO
copying emodpy_hiv.egg-info/PKG-INFO -> build/bdist.linux-x86_64/egg/EGG-INFO
copying emodpy_hiv.egg-info/SOURCES.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
copying emodpy_hiv.egg-info/dependency_links.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
copying emodpy_hiv.egg-info/requires.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
copying emodpy_hiv.egg-info/top_level.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
zip_safe flag not set; analyzing archive contents...
tests.unittests.__pycache__.schema_path_file.cpython-37: module references __file__
tests.unittests.__pycache__.test_demographics.cpython-37: module references __file__
tests.unittests.__pycache__.test_intervention.cpython-37: module references __file__
creating dist
creating 'dist/emodpy_hiv-1.0.2-py3.7.egg' and adding 'build/bdist.linux-x86_64/egg' to it
removing 'build/bdist.linux-x86_64/egg' (and everything under it)
Processing emodpy_hiv-1.0.2-py3.7.egg
creating /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages/emodpy_hiv-1.0.2-py3.7.egg
Extracting emodpy_hiv-1.0.2-py3.7.egg to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages
Adding emodpy-hiv 1.0.2 to easy-install.pth file

Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages/emodpy_hiv-1.0.2-py3.7.egg
Processing dependencies for emodpy-hiv==1.0.2
Searching for pygit2<1.6.0,>=1.4.0
Reading https://pypi.org/simple/pygit2/
Downloading https://files.pythonhosted.org/packages/98/ed/41a09ca93374015958a18e37280d02c833238272ce3f2e28b10c6253477d/pygit2-1.5.0-cp37-cp37m-manylinux2014_x86_64.whl#sha256=fda3f8dd30608475f24a531e6f968010662ed7b9d4e303525d945c8933d9528f
Best match: pygit2 1.5.0
Processing pygit2-1.5.0-cp37-cp37m-manylinux2014_x86_64.whl
Installing pygit2-1.5.0-cp37-cp37m-manylinux2014_x86_64.whl to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages
Adding pygit2 1.5.0 to easy-install.pth file

Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages/pygit2-1.5.0-py3.7-linux-x86_64.egg
Searching for numpy==1.21.5
Best match: numpy 1.21.5
Adding numpy 1.21.5 to easy-install.pth file
Installing f2py script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/bin
Installing f2py3 script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/bin
Installing f2py3.7 script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/bin

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages
Searching for emod-hiv==0.0.4
Best match: emod-hiv 0.0.4
Adding emod-hiv 0.0.4 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages
Searching for emodpy==1.17.1
Best match: emodpy 1.17.1
Adding emodpy 1.17.1 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages
Searching for matplotlib==3.5.1
Best match: matplotlib 3.5.1
Adding matplotlib 3.5.1 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages
Searching for idmtools==1.6.4
Best match: idmtools 1.6.4
Adding idmtools 1.6.4 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages
Searching for astunparse==1.6.3
Best match: astunparse 1.6.3
Adding astunparse 1.6.3 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages
Searching for idmtools-models==1.6.4
Best match: idmtools-models 1.6.4
Adding idmtools-models 1.6.4 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages
Searching for astor==0.8.1
Best match: astor 0.8.1
Adding astor 0.8.1 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages
Searching for bs4==0.0.1
Best match: bs4 0.0.1
Adding bs4 0.0.1 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages
Searching for idmtools-platform-comps==1.6.4
Best match: idmtools-platform-comps 1.6.4
Adding idmtools-platform-comps 1.6.4 to easy-install.pth file
Installing comps-cli script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/bin

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages
Searching for click==7.1.2
Best match: click 7.1.2
Adding click 7.1.2 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages
Searching for keyring==23.5.0
Best match: keyring 23.5.0
Adding keyring 23.5.0 to easy-install.pth file
Installing keyring script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/bin

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages
Searching for emod-api==1.20.2
Best match: emod-api 1.20.2
Adding emod-api 1.20.2 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages
Searching for python-dateutil==2.8.2
Best match: python-dateutil 2.8.2
Adding python-dateutil 2.8.2 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages
Searching for packaging==20.9
Best match: packaging 20.9
Adding packaging 20.9 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages
Searching for Pillow==9.0.0
Best match: Pillow 9.0.0
Adding Pillow 9.0.0 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages
Searching for fonttools==4.29.1
Best match: fonttools 4.29.1
Adding fonttools 4.29.1 to easy-install.pth file
Installing fonttools script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/bin
Installing pyftmerge script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/bin
Installing pyftsubset script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/bin
Installing ttx script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/bin

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages
Searching for kiwisolver==1.3.2
Best match: kiwisolver 1.3.2
Adding kiwisolver 1.3.2 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages
Searching for pyparsing==3.0.7
Best match: pyparsing 3.0.7
Adding pyparsing 3.0.7 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages
Searching for cycler==0.11.0
Best match: cycler 0.11.0
Adding cycler 0.11.0 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages
Searching for more-itertools==8.8.0
Best match: more-itertools 8.8.0
Adding more-itertools 8.8.0 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages
Searching for coloredlogs==15.0.1
Best match: coloredlogs 15.0.1
Adding coloredlogs 15.0.1 to easy-install.pth file
Installing coloredlogs script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/bin

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages
Searching for tabulate==0.8.9
Best match: tabulate 0.8.9
Adding tabulate 0.8.9 to easy-install.pth file
Installing tabulate script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/bin

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages
Searching for pandas==1.1.5
Best match: pandas 1.1.5
Adding pandas 1.1.5 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages
Searching for pluggy==0.13.1
Best match: pluggy 0.13.1
Adding pluggy 0.13.1 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages
Searching for pipreqs==0.4.11
Best match: pipreqs 0.4.11
Adding pipreqs 0.4.11 to easy-install.pth file
Installing pipreqs script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/bin

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages
Searching for backoff==1.10.0
Best match: backoff 1.10.0
Adding backoff 1.10.0 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages
Searching for diskcache==5.2.1
Best match: diskcache 5.2.1
Adding diskcache 5.2.1 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages
Searching for PyYAML==5.4.1
Best match: PyYAML 5.4.1
Adding PyYAML 5.4.1 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages
Searching for tqdm==4.62.3
Best match: tqdm 4.62.3
Adding tqdm 4.62.3 to easy-install.pth file
Installing tqdm script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/bin

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages
Searching for wheel==0.37.1
Best match: wheel 0.37.1
Adding wheel 0.37.1 to easy-install.pth file
Installing wheel script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/bin

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages
Searching for six==1.16.0
Best match: six 1.16.0
Adding six 1.16.0 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages
Searching for Jinja2==3.0.3
Best match: Jinja2 3.0.3
Adding Jinja2 3.0.3 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages
Searching for beautifulsoup4==4.10.0
Best match: beautifulsoup4 4.10.0
Adding beautifulsoup4 4.10.0 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages
Searching for pyCOMPS==2.5.0
Best match: pyCOMPS 2.5.0
Adding pyCOMPS 2.5.0 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages
Searching for pytest-lazy-fixture==0.6.3
Best match: pytest-lazy-fixture 0.6.3
Adding pytest-lazy-fixture 0.6.3 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages
Searching for SecretStorage==3.3.1
Best match: SecretStorage 3.3.1
Adding SecretStorage 3.3.1 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages
Searching for jeepney==0.7.1
Best match: jeepney 0.7.1
Adding jeepney 0.7.1 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages
Searching for importlib-metadata==4.10.1
Best match: importlib-metadata 4.10.1
Adding importlib-metadata 4.10.1 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages
Searching for lz4==3.1.10
Best match: lz4 3.1.10
Adding lz4 3.1.10 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages
Searching for prodict==0.8.18
Best match: prodict 0.8.18
Adding prodict 0.8.18 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages
Searching for geographiclib==1.52
Best match: geographiclib 1.52
Adding geographiclib 1.52 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages
Searching for pyproj==3.2.1
Best match: pyproj 3.2.1
Adding pyproj 3.2.1 to easy-install.pth file
Installing pyproj script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/bin

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages
Searching for Shapely==1.8.0
Best match: Shapely 1.8.0
Adding Shapely 1.8.0 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages
Searching for sklearn==0.0
Best match: sklearn 0.0
Adding sklearn 0.0 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages
Searching for scipy==1.7.3
Best match: scipy 1.7.3
Adding scipy 1.7.3 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages
Searching for cffi==1.15.0
Best match: cffi 1.15.0
Adding cffi 1.15.0 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages
Searching for cached-property==1.5.2
Best match: cached-property 1.5.2
Adding cached-property 1.5.2 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages
Searching for humanfriendly==10.0
Best match: humanfriendly 10.0
Adding humanfriendly 10.0 to easy-install.pth file
Installing humanfriendly script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/bin

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages
Searching for pytz==2021.3
Best match: pytz 2021.3
Adding pytz 2021.3 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages
Searching for yarg==0.1.9
Best match: yarg 0.1.9
Adding yarg 0.1.9 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages
Searching for docopt==0.6.2
Best match: docopt 0.6.2
Adding docopt 0.6.2 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages
Searching for MarkupSafe==2.0.1
Best match: MarkupSafe 2.0.1
Adding MarkupSafe 2.0.1 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages
Searching for soupsieve==2.3.1
Best match: soupsieve 2.3.1
Adding soupsieve 2.3.1 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages
Searching for requests==2.27.1
Best match: requests 2.27.1
Adding requests 2.27.1 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages
Searching for xdg==5.1.1
Best match: xdg 5.1.1
Adding xdg 5.1.1 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages
Searching for future==0.18.2
Best match: future 0.18.2
Adding future 0.18.2 to easy-install.pth file
Installing futurize script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/bin
Installing pasteurize script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/bin

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages
Searching for pytest==6.2.5
Best match: pytest 6.2.5
Adding pytest 6.2.5 to easy-install.pth file
Installing py.test script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/bin
Installing pytest script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/bin

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages
Searching for cryptography==36.0.1
Best match: cryptography 36.0.1
Adding cryptography 36.0.1 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages
Searching for zipp==3.7.0
Best match: zipp 3.7.0
Adding zipp 3.7.0 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages
Searching for typing-extensions==4.0.1
Best match: typing-extensions 4.0.1
Adding typing-extensions 4.0.1 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages
Searching for certifi==2021.10.8
Best match: certifi 2021.10.8
Adding certifi 2021.10.8 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages
Searching for scikit-learn==1.0.2
Best match: scikit-learn 1.0.2
Adding scikit-learn 1.0.2 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages
Searching for pycparser==2.21
Best match: pycparser 2.21
Adding pycparser 2.21 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages
Searching for urllib3==1.26.8
Best match: urllib3 1.26.8
Adding urllib3 1.26.8 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages
Searching for charset-normalizer==2.0.11
Best match: charset-normalizer 2.0.11
Adding charset-normalizer 2.0.11 to easy-install.pth file
Installing normalizer script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/bin

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages
Searching for idna==3.3
Best match: idna 3.3
Adding idna 3.3 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages
Searching for py==1.11.0
Best match: py 1.11.0
Adding py 1.11.0 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages
Searching for iniconfig==1.1.1
Best match: iniconfig 1.1.1
Adding iniconfig 1.1.1 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages
Searching for toml==0.10.2
Best match: toml 0.10.2
Adding toml 0.10.2 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages
Searching for attrs==21.4.0
Best match: attrs 21.4.0
Adding attrs 21.4.0 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages
Searching for threadpoolctl==3.1.0
Best match: threadpoolctl 3.1.0
Adding threadpoolctl 3.1.0 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages
Searching for joblib==1.1.0
Best match: joblib 1.1.0
Adding joblib 1.1.0 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/latest/lib/python3.7/site-packages
Finished processing dependencies for emodpy-hiv==1.0.2

[rtd-command-info] start-time: 2022-02-02T00:08:47.202556Z, end-time: 2022-02-02T00:08:47.271717Z, duration: 0, exit-code: 0
cat docs/conf.py
# -*- coding: utf-8 -*-
#
# Sphinx Demo docs build configuration file, created by
# sphinx-quickstart on Fri Aug 26 16:52:16 2016.
#
# This file is execfile()d with the current directory set to its
# containing dir.
#
# Note that not all possible configuration values are present in this
# autogenerated file.
#
# All configuration values have a default; values that are commented out
# serve to show the default.

# If extensions (or modules to document with autodoc) are in another directory,
# add these directories to sys.path here. If the directory is relative to the
# docs root, use os.path.abspath to make it absolute, like shown here.
#
import os
import subprocess
import sys
import sphinx_rtd_theme
import configparser
from datetime import datetime

if sys.platform in ["linux", "darwin"]:
    subprocess.check_output(["make", "generate-api"], cwd=os.path.dirname(os.path.abspath(__file__)))
else:
    subprocess.check_output(["make.bat", "generate-api"], cwd=os.path.dirname(os.path.abspath(__file__)))

# -- General configuration ------------------------------------------------

tags.add('emodpyhiv')

# If your docs needs a minimal Sphinx version, state it here.
#
# needs_sphinx = '1.0'

# Add any Sphinx extension module names here, as strings. They can be
# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
# ones.
extensions = [
    'sphinx.ext.mathjax',
    'sphinx.ext.githubpages',
    'sphinx.ext.autodoc',
    'sphinxcontrib.napoleon',
    'sphinx.ext.todo',
    'plantweb.directive',
    'sphinxcontrib.programoutput',
    'sphinx.ext.intersphinx',
    'sphinxext.remoteliteralinclude',
    'sphinx_copybutton'
]

plantuml = 'plantweb'

autodoc_default_options = {
    'member-order': 'bysource',
    'members': None,
    'exclude-members': '__all__'
}

autodoc_mock_imports = []

napoleon_google_docstring = True
# napoleon_numpy_docstring = True

# Add any paths that contain templates here, relative to this directory.
templates_path = ['_templates']

# The suffix(es) of source filenames.
# You can specify multiple suffix as a list of string:
#
# source_suffix = ['.rst', '.md']
source_suffix = '.rst'

# The encoding of source files.
#
# source_encoding = 'utf-8-sig'

# The master toctree document.
master_doc = 'index'

# General information about the project.
project = u'emodpy-hiv'
copyright = f'1999 - {datetime.today().year}, Bill & Melinda Gates Foundation. All rights reserved.'
author = u'Institute for Disease Modeling'

# The version info for the project you're documenting, acts as replacement for
# |version| and |release|, also used in various other places throughout the
# built documents.
#
# The short X.Y version.
#current_path = os.path.dirname(__file__)
#version_path = os.path.join(current_path, '..', '.bumpversion.cfg')
#config = configparser.ConfigParser()
#config.read(version_path)

#version = config['bumpversion']['current_version']
# The full version, including alpha/beta/rc tags.
# release = u'1.0'

# The language for content autogenerated by Sphinx. Refer to docs
# for a list of supported languages.
#
# This is also used if you do content translation via gettext catalogs.
# Usually you set "language" from the command line for these cases.
language = None

# There are two options for replacing |today|: either, you set today to some
# non-false value, then it is used:
#
# today = ''
#
# Else, today_fmt is used as the format for a strftime call.
#
# today_fmt = '%B %d, %Y'

# List of patterns, relative to source directory, that match files and
# directories to ignore when looking for source files.
# This patterns also effect to html_static_path and html_extra_path
exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store']

# The reST default role (used for this markup: `text`) to use for all
# documents.
#
# default_role = None

# If true, '()' will be appended to :func: etc. cross-reference text.
#
# add_function_parentheses = True

# If true, the current module name will be prepended to all description
# unit titles (such as .. function::).
#
# add_module_names = True

# If true, sectionauthor and moduleauthor directives will be shown in the
# output. They are ignored by default.
#
# show_authors = False

# The name of the Pygments (syntax highlighting) style to use.
pygments_style = 'sphinx'

# A list of ignored prefixes for module index sorting.
# modindex_common_prefix = []

# If true, keep warnings as "system message" paragraphs in the built documents.
# keep_warnings = False

# If true, `todo` and `todoList` produce output, else they produce nothing.
todo_include_todos = False

# RST epilog is added to the end of every topic. Useful for replace
# directives to use across the docset.

rst_epilog = "\n.. include:: /variables.txt"

# -- Options for HTML output ----------------------------------------------

# The theme to use for HTML and HTML Help pages.  See the docs for
# a list of builtin themes.
#
html_theme = 'sphinx_rtd_theme'

# Theme options are theme-specific and customize the look and feel of a theme
# further.  For a list of options available for each theme, see the
# docs.
# #
# html_theme_options = {
# }

# Add any paths that contain custom themes here, relative to this directory.
html_theme_path = [sphinx_rtd_theme.get_html_theme_path()]

# The name for this set of Sphinx documents.
# "<project> v<release> docs" by default.
#
# html_title = u'Sphinx Demo v1.0'

# A shorter title for the navigation bar.  Default is the same as html_title.
#
# html_short_title = None

# The name of an image file (relative to this directory) to place at the top
# of the sidebar.
#
html_logo = "images/IDM_white.png"

# The name of an image file (relative to this directory) to use as a favicon of
# the docs.  This file should be a Windows icon file (.ico) being 16x16 or 32x32
# pixels large.
#
html_favicon = "images/favicon.ico"

# Add any paths that contain custom static files (such as style sheets) here,
# relative to this directory. They are copied after the builtin static files,
# so a file named "default.css" will overwrite the builtin "default.css".
html_static_path = ['_static']

html_context = {
    'css_files': [
        '_static/theme_overrides.css',
        '_static/copy_button.css'
        ]
}

html_js_files = ['show_block_by_os.js']

# Add any extra paths that contain custom files (such as robots.txt or
# .htaccess) here, relative to this directory. These files are copied
# directly to the root of the docs.
#
# html_extra_path = []

# If not None, a 'Last updated on:' timestamp is inserted at every page
# bottom, using the given strftime format.
# The empty string is equivalent to '%b %d, %Y'.
#
# html_last_updated_fmt = None

# If true, SmartyPants will be used to convert quotes and dashes to
# typographically correct entities.
#
# html_use_smartypants = True

# Custom sidebar templates, maps document names to template names.
#
# html_sidebars = {}

# Additional templates that should be rendered to pages, maps page names to
# template names.
#
# html_additional_pages = {}

# If false, no module index is generated.
#
# html_domain_indices = True

# If false, no index is generated.
#
# html_use_index = True

# If true, the index is split into individual pages for each letter.
#
# html_split_index = False

# If true, links to the reST sources are added to the pages.
#
html_show_sourcelink = False

# If true, "Created using Sphinx" is shown in the HTML footer. Default is True.
#
html_show_sphinx = False

# If true, "(C) Copyright ..." is shown in the HTML footer. Default is True.
#
# html_show_copyright = True

# If true, an OpenSearch description file will be output, and all pages will
# contain a <link> tag referring to it.  The value of this option must be the
# base URL from which the finished HTML is served.
#
html_use_opensearch = 'www.idmod.org/docs/'

# This is the file name suffix for HTML files (e.g. ".xhtml").
# html_file_suffix = None

# Language to be used for generating the HTML full-text search index.
# Sphinx supports the following languages:
#   'da', 'de', 'en', 'es', 'fi', 'fr', 'hu', 'it', 'ja'
#   'nl', 'no', 'pt', 'ro', 'ru', 'sv', 'tr', 'zh'
#
# html_search_language = 'en'

# A dictionary with options for the search language support, empty by default.
# 'ja' uses this config value.
# 'zh' user can custom change `jieba` dictionary path.
#
# html_search_options = {'type': 'default'}

# The name of a javascript file (relative to the configuration directory) that
# implements a search results scorer. If empty, the default will be used.
#
# html_search_scorer = 'scorer.js'

# Output file base name for HTML help builder.
htmlhelp_basename = 'emodpy-hiv'

# -- Options for LaTeX output ---------------------------------------------

latex_elements = {
    # The paper size ('letterpaper' or 'a4paper').
    #
    # 'papersize': 'letterpaper',

    # The font size ('10pt', '11pt' or '12pt').
    #
    # 'pointsize': '10pt',

    # Additional stuff for the LaTeX preamble.
    #
    # 'preamble': '',

    # Latex figure (float) alignment
    #
    # 'figure_align': 'htbp',
}

# Grouping the document tree into LaTeX files. List of tuples
# (source start file, target name, title,
#  author, documentclass [howto, manual, or own class]).
latex_documents = [
    (master_doc, 'emodpy-hiv-docs.tex', u'emodpy-hiv',
     u'Institute for Disease Modeling', 'manual'),
]

# The name of an image file (relative to this directory) to place at the top of
# the title page.
#
# latex_logo = None

# For "manual" documents, if this is true, then toplevel headings are parts,
# not chapters.
#
# latex_use_parts = False

# If true, show page references after internal links.
#
# latex_show_pagerefs = False

# If true, show URL addresses after external links.
#
# latex_show_urls = False

# Documents to append as an appendix to all manuals.
#
# latex_appendices = []

# It false, will not define \strong, \code,     itleref, \crossref ... but only
# \sphinxstrong, ..., \sphinxtitleref, ... To help avoid clash with user added
# packages.
#
# latex_keep_old_macro_names = True

# If false, no module index is generated.
#
# latex_domain_indices = True


# -- Options for manual page output ---------------------------------------

# One entry per manual page. List of tuples
# (source start file, name, description, authors, manual section).
man_pages = [
    (master_doc, 'emodpy-hiv-docs', u'emodpy-hiv',
     [author], 1)
]

# If true, show URL addresses after external links.
#
man_show_urls = True

# -- Options for Texinfo output -------------------------------------------

# Grouping the document tree into Texinfo files. List of tuples
# (source start file, target name, title, author,
#  dir menu entry, description, category)
texinfo_documents = [
    (master_doc, 'emodpy-hiv-docs', u'emodpy-hiv',
     author, 'Institute for Disease Modeling', 'How to use emodpy for HIV simulations.',
     'Miscellaneous'),
]

# Documents to append as an appendix to all manuals.
#
# texinfo_appendices = []

# If false, no module index is generated.
#
# texinfo_domain_indices = True

# How to display URL addresses: 'footnote', 'no', or 'inline'.
#
# texinfo_show_urls = 'footnote'

# If true, do not generate a @detailmenu in the "Top" node's menu.
#
# texinfo_no_detailmenu = False


# Example configuration for intersphinx: refer to the Python standard library.
intersphinx_mapping = {'python': ('https://docs.python.org/3', None),
                       'emod_api': ('https://docs.idmod.org/projects/emod-api/en/latest/', None),
                       'emodpy': ('https://docs.idmod.org/projects/emodpy/en/latest/', None),
                       'emodpy_generic': ('https://docs.idmod.org/projects/emodpy-generic/en/latest/', None),
                       'idmtools': ('https://docs.idmod.org/projects/idmtools/en/latest/', None),
                       'calibra': ('https://docs.idmod.org/projects/idmtools_calibra/en/latest/', None),
                       'emod-hiv': ('https://docs.idmod.org/projects/emod-hiv/en/latest/', None),
                       'emod-generic': ('https://docs.idmod.org/projects/emod-generic/en/latest/', None),
                       'pycomps': ('https://docs.idmod.org/projects/pycomps/en/latest/', None)
                       }







###########################################################################
#          auto-created readthedocs.org specific configuration            #
###########################################################################


#
# The following code was added during an automated build on readthedocs.org
# It is auto created and injected for every build. The result is based on the
# conf.py.tmpl file found in the readthedocs.org codebase:
# https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl
#
# Note: this file shouldn't rely on extra dependencies.

import importlib
import sys
import os.path

# Borrowed from six.
PY3 = sys.version_info[0] == 3
string_types = str if PY3 else basestring

from sphinx import version_info

# Get suffix for proper linking to GitHub
# This is deprecated in Sphinx 1.3+,
# as each page can have its own suffix
if globals().get('source_suffix', False):
    if isinstance(source_suffix, string_types):
        SUFFIX = source_suffix
    elif isinstance(source_suffix, (list, tuple)):
        # Sphinx >= 1.3 supports list/tuple to define multiple suffixes
        SUFFIX = source_suffix[0]
    elif isinstance(source_suffix, dict):
        # Sphinx >= 1.8 supports a mapping dictionary for multiple suffixes
        SUFFIX = list(source_suffix.keys())[0]  # make a ``list()`` for py2/py3 compatibility
    else:
        # default to .rst
        SUFFIX = '.rst'
else:
    SUFFIX = '.rst'

# Add RTD Static Path. Add to the end because it overwrites previous files.
if not 'html_static_path' in globals():
    html_static_path = []
if os.path.exists('_static'):
    html_static_path.append('_static')

# Add RTD Theme only if they aren't overriding it already
using_rtd_theme = (
    (
        'html_theme' in globals() and
        html_theme in ['default'] and
        # Allow people to bail with a hack of having an html_style
        'html_style' not in globals()
    ) or 'html_theme' not in globals()
)
if using_rtd_theme:
    theme = importlib.import_module('sphinx_rtd_theme')
    html_theme = 'sphinx_rtd_theme'
    html_style = None
    html_theme_options = {}
    if 'html_theme_path' in globals():
        html_theme_path.append(theme.get_html_theme_path())
    else:
        html_theme_path = [theme.get_html_theme_path()]

if globals().get('websupport2_base_url', False):
    websupport2_base_url = 'https://readthedocs.com/websupport'
    websupport2_static_url = 'https://assets.readthedocs.com/'


#Add project information to the template context.
context = {
    'using_theme': using_rtd_theme,
    'html_theme': html_theme,
    'current_version': "latest",
    'version_slug': "latest",
    'MEDIA_URL': "https://media.readthedocs.com/media/",
    'STATIC_URL': "https://assets.readthedocs.com/",
    'PRODUCTION_DOMAIN': "readthedocs.com",
    'versions': [
    ("latest", "/en/latest/"),
    ("stable", "/en/stable/"),
    ("v1.0.2", "/en/v1.0.2/"),
    ("v1.0.1", "/en/v1.0.1/"),
    ("v0.0.41", "/en/v0.0.41/"),
    ("v0.0.38", "/en/v0.0.38/"),
    ("v0.0.37", "/en/v0.0.37/"),
    ("v0.0.35", "/en/v0.0.35/"),
    ("v0.0.22", "/en/v0.0.22/"),
    ],
    'downloads': [ 
    ("pdf", "//docs.idmod.org/_/downloads/emodpy-hiv/en/latest/pdf/"),
    ("html", "//docs.idmod.org/_/downloads/emodpy-hiv/en/latest/htmlzip/"),
    ],
    'subprojects': [ 
    ],
    'slug': 'institute-for-disease-modeling-emodpy-hiv',
    'name': u'emodpy-hiv',
    'rtd_language': u'en',
    'programming_language': u'py',
    'canonical_url': 'https://docs.idmod.org/projects/emodpy-hiv/en/latest/',
    'analytics_code': 'UA-87656833-3',
    'single_version': False,
    'conf_py_path': '/docs/',
    'api_host': 'https://readthedocs.com',
    'github_user': 'InstituteforDiseaseModeling',
    'proxied_api_host': '/_',
    'github_repo': 'emodpy-hiv',
    'github_version': 'master',
    'display_github': True,
    'bitbucket_user': 'None',
    'bitbucket_repo': 'None',
    'bitbucket_version': 'master',
    'display_bitbucket': False,
    'gitlab_user': 'None',
    'gitlab_repo': 'None',
    'gitlab_version': 'master',
    'display_gitlab': False,
    'READTHEDOCS': True,
    'using_theme': (html_theme == "default"),
    'new_theme': (html_theme == "sphinx_rtd_theme"),
    'source_suffix': SUFFIX,
    'ad_free': False,
    'docsearch_disabled': False,
    'user_analytics_code': 'UA-87656833-3',
    'global_analytics_code': 'UA-17997319-2',
    'commit': 'a009e168',
}

# For sphinx >=1.8 we can use html_baseurl to set the canonical URL.
# https://www.sphinx-doc.org/en/master/usage/configuration.html#confval-html_baseurl
if version_info >= (1, 8):
    if not globals().get('html_baseurl'):
        html_baseurl = context['canonical_url']
    context['canonical_url'] = None





if 'html_context' in globals():
    
    html_context.update(context)
    
else:
    html_context = context

# Add custom RTD extension
if 'extensions' in globals():
    # Insert at the beginning because it can interfere
    # with other extensions.
    # See https://github.com/rtfd/readthedocs.org/pull/4054
    extensions.insert(0, "readthedocs_ext.readthedocs")
else:
    extensions = ["readthedocs_ext.readthedocs"]

# Add External version warning banner to the external version documentation
if 'branch' == 'external':
    extensions.insert(1, "readthedocs_ext.external_version_warning")
    readthedocs_vcs_url = 'None'
    readthedocs_build_url = 'https://readthedocs.com/projects/institute-for-disease-modeling-emodpy-hiv/builds/840954/'

project_language = 'en'

# User's Sphinx configurations
language_user = globals().get('language', None)
latex_engine_user = globals().get('latex_engine', None)
latex_elements_user = globals().get('latex_elements', None)

# Remove this once xindy gets installed in Docker image and XINDYOPS
# env variable is supported
# https://github.com/rtfd/readthedocs-docker-images/pull/98
latex_use_xindy = False

chinese = any([
    language_user in ('zh_CN', 'zh_TW'),
    project_language in ('zh_CN', 'zh_TW'),
])

japanese = any([
    language_user == 'ja',
    project_language == 'ja',
])

if chinese:
    latex_engine = latex_engine_user or 'xelatex'

    latex_elements_rtd = {
        'preamble': '\\usepackage[UTF8]{ctex}\n',
    }
    latex_elements = latex_elements_user or latex_elements_rtd
elif japanese:
    latex_engine = latex_engine_user or 'platex'

# Make sure our build directory is always excluded
exclude_patterns = globals().get('exclude_patterns', [])
exclude_patterns.extend(['_build'])

[rtd-command-info] start-time: 2022-02-02T00:08:47.451829Z, end-time: 2022-02-02T00:08:52.094662Z, duration: 4, exit-code: 1
python -m sphinx -T -E -W --keep-going -b html -d _build/doctrees -D language=en . _build/html
Running Sphinx v3.2.1
rm: cannot remove 'modules.rst': No such file or directory
make: [generate-api] Error 1 (ignored)
rm: cannot remove 'emodpy_hiv_index.rst': No such file or directory
make: [generate-api] Error 1 (ignored)
loading translations [en]... done
making output directory... done
loading intersphinx inventory from https://docs.python.org/3/objects.inv...
loading intersphinx inventory from https://docs.idmod.org/projects/emod-api/en/latest/objects.inv...
loading intersphinx inventory from https://docs.idmod.org/projects/emodpy/en/latest/objects.inv...
loading intersphinx inventory from https://docs.idmod.org/projects/emodpy-generic/en/latest/objects.inv...
loading intersphinx inventory from https://docs.idmod.org/projects/idmtools/en/latest/objects.inv...
loading intersphinx inventory from https://docs.idmod.org/projects/idmtools_calibra/en/latest/objects.inv...
loading intersphinx inventory from https://docs.idmod.org/projects/emod-hiv/en/latest/objects.inv...
loading intersphinx inventory from https://docs.idmod.org/projects/emod-generic/en/latest/objects.inv...
loading intersphinx inventory from https://docs.idmod.org/projects/pycomps/en/latest/objects.inv...
building [mo]: targets for 0 po files that are out of date
building [html]: targets for 32 source files that are out of date
updating environment: [new config] 32 added, 0 changed, 0 removed
reading sources... [  3%] emodpy_hiv
reading sources... [  6%] emodpy_hiv.camp_creator
reading sources... [  9%] emodpy_hiv.demographics
reading sources... [ 12%] emodpy_hiv.demographics.DemographicsTemplates
reading sources... [ 15%] emodpy_hiv.demographics.HIVDemographics
reading sources... [ 18%] emodpy_hiv.download
reading sources... [ 21%] emodpy_hiv.interventions
reading sources... [ 25%] emodpy_hiv.interventions.art
reading sources... [ 28%] emodpy_hiv.interventions.artdropout
reading sources... [ 31%] emodpy_hiv.interventions.artstagingbycd4agnosticdiag
reading sources... [ 34%] emodpy_hiv.interventions.artstagingbycd4diag
reading sources... [ 37%] emodpy_hiv.interventions.cascade_helpers
reading sources... [ 40%] emodpy_hiv.interventions.delay
reading sources... [ 43%] emodpy_hiv.interventions.drawblood
reading sources... [ 46%] emodpy_hiv.interventions.malecirc
reading sources... [ 50%] emodpy_hiv.interventions.modcoinf
reading sources... [ 53%] emodpy_hiv.interventions.outbreak
reading sources... [ 56%] emodpy_hiv.interventions.peek_camp
reading sources... [ 59%] emodpy_hiv.interventions.pmtct
reading sources... [ 62%] emodpy_hiv.interventions.prep
reading sources... [ 65%] emodpy_hiv.interventions.random
reading sources... [ 68%] emodpy_hiv.interventions.rapiddiag
reading sources... [ 71%] emodpy_hiv.interventions.reftracker
reading sources... [ 75%] emodpy_hiv.interventions.sigmoiddiag
reading sources... [ 78%] emodpy_hiv.interventions.stipostdebut
reading sources... [ 81%] emodpy_hiv.interventions.utils
reading sources... [ 84%] emodpy_hiv.interventions.yearandsexdiag
reading sources... [ 87%] emodpy_hiv.utils
reading sources... [ 90%] emodpy_hiv_index
reading sources... [ 93%] faq
reading sources... [ 96%] index
reading sources... [100%] installation

WARNING: autodoc: failed to import module 'camp_creator' from module 'emodpy_hiv'; the following exception was raised:
No module named 'emodpy_malaria'
WARNING: autodoc: failed to import module 'peek_camp' from module 'emodpy_hiv.interventions'; the following exception was raised:
No module named 'py_console'
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
writing output... [  3%] emodpy_hiv
writing output... [  6%] emodpy_hiv.camp_creator
writing output... [  9%] emodpy_hiv.demographics
writing output... [ 12%] emodpy_hiv.demographics.DemographicsTemplates
writing output... [ 15%] emodpy_hiv.demographics.HIVDemographics
writing output... [ 18%] emodpy_hiv.download
writing output... [ 21%] emodpy_hiv.interventions
writing output... [ 25%] emodpy_hiv.interventions.art
writing output... [ 28%] emodpy_hiv.interventions.artdropout
writing output... [ 31%] emodpy_hiv.interventions.artstagingbycd4agnosticdiag
writing output... [ 34%] emodpy_hiv.interventions.artstagingbycd4diag
writing output... [ 37%] emodpy_hiv.interventions.cascade_helpers
writing output... [ 40%] emodpy_hiv.interventions.delay
writing output... [ 43%] emodpy_hiv.interventions.drawblood
writing output... [ 46%] emodpy_hiv.interventions.malecirc
writing output... [ 50%] emodpy_hiv.interventions.modcoinf
writing output... [ 53%] emodpy_hiv.interventions.outbreak
writing output... [ 56%] emodpy_hiv.interventions.peek_camp
writing output... [ 59%] emodpy_hiv.interventions.pmtct
writing output... [ 62%] emodpy_hiv.interventions.prep
writing output... [ 65%] emodpy_hiv.interventions.random
writing output... [ 68%] emodpy_hiv.interventions.rapiddiag
writing output... [ 71%] emodpy_hiv.interventions.reftracker
writing output... [ 75%] emodpy_hiv.interventions.sigmoiddiag
writing output... [ 78%] emodpy_hiv.interventions.stipostdebut
writing output... [ 81%] emodpy_hiv.interventions.utils
writing output... [ 84%] emodpy_hiv.interventions.yearandsexdiag
writing output... [ 87%] emodpy_hiv.utils
writing output... [ 90%] emodpy_hiv_index
writing output... [ 93%] faq
writing output... [ 96%] index
writing output... [100%] installation

generating indices...  genindex py-modindexdone
writing additional pages...  search opensearchdone
copying static files... ... done
copying extra files... done
dumping search index in English (code: en)... done
dumping object inventory... done
build finished with problems, 2 warnings.
Updating searchtools for Read the Docs search...