Read the Docs build information Build id: 824215 Project: institute-for-disease-modeling-emod-api Version: latest Commit: 87fb6cc265c3f9c23b25855152653ee5df4770a7 Date: 2022-01-14T19:34:50.751997Z State: finished Success: True [rtd-command-info] start-time: 2022-01-14T19:34:52.193545Z, end-time: 2022-01-14T19:34:59.442172Z, duration: 7, exit-code: 0 git clone --no-single-branch --depth 50 git@github.com:InstituteforDiseaseModeling/emod-api.git . Cloning into '.'... Warning: Permanently added 'github.com,192.30.255.112' (ECDSA) to the list of known hosts. [rtd-command-info] start-time: 2022-01-14T19:34:59.576073Z, end-time: 2022-01-14T19:34:59.807555Z, duration: 0, exit-code: 0 git checkout --force origin/master Note: checking out 'origin/master'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at 87fb6cc Switching to minor release 1.19.12 (#454) [rtd-command-info] start-time: 2022-01-14T19:34:59.931610Z, end-time: 2022-01-14T19:35:00.002264Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2022-01-14T19:35:01.047678Z, end-time: 2022-01-14T19:35:05.890324Z, duration: 4, exit-code: 0 python3.7 -mvirtualenv --system-site-packages Using base prefix '/home/docs/.pyenv/versions/3.7.9' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2022-01-14T19:35:06.016375Z, end-time: 2022-01-14T19:35:08.372030Z, duration: 2, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip setuptools<58.3.0 Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/simple Requirement already satisfied: pip in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (21.3.1) Collecting setuptools<58.3.0 Downloading setuptools-58.2.0-py3-none-any.whl (946 kB) Installing collected packages: setuptools Attempting uninstall: setuptools Found existing installation: setuptools 60.5.0 Uninstalling setuptools-60.5.0: Successfully uninstalled setuptools-60.5.0 Successfully installed setuptools-58.2.0 [rtd-command-info] start-time: 2022-01-14T19:35:08.485928Z, end-time: 2022-01-14T19:35:18.111550Z, duration: 9, exit-code: 0 python -m pip install --upgrade --no-cache-dir -I mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<2.2 setuptools<58.3.0 Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/simple Collecting mock==1.0.1 Downloading mock-1.0.1.zip (861 kB) Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.6-py2.py3-none-any.whl (3.1 MB) Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) Collecting readthedocs-sphinx-ext<2.2 Downloading readthedocs_sphinx_ext-2.1.4-py2.py3-none-any.whl (29 kB) Collecting setuptools<58.3.0 Downloading setuptools-58.2.0-py3-none-any.whl (946 kB) Collecting future Downloading future-0.18.2.tar.gz (829 kB) Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting docutils>=0.11 Downloading docutils-0.18.1-py2.py3-none-any.whl (570 kB) Collecting requests>=2.0.0 Downloading requests-2.27.1-py2.py3-none-any.whl (63 kB) Collecting Pygments>=2.0 Downloading Pygments-2.11.2-py3-none-any.whl (1.1 MB) Collecting Jinja2>=2.3 Downloading Jinja2-3.0.3-py3-none-any.whl (133 kB) Collecting babel!=2.0,>=1.3 Downloading Babel-2.9.1-py2.py3-none-any.whl (8.8 MB) Collecting six>=1.5 Downloading six-1.16.0-py2.py3-none-any.whl (11 kB) Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.2.0-py2.py3-none-any.whl (93 kB) Collecting docutils>=0.11 Downloading docutils-0.17.1-py2.py3-none-any.whl (575 kB) Collecting packaging Downloading packaging-21.3-py3-none-any.whl (40 kB) Collecting imagesize Downloading imagesize-1.3.0-py2.py3-none-any.whl (5.2 kB) Collecting sphinxcontrib-websupport Downloading sphinxcontrib_websupport-1.2.4-py2.py3-none-any.whl (39 kB) Collecting pytz>=2015.7 Downloading pytz-2021.3-py2.py3-none-any.whl (503 kB) Collecting MarkupSafe>=2.0 Downloading MarkupSafe-2.0.1-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (31 kB) Collecting urllib3<1.27,>=1.21.1 Downloading urllib3-1.26.8-py2.py3-none-any.whl (138 kB) Collecting idna<4,>=2.5 Downloading idna-3.3-py3-none-any.whl (61 kB) Collecting charset-normalizer~=2.0.0 Downloading charset_normalizer-2.0.10-py3-none-any.whl (39 kB) Collecting certifi>=2017.4.17 Downloading certifi-2021.10.8-py2.py3-none-any.whl (149 kB) Collecting pyparsing!=3.0.5,>=2.0.2 Downloading pyparsing-3.0.6-py3-none-any.whl (97 kB) Collecting sphinxcontrib-serializinghtml Downloading sphinxcontrib_serializinghtml-1.1.5-py2.py3-none-any.whl (94 kB) Building wheels for collected packages: mock, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23773 sha256=d478fd08f40f6630cbf723b35746ed4835926094c51a3ed50d612e3202859ef7 Stored in directory: /tmp/pip-ephem-wheel-cache-gwyom47r/wheels/7a/94/b1/0fdc5339a5bd487a5cc15421ec200d9ba3e2aa7190e4a727f1 Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491070 sha256=a3f142305ff2778609f84ce0e7cba3191d4b3a9858d60255d812b6a1cf26a664 Stored in directory: /tmp/pip-ephem-wheel-cache-gwyom47r/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0 Successfully built mock future Installing collected packages: urllib3, sphinxcontrib-serializinghtml, pytz, pyparsing, MarkupSafe, idna, charset-normalizer, certifi, sphinxcontrib-websupport, snowballstemmer, six, setuptools, requests, Pygments, packaging, Jinja2, imagesize, future, docutils, babel, alabaster, sphinx, commonmark, sphinx-rtd-theme, recommonmark, readthedocs-sphinx-ext, pillow, mock ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts. matplotlib 3.3.2 requires pillow>=6.2.0, but you have pillow 5.4.1 which is incompatible. Successfully installed Jinja2-3.0.3 MarkupSafe-2.0.1 Pygments-2.11.2 alabaster-0.7.12 babel-2.9.1 certifi-2021.10.8 charset-normalizer-2.0.10 commonmark-0.8.1 docutils-0.17.1 future-0.18.2 idna-3.3 imagesize-1.3.0 mock-1.0.1 packaging-21.3 pillow-5.4.1 pyparsing-3.0.6 pytz-2021.3 readthedocs-sphinx-ext-2.1.4 recommonmark-0.5.0 requests-2.27.1 setuptools-58.2.0 six-1.16.0 snowballstemmer-2.2.0 sphinx-1.8.6 sphinx-rtd-theme-0.4.3 sphinxcontrib-serializinghtml-1.1.5 sphinxcontrib-websupport-1.2.4 urllib3-1.26.8 [rtd-command-info] start-time: 2022-01-14T19:35:18.216664Z, end-time: 2022-01-14T19:35:24.511424Z, duration: 6, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r requirements.txt Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/simple Requirement already satisfied: numpy!=1.19.4 in /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages (from -r requirements.txt (line 1)) (1.19.2) Collecting pyyaml Downloading PyYAML-6.0-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (596 kB) Requirement already satisfied: pandas in /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages (from -r requirements.txt (line 3)) (1.1.3) Requirement already satisfied: scipy in /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages (from -r requirements.txt (line 4)) (1.5.3) Collecting shapely Downloading Shapely-1.8.0-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.whl (1.1 MB) Collecting pyproj Downloading pyproj-3.2.1-cp37-cp37m-manylinux2010_x86_64.whl (6.3 MB) Collecting geographiclib Downloading geographiclib-1.52-py3-none-any.whl (38 kB) Collecting sklearn Downloading sklearn-0.0.tar.gz (1.1 kB) Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting lz4 Downloading lz4-3.1.10-cp37-cp37m-manylinux2010_x86_64.whl (1.8 MB) Collecting prodict Downloading prodict-0.8.18.tar.gz (4.2 kB) Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Requirement already satisfied: python-dateutil>=2.7.3 in /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages (from pandas->-r requirements.txt (line 3)) (2.8.1) Requirement already satisfied: pytz>=2017.2 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from pandas->-r requirements.txt (line 3)) (2021.3) Requirement already satisfied: certifi in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from pyproj->-r requirements.txt (line 6)) (2021.10.8) Collecting scikit-learn Downloading scikit_learn-1.0.2-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (24.8 MB) Requirement already satisfied: six>=1.5 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from python-dateutil>=2.7.3->pandas->-r requirements.txt (line 3)) (1.16.0) Collecting joblib>=0.11 Downloading joblib-1.1.0-py2.py3-none-any.whl (306 kB) Collecting threadpoolctl>=2.0.0 Downloading threadpoolctl-3.0.0-py3-none-any.whl (14 kB) Building wheels for collected packages: sklearn, prodict Building wheel for sklearn (setup.py): started Building wheel for sklearn (setup.py): finished with status 'done' Created wheel for sklearn: filename=sklearn-0.0-py2.py3-none-any.whl size=1310 sha256=d6515e3403171e2f9bf2f3d282468f94cc6e0ba2ab475aa088467e80023bc1e9 Stored in directory: /tmp/pip-ephem-wheel-cache-_99duuv7/wheels/46/ef/c3/157e41f5ee1372d1be90b09f74f82b10e391eaacca8f22d33e Building wheel for prodict (setup.py): started Building wheel for prodict (setup.py): finished with status 'done' Created wheel for prodict: filename=prodict-0.8.18-py3-none-any.whl size=4223 sha256=a53d17e485e8b04fdb33c862d326ef90048e6bd07db8cbc4c70c68e66e355ef7 Stored in directory: /tmp/pip-ephem-wheel-cache-_99duuv7/wheels/a8/e6/67/cda708a2cd06853a75a33ecab7ade9eda84e962a7635406c70 Successfully built sklearn prodict Installing collected packages: threadpoolctl, joblib, scikit-learn, sklearn, shapely, pyyaml, pyproj, prodict, lz4, geographiclib Successfully installed geographiclib-1.52 joblib-1.1.0 lz4-3.1.10 prodict-0.8.18 pyproj-3.2.1 pyyaml-6.0 scikit-learn-1.0.2 shapely-1.8.0 sklearn-0.0 threadpoolctl-3.0.0 [rtd-command-info] start-time: 2022-01-14T19:35:24.626706Z, end-time: 2022-01-14T19:35:31.027545Z, duration: 6, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r docs/requirements.txt Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/simple Collecting sphinx-rtd-theme~=0.5.0 Downloading sphinx_rtd_theme-0.5.2-py2.py3-none-any.whl (9.1 MB) Collecting sphinxcontrib-napoleon~=0.7 Downloading sphinxcontrib_napoleon-0.7-py2.py3-none-any.whl (17 kB) Collecting sphinx~=3.2.1 Downloading Sphinx-3.2.1-py3-none-any.whl (2.9 MB) Collecting plantweb~=1.2.1 Downloading plantweb-1.2.1-py3-none-any.whl (20 kB) Collecting sphinxcontrib-programoutput~=0.16 Downloading sphinxcontrib_programoutput-0.17-py2.py3-none-any.whl (22 kB) Collecting py-make Downloading py_make-0.1.1-py2.py3-none-any.whl (9.4 kB) Collecting PyGithub~=1.51 Downloading PyGithub-1.55-py3-none-any.whl (291 kB) Collecting pygit2~=1.2.1 Downloading pygit2-1.2.1-cp37-cp37m-manylinux2010_x86_64.whl (3.0 MB) Collecting sphinxext.remoteliteralinclude Downloading sphinxext_remoteliteralinclude-0.3.0-py3-none-any.whl (6.3 kB) Collecting sphinx-copybutton~=0.4.0 Downloading sphinx_copybutton-0.4.0-py3-none-any.whl (12 kB) Collecting docutils<0.17 Downloading docutils-0.16-py2.py3-none-any.whl (548 kB) Collecting pockets>=0.3 Downloading pockets-0.9.1-py2.py3-none-any.whl (26 kB) Requirement already satisfied: six>=1.5.2 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from sphinxcontrib-napoleon~=0.7->-r docs/requirements.txt (line 2)) (1.16.0) Requirement already satisfied: packaging in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from sphinx~=3.2.1->-r docs/requirements.txt (line 3)) (21.3) Collecting sphinxcontrib-qthelp Downloading sphinxcontrib_qthelp-1.0.3-py2.py3-none-any.whl (90 kB) Requirement already satisfied: sphinxcontrib-serializinghtml in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from sphinx~=3.2.1->-r docs/requirements.txt (line 3)) (1.1.5) Requirement already satisfied: babel>=1.3 in 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(line 3)) (2.11.2) Collecting sphinxcontrib-applehelp Downloading sphinxcontrib_applehelp-1.0.2-py2.py3-none-any.whl (121 kB) Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from sphinx~=3.2.1->-r docs/requirements.txt (line 3)) (58.2.0) Requirement already satisfied: alabaster<0.8,>=0.7 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from sphinx~=3.2.1->-r docs/requirements.txt (line 3)) (0.7.12) Collecting sphinxcontrib-devhelp Downloading sphinxcontrib_devhelp-1.0.2-py2.py3-none-any.whl (84 kB) Collecting sphinxcontrib-htmlhelp Downloading sphinxcontrib_htmlhelp-2.0.0-py2.py3-none-any.whl (100 kB) Requirement already satisfied: snowballstemmer>=1.1 in 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/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from requests>=2.5.0->sphinx~=3.2.1->-r docs/requirements.txt (line 3)) (2021.10.8) Requirement already satisfied: charset-normalizer~=2.0.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from requests>=2.5.0->sphinx~=3.2.1->-r docs/requirements.txt (line 3)) (2.0.10) Requirement already satisfied: urllib3<1.27,>=1.21.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from requests>=2.5.0->sphinx~=3.2.1->-r docs/requirements.txt (line 3)) (1.26.8) Collecting wrapt<2,>=1.10 Downloading wrapt-1.13.3-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (79 kB) Requirement already satisfied: pyparsing!=3.0.5,>=2.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from packaging->sphinx~=3.2.1->-r docs/requirements.txt (line 3)) (3.0.6) Building wheels for collected packages: docopt Building wheel for docopt (setup.py): started Building wheel for docopt (setup.py): finished with status 'done' Created wheel for docopt: filename=docopt-0.6.2-py2.py3-none-any.whl size=13723 sha256=b400902faddf0f2d9afa828bba9a60486907c58b0c46dbd90efbb8fdb0749898 Stored in directory: /tmp/pip-ephem-wheel-cache-kripbeav/wheels/72/b0/3f/1d95f96ff986c7dfffe46ce2be4062f38ebd04b506c77c81b9 Successfully built docopt Installing collected packages: pycparser, wrapt, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, docutils, cffi, sphinx, pynacl, pyjwt, pockets, docopt, deprecated, cached-property, sphinxext.remoteliteralinclude, sphinxcontrib-programoutput, sphinxcontrib-napoleon, sphinx-rtd-theme, sphinx-copybutton, PyGithub, pygit2, py-make, plantweb Attempting uninstall: docutils Found existing installation: docutils 0.17.1 Uninstalling docutils-0.17.1: Successfully uninstalled docutils-0.17.1 Attempting uninstall: sphinx Found existing installation: Sphinx 1.8.6 Uninstalling Sphinx-1.8.6: Successfully uninstalled Sphinx-1.8.6 Attempting uninstall: sphinx-rtd-theme Found existing installation: sphinx-rtd-theme 0.4.3 Uninstalling sphinx-rtd-theme-0.4.3: Successfully uninstalled sphinx-rtd-theme-0.4.3 Successfully installed PyGithub-1.55 cached-property-1.5.2 cffi-1.15.0 deprecated-1.2.13 docopt-0.6.2 docutils-0.16 plantweb-1.2.1 pockets-0.9.1 py-make-0.1.1 pycparser-2.21 pygit2-1.2.1 pyjwt-2.3.0 pynacl-1.5.0 sphinx-3.2.1 sphinx-copybutton-0.4.0 sphinx-rtd-theme-0.5.2 sphinxcontrib-applehelp-1.0.2 sphinxcontrib-devhelp-1.0.2 sphinxcontrib-htmlhelp-2.0.0 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-napoleon-0.7 sphinxcontrib-programoutput-0.17 sphinxcontrib-qthelp-1.0.3 sphinxext.remoteliteralinclude-0.3.0 wrapt-1.13.3 [rtd-command-info] start-time: 2022-01-14T19:35:31.138772Z, end-time: 2022-01-14T19:35:31.911349Z, duration: 0, exit-code: 0 python ./setup.py install --force running install running bdist_egg running egg_info creating emod_api.egg-info writing emod_api.egg-info/PKG-INFO writing dependency_links to emod_api.egg-info/dependency_links.txt writing requirements to emod_api.egg-info/requires.txt writing top-level names to emod_api.egg-info/top_level.txt writing manifest file 'emod_api.egg-info/SOURCES.txt' reading manifest file 'emod_api.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no directories found matching 'emod_api/tests/data/*' warning: no directories found matching 'emod_api/dtk_tools/serialization/test-data/*' adding license file 'LICENSE' writing manifest file 'emod_api.egg-info/SOURCES.txt' installing library code to build/bdist.linux-x86_64/egg running install_lib running build_py creating build creating build/lib creating build/lib/emod_api copying emod_api/__main__.py -> build/lib/emod_api copying emod_api/__init__.py -> build/lib/emod_api copying emod_api/campaign.py -> build/lib/emod_api copying emod_api/schema_to_class.py -> build/lib/emod_api creating build/lib/examples copying examples/spatial_report.py -> build/lib/examples copying examples/weather_file.py -> build/lib/examples copying examples/write_config_from_default_and_params.py -> build/lib/examples copying examples/intervention_from_schema.py -> build/lib/examples copying examples/default_from_schema.py -> build/lib/examples copying examples/migration.py -> build/lib/examples copying examples/serialized_file_mc_to_sc.py -> build/lib/examples copying examples/__init__.py -> build/lib/examples copying examples/some_config_i_found.py -> build/lib/examples copying examples/insetchart.py -> build/lib/examples creating build/lib/emod_api/schema copying emod_api/schema/dtk_post_process_schema.py -> build/lib/emod_api/schema copying emod_api/schema/__main__.py -> build/lib/emod_api/schema copying emod_api/schema/get_schema.py -> build/lib/emod_api/schema copying emod_api/schema/__init__.py -> build/lib/emod_api/schema creating build/lib/emod_api/tabularoutput copying emod_api/tabularoutput/__main__.py -> build/lib/emod_api/tabularoutput copying emod_api/tabularoutput/__init__.py -> build/lib/emod_api/tabularoutput creating build/lib/emod_api/config copying emod_api/config/from_poi_and_binary.py -> build/lib/emod_api/config copying emod_api/config/from_schema.py -> build/lib/emod_api/config copying emod_api/config/dtk_post_process_adhocevents.py -> build/lib/emod_api/config copying emod_api/config/from_overrides.py -> build/lib/emod_api/config copying emod_api/config/default_from_schema.py -> build/lib/emod_api/config copying emod_api/config/__main__.py -> build/lib/emod_api/config copying emod_api/config/default_from_schema_no_validation.py -> build/lib/emod_api/config copying emod_api/config/schema_to_config.py -> build/lib/emod_api/config copying emod_api/config/dtk_pre_process_adhocevents.py -> build/lib/emod_api/config copying emod_api/config/__init__.py -> build/lib/emod_api/config copying emod_api/config/dtk_pre_process_w5ml.py -> build/lib/emod_api/config creating build/lib/emod_api/spatialreports copying emod_api/spatialreports/spatial.py -> build/lib/emod_api/spatialreports copying emod_api/spatialreports/__main__.py -> build/lib/emod_api/spatialreports copying emod_api/spatialreports/__init__.py -> build/lib/emod_api/spatialreports creating build/lib/emod_api/weather copying emod_api/weather/weather.py -> build/lib/emod_api/weather copying emod_api/weather/__main__.py -> build/lib/emod_api/weather copying emod_api/weather/__init__.py -> build/lib/emod_api/weather creating build/lib/emod_api/serialization copying emod_api/serialization/dtkFileSupport.py -> build/lib/emod_api/serialization copying emod_api/serialization/__main__.py -> build/lib/emod_api/serialization copying emod_api/serialization/dtkFileUtility.py -> build/lib/emod_api/serialization copying emod_api/serialization/dtkFileTools.py -> build/lib/emod_api/serialization copying emod_api/serialization/SerializedPopulation.py -> build/lib/emod_api/serialization copying emod_api/serialization/__init__.py -> build/lib/emod_api/serialization copying emod_api/serialization/CensusAndModPop.py -> build/lib/emod_api/serialization creating build/lib/emod_api/interventions copying emod_api/interventions/simple_vaccine.py -> build/lib/emod_api/interventions copying emod_api/interventions/import_pressure.py -> build/lib/emod_api/interventions copying emod_api/interventions/utils.py -> build/lib/emod_api/interventions copying emod_api/interventions/migration.py -> build/lib/emod_api/interventions copying emod_api/interventions/__main__.py -> build/lib/emod_api/interventions copying emod_api/interventions/outbreak.py -> build/lib/emod_api/interventions copying emod_api/interventions/__init__.py -> build/lib/emod_api/interventions copying emod_api/interventions/node_multiplier.py -> build/lib/emod_api/interventions copying emod_api/interventions/common.py -> build/lib/emod_api/interventions creating build/lib/emod_api/migration copying emod_api/migration/migration.py -> build/lib/emod_api/migration copying emod_api/migration/__main__.py -> build/lib/emod_api/migration copying emod_api/migration/__init__.py -> build/lib/emod_api/migration creating build/lib/emod_api/demographics copying emod_api/demographics/DemographicsInputDataParsers.py -> build/lib/emod_api/demographics copying emod_api/demographics/PreDefinedDistributions.py -> build/lib/emod_api/demographics copying emod_api/demographics/Node.py -> build/lib/emod_api/demographics copying emod_api/demographics/__main__.py -> build/lib/emod_api/demographics copying emod_api/demographics/DemographicsGenerator.py -> build/lib/emod_api/demographics copying emod_api/demographics/demographics_utils.py -> build/lib/emod_api/demographics copying emod_api/demographics/Demographics.py -> build/lib/emod_api/demographics copying emod_api/demographics/grid_construction.py -> build/lib/emod_api/demographics copying emod_api/demographics/BaseInputFile.py -> build/lib/emod_api/demographics copying emod_api/demographics/DemographicsTemplates.py -> build/lib/emod_api/demographics copying emod_api/demographics/PropertiesAndAttributes.py -> build/lib/emod_api/demographics copying emod_api/demographics/Updateable.py -> build/lib/emod_api/demographics copying emod_api/demographics/__init__.py -> build/lib/emod_api/demographics creating build/lib/emod_api/channelreports copying emod_api/channelreports/channels.py -> build/lib/emod_api/channelreports copying emod_api/channelreports/__main__.py -> build/lib/emod_api/channelreports copying emod_api/channelreports/__init__.py -> build/lib/emod_api/channelreports creating build/lib/emod_api/migration/client copying emod_api/migration/client/client.py -> build/lib/emod_api/migration/client copying emod_api/migration/client/__init__.py -> build/lib/emod_api/migration/client creating build/lib/tests creating build/lib/tests/unittests copying tests/unittests/test_version.py -> build/lib/tests/unittests copying tests/unittests/test_properties_and_attributes.py -> build/lib/tests/unittests copying tests/unittests/test_schema_imports.py -> build/lib/tests/unittests copying tests/unittests/test_demographics_imports.py -> build/lib/tests/unittests copying tests/unittests/test_migration_imports.py -> build/lib/tests/unittests copying tests/unittests/test_config_imports.py -> build/lib/tests/unittests copying tests/unittests/__init__.py -> build/lib/tests/unittests creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/egg creating build/bdist.linux-x86_64/egg/emod_api creating build/bdist.linux-x86_64/egg/emod_api/schema copying build/lib/emod_api/schema/dtk_post_process_schema.py -> build/bdist.linux-x86_64/egg/emod_api/schema copying build/lib/emod_api/schema/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/schema copying build/lib/emod_api/schema/get_schema.py -> build/bdist.linux-x86_64/egg/emod_api/schema copying build/lib/emod_api/schema/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/schema creating build/bdist.linux-x86_64/egg/emod_api/tabularoutput copying build/lib/emod_api/tabularoutput/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/tabularoutput copying build/lib/emod_api/tabularoutput/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/tabularoutput creating build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/from_poi_and_binary.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/from_schema.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/dtk_post_process_adhocevents.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/from_overrides.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/default_from_schema.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/default_from_schema_no_validation.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/schema_to_config.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/dtk_pre_process_adhocevents.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/dtk_pre_process_w5ml.py -> build/bdist.linux-x86_64/egg/emod_api/config creating build/bdist.linux-x86_64/egg/emod_api/spatialreports copying build/lib/emod_api/spatialreports/spatial.py -> build/bdist.linux-x86_64/egg/emod_api/spatialreports copying build/lib/emod_api/spatialreports/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/spatialreports copying build/lib/emod_api/spatialreports/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/spatialreports creating build/bdist.linux-x86_64/egg/emod_api/weather copying build/lib/emod_api/weather/weather.py -> build/bdist.linux-x86_64/egg/emod_api/weather copying build/lib/emod_api/weather/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/weather copying build/lib/emod_api/weather/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/weather copying build/lib/emod_api/__main__.py -> build/bdist.linux-x86_64/egg/emod_api creating build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/dtkFileSupport.py -> build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/dtkFileUtility.py -> build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/dtkFileTools.py -> build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/SerializedPopulation.py -> build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/CensusAndModPop.py -> build/bdist.linux-x86_64/egg/emod_api/serialization creating build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/simple_vaccine.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/import_pressure.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/utils.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/migration.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/outbreak.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/node_multiplier.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/common.py -> build/bdist.linux-x86_64/egg/emod_api/interventions creating build/bdist.linux-x86_64/egg/emod_api/migration copying build/lib/emod_api/migration/migration.py -> build/bdist.linux-x86_64/egg/emod_api/migration copying build/lib/emod_api/migration/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/migration copying build/lib/emod_api/migration/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/migration creating build/bdist.linux-x86_64/egg/emod_api/migration/client copying build/lib/emod_api/migration/client/client.py -> build/bdist.linux-x86_64/egg/emod_api/migration/client copying build/lib/emod_api/migration/client/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/migration/client creating build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/DemographicsInputDataParsers.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/PreDefinedDistributions.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/Node.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/DemographicsGenerator.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/demographics_utils.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/Demographics.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/grid_construction.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/BaseInputFile.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/DemographicsTemplates.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/PropertiesAndAttributes.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/Updateable.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/__init__.py -> build/bdist.linux-x86_64/egg/emod_api copying build/lib/emod_api/campaign.py -> build/bdist.linux-x86_64/egg/emod_api creating build/bdist.linux-x86_64/egg/emod_api/channelreports copying build/lib/emod_api/channelreports/channels.py -> build/bdist.linux-x86_64/egg/emod_api/channelreports copying build/lib/emod_api/channelreports/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/channelreports copying build/lib/emod_api/channelreports/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/channelreports copying build/lib/emod_api/schema_to_class.py -> build/bdist.linux-x86_64/egg/emod_api creating build/bdist.linux-x86_64/egg/examples copying build/lib/examples/spatial_report.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/weather_file.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/write_config_from_default_and_params.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/intervention_from_schema.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/default_from_schema.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/migration.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/serialized_file_mc_to_sc.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/__init__.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/some_config_i_found.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/insetchart.py -> build/bdist.linux-x86_64/egg/examples creating build/bdist.linux-x86_64/egg/tests creating build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_version.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_properties_and_attributes.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_schema_imports.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_demographics_imports.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_migration_imports.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_config_imports.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/__init__.py -> build/bdist.linux-x86_64/egg/tests/unittests byte-compiling build/bdist.linux-x86_64/egg/emod_api/schema/dtk_post_process_schema.py to dtk_post_process_schema.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/schema/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/schema/get_schema.py to get_schema.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/schema/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/tabularoutput/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/tabularoutput/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/from_poi_and_binary.py to from_poi_and_binary.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/from_schema.py to from_schema.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/dtk_post_process_adhocevents.py to dtk_post_process_adhocevents.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/from_overrides.py to from_overrides.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/default_from_schema.py to default_from_schema.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/default_from_schema_no_validation.py to default_from_schema_no_validation.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/schema_to_config.py to schema_to_config.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/dtk_pre_process_adhocevents.py to dtk_pre_process_adhocevents.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/dtk_pre_process_w5ml.py to dtk_pre_process_w5ml.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/spatialreports/spatial.py to spatial.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/spatialreports/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/spatialreports/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/weather/weather.py to weather.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/weather/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/weather/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/dtkFileSupport.py to dtkFileSupport.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/dtkFileUtility.py to dtkFileUtility.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/dtkFileTools.py to dtkFileTools.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/SerializedPopulation.py to SerializedPopulation.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/CensusAndModPop.py to CensusAndModPop.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/simple_vaccine.py to simple_vaccine.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/import_pressure.py to import_pressure.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/utils.py to utils.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/migration.py to migration.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/outbreak.py to outbreak.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/node_multiplier.py to node_multiplier.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/common.py to common.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/migration/migration.py to migration.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/migration/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/migration/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/migration/client/client.py to client.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/migration/client/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/DemographicsInputDataParsers.py to DemographicsInputDataParsers.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/PreDefinedDistributions.py to PreDefinedDistributions.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/Node.py to Node.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/DemographicsGenerator.py to DemographicsGenerator.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/demographics_utils.py to demographics_utils.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/Demographics.py to Demographics.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/grid_construction.py to grid_construction.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/BaseInputFile.py to BaseInputFile.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/DemographicsTemplates.py to DemographicsTemplates.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/PropertiesAndAttributes.py to PropertiesAndAttributes.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/Updateable.py to Updateable.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/campaign.py to campaign.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/channelreports/channels.py to channels.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/channelreports/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/channelreports/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/schema_to_class.py to schema_to_class.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/spatial_report.py to spatial_report.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/weather_file.py to weather_file.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/write_config_from_default_and_params.py to write_config_from_default_and_params.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/intervention_from_schema.py to intervention_from_schema.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/default_from_schema.py to default_from_schema.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/migration.py to migration.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/serialized_file_mc_to_sc.py to serialized_file_mc_to_sc.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/some_config_i_found.py to some_config_i_found.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/insetchart.py to insetchart.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_version.py to test_version.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_properties_and_attributes.py to test_properties_and_attributes.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_schema_imports.py to test_schema_imports.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_demographics_imports.py to test_demographics_imports.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_migration_imports.py to test_migration_imports.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_config_imports.py to test_config_imports.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/__init__.py to __init__.cpython-37.pyc creating build/bdist.linux-x86_64/egg/EGG-INFO copying emod_api.egg-info/PKG-INFO -> build/bdist.linux-x86_64/egg/EGG-INFO copying emod_api.egg-info/SOURCES.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying emod_api.egg-info/dependency_links.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying emod_api.egg-info/requires.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying emod_api.egg-info/top_level.txt -> build/bdist.linux-x86_64/egg/EGG-INFO zip_safe flag not set; analyzing archive contents... emod_api.config.__pycache__.from_poi_and_binary.cpython-37: module references __file__ emod_api.serialization.__pycache__.dtkFileTools.cpython-37: module references __file__ emod_api.serialization.__pycache__.dtkFileUtility.cpython-37: module references __file__ examples.__pycache__.insetchart.cpython-37: module references __file__ examples.__pycache__.spatial_report.cpython-37: module references __file__ examples.__pycache__.weather_file.cpython-37: module references __file__ creating dist creating 'dist/emod_api-1.19.12-py3.7.egg' and adding 'build/bdist.linux-x86_64/egg' to it removing 'build/bdist.linux-x86_64/egg' (and everything under it) Processing emod_api-1.19.12-py3.7.egg creating /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages/emod_api-1.19.12-py3.7.egg Extracting emod_api-1.19.12-py3.7.egg to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Adding emod-api 1.19.12 to easy-install.pth file Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages/emod_api-1.19.12-py3.7.egg Processing dependencies for emod-api==1.19.12 Searching for prodict==0.8.18 Best match: prodict 0.8.18 Adding prodict 0.8.18 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for lz4==3.1.10 Best match: lz4 3.1.10 Adding lz4 3.1.10 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for sklearn==0.0 Best match: sklearn 0.0 Adding sklearn 0.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for geographiclib==1.52 Best match: geographiclib 1.52 Adding geographiclib 1.52 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for pyproj==3.2.1 Best match: pyproj 3.2.1 Adding pyproj 3.2.1 to easy-install.pth file Installing pyproj script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for Shapely==1.8.0 Best match: Shapely 1.8.0 Adding Shapely 1.8.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for scipy==1.5.3 Best match: scipy 1.5.3 Adding scipy 1.5.3 to easy-install.pth file Using /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages Searching for pandas==1.1.3 Best match: pandas 1.1.3 pandas 1.1.3 is already the active version in easy-install.pth Using /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages Searching for PyYAML==6.0 Best match: PyYAML 6.0 Adding PyYAML 6.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for numpy==1.19.2 Best match: numpy 1.19.2 numpy 1.19.2 is already the active version in easy-install.pth Installing f2py script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin Installing f2py3 script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin Installing f2py3.7 script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin Using /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages Searching for scikit-learn==1.0.2 Best match: scikit-learn 1.0.2 Adding scikit-learn 1.0.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for certifi==2021.10.8 Best match: certifi 2021.10.8 Adding certifi 2021.10.8 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for python-dateutil==2.8.1 Best match: python-dateutil 2.8.1 python-dateutil 2.8.1 is already the active version in easy-install.pth Using /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages Searching for pytz==2021.3 Best match: pytz 2021.3 Adding pytz 2021.3 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for threadpoolctl==3.0.0 Best match: threadpoolctl 3.0.0 Adding threadpoolctl 3.0.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for joblib==1.1.0 Best match: joblib 1.1.0 Adding joblib 1.1.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for six==1.16.0 Best match: six 1.16.0 Adding six 1.16.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Finished processing dependencies for emod-api==1.19.12 [rtd-command-info] start-time: 2022-01-14T19:35:34.749282Z, end-time: 2022-01-14T19:35:34.813867Z, duration: 0, exit-code: 0 cat docs/conf.py # -*- coding: utf-8 -*- # # Sphinx Demo docs build configuration file, created by # sphinx-quickstart on Fri Aug 26 16:52:16 2016. # # This file is execfile()d with the current directory set to its # containing dir. # # Note that not all possible configuration values are present in this # autogenerated file. # # All configuration values have a default; values that are commented out # serve to show the default. # If extensions (or modules to document with autodoc) are in another directory, # add these directories to sys.path here. If the directory is relative to the # docs root, use os.path.abspath to make it absolute, like shown here. # import os import subprocess import sys import sphinx_rtd_theme import configparser from datetime import datetime if sys.platform in ["linux", "darwin"]: subprocess.check_output(["make", "generate-api"], cwd=os.path.dirname(os.path.abspath(__file__))) else: subprocess.check_output(["make.bat", "generate-api"], cwd=os.path.dirname(os.path.abspath(__file__))) # -- General configuration ------------------------------------------------ tags.add('emodapi') # If your docs needs a minimal Sphinx version, state it here. # # needs_sphinx = '1.0' # Add any Sphinx extension module names here, as strings. They can be # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom # ones. extensions = [ 'sphinx.ext.mathjax', 'sphinx.ext.githubpages', 'sphinx.ext.autodoc', 'sphinxcontrib.napoleon', 'sphinx.ext.todo', 'plantweb.directive', 'sphinxcontrib.programoutput', 'sphinx_copybutton', 'sphinx.ext.intersphinx', 'sphinxext.remoteliteralinclude' ] plantuml = 'plantweb' autodoc_default_options = { 'member-order': 'bysource', 'members': None, 'exclude-members': '__all__' } autodoc_mock_imports = ['emod_api.dtk_tools'] napoleon_google_docstring = True # napoleon_numpy_docstring = True # Add any paths that contain templates here, relative to this directory. templates_path = ['_templates'] # The suffix(es) of source filenames. # You can specify multiple suffix as a list of string: # # source_suffix = ['.rst', '.md'] source_suffix = '.rst' # The encoding of source files. # # source_encoding = 'utf-8-sig' # The master toctree document. master_doc = 'index' # General information about the project. project = u'emod-api' copyright = f'1999 - {datetime.today().year}, Bill & Melinda Gates Foundation. All rights reserved.' author = u'Institute for Disease Modeling' # The version info for the project you're documenting, acts as replacement for # |version| and |release|, also used in various other places throughout the # built documents. # # The short X.Y version. #current_path = os.path.dirname(__file__) #version_path = os.path.join(current_path, '..', '.bumpversion.cfg') #config = configparser.ConfigParser() #config.read(version_path) #version = config['bumpversion']['current_version'] # The full version, including alpha/beta/rc tags. # release = u'1.0' # The language for content autogenerated by Sphinx. Refer to docs # for a list of supported languages. # # This is also used if you do content translation via gettext catalogs. # Usually you set "language" from the command line for these cases. language = None # There are two options for replacing |today|: either, you set today to some # non-false value, then it is used: # # today = '' # # Else, today_fmt is used as the format for a strftime call. # # today_fmt = '%B %d, %Y' # List of patterns, relative to source directory, that match files and # directories to ignore when looking for source files. # This patterns also effect to html_static_path and html_extra_path exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store'] # The reST default role (used for this markup: `text`) to use for all # documents. # # default_role = None # If true, '()' will be appended to :func: etc. cross-reference text. # # add_function_parentheses = True # If true, the current module name will be prepended to all description # unit titles (such as .. function::). # # add_module_names = True # If true, sectionauthor and moduleauthor directives will be shown in the # output. They are ignored by default. # # show_authors = False # The name of the Pygments (syntax highlighting) style to use. pygments_style = 'sphinx' # A list of ignored prefixes for module index sorting. # modindex_common_prefix = [] # If true, keep warnings as "system message" paragraphs in the built documents. # keep_warnings = False # If true, `todo` and `todoList` produce output, else they produce nothing. todo_include_todos = False # RST epilog is added to the end of every topic. Useful for replace # directives to use across the docset. rst_epilog = "\n.. include:: /variables.txt" # -- Options for HTML output ---------------------------------------------- # The theme to use for HTML and HTML Help pages. See the docs for # a list of builtin themes. # html_theme = 'sphinx_rtd_theme' # Theme options are theme-specific and customize the look and feel of a theme # further. For a list of options available for each theme, see the # docs. # # # html_theme_options = { # } # Add any paths that contain custom themes here, relative to this directory. html_theme_path = [sphinx_rtd_theme.get_html_theme_path()] # The name for this set of Sphinx documents. # " v docs" by default. # # html_title = u'Sphinx Demo v1.0' # A shorter title for the navigation bar. Default is the same as html_title. # # html_short_title = None # The name of an image file (relative to this directory) to place at the top # of the sidebar. # html_logo = "images/IDM_white.png" # The name of an image file (relative to this directory) to use as a favicon of # the docs. This file should be a Windows icon file (.ico) being 16x16 or 32x32 # pixels large. # html_favicon = "images/favicon.ico" # Add any paths that contain custom static files (such as style sheets) here, # relative to this directory. They are copied after the builtin static files, # so a file named "default.css" will overwrite the builtin "default.css". html_static_path = ['_static'] html_context = { 'css_files': [ '_static/theme_overrides.css', '_static/copy_button.css' ] } html_js_files = ['show_block_by_os.js'] # Add any extra paths that contain custom files (such as robots.txt or # .htaccess) here, relative to this directory. These files are copied # directly to the root of the docs. # # html_extra_path = [] # If not None, a 'Last updated on:' timestamp is inserted at every page # bottom, using the given strftime format. # The empty string is equivalent to '%b %d, %Y'. # # html_last_updated_fmt = None # If true, SmartyPants will be used to convert quotes and dashes to # typographically correct entities. # # html_use_smartypants = True # Custom sidebar templates, maps document names to template names. # # html_sidebars = {} # Additional templates that should be rendered to pages, maps page names to # template names. # # html_additional_pages = {} # If false, no module index is generated. # # html_domain_indices = True # If false, no index is generated. # # html_use_index = True # If true, the index is split into individual pages for each letter. # # html_split_index = False # If true, links to the reST sources are added to the pages. # html_show_sourcelink = False # If true, "Created using Sphinx" is shown in the HTML footer. Default is True. # html_show_sphinx = False # If true, "(C) Copyright ..." is shown in the HTML footer. Default is True. # # html_show_copyright = True # If true, an OpenSearch description file will be output, and all pages will # contain a tag referring to it. The value of this option must be the # base URL from which the finished HTML is served. # html_use_opensearch = 'www.idmod.org/docs/' # This is the file name suffix for HTML files (e.g. ".xhtml"). # html_file_suffix = None # Language to be used for generating the HTML full-text search index. # Sphinx supports the following languages: # 'da', 'de', 'en', 'es', 'fi', 'fr', 'hu', 'it', 'ja' # 'nl', 'no', 'pt', 'ro', 'ru', 'sv', 'tr', 'zh' # # html_search_language = 'en' # A dictionary with options for the search language support, empty by default. # 'ja' uses this config value. # 'zh' user can custom change `jieba` dictionary path. # # html_search_options = {'type': 'default'} # The name of a javascript file (relative to the configuration directory) that # implements a search results scorer. If empty, the default will be used. # # html_search_scorer = 'scorer.js' # Output file base name for HTML help builder. htmlhelp_basename = 'EMOD-API' # -- Options for LaTeX output --------------------------------------------- latex_elements = { # The paper size ('letterpaper' or 'a4paper'). # # 'papersize': 'letterpaper', # The font size ('10pt', '11pt' or '12pt'). # # 'pointsize': '10pt', # Additional stuff for the LaTeX preamble. # # 'preamble': '', # Latex figure (float) alignment # # 'figure_align': 'htbp', } # Grouping the document tree into LaTeX files. List of tuples # (source start file, target name, title, # author, documentclass [howto, manual, or own class]). latex_documents = [ (master_doc, 'emod-api-docs.tex', u'emod-api', u'Institute for Disease Modeling', 'manual'), ] # The name of an image file (relative to this directory) to place at the top of # the title page. # # latex_logo = None # For "manual" documents, if this is true, then toplevel headings are parts, # not chapters. # # latex_use_parts = False # If true, show page references after internal links. # # latex_show_pagerefs = False # If true, show URL addresses after external links. # # latex_show_urls = False # Documents to append as an appendix to all manuals. # # latex_appendices = [] # It false, will not define \strong, \code, itleref, \crossref ... but only # \sphinxstrong, ..., \sphinxtitleref, ... To help avoid clash with user added # packages. # # latex_keep_old_macro_names = True # If false, no module index is generated. # # latex_domain_indices = True # -- Options for manual page output --------------------------------------- # One entry per manual page. List of tuples # (source start file, name, description, authors, manual section). man_pages = [ (master_doc, 'emod-api-docs', u'emod-api', [author], 1) ] # If true, show URL addresses after external links. # man_show_urls = True # -- Options for Texinfo output ------------------------------------------- # Grouping the document tree into Texinfo files. List of tuples # (source start file, target name, title, author, # dir menu entry, description, category) texinfo_documents = [ (master_doc, 'emod-api-docs', u'emod-api', author, 'Institute for Disease Modeling', 'How to use emodpy for disease simulations.', 'Miscellaneous'), ] # Documents to append as an appendix to all manuals. # # texinfo_appendices = [] # If false, no module index is generated. # # texinfo_domain_indices = True # How to display URL addresses: 'footnote', 'no', or 'inline'. # # texinfo_show_urls = 'footnote' # If true, do not generate a @detailmenu in the "Top" node's menu. # # texinfo_no_detailmenu = False # Example configuration for intersphinx: refer to the Python standard library. intersphinx_mapping = {'python': ('https://docs.python.org/3', None), 'emodpy': ('https://docs.idmod.org/projects/emodpy/en/latest/', None), 'idmtools': ('https://docs.idmod.org/projects/idmtools/en/latest/', None), 'pycomps': ('https://docs.idmod.org/projects/pycomps/en/latest/', None) } ########################################################################### # auto-created readthedocs.org specific configuration # ########################################################################### # # The following code was added during an automated build on readthedocs.org # It is auto created and injected for every build. The result is based on the # conf.py.tmpl file found in the readthedocs.org codebase: # https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl # # Note: this file shouldn't rely on extra dependencies. import importlib import sys import os.path # Borrowed from six. PY3 = sys.version_info[0] == 3 string_types = str if PY3 else basestring from sphinx import version_info # Get suffix for proper linking to GitHub # This is deprecated in Sphinx 1.3+, # as each page can have its own suffix if globals().get('source_suffix', False): if isinstance(source_suffix, string_types): SUFFIX = source_suffix elif isinstance(source_suffix, (list, tuple)): # Sphinx >= 1.3 supports list/tuple to define multiple suffixes SUFFIX = source_suffix[0] elif isinstance(source_suffix, dict): # Sphinx >= 1.8 supports a mapping dictionary for multiple suffixes SUFFIX = list(source_suffix.keys())[0] # make a ``list()`` for py2/py3 compatibility else: # default to .rst SUFFIX = '.rst' else: SUFFIX = '.rst' # Add RTD Static Path. Add to the end because it overwrites previous files. if not 'html_static_path' in globals(): html_static_path = [] if os.path.exists('_static'): html_static_path.append('_static') # Add RTD Theme only if they aren't overriding it already using_rtd_theme = ( ( 'html_theme' in globals() and html_theme in ['default'] and # Allow people to bail with a hack of having an html_style 'html_style' not in globals() ) or 'html_theme' not in globals() ) if using_rtd_theme: theme = importlib.import_module('sphinx_rtd_theme') html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} if 'html_theme_path' in globals(): html_theme_path.append(theme.get_html_theme_path()) else: html_theme_path = [theme.get_html_theme_path()] if globals().get('websupport2_base_url', False): websupport2_base_url = 'https://readthedocs.com/websupport' websupport2_static_url = 'https://assets.readthedocs.com/' #Add project information to the template context. context = { 'using_theme': using_rtd_theme, 'html_theme': html_theme, 'current_version': "latest", 'version_slug': "latest", 'MEDIA_URL': "https://media.readthedocs.com/media/", 'STATIC_URL': "https://assets.readthedocs.com/", 'PRODUCTION_DOMAIN': "readthedocs.com", 'versions': [ ("latest", "/en/latest/"), ("v2.0.1", "/en/v2.0.1/"), ("v1.19.2", "/en/v1.19.2/"), ("v1.18.1", "/en/v1.18.1/"), ("v1.17.4", "/en/v1.17.4/"), ("v1.17.3", "/en/v1.17.3/"), ("v1.17.2", "/en/v1.17.2/"), ("v1.16.10", "/en/v1.16.10/"), ("v1.16.5", "/en/v1.16.5/"), ("v1.16.2", "/en/v1.16.2/"), ("v1.15.6", "/en/v1.15.6/"), ("v1.15.4", "/en/v1.15.4/"), ("v1.15.1", "/en/v1.15.1/"), ("v1.14.7", "/en/v1.14.7/"), ("v1.14.1", "/en/v1.14.1/"), ("v1.13.1", "/en/v1.13.1/"), ("v1.12.1", "/en/v1.12.1/"), ("v1.11.7", "/en/v1.11.7/"), ("v1.11.4", "/en/v1.11.4/"), ("v1.11.0", "/en/v1.11.0/"), ("v1.10.8", "/en/v1.10.8/"), ("v1.10.6", "/en/v1.10.6/"), ("v1.10.5", "/en/v1.10.5/"), ("v1.10.3", "/en/v1.10.3/"), ("v1.10.2", "/en/v1.10.2/"), ("v1.9.2", "/en/v1.9.2/"), ("v1.9.1", "/en/v1.9.1/"), ("v1.8.9", "/en/v1.8.9/"), ("v1.8.8", "/en/v1.8.8/"), ("v1.8.6", "/en/v1.8.6/"), ("v1.8.2", "/en/v1.8.2/"), ("v1.7.5", "/en/v1.7.5/"), ("v1.7.4", "/en/v1.7.4/"), ("v1.7.1", "/en/v1.7.1/"), ("v1.6.3", "/en/v1.6.3/"), ("v1.5.1", "/en/v1.5.1/"), ("v1.5.0", "/en/v1.5.0/"), ], 'downloads': [ ("pdf", "//docs.idmod.org/_/downloads/emod-api/en/latest/pdf/"), ("html", "//docs.idmod.org/_/downloads/emod-api/en/latest/htmlzip/"), ], 'subprojects': [ ], 'slug': 'institute-for-disease-modeling-emod-api', 'name': u'emod-api', 'rtd_language': u'en', 'programming_language': u'py', 'canonical_url': 'https://docs.idmod.org/projects/emod-api/en/latest/', 'analytics_code': 'UA-87656833-3', 'single_version': False, 'conf_py_path': '/docs/', 'api_host': 'https://readthedocs.com', 'github_user': 'InstituteforDiseaseModeling', 'proxied_api_host': '/_', 'github_repo': 'emod-api', 'github_version': 'master', 'display_github': True, 'bitbucket_user': 'None', 'bitbucket_repo': 'None', 'bitbucket_version': 'master', 'display_bitbucket': False, 'gitlab_user': 'None', 'gitlab_repo': 'None', 'gitlab_version': 'master', 'display_gitlab': False, 'READTHEDOCS': True, 'using_theme': (html_theme == "default"), 'new_theme': (html_theme == "sphinx_rtd_theme"), 'source_suffix': SUFFIX, 'ad_free': False, 'docsearch_disabled': False, 'user_analytics_code': 'UA-87656833-3', 'global_analytics_code': 'UA-17997319-2', 'commit': '87fb6cc2', } # For sphinx >=1.8 we can use html_baseurl to set the canonical URL. # https://www.sphinx-doc.org/en/master/usage/configuration.html#confval-html_baseurl if version_info >= (1, 8): if not globals().get('html_baseurl'): html_baseurl = context['canonical_url'] context['canonical_url'] = None if 'html_context' in globals(): html_context.update(context) else: html_context = context # Add custom RTD extension if 'extensions' in globals(): # Insert at the beginning because it can interfere # with other extensions. # See https://github.com/rtfd/readthedocs.org/pull/4054 extensions.insert(0, "readthedocs_ext.readthedocs") else: extensions = ["readthedocs_ext.readthedocs"] # Add External version warning banner to the external version documentation if 'branch' == 'external': extensions.insert(1, "readthedocs_ext.external_version_warning") readthedocs_vcs_url = 'None' readthedocs_build_url = 'https://readthedocs.com/projects/institute-for-disease-modeling-emod-api/builds/824215/' project_language = 'en' # User's Sphinx configurations language_user = globals().get('language', None) latex_engine_user = globals().get('latex_engine', None) latex_elements_user = globals().get('latex_elements', None) # Remove this once xindy gets installed in Docker image and XINDYOPS # env variable is supported # https://github.com/rtfd/readthedocs-docker-images/pull/98 latex_use_xindy = False chinese = any([ language_user in ('zh_CN', 'zh_TW'), project_language in ('zh_CN', 'zh_TW'), ]) japanese = any([ language_user == 'ja', project_language == 'ja', ]) if chinese: latex_engine = latex_engine_user or 'xelatex' latex_elements_rtd = { 'preamble': '\\usepackage[UTF8]{ctex}\n', } latex_elements = latex_elements_user or latex_elements_rtd elif japanese: latex_engine = latex_engine_user or 'platex' # Make sure our build directory is always excluded exclude_patterns = globals().get('exclude_patterns', []) exclude_patterns.extend(['_build']) [rtd-command-info] start-time: 2022-01-14T19:35:34.937380Z, end-time: 2022-01-14T19:35:56.646446Z, duration: 21, exit-code: 0 python -m sphinx -T -E -W --keep-going -b html -d _build/doctrees -D language=en . _build/html Running Sphinx v3.2.1 rm: cannot remove 'emod_api_index.rst': No such file or directory rm: cannot remove 'modules.rst': No such file or directory make: [generate-api] Error 1 (ignored) loading translations [en]... done making output directory... done loading intersphinx inventory from https://docs.python.org/3/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emodpy/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/idmtools/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/pycomps/en/latest/objects.inv... building [mo]: targets for 0 po files that are out of date building [html]: targets for 58 source files that are out of date updating environment: [new config] 58 added, 0 changed, 0 removed reading sources... [ 1%] emod_api reading sources... [ 3%] emod_api.campaign reading sources... [ 5%] emod_api.channelreports reading sources... [ 6%] emod_api.channelreports.channels reading sources... [ 8%] emod_api.config reading sources... [ 10%] emod_api.config.default_from_schema reading sources... [ 12%] emod_api.config.default_from_schema_no_validation reading sources... [ 13%] emod_api.config.dtk_post_process_adhocevents reading sources... [ 15%] emod_api.config.dtk_pre_process_adhocevents reading sources... [ 17%] emod_api.config.dtk_pre_process_w5ml reading sources... [ 18%] emod_api.config.from_overrides reading sources... [ 20%] emod_api.config.from_poi_and_binary reading sources... [ 22%] emod_api.config.from_schema reading sources... [ 24%] emod_api.config.schema_to_config emod_api.config.schema_to_config is deprecated. Please use emod_api.config.from_schema. reading sources... [ 25%] emod_api.demographics reading sources... [ 27%] emod_api.demographics.BaseInputFile reading sources... [ 29%] emod_api.demographics.Demographics reading sources... [ 31%] emod_api.demographics.DemographicsGenerator reading sources... [ 32%] emod_api.demographics.DemographicsInputDataParsers reading sources... [ 34%] emod_api.demographics.DemographicsTemplates reading sources... [ 36%] emod_api.demographics.Node reading sources... [ 37%] emod_api.demographics.PreDefinedDistributions reading sources... [ 39%] emod_api.demographics.PropertiesAndAttributes reading sources... [ 41%] emod_api.demographics.Updateable reading sources... [ 43%] emod_api.demographics.demographics_utils reading sources... [ 44%] emod_api.demographics.grid_construction reading sources... [ 46%] emod_api.interventions reading sources... [ 48%] emod_api.interventions.common reading sources... [ 50%] emod_api.interventions.import_pressure reading sources... [ 51%] emod_api.interventions.migration reading sources... [ 53%] emod_api.interventions.node_multiplier reading sources... [ 55%] emod_api.interventions.outbreak reading sources... [ 56%] emod_api.interventions.simple_vaccine reading sources... [ 58%] emod_api.interventions.utils reading sources... [ 60%] emod_api.migration reading sources... [ 62%] emod_api.migration.client reading sources... [ 63%] emod_api.migration.client.client reading sources... [ 65%] emod_api.migration.migration reading sources... [ 67%] emod_api.schema reading sources... [ 68%] emod_api.schema.dtk_post_process_schema reading sources... [ 70%] emod_api.schema.get_schema reading sources... [ 72%] emod_api.schema_to_class reading sources... [ 74%] emod_api.serialization reading sources... [ 75%] emod_api.serialization.CensusAndModPop reading sources... [ 77%] emod_api.serialization.SerializedPopulation reading sources... [ 79%] emod_api.serialization.dtkFileSupport reading sources... [ 81%] emod_api.serialization.dtkFileTools reading sources... [ 82%] emod_api.serialization.dtkFileUtility reading sources... [ 84%] emod_api.spatialreports reading sources... [ 86%] emod_api.spatialreports.spatial reading sources... [ 87%] emod_api.tabularoutput reading sources... [ 89%] emod_api.weather reading sources... [ 91%] emod_api.weather.weather reading sources... [ 93%] emod_api_index reading sources... [ 94%] faq reading sources... [ 96%] glossary reading sources... [ 98%] index reading sources... [100%] installation looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 1%] emod_api writing output... [ 3%] emod_api.campaign writing output... [ 5%] emod_api.channelreports writing output... [ 6%] emod_api.channelreports.channels writing output... [ 8%] emod_api.config writing output... [ 10%] emod_api.config.default_from_schema writing output... [ 12%] emod_api.config.default_from_schema_no_validation writing output... [ 13%] emod_api.config.dtk_post_process_adhocevents writing output... [ 15%] emod_api.config.dtk_pre_process_adhocevents writing output... [ 17%] emod_api.config.dtk_pre_process_w5ml writing output... [ 18%] emod_api.config.from_overrides writing output... [ 20%] emod_api.config.from_poi_and_binary writing output... [ 22%] emod_api.config.from_schema writing output... [ 24%] emod_api.config.schema_to_config writing output... [ 25%] emod_api.demographics writing output... [ 27%] emod_api.demographics.BaseInputFile writing output... [ 29%] emod_api.demographics.Demographics writing output... [ 31%] emod_api.demographics.DemographicsGenerator writing output... [ 32%] emod_api.demographics.DemographicsInputDataParsers writing output... [ 34%] emod_api.demographics.DemographicsTemplates writing output... [ 36%] emod_api.demographics.Node writing output... [ 37%] emod_api.demographics.PreDefinedDistributions writing output... [ 39%] emod_api.demographics.PropertiesAndAttributes writing output... [ 41%] emod_api.demographics.Updateable writing output... [ 43%] emod_api.demographics.demographics_utils writing output... [ 44%] emod_api.demographics.grid_construction writing output... [ 46%] emod_api.interventions writing output... [ 48%] emod_api.interventions.common writing output... [ 50%] emod_api.interventions.import_pressure writing output... [ 51%] emod_api.interventions.migration writing output... [ 53%] emod_api.interventions.node_multiplier writing output... [ 55%] emod_api.interventions.outbreak writing output... [ 56%] emod_api.interventions.simple_vaccine writing output... [ 58%] emod_api.interventions.utils writing output... [ 60%] emod_api.migration writing output... [ 62%] emod_api.migration.client writing output... [ 63%] emod_api.migration.client.client writing output... [ 65%] emod_api.migration.migration writing output... [ 67%] emod_api.schema writing output... [ 68%] emod_api.schema.dtk_post_process_schema writing output... [ 70%] emod_api.schema.get_schema writing output... [ 72%] emod_api.schema_to_class writing output... [ 74%] emod_api.serialization writing output... [ 75%] emod_api.serialization.CensusAndModPop writing output... [ 77%] emod_api.serialization.SerializedPopulation writing output... [ 79%] emod_api.serialization.dtkFileSupport writing output... [ 81%] emod_api.serialization.dtkFileTools writing output... [ 82%] emod_api.serialization.dtkFileUtility writing output... [ 84%] emod_api.spatialreports writing output... [ 86%] emod_api.spatialreports.spatial writing output... [ 87%] emod_api.tabularoutput writing output... [ 89%] emod_api.weather writing output... [ 91%] emod_api.weather.weather writing output... [ 93%] emod_api_index writing output... [ 94%] faq writing output... [ 96%] glossary writing output... [ 98%] index writing output... [100%] installation generating indices... genindex py-modindexdone writing additional pages... search opensearchdone copying static files... ... done copying extra files... done dumping search index in English (code: en)... done dumping object inventory... done build succeeded. The HTML pages are in _build/html. Updating searchtools for Read the Docs search... /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/importlib/_bootstrap.py:219: RuntimeWarning: numpy.ufunc size changed, may indicate binary incompatibility. Expected 192 from C header, got 216 from PyObject return f(*args, **kwds) [rtd-command-info] start-time: 2022-01-14T19:35:56.804720Z, end-time: 2022-01-14T19:35:59.131199Z, duration: 2, exit-code: 0 python -m sphinx -T -W --keep-going -b readthedocssinglehtmllocalmedia -d _build/doctrees -D language=en . _build/localmedia Running Sphinx v3.2.1 rm: cannot remove 'modules.rst': No such file or directory make: [generate-api] Error 1 (ignored) loading translations [en]... done making output directory... done loading pickled environment... done building [mo]: targets for 0 po files that are out of date building [readthedocssinglehtmllocalmedia]: all documents updating environment: 0 added, 1 changed, 0 removed reading sources... [100%] emod_api_index looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done assembling single document... installation faq emod_api_index emod_api emod_api.channelreports emod_api.channelreports.channels emod_api.config emod_api.config.default_from_schema emod_api.config.default_from_schema_no_validation emod_api.config.dtk_post_process_adhocevents emod_api.config.dtk_pre_process_adhocevents emod_api.config.dtk_pre_process_w5ml emod_api.config.from_overrides emod_api.config.from_poi_and_binary emod_api.config.from_schema emod_api.config.schema_to_config emod_api.demographics emod_api.demographics.BaseInputFile emod_api.demographics.Demographics emod_api.demographics.DemographicsGenerator emod_api.demographics.DemographicsInputDataParsers emod_api.demographics.DemographicsTemplates emod_api.demographics.Node emod_api.demographics.PreDefinedDistributions emod_api.demographics.PropertiesAndAttributes emod_api.demographics.Updateable emod_api.demographics.demographics_utils emod_api.demographics.grid_construction emod_api.interventions emod_api.interventions.common emod_api.interventions.import_pressure emod_api.interventions.migration emod_api.interventions.node_multiplier emod_api.interventions.outbreak emod_api.interventions.simple_vaccine emod_api.interventions.utils emod_api.migration emod_api.migration.client emod_api.migration.client.client emod_api.migration.migration emod_api.schema emod_api.schema.dtk_post_process_schema emod_api.schema.get_schema emod_api.serialization emod_api.serialization.CensusAndModPop emod_api.serialization.SerializedPopulation emod_api.serialization.dtkFileSupport emod_api.serialization.dtkFileTools emod_api.serialization.dtkFileUtility emod_api.spatialreports emod_api.spatialreports.spatial emod_api.tabularoutput emod_api.weather emod_api.weather.weather emod_api.campaign emod_api.schema_to_class glossary done writing... done writing additional files... opensearchdone copying static files... ... done copying extra files... done dumping object inventory... done build succeeded. The HTML page is in _build/localmedia. Updating searchtools for Read the Docs search... [rtd-command-info] start-time: 2022-01-14T19:35:59.276929Z, end-time: 2022-01-14T19:36:01.503017Z, duration: 2, exit-code: 0 python -m sphinx -b latex -D language=en -d _build/doctrees . _build/latex Running Sphinx v3.2.1 rm: cannot remove 'modules.rst': No such file or directory make: [generate-api] Error 1 (ignored) loading translations [en]... done making output directory... done loading pickled environment... done building [mo]: targets for 0 po files that are out of date building [latex]: all documents updating environment: 0 added, 1 changed, 0 removed reading sources... [100%] emod_api_index looking for now-outdated files... none found pickling environment... done checking consistency... done processing emod-api-docs.tex... index installation faq emod_api_index emod_api emod_api.channelreports emod_api.channelreports.channels emod_api.config emod_api.config.default_from_schema emod_api.config.default_from_schema_no_validation emod_api.config.dtk_post_process_adhocevents emod_api.config.dtk_pre_process_adhocevents emod_api.config.dtk_pre_process_w5ml emod_api.config.from_overrides emod_api.config.from_poi_and_binary emod_api.config.from_schema emod_api.config.schema_to_config emod_api.demographics emod_api.demographics.BaseInputFile emod_api.demographics.Demographics emod_api.demographics.DemographicsGenerator emod_api.demographics.DemographicsInputDataParsers emod_api.demographics.DemographicsTemplates emod_api.demographics.Node emod_api.demographics.PreDefinedDistributions emod_api.demographics.PropertiesAndAttributes emod_api.demographics.Updateable emod_api.demographics.demographics_utils emod_api.demographics.grid_construction emod_api.interventions emod_api.interventions.common emod_api.interventions.import_pressure emod_api.interventions.migration emod_api.interventions.node_multiplier emod_api.interventions.outbreak emod_api.interventions.simple_vaccine emod_api.interventions.utils emod_api.migration emod_api.migration.client emod_api.migration.client.client emod_api.migration.migration emod_api.schema emod_api.schema.dtk_post_process_schema emod_api.schema.get_schema emod_api.serialization emod_api.serialization.CensusAndModPop emod_api.serialization.SerializedPopulation emod_api.serialization.dtkFileSupport emod_api.serialization.dtkFileTools emod_api.serialization.dtkFileUtility emod_api.spatialreports emod_api.spatialreports.spatial emod_api.tabularoutput emod_api.weather emod_api.weather.weather emod_api.campaign emod_api.schema_to_class glossary resolving references... done writing... done copying TeX support files... copying TeX support files... done build succeeded. The LaTeX files are in _build/latex. Run 'make' in that directory to run these through (pdf)latex (use `make latexpdf' here to do that automatically). WARNING: Missing searchtools: /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/checkouts/latest/docs/_build/latex/_static/searchtools.js [rtd-command-info] start-time: 2022-01-14T19:36:01.951728Z, end-time: 2022-01-14T19:36:02.028913Z, duration: 0, exit-code: 0 cat latexmkrc $latex = 'latex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $pdflatex = 'pdflatex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $lualatex = 'lualatex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $xelatex = 'xelatex --no-pdf ' . $ENV{'LATEXOPTS'} . ' %O %S'; $makeindex = 'makeindex -s python.ist %O -o %D %S'; add_cus_dep( "glo", "gls", 0, "makeglo" ); sub makeglo { return system( "makeindex -s gglo.ist -o '$_[0].gls' '$_[0].glo'" ); } [rtd-command-info] start-time: 2022-01-14T19:36:02.220663Z, end-time: 2022-01-14T19:36:04.845168Z, duration: 2, exit-code: 0 latexmk -r latexmkrc -pdf -f -dvi- -ps- -jobname=institute-for-disease-modeling-emod-api -interaction=nonstopmode Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 1, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 2, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 3, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 4, chunk 1. Subroutine makeglo redefined at (eval 11) line 7, chunk 1. 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[12] LaTeX Warning: Hyper reference `emod_api.demographics.PropertiesAndAttributes:e mod_api.demographics.PropertiesAndAttributes.IndividualAttributes.MortalityDist ribution' on page 13 undefined on input line 978. Overfull \hbox (149.53976pt too wide) in paragraph at lines 978--978 []\T1/ptm/m/it/10 distribution: \T1/ptm/m/n/10 emod_api.demographics.Properties AndAttributes.IndividualAttributes.MortalityDistribution LaTeX Warning: Hyper reference `emod_api.demographics.PropertiesAndAttributes:e mod_api.demographics.PropertiesAndAttributes.IndividualAttributes.AgeDistributi on' on page 13 undefined on input line 992. Overfull \hbox (98.42032pt too wide) in paragraph at lines 992--992 []\T1/ptm/m/it/10 distribution: \T1/ptm/m/n/10 emod_api.demographics.Properties AndAttributes.IndividualAttributes.AgeDistribution\T1/pcr/m/n/10 ) [13] Underfull \hbox (badness 10000) in paragraph at lines 1054--1054 []\T1/ptm/m/it/10 CrudeBirthRate=0.04\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Crude-Mor - Underfull \hbox (badness 10000) in paragraph at lines 1143--1143 []\T1/ptm/m/it/10 file_male\T1/ptm/m/n/10 , \T1/ptm/m/it/10 file_female\T1/ptm/ m/n/10 , \T1/ptm/m/it/10 in-ter-val_fit=[1970, 1980]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1155--1155 []\T1/ptm/m/it/10 nodes=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1155--1155 \T1/ptm/m/it/10 meta_data: [][]dict[][] Overfull \hbox (7.52411pt too wide) in paragraph at lines 1155--1155 \T1/ptm/m/it/10 ual_attributes=None\T1/ptm/m/n/10 , Overfull \hbox (14.18416pt too wide) in paragraph at lines 1155--1155 \T1/ptm/m/it/10 node_attributes=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1155--1155 \T1/ptm/m/it/10 mor-tal- Overfull \hbox (16.5839pt too wide) in paragraph at lines 1155--1155 \T1/ptm/m/it/10 ity_distribution=None\T1/pcr/m/n/10 ) [14] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pcr.fd) Overfull \hbox (18.60422pt too wide) in paragraph at lines 1216--1216 []\T1/ptm/m/it/10 res_in_arcsec\T1/pcr/m/n/10 ) Overfull \hbox (13.07484pt too wide) in paragraph at lines 1235--1235 []\T1/ptm/m/it/10 nodes\T1/ptm/m/n/10 , Overfull \hbox (5.01491pt too wide) in paragraph at lines 1235--1235 \T1/ptm/m/it/10 con- Overfull \hbox (12.23463pt too wide) in paragraph at lines 1235--1235 \T1/ptm/m/it/10 cerns: Overfull \hbox (2.79494pt too wide) in paragraph at lines 1235--1235 \T1/ptm/m/it/10 Op- Overfull \hbox (457.54115pt too wide) in paragraph at lines 1235--1235 \T1/ptm/m/it/10 tional[Union[emod_api.dtk_tools.demographics.DemographicsGenera torConcern.DemographicsGeneratorConcern, Overfull \hbox (429.49101pt too wide) in paragraph at lines 1235--1235 \T1/ptm/m/it/10 List[emod_api.dtk_tools.demographics.DemographicsGeneratorConce rn.DemographicsGeneratorConcern]]] Underfull \hbox (badness 10000) in paragraph at lines 1235--1235 \T1/ptm/m/it/10 = Overfull \hbox (10.85487pt too wide) in paragraph at lines 1235--1235 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (84.4637pt too wide) in paragraph at lines 1235--1235 \T1/ptm/m/it/10 res_in_arcsec=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 custom\TS1/ptm/ m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (115.46402pt too wide) in paragraph at lines 1235--1235 \T1/ptm/m/it/10 node_id_from_lat_long=False\T1/pcr/m/n/10 ) [15] Underfull \hbox (badness 10000) in paragraph at lines 1320--1320 []\T1/ptm/m/it/10 df\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-mo-graph- Underfull \hbox (badness 10000) in paragraph at lines 1320--1320 \T1/ptm/m/it/10 ics_filename: Op- Underfull \hbox (badness 10000) in paragraph at lines 1320--1320 \T1/ptm/m/it/10 tional[[][]str[][]] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1320--1320 \T1/ptm/m/it/10 con-cerns: Op- Overfull \hbox (379.54115pt too wide) in paragraph at lines 1320--1320 \T1/ptm/m/it/10 tional[Union[emod_api.dtk_tools.demographics.DemographicsGenera torConcern.DemographicsGeneratorConcern, Overfull \hbox (351.49101pt too wide) in paragraph at lines 1320--1320 \T1/ptm/m/it/10 List[emod_api.dtk_tools.demographics.DemographicsGeneratorConce rn.DemographicsGeneratorConcern]]] Underfull \hbox (badness 10000) in paragraph at lines 1320--1320 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Overfull \hbox (6.4637pt too wide) in paragraph at lines 1320--1320 \T1/ptm/m/it/10 res_in_arcsec=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 custom\TS1/ptm/ m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (30.83415pt too wide) in paragraph at lines 1320--1320 \T1/ptm/m/it/10 node_id_from_lat_long=True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1320--1320 \T1/ptm/m/it/10 de-fault_population: Underfull \hbox (badness 10000) in paragraph at lines 1320--1320 [][]\T1/ptm/m/it/10 int[][] = 1000\T1/ptm/m/n/10 , Overfull \hbox (79.21327pt too wide) in paragraph at lines 1320--1320 \T1/ptm/m/it/10 load_other_columns_as_attributes=False\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1320--1320 \T1/ptm/m/it/10 tional[List[[][]str[][]]] Underfull \hbox (badness 10000) in paragraph at lines 1320--1320 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ex- Underfull \hbox (badness 10000) in paragraph at lines 1320--1320 \T1/ptm/m/it/10 clude_columns: Underfull \hbox (badness 10000) in paragraph at lines 1320--1320 \T1/ptm/m/it/10 Op-tional[List[[][]str[][]]] Underfull \hbox (badness 10000) in paragraph at lines 1320--1320 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Overfull \hbox (0.89452pt too wide) in paragraph at lines 1320--1320 \T1/ptm/m/it/10 nodeid_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1320--1320 \T1/ptm/m/it/10 Op-tional[[][]str[][]] Underfull \hbox (badness 10000) in paragraph at lines 1320--1320 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lat-i- Underfull \hbox (badness 10000) in paragraph at lines 1320--1320 \T1/ptm/m/it/10 tude_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1320--1320 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 lat\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lon-gi- Underfull \hbox (badness 10000) in paragraph at lines 1320--1320 \T1/ptm/m/it/10 tude_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1320--1320 \T1/ptm/m/it/10 tion_column_name: [16] Overfull \hbox (54.94496pt too wide) in paragraph at lines 1335--1336 []\T1/pcr/b/n/10 apply. If not specified, we use the DefaultWorldBankEquilibriu mConcern Underfull \hbox (badness 10000) in paragraph at lines 1383--1383 []\T1/ptm/m/it/10 population_input_file: Underfull \hbox (badness 10000) in paragraph at lines 1383--1383 [][]\T1/ptm/m/it/10 str[][]\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-mo-graph- Underfull \hbox (badness 7851) in paragraph at lines 1383--1383 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 con-cerns: Op- Overfull \hbox (349.54115pt too wide) in paragraph at lines 1383--1383 \T1/ptm/m/it/10 tional[Union[emod_api.dtk_tools.demographics.DemographicsGenera torConcern.DemographicsGeneratorConcern, Overfull \hbox (321.49101pt too wide) in paragraph at lines 1383--1383 \T1/ptm/m/it/10 List[emod_api.dtk_tools.demographics.DemographicsGeneratorConce rn.DemographicsGeneratorConcern]]] Underfull \hbox (badness 10000) in paragraph at lines 1383--1383 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1383--1383 \T1/ptm/m/it/10 res_in_arcsec=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 custom\TS1/ptm/ m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (0.83415pt too wide) in paragraph at lines 1383--1383 \T1/ptm/m/it/10 node_id_from_lat_long=True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1383--1383 \T1/ptm/m/it/10 de-fault_population: Underfull \hbox (badness 10000) in paragraph at lines 1383--1383 [][]\T1/ptm/m/it/10 int[][] = 1000\T1/ptm/m/n/10 , Overfull \hbox (49.21327pt too wide) in paragraph at lines 1383--1383 \T1/ptm/m/it/10 load_other_columns_as_attributes=False\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1383--1383 \T1/ptm/m/it/10 in-clude_columns: Op- Underfull \hbox (badness 10000) in paragraph at lines 1383--1383 \T1/ptm/m/it/10 tional[List[[][]str[][]]] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1383--1383 \T1/ptm/m/it/10 ex-clude_columns: Op- Underfull \hbox (badness 10000) in paragraph at lines 1383--1383 \T1/ptm/m/it/10 tional[List[[][]str[][]]] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1383--1383 \T1/ptm/m/it/10 nodeid_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1383--1383 \T1/ptm/m/it/10 Op-tional[[][]str[][]] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1383--1383 \T1/ptm/m/it/10 lat-i-tude_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1383--1383 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 lat\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lon-gi- Underfull \hbox (badness 10000) in paragraph at lines 1383--1383 \T1/ptm/m/it/10 tude_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1383--1383 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 lon\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pop-u-la- Underfull \hbox (badness 6236) in paragraph at lines 1383--1383 \T1/ptm/m/it/10 tion_column_name: [][]str[][] = [17] Overfull \hbox (54.94496pt too wide) in paragraph at lines 1398--1399 []\T1/pcr/b/n/10 apply. If not specified, we use the DefaultWorldBankEquilibriu mConcern [18] Overfull \hbox (6.3048pt too wide) in paragraph at lines 1454--1454 []\T1/ptm/m/it/10 lat\T1/ptm/m/n/10 , Overfull \hbox (13.5249pt too wide) in paragraph at lines 1454--1454 \T1/ptm/m/it/10 long\T1/ptm/m/n/10 , Overfull \hbox (115.34473pt too wide) in paragraph at lines 1454--1454 \T1/ptm/m/it/10 res=0.008333333333333333\T1/pcr/m/n/10 ) Overfull \hbox (37.09444pt too wide) in paragraph at lines 1460--1460 []\T1/ptm/m/it/10 nodelist\T1/pcr/m/n/10 ) Overfull \hbox (11.74474pt too wide) in paragraph at lines 1466--1466 []\T1/ptm/m/it/10 node_info\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1466--1466 \T1/ptm/m/it/10 De- Underfull \hbox (badness 10000) in paragraph at lines 1466--1466 \T1/ptm/m/it/10 moDf\T1/ptm/m/n/10 , Overfull \hbox (91.34473pt too wide) in paragraph at lines 1466--1466 \T1/ptm/m/it/10 res=0.008333333333333333\T1/pcr/m/n/10 ) Overfull \hbox (71.74474pt too wide) in paragraph at lines 1472--1472 []\T1/ptm/m/it/10 node_info\T1/ptm/m/n/10 , Overfull \hbox (41.2549pt too wide) in paragraph at lines 1472--1472 \T1/ptm/m/it/10 ex- Overfull \hbox (118.90427pt too wide) in paragraph at lines 1472--1472 \T1/ptm/m/it/10 tra_data_columns=[]\T1/ptm/m/n/10 , Overfull \hbox (151.34473pt too wide) in paragraph at lines 1472--1472 \T1/ptm/m/it/10 res=0.008333333333333333\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1512--1514 []\T1/ptm/m/n/10 json ob-ject aka python dict that can be di-rectly passed to D e-mo-graph- Underfull \hbox (badness 10000) in paragraph at lines 1525--1525 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1525--1525 \T1/ptm/m/it/10 mean=0.0\T1/ptm/m/n/10 , [19] Underfull \hbox (badness 10000) in paragraph at lines 1537--1539 []\T1/ptm/m/n/10 json ob-ject aka python dict that can be di-rectly passed to D e-mo-graph- Underfull \hbox (badness 10000) in paragraph at lines 1550--1550 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1556--1558 []\T1/ptm/m/n/10 json ob-ject aka python dict that can be di-rectly passed to D e-mo-graph- Underfull \hbox (badness 10000) in paragraph at lines 1588--1588 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , \T1/ptm/m/it/10 low_prev\T1/ptm/m/n/10 , Underfull \hbox (badness 5091) in paragraph at lines 1588--1588 \T1/ptm/m/it/10 high_prev\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-scrip- Overfull \hbox (22.30493pt too wide) in paragraph at lines 1600--1600 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Overfull \hbox (7.6847pt too wide) in paragraph at lines 1600--1600 \T1/ptm/m/it/10 set- Overfull \hbox (34.0548pt too wide) in paragraph at lines 1600--1600 \T1/ptm/m/it/10 ting=1.0\T1/pcr/m/n/10 ) Overfull \hbox (10.30493pt too wide) in paragraph at lines 1606--1606 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1606--1606 \T1/ptm/m/it/10 pro- Overfull \hbox (58.54413pt too wide) in paragraph at lines 1606--1606 \T1/ptm/m/it/10 tected_setting=0.0\T1/ptm/m/n/10 , Overfull \hbox (9.20457pt too wide) in paragraph at lines 1606--1606 \T1/ptm/m/it/10 thresh- Overfull \hbox (53.51486pt too wide) in paragraph at lines 1606--1606 \T1/ptm/m/it/10 old_age=1825.0\T1/pcr/m/n/10 ) Overfull \hbox (46.30493pt too wide) in paragraph at lines 1612--1612 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Overfull \hbox (42.23488pt too wide) in paragraph at lines 1612--1612 \T1/ptm/m/it/10 mean- Overfull \hbox (44.91478pt too wide) in paragraph at lines 1612--1612 \T1/ptm/m/it/10 AgeAt- Overfull \hbox (28.90492pt too wide) in paragraph at lines 1612--1612 \T1/ptm/m/it/10 In- Overfull \hbox (32.23474pt too wide) in paragraph at lines 1612--1612 \T1/ptm/m/it/10 fec- Overfull \hbox (58.0548pt too wide) in paragraph at lines 1612--1612 \T1/ptm/m/it/10 tion=2.5\T1/pcr/m/n/10 ) Overfull \hbox (55.80493pt too wide) in paragraph at lines 1618--1618 []\T1/ptm/m/it/10 demog\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1624--1624 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1624--1624 \T1/ptm/m/it/10 age_bins\T1/ptm/m/n/10 , [20] Overfull \hbox (25.80493pt too wide) in paragraph at lines 1646--1646 []\T1/ptm/m/it/10 demog\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1664--1665 []\T1/pcr/b/n/10 "15-19", etc. up to "45-49", and a column named "Years" with LaTeX Warning: Hyper reference `emod_api.demographics.PropertiesAndAttributes:e mod_api.demographics.PropertiesAndAttributes.IndividualAttributes' on page 21 u ndefined on input line 1696. LaTeX Warning: Hyper reference `emod_api.demographics.PropertiesAndAttributes:e mod_api.demographics.PropertiesAndAttributes.IndividualProperties' on page 21 u ndefined on input line 1696. LaTeX Warning: Hyper reference `emod_api.demographics.PropertiesAndAttributes:e mod_api.demographics.PropertiesAndAttributes.NodeAttributes' on page 21 undefin ed on input line 1696. Overfull \hbox (64.51184pt too wide) in paragraph at lines 1696--1696 \T1/ptm/m/n/10 emod_api.demographics.PropertiesAndAttributes.IndividualAttribut es Underfull \hbox (badness 10000) in paragraph at lines 1696--1696 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in-di-vid-ual_properties : Overfull \hbox (65.26187pt too wide) in paragraph at lines 1696--1696 \T1/ptm/m/n/10 emod_api.demographics.PropertiesAndAttributes.IndividualProperti es Underfull \hbox (badness 10000) in paragraph at lines 1696--1696 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 node_attributes: Overfull \hbox (45.31218pt too wide) in paragraph at lines 1696--1696 \T1/ptm/m/n/10 emod_api.demographics.PropertiesAndAttributes.NodeAttributes LaTeX Warning: Hyper reference `emod_api.demographics.Updateable:emod_api.demog raphics.Updateable.Updateable' on page 21 undefined on input line 1697. LaTeX Warning: Hyper reference `emod_api.demographics.Node:emod_api.demographic s.Node.Node' on page 21 undefined on input line 1775. [21] Overfull \hbox (22.9045pt too wide) in paragraph at lines 1790--1790 []\T1/ptm/m/it/10 nodeid\T1/ptm/m/n/10 , \T1/ptm/m/it/10 res_in_deg=0.041666666 666666664\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1796--1796 []\T1/ptm/m/it/10 lat\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lon\T1/ptm/m/n/10 , Overfull \hbox (9.16464pt too wide) in paragraph at lines 1796--1796 \T1/ptm/m/it/10 res_in_deg=0.041666666666666664\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1802--1802 []\T1/ptm/m/it/10 lat\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lon\T1/ptm/m/n/10 , Overfull \hbox (59.95372pt too wide) in paragraph at lines 1826--1826 []\T1/ptm/m/it/10 initial_distribution: Overfull \hbox (21.8143pt too wide) in paragraph at lines 1826--1826 \T1/ptm/m/it/10 List[[][]float[][]] Underfull \hbox (badness 10000) in paragraph at lines 1826--1826 \T1/ptm/m/it/10 = Overfull \hbox (4.85487pt too wide) in paragraph at lines 1826--1826 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (3.0149pt too wide) in paragraph at lines 1826--1826 \T1/ptm/m/it/10 prop- Overfull \hbox (27.15454pt too wide) in paragraph at lines 1826--1826 \T1/ptm/m/it/10 erty=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1826--1826 \T1/ptm/m/it/10 val- Underfull \hbox (badness 10000) in paragraph at lines 1826--1826 \T1/ptm/m/it/10 ues: Overfull \hbox (21.8143pt too wide) in paragraph at lines 1826--1826 \T1/ptm/m/it/10 List[[][]float[][]] Underfull \hbox (badness 10000) in paragraph at lines 1826--1826 \T1/ptm/m/it/10 = Overfull \hbox (4.85487pt too wide) in paragraph at lines 1826--1826 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (1.09485pt too wide) in paragraph at lines 1826--1826 \T1/ptm/m/it/10 tran- Underfull \hbox (badness 10000) in paragraph at lines 1826--1826 \T1/ptm/m/it/10 si- Overfull \hbox (4.02464pt too wide) in paragraph at lines 1826--1826 \T1/ptm/m/it/10 tions: Overfull \hbox (21.8143pt too wide) in paragraph at lines 1826--1826 \T1/ptm/m/it/10 List[[][]float[][]] Underfull \hbox (badness 10000) in paragraph at lines 1826--1826 \T1/ptm/m/it/10 = Overfull \hbox (4.85487pt too wide) in paragraph at lines 1826--1826 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (4.98474pt too wide) in paragraph at lines 1826--1826 \T1/ptm/m/it/10 trans- Underfull \hbox (badness 10000) in paragraph at lines 1826--1826 \T1/ptm/m/it/10 mis- Overfull \hbox (32.35434pt too wide) in paragraph at lines 1826--1826 \T1/ptm/m/it/10 sion_matrix: Overfull \hbox (21.8143pt too wide) in paragraph at lines 1826--1826 \T1/ptm/m/it/10 List[[][]float[][]] Underfull \hbox (badness 10000) in paragraph at lines 1826--1826 \T1/ptm/m/it/10 = Overfull \hbox (8.35487pt too wide) in paragraph at lines 1826--1826 \T1/ptm/m/it/10 None\T1/pcr/m/n/10 ) LaTeX Warning: Hyper reference `emod_api.demographics.Updateable:emod_api.demog raphics.Updateable.Updateable' on page 22 undefined on input line 1827. LaTeX Warning: Hyper reference `emod_api.demographics.PropertiesAndAttributes:e mod_api.demographics.PropertiesAndAttributes.IndividualProperty' on page 22 und efined on input line 1840. Overfull \hbox (76.12407pt too wide) in paragraph at lines 1840--1840 []\T1/ptm/m/it/10 individual_property: Overfull \hbox (269.15215pt too wide) in paragraph at lines 1840--1840 \T1/ptm/m/n/10 emod_api.demographics.PropertiesAndAttributes.IndividualProperty Underfull \hbox (badness 10000) in paragraph at lines 1840--1840 \T1/ptm/m/it/10 = Overfull \hbox (20.35487pt too wide) in paragraph at lines 1840--1840 \T1/ptm/m/it/10 None\T1/pcr/m/n/10 ) LaTeX Warning: Hyper reference `emod_api.demographics.Updateable:emod_api.demog raphics.Updateable.Updateable' on page 22 undefined on input line 1841. [22] Overfull \hbox (109.22414pt too wide) in paragraph at lines 1871--1871 []\T1/ptm/m/it/10 age_distribution_flag=None\T1/ptm/m/n/10 , Overfull \hbox (94.32413pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 age_distribution1=None\T1/ptm/m/n/10 , Overfull \hbox (94.32413pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 age_distribution2=None\T1/ptm/m/n/10 , Overfull \hbox (89.32413pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 age_distribution=None\T1/ptm/m/n/10 , Overfull \hbox (18.82483pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 preva- Overfull \hbox (116.0839pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 lence_distribution_flag=None\T1/ptm/m/n/10 , Overfull \hbox (18.82483pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 preva- Overfull \hbox (101.18388pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 lence_distribution1=None\T1/ptm/m/n/10 , Overfull \hbox (18.82483pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 preva- Overfull \hbox (101.18388pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 lence_distribution2=None\T1/ptm/m/n/10 , Overfull \hbox (6.57483pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 im- Overfull \hbox (8.79494pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 mu- Overfull \hbox (109.9839pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 nity_distribution_flag=None\T1/ptm/m/n/10 , Overfull \hbox (6.57483pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 im- Overfull \hbox (8.79494pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 mu- Overfull \hbox (95.0839pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 nity_distribution1=None\T1/ptm/m/n/10 , Overfull \hbox (6.57483pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 im- Overfull \hbox (8.79494pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 mu- Overfull \hbox (95.0839pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 nity_distribution2=None\T1/ptm/m/n/10 , Overfull \hbox (109.9838pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 risk_distribution_flag=None\T1/ptm/m/n/10 , Overfull \hbox (95.08379pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 risk_distribution1=None\T1/ptm/m/n/10 , Overfull \hbox (95.08379pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 risk_distribution2=None\T1/ptm/m/n/10 , Overfull \hbox (6.57483pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 mi- Overfull \hbox (10.31496pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 gra- Overfull \hbox (169.32329pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 tion_heterogeneity_distribution_flag=None\T1/ptm/m/n/10 , Overfull \hbox (6.57483pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 mi- Overfull \hbox (10.31496pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 gra- Overfull \hbox (154.42328pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 tion_heterogeneity_distribution1=None\T1/ptm/m/n/10 , Overfull \hbox (6.57483pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 mi- Overfull \hbox (10.31496pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 gra- Overfull \hbox (154.42328pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 tion_heterogeneity_distribution2=None\T1/ptm/m/n/10 , Overfull \hbox (12.48488pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 mor- Overfull \hbox (7.13475pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 tal- Overfull \hbox (85.0839pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 ity_distribution=None\T1/ptm/m/n/10 , Overfull \hbox (9.35475pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 sus- Overfull \hbox (10.45485pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 cep- Overfull \hbox (2.13475pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 ti- Overfull \hbox (7.13475pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 bil- Overfull \hbox (88.5839pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 ity_distribution=None\T1/pcr/m/n/10 ) LaTeX Warning: Hyper reference `emod_api.demographics.Updateable:emod_api.demog raphics.Updateable.Updateable' on page 23 undefined on input line 1872. Underfull \hbox (badness 10000) in paragraph at lines 1876--1876 []\T1/ptm/m/it/10 distribution_values: List[[][]float[][]] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- LaTeX Warning: Hyper reference `emod_api.demographics.Updateable:emod_api.demog raphics.Updateable.Updateable' on page 23 undefined on input line 1877. Underfull \hbox (badness 10000) in paragraph at lines 1890--1890 []\T1/ptm/m/it/10 distribution_values=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-s ult_scale_factor=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- LaTeX Warning: Hyper reference `emod_api.demographics.Updateable:emod_api.demog raphics.Updateable.Updateable' on page 23 undefined on input line 1891. [23] Underfull \hbox (badness 10000) in paragraph at lines 1910--1910 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 axis_units=None\T1/ptm/m /n/10 , \T1/ptm/m/it/10 num_distribution_axes=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1910--1910 \T1/ptm/m/it/10 pop-u-la-tion_groups=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-su lt_scale_factor=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- LaTeX Warning: Hyper reference `emod_api.demographics.Updateable:emod_api.demog raphics.Updateable.Updateable' on page 24 undefined on input line 1911. Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 []\T1/ptm/m/it/10 airport: Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 [][]\T1/ptm/m/it/10 int[][] = Overfull \hbox (4.8247pt too wide) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 tude=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Overfull \hbox (0.98447pt too wide) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 birth_rate: Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 [][]\T1/ptm/m/it/10 float[][] = Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 coun- Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 try=None\T1/ptm/m/n/10 , Overfull \hbox (9.42453pt too wide) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 growth_rate: Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 [][]\T1/ptm/m/it/10 float[][] = Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 lat-i-tude: Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 [][]\T1/ptm/m/it/10 float[][] = Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 lon-gi-tude: Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 [][]\T1/ptm/m/it/10 float[][] = Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 meta-data: Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 [][]\T1/ptm/m/it/10 dict[][] = Overfull \hbox (22.25432pt too wide) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 tial_population: Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 [][]\T1/ptm/m/it/10 int[][] = Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 sea-port: Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 [][]\T1/ptm/m/it/10 int[][] = Overfull \hbox (50.58374pt too wide) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 val_habitat_multiplier: Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 List[[][]float[][]] Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 ini- Overfull \hbox (86.9334pt too wide) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 tial_vectors_per_species=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 in-fec-tiv- Overfull \hbox (15.02396pt too wide) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 ity_multiplier: Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 [][]\T1/ptm/m/it/10 float[][] = Overfull \hbox (15.23419pt too wide) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 tra_attributes: Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 [][]\T1/ptm/m/it/10 dict[][] = LaTeX Warning: Hyper reference `emod_api.demographics.Updateable:emod_api.demog raphics.Updateable.Updateable' on page 24 undefined on input line 1946. [24] [25] Underfull \hbox (badness 10000) in paragraph at lines 2016--2017 []\T1/pcr/b/n/10 distribution \T1/ptm/m/n/10 ^^U The se-lected dis-tri-bu-tion (need to come from Underfull \hbox (badness 10000) in paragraph at lines 2036--2036 []\T1/ptm/m/it/10 filename\T1/ptm/m/n/10 , \T1/ptm/m/it/10 dis-tri-bu-tion\T1/p tm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2037--2038 \T1/ptm/m/n/10 Set the \T1/pcr/m/n/10 ImmunityDistributionFlag\T1/ptm/m/n/10 , \T1/pcr/m/n/10 ImmunityDistribution1 \T1/ptm/m/n/10 and Underfull \hbox (badness 10000) in paragraph at lines 2064--2064 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2064--2064 \T1/ptm/m/it/10 fn\T1/ptm/m/n/10 , [26] Underfull \hbox (badness 10000) in paragraph at lines 2134--2134 []\T1/ptm/m/it/10 cb\T1/ptm/m/n/10 , Overfull \hbox (28.70406pt too wide) in paragraph at lines 2134--2134 \T1/ptm/m/it/10 use_existing=False\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 2160--2160 []\T1/ptm/m/it/10 cb\T1/ptm/m/n/10 , Overfull \hbox (34.70406pt too wide) in paragraph at lines 2160--2160 \T1/ptm/m/it/10 use_existing=False\T1/pcr/m/n/10 ) LaTeX Warning: Hyper reference `emod_api.demographics.demographics_utils:emod_a pi.demographics.demographics_utils.set_static_demographics' on page 27 undefine d on input line 2161. [27] Underfull \hbox (badness 10000) in paragraph at lines 2232--2232 []\T1/ptm/m/it/10 point\T1/ptm/m/n/10 , Overfull \hbox (37.41425pt too wide) in paragraph at lines 2232--2232 \T1/ptm/m/it/10 grid_id_2_cell_id\T1/ptm/m/n/10 , LaTeX Warning: Hyper reference `emod_api.schema_to_class:emod_api.schema_to_cla ss.ReadOnlyDict' on page 28 undefined on input line 2264. Underfull \hbox (badness 10000) in paragraph at lines 2273--2273 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Event_Trigger\T1/ptm/m/n /10 , Overfull \hbox (73.22345pt too wide) in paragraph at lines 2273--2273 \T1/ptm/m/it/10 Node_Selection_Type=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 DISTANCE_ ONLY\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (57.50374pt too wide) in paragraph at lines 2273--2273 \T1/ptm/m/it/10 Max_Distance_To_Other_Nodes_Km=- [28] LaTeX Warning: Hyper reference `emod_api.schema_to_class:emod_api.schema_to_cla ss.ReadOnlyDict' on page 29 undefined on input line 2299. 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Underfull \hbox (badness 10000) in paragraph at lines 2372--2372 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Event_Or_Config=\TS1/ptm /m/it/10 '\T1/ptm/m/it/10 Event\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/ 10 Con-fig=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2372--2372 \T1/ptm/m/it/10 Event=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 NoTrigger\TS1/ptm/m/it/ 10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Ten-dency=1.0\T1/ptm/m/n/10 , \T1/ptm/m/it /10 Sin-gle_Use=True\T1/ptm/m/n/10 , [29] LaTeX Warning: Hyper reference `emod_api.schema_to_class:emod_api.schema_to_cla ss.ReadOnlyDict' on page 30 undefined on input line 2407. Underfull \hbox (badness 10000) in paragraph at lines 2416--2416 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Trig-gers\T1/ptm/m/n/10 , \T1/ptm/m/it/10 In-ter-ven-tions\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Prop- Underfull \hbox (badness 10000) in paragraph at lines 2416--2416 \T1/ptm/m/it/10 erty_Restrictions=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 De-mo- Underfull \hbox (badness 10000) in paragraph at lines 2416--2416 \T1/ptm/m/it/10 graphic_Coverage=1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar-get_Ag e_Min=0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar- Underfull \hbox (badness 10000) in paragraph at lines 2416--2416 \T1/ptm/m/it/10 get_Age_Max=45625\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar-get_Gende r=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 All\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/p tm/m/it/10 Tar- Underfull \hbox (badness 10000) in paragraph at lines 2416--2416 \T1/ptm/m/it/10 get_Residents_Only=1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Duration=- 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Black- Underfull \hbox (badness 10000) in paragraph at lines 2416--2416 \T1/ptm/m/it/10 out_Event_Trigger=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Black-ou t_Period=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2416--2416 \T1/ptm/m/it/10 Black-out_On_First_Occurrence=None\T1/ptm/m/n/10 , \T1/ptm/m/it /10 Dis-qual-i-fy- LaTeX Warning: Hyper reference `emod_api.schema_to_class:emod_api.schema_to_cla ss.ReadOnlyDict' on page 30 undefined on input line 2469. Underfull \hbox (badness 10000) in paragraph at lines 2478--2478 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar-get_Property_Key\T1/ ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2478--2478 \T1/ptm/m/it/10 Tar-get_Property_Value\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2478--2478 \T1/ptm/m/it/10 Daily_Probability=1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Max- Underfull \hbox (badness 10000) in paragraph at lines 2478--2478 \T1/ptm/m/it/10 i-mum_Duration=1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Revert=- Underfull \hbox (badness 10000) in paragraph at lines 2478--2478 \T1/ptm/m/it/10 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 In-ter-ven-tion_Name=\TS1/ptm /m/it/10 ''\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2478--2478 \T1/ptm/m/it/10 Event_Trigger_Distributed=\TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , [30] Underfull \hbox (badness 10000) in paragraph at lines 2486--2487 []\T1/pcr/b/n/10 The key part of the new key-value pair of the IP. Underfull \hbox (badness 10000) in paragraph at lines 2489--2490 []\T1/pcr/b/n/10 The value part of the new key-value pair of the IP. Underfull \hbox (badness 10000) in paragraph at lines 2495--2496 []\T1/pcr/b/n/10 The daily probability that an individual will move to the Underfull \hbox (badness 10000) in paragraph at lines 2498--2499 []\T1/pcr/b/n/10 The maximum amount of time individuals have to move Underfull \hbox (badness 10000) in paragraph at lines 2498--2499 \T1/pcr/b/n/10 to a new group. This timing works in conjunction with Underfull \hbox (badness 10000) in paragraph at lines 2501--2502 []\T1/pcr/b/n/10 The number of days before an individual moves back to their Underfull \hbox (badness 10000) in paragraph at lines 2504--2505 []\T1/pcr/b/n/10 Optional Intervention_Name. Useful if managing a replacement Underfull \hbox (badness 10000) in paragraph at lines 2507--2508 []\T1/pcr/b/n/10 Optional broadcast trigger to be published when PVC is Underfull \hbox (badness 10000) in paragraph at lines 2510--2511 []\T1/pcr/b/n/10 Optional broadcast trigger to be published when PVC is LaTeX Warning: Hyper reference `emod_api.schema_to_class:emod_api.schema_to_cla ss.ReadOnlyDict' on page 31 undefined on input line 2519. Underfull \hbox (badness 10000) in paragraph at lines 2528--2528 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Start_Day: [][]int[][]\T 1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2528--2528 \T1/ptm/m/it/10 Node_Ids=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Node- Underfull \hbox (badness 10000) in paragraph at lines 2528--2528 \T1/ptm/m/it/10 set_Config=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Num- Underfull \hbox (badness 10000) in paragraph at lines 2528--2528 \T1/ptm/m/it/10 ber_Repetitions: [][]int[][] = 1\T1/ptm/m/n/10 , Overfull \hbox (4.90335pt too wide) in paragraph at lines 2528--2528 \T1/ptm/m/it/10 Timesteps_Between_Repetitions: Underfull \hbox (badness 10000) in paragraph at lines 2528--2528 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Sched-uled_Campaign_Event\TS1/ptm/m/it/10 '\T 1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2528--2528 \T1/ptm/m/it/10 Prop-erty_Restrictions=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2528--2528 \T1/ptm/m/it/10 = 1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar-get_Age_Min=0\T1/ptm/ m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2528--2528 \T1/ptm/m/it/10 Tar-get_Age_Max=45625\T1/ptm/m/n/10 , [31] LaTeX Warning: Hyper reference `emod_api.schema_to_class:emod_api.schema_to_cla ss.ReadOnlyDict' on page 32 undefined on input line 2586. Underfull \hbox (badness 10000) in paragraph at lines 2595--2595 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Start_Day: [][]int[][]\T 1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2595--2595 \T1/ptm/m/it/10 List[[][]str[][]]\T1/ptm/m/n/10 , \T1/ptm/m/it/10 In-ter-ven-ti on_List: Underfull \hbox (badness 10000) in paragraph at lines 2595--2595 \T1/ptm/m/it/10 List[[][]dict[][]]\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Node_Ids=Non e\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2595--2595 \T1/ptm/m/it/10 Node-set_Config=None\T1/ptm/m/n/10 , Overfull \hbox (17.59343pt too wide) in paragraph at lines 2595--2595 \T1/ptm/m/it/10 Node_Property_Restrictions=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2595--2595 \T1/ptm/m/it/10 Prop-erty_Restrictions=None\T1/ptm/m/n/10 , Overfull \hbox (4.90335pt too wide) in paragraph at lines 2595--2595 \T1/ptm/m/it/10 Timesteps_Between_Repetitions: Underfull \hbox (badness 10000) in paragraph at lines 2595--2595 [][]\T1/ptm/m/it/10 int[][] = - 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 De-mo- Underfull \hbox (badness 10000) in paragraph at lines 2595--2595 \T1/ptm/m/it/10 graphic_Coverage: [][]float[][] Underfull \hbox (badness 10000) in paragraph at lines 2595--2595 \T1/ptm/m/it/10 = 1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar-get_Age_Min=0\T1/ptm/ m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2595--2595 \T1/ptm/m/it/10 Tar-get_Age_Max=45625\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2595--2595 \T1/ptm/m/it/10 Tar-get_Residents_Only=1\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2595--2595 \T1/ptm/m/it/10 Duration=- 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Black- Underfull \hbox (badness 10000) in paragraph at lines 2595--2595 \T1/ptm/m/it/10 Black-out_Period=0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Black- Underfull \hbox (badness 10000) in paragraph at lines 2595--2595 \T1/ptm/m/it/10 out_On_First_Occurrence=0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2595--2595 \T1/ptm/m/it/10 Dis-qual-i-fy- Underfull \hbox (badness 10000) in paragraph at lines 2595--2595 \T1/ptm/m/it/10 ing_Properties=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 De- [32] LaTeX Warning: Hyper reference `emod_api.schema_to_class:emod_api.schema_to_cla ss.ReadOnlyDict' on page 33 undefined on input line 2674. Underfull \hbox (badness 6078) in paragraph at lines 2683--2683 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Base_Sensitivity: [][]fl oat[][] = Underfull \hbox (badness 10000) in paragraph at lines 2683--2683 \T1/ptm/m/it/10 Event_Trigger_Distributed: [][]str[][] Underfull \hbox (badness 10000) in paragraph at lines 2683--2683 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Event_Trigger_Expired: Underfull \hbox (badness 10000) in paragraph at lines 2683--2683 [][]\T1/ptm/m/it/10 str[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Pos-i- Underfull \hbox (badness 10000) in paragraph at lines 2683--2683 \T1/ptm/m/it/10 tive_Diagnosis_Intervention=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2683--2683 \T1/ptm/m/it/10 Pos-i-tive_Diagnosis_Event: Underfull \hbox (badness 10000) in paragraph at lines 2683--2683 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Pos-i-tiveRe-su lt\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Neg-a- Underfull \hbox (badness 10000) in paragraph at lines 2683--2683 \T1/ptm/m/it/10 tive_Diagnosis_Intervention=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2683--2683 \T1/ptm/m/it/10 Neg-a-tive_Diagnosis_Event: Underfull \hbox (badness 10000) in paragraph at lines 2683--2683 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Neg-a-tiveRe-su lt\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Treat- [33] LaTeX Warning: Hyper reference `emod_api.schema_to_class:emod_api.schema_to_cla ss.ReadOnlyDict' on page 34 undefined on input line 2728. Underfull \hbox (badness 10000) in paragraph at lines 2737--2737 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2737--2737 \T1/ptm/m/it/10 trig-ger\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-lay\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2737--2737 \T1/ptm/m/it/10 in-ter-ven-tion\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2737--2737 \T1/ptm/m/it/10 ip_targeting=[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2751--2752 []\T1/pcr/b/n/10 without the distribution, which is inferred. E.g., { Underfull \hbox (badness 10000) in paragraph at lines 2774--2774 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2774--2774 \T1/ptm/m/it/10 new_ip_key\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2774--2774 \T1/ptm/m/it/10 new_ip_value\T1/ptm/m/n/10 , Overfull \hbox (25.72469pt too wide) in paragraph at lines 2774--2774 \T1/ptm/m/it/10 change_age_in_days\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2774--2774 \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 2774--2774 \T1/ptm/m/it/10 vert_in_days\T1/ptm/m/n/10 , Overfull \hbox (8.6443pt too wide) in paragraph at lines 2774--2774 \T1/ptm/m/it/10 ip_targeting_key\T1/ptm/m/n/10 , Overfull \hbox (17.38419pt too wide) in paragraph at lines 2774--2774 \T1/ptm/m/it/10 ip_targeting_value\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2774--2774 \T1/ptm/m/it/10 cov-er- [34] Underfull \hbox (badness 10000) in paragraph at lines 2833--2833 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 nodeto\T1/ptm/m/n/10 , \ T1/ptm/m/it/10 start_day: Underfull \hbox (badness 8056) in paragraph at lines 2833--2833 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age: [][ ]float[][] Underfull \hbox (badness 7851) in paragraph at lines 2833--2833 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar-get_age: [][]dict[][ ] Underfull \hbox (badness 10000) in paragraph at lines 2833--2833 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 nodes_from_ids: Underfull \hbox (badness 10000) in paragraph at lines 2833--2833 \T1/ptm/m/it/10 List[[][]int[][]] = None\T1/ptm/m/n/10 , Overfull \hbox (5.56337pt too wide) in paragraph at lines 2833--2833 \T1/ptm/m/it/10 ind_property_restrictions=None\T1/ptm/m/n/10 , Overfull \hbox (12.22342pt too wide) in paragraph at lines 2833--2833 \T1/ptm/m/it/10 node_property_restrictions=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2833--2833 \T1/ptm/m/it/10 trig-gered_campaign_delay=0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2833--2833 \T1/ptm/m/it/10 trig-ger_condition_list=None\T1/ptm/m/n/10 , [35] Underfull \hbox (badness 10000) in paragraph at lines 2862--2866 []\T1/ptm/m/n/10 {^^PDuration_Before_Leaving_Distribution^^Q:^^QGAUSSIAN_DISTRI BUTION^^Q, Underfull \hbox (badness 10000) in paragraph at lines 2862--2866 \T1/ptm/m/n/10 ^^PDu-ra-tion_Before_Leaving_Gaussian_Mean^^Q: 14, ^^PDu- Underfull \hbox (badness 10000) in paragraph at lines 2862--2866 \T1/ptm/m/n/10 ra-tion_Before_Leaving_Gaussian_Std_Dev^^Q 3} {^^PDu-ra- Underfull \hbox (badness 10000) in paragraph at lines 2862--2866 \T1/ptm/m/n/10 tion_Before_Leaving_Distribution^^Q:^^QPOISSON_DISTRIBUTION^^Q, ^^PDu-ra- Underfull \hbox (badness 10000) in paragraph at lines 2875--2878 []\T1/ptm/m/n/10 {^^PDuration_At_Node_Distribution^^Q:^^QGAUSSIAN_DISTRIBUTION^ ^Q, ^^PDu-ra- Underfull \hbox (badness 10000) in paragraph at lines 2875--2878 \T1/ptm/m/n/10 tion_At_Node_Gaussian_Mean^^Q: 14, ^^PDu-ra-tion_At_Node_Gaussia n_Std_Dev^^Q Underfull \hbox (badness 10000) in paragraph at lines 2875--2878 \T1/ptm/m/n/10 3} {^^PDu-ra-tion_At_Node_Distribution^^Q:^^QPOISSON_DISTRIBUTIO N^^Q, ^^PDu-ra- Overfull \hbox (19.69089pt too wide) in paragraph at lines 2922--2926 \T1/ptm/m/n/10 from emod_api im-port cam-paign as camp dan = {^^PDu-ra-tion_At_ Node_Distribution^^Q:^^QPOISSON_DISTRIBUTION^^Q, Overfull \hbox (57.24088pt too wide) in paragraph at lines 2922--2926 \T1/ptm/m/n/10 ^^PDu-ra-tion_At_Node_Poisson_Mean^^Q 30} dbl = {^^PDu-ra-tion_B efore_Leaving_Distribution^^Q:^^QGAUSSIAN_DISTRIBUTION^^Q, Underfull \hbox (badness 10000) in paragraph at lines 2927--2932 [] [36] Underfull \hbox (badness 10000) in paragraph at lines 2943--2943 \T1/ptm/m/it/10 pro-file=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 CONST\TS1/ptm/m/it/1 0 '\T1/ptm/m/n/10 , ! LaTeX Error: Too deeply nested. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.2952 ...{CONST(ANT)}] \leavevmode\begin{itemize} Underfull \hbox (badness 10000) in paragraph at lines 3014--3014 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day=1\T1/ptm/m/n/1 0 , Underfull \hbox (badness 10000) in paragraph at lines 3014--3014 \T1/ptm/m/it/10 new_infectivity=1.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3014--3014 \T1/ptm/m/it/10 pro-file=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 CONST\TS1/ptm/m/it/1 0 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3014--3014 \T1/ptm/m/it/10 node_ids=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3014--3014 \T1/ptm/m/it/10 re-cur-ring=True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3022--3022 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3033--3033 \T1/ptm/m/it/10 age=0.01\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ig-nore_immunity=None\ T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3042--3042 []\T1/ptm/m/it/10 campaign_builder\T1/ptm/m/n/10 , \T1/ptm/m/it/10 timestep\T1/ ptm/m/n/10 , [37] Underfull \hbox (badness 10000) in paragraph at lines 3076--3076 \T1/ptm/m/it/10 ef-fi-cacy=1.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3076--3076 \T1/ptm/m/it/10 sv_name=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Vaccine\TS1/ptm/m/it/ 10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3076--3076 \T1/ptm/m/it/10 wan-ing_duration=100\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3076--3076 \T1/ptm/m/it/10 d_a_d=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3076--3076 \T1/ptm/m/it/10 cost_to_consumer=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3076--3076 \T1/ptm/m/it/10 e_i_r=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in-ter-ven- Underfull \hbox (badness 10000) in paragraph at lines 3097--3097 []\T1/ptm/m/it/10 timestep\T1/ptm/m/n/10 , \T1/ptm/m/it/10 file- Underfull \hbox (badness 10000) in paragraph at lines 3114--3114 []\T1/ptm/m/it/10 schema_path\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ini-tial=1.0\T1/p tm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3114--3114 \T1/ptm/m/it/10 box_duration=365\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de- [38] [39] Underfull \hbox (badness 5548) in paragraph at lines 3221--3224 []\T1/ptm/m/n/10 EMOD/DTK for-mat mi-gra-tion files (and as-so-ci-ated meta-dat a files) can be writ-ten with mi-gra- [40] Underfull \hbox (badness 10000) in paragraph at lines 3487--3487 \T1/ptm/m/it/10 num_nodes=100\T1/ptm/m/n/10 , \T1/ptm/m/it/10 mig_factor=1.0\T1 /ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3487--3487 \T1/ptm/m/it/10 frac_rural=0.3\T1/ptm/m/n/10 , \T1/ptm/m/it/10 id_ref=\TS1/ptm/ m/it/10 '\T1/ptm/m/it/10 from_params\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm/ m/it/10 mi- LaTeX Warning: Hyper reference `emod_api.migration.migration:emod_api.migration .migration.Migration' on page 41 undefined on input line 3498. Overfull \hbox (68.98433pt too wide) in paragraph at lines 3498--3498 []\T1/ptm/m/it/10 demographics_file_path: Underfull \hbox (badness 10000) in paragraph at lines 3498--3498 [][]\T1/ptm/m/it/10 str[][]\T1/ptm/m/n/10 , Overfull \hbox (2.42482pt too wide) in paragraph at lines 3498--3498 \T1/ptm/m/it/10 params: Underfull \hbox (badness 10000) in paragraph at lines 3498--3498 [][]\T1/ptm/m/it/10 str[][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3498--3498 \T1/ptm/m/it/10 id_ref: Underfull \hbox (badness 10000) in paragraph at lines 3498--3498 [][]\T1/ptm/m/it/10 str[][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3498--3498 \T1/ptm/m/it/10 mi-gra- Overfull \hbox (24.21457pt too wide) in paragraph at lines 3498--3498 \T1/ptm/m/it/10 tion_type=1\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 3498--3498 \OMS/cmsy/m/n/10 !$ Overfull \hbox (135.19371pt too wide) in paragraph at lines 3498--3498 \T1/ptm/m/it/10 emod_api.migration.migration.Migration [41] Overfull \hbox (2.15437pt too wide) in paragraph at lines 3526--3526 []\T1/ptm/m/it/10 demographics_file_path\T1/ptm/m/n/10 , Overfull \hbox (24.70302pt too wide) in paragraph at lines 3580--3580 []\T1/ptm/m/it/10 path_to_binary\T1/ptm/m/n/10 , \T1/ptm/m/it/10 path_to_write_ schema=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 schema.json\TS1/ptm/m/it/10 '\T1/pcr/m /n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 3601--3601 []\T1/ptm/m/it/10 input_serpop_path\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3601--3601 \T1/ptm/m/it/10 mod_fn=None\T1/ptm/m/n/10 , [42] Underfull \hbox (badness 10000) in paragraph at lines 3622--3622 []\T1/ptm/m/it/10 file: [43] Underfull \hbox (badness 10000) in paragraph at lines 3748--3748 []\T1/ptm/m/it/10 name: [][]str[][]\T1/ptm/m/n/10 , \T1/ptm/m/it/10 han-dle\T1/ ptm/m/n/10 , \T1/ptm/m/it/10 cur- Underfull \hbox (badness 10000) in paragraph at lines 3783--3783 []\T1/ptm/m/it/10 handle\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cur- [44] LaTeX Warning: Hyper reference `emod_api.serialization.dtkFileSupport:emod_api. serialization.dtkFileSupport.SerialObject' on page 45 undefined on input line 3 884. 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LaTeX Warning: Reference `emod_api.weather:module-emod_api.weather' on page 55 undefined on input line 4730. LaTeX Warning: Reference `emod_api.weather.weather:module-emod_api.weather.weat her' on page 55 undefined on input line 4731. [55] No file institute-for-disease-modeling-emod-api.ind. (./institute-for-disease-modeling-emod-api.aux) Package rerunfilecheck Warning: File `institute-for-disease-modeling-emod-api.o ut' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc}< /usr/share/texlive/texmf-dist/fonts/type1/urw/courier/ucrr8a.pfb>< /usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmri8a.pfb> Output written on institute-for-disease-modeling-emod-api.pdf (59 pages, 261311 bytes). Transcript written on institute-for-disease-modeling-emod-api.log. Latexmk: Index file 'institute-for-disease-modeling-emod-api.idx' was written Latexmk: Missing input file: 'institute-for-disease-modeling-emod-api.ind' from line 'No file institute-for-disease-modeling-emod-api.ind.' Latexmk: References changed. Latexmk: References changed. Latexmk: Log file says output to 'institute-for-disease-modeling-emod-api.pdf' Latexmk: Log file says output to 'institute-for-disease-modeling-emod-api.pdf' Latexmk: List of undefined refs and citations: Reference `emod_api.campaign:module-emod_api.campaign' on page 55 undefined on input line 4680 Reference `emod_api.channelreports.channels:module-emod_api.channelreports.channels' on page 55 undefined on input line 4682 Reference `emod_api.channelreports:module-emod_api.channelreports' on page 55 undefined on input line 4681 Reference `emod_api.config.default_from_schema:module-emod_api.config.default_from_schema' on page 55 undefined on input line 4684 Reference `emod_api.config.default_from_schema_no_validation:module-emod_api.config.default_from_schema_no_validation' on page 55 undefined on input line 4685 Reference `emod_api.config.dtk_post_process_adhocevents:module-emod_api.config.dtk_post_process_adhocevents' on page 55 undefined on input line 4686 Reference `emod_api.config.dtk_pre_process_adhocevents:module-emod_api.config.dtk_pre_process_adhocevents' on page 55 undefined on input line 4687 Reference `emod_api.config.dtk_pre_process_w5ml:module-emod_api.config.dtk_pre_process_w5ml' on page 55 undefined on input line 4688 Reference `emod_api.config.from_overrides:module-emod_api.config.from_overrides' on page 55 undefined on input line 4689 Reference `emod_api.config.from_poi_and_binary:module-emod_api.config.from_poi_and_binary' on page 55 undefined on input line 4690 Reference `emod_api.config.from_schema:module-emod_api.config.from_schema' on page 55 undefined on input line 4691 Reference `emod_api.config.schema_to_config:module-emod_api.config.schema_to_config' on page 55 undefined on input line 4692 Reference `emod_api.config:module-emod_api.config' on page 55 undefined on input line 4683 Reference `emod_api.demographics.BaseInputFile:module-emod_api.demographics.BaseInputFile' on page 55 undefined on input line 4694 Reference `emod_api.demographics.Demographics:module-emod_api.demographics.Demographics' on page 55 undefined on input line 4695 Reference `emod_api.demographics.DemographicsGenerator:module-emod_api.demographics.DemographicsGenerator' on page 55 undefined on input line 4697 Reference `emod_api.demographics.DemographicsInputDataParsers:module-emod_api.demographics.DemographicsInputDataParsers' on page 55 undefined on input line 4698 Reference `emod_api.demographics.DemographicsTemplates:module-emod_api.demographics.DemographicsTemplates' on page 55 undefined on input line 4699 Reference `emod_api.demographics.Node:module-emod_api.demographics.Node' on page 55 undefined on input line 4701 Reference `emod_api.demographics.PreDefinedDistributions:module-emod_api.demographics.PreDefinedDistributions' on page 55 undefined on input line 4702 Reference `emod_api.demographics.PropertiesAndAttributes:module-emod_api.demographics.PropertiesAndAttributes' on page 55 undefined on input line 4703 Reference `emod_api.demographics.Updateable:module-emod_api.demographics.Updateable' on page 55 undefined on input line 4704 Reference `emod_api.demographics.demographics_utils:module-emod_api.demographics.demographics_utils' on page 55 undefined on input line 4696 Reference `emod_api.demographics.grid_construction:module-emod_api.demographics.grid_construction' on page 55 undefined on input line 4700 Reference `emod_api.demographics:module-emod_api.demographics' on page 55 undefined on input line 4693 Reference `emod_api.interventions.common:module-emod_api.interventions.common' on page 55 undefined on input line 4706 Reference `emod_api.interventions.import_pressure:module-emod_api.interventions.import_pressure' on page 55 undefined on input line 4707 Reference `emod_api.interventions.migration:module-emod_api.interventions.migration' on page 55 undefined on input line 4708 Reference `emod_api.interventions.node_multiplier:module-emod_api.interventions.node_multiplier' on page 55 undefined on input line 4709 Reference `emod_api.interventions.outbreak:module-emod_api.interventions.outbreak' on page 55 undefined on input line 4710 Reference `emod_api.interventions.simple_vaccine:module-emod_api.interventions.simple_vaccine' on page 55 undefined on input line 4711 Reference `emod_api.interventions.utils:module-emod_api.interventions.utils' on page 55 undefined on input line 4712 Reference `emod_api.interventions:module-emod_api.interventions' on page 55 undefined on input line 4705 Reference `emod_api.migration.client.client:module-emod_api.migration.client.client' on page 55 undefined on input line 4715 Reference `emod_api.migration.client:module-emod_api.migration.client' on page 55 undefined on input line 4714 Reference `emod_api.migration.migration:module-emod_api.migration.migration' on page 55 undefined on input line 4716 Reference `emod_api.migration:module-emod_api.migration' on page 55 undefined on input line 4713 Reference `emod_api.schema.dtk_post_process_schema:module-emod_api.schema.dtk_post_process_schema' on page 55 undefined on input line 4718 Reference `emod_api.schema.get_schema:module-emod_api.schema.get_schema' on page 55 undefined on input line 4719 Reference `emod_api.schema:module-emod_api.schema' on page 55 undefined on input line 4717 Reference `emod_api.schema_to_class:module-emod_api.schema_to_class' on page 55 undefined on input line 4720 Reference `emod_api.serialization.CensusAndModPop:module-emod_api.serialization.CensusAndModPop' on page 55 undefined on input line 4722 Reference `emod_api.serialization.SerializedPopulation:module-emod_api.serialization.SerializedPopulation' on page 55 undefined on input line 4726 Reference `emod_api.serialization.dtkFileSupport:module-emod_api.serialization.dtkFileSupport' on page 55 undefined on input line 4723 Reference `emod_api.serialization.dtkFileTools:module-emod_api.serialization.dtkFileTools' on page 55 undefined on input line 4724 Reference `emod_api.serialization.dtkFileUtility:module-emod_api.serialization.dtkFileUtility' on page 55 undefined on input line 4725 Reference `emod_api.serialization:module-emod_api.serialization' on page 55 undefined on input line 4721 Reference `emod_api.spatialreports.spatial:module-emod_api.spatialreports.spatial' on page 55 undefined on input line 4728 Reference `emod_api.spatialreports:module-emod_api.spatialreports' on page 55 undefined on input line 4727 Reference `emod_api.tabularoutput:module-emod_api.tabularoutput' on page 55 undefined on input line 4729 Reference `emod_api.weather.weather:module-emod_api.weather.weather' on page 55 undefined on input line 4731 Reference `emod_api.weather:module-emod_api.weather' on page 55 undefined on input line 4730 Reference `emod_api:module-emod_api' on page 55 undefined on input line 4679 Latexmk: Summary of warnings: Latex failed to resolve 53 reference(s) Rule 'makeindex institute-for-disease-modeling-emod-api.idx': File changes, etc: Non-existent destination files: 'institute-for-disease-modeling-emod-api.ind' ------------ Run number 1 of rule 'makeindex institute-for-disease-modeling-emod-api.idx' ------------ ------------ Running 'makeindex -s python.ist -o "institute-for-disease-modeling-emod-api.ind" "institute-for-disease-modeling-emod-api.idx"' ------------ Latexmk: applying rule 'makeindex institute-for-disease-modeling-emod-api.idx'... This is makeindex, version 2.15 [TeX Live 2017] (kpathsea + Thai support). Scanning style file ./python.ist.......done (7 attributes redefined, 0 ignored). Scanning input file institute-for-disease-modeling-emod-api.idx....done (475 entries accepted, 0 rejected). Sorting entries......done (4482 comparisons). Generating output file institute-for-disease-modeling-emod-api.ind....done (906 lines written, 0 warnings). Output written in institute-for-disease-modeling-emod-api.ind. Transcript written in institute-for-disease-modeling-emod-api.ilg. Rule 'pdflatex': File changes, etc: Changed files, or newly in use since previous run(s): 'institute-for-disease-modeling-emod-api.aux' 'institute-for-disease-modeling-emod-api.ind' ------------ Run number 2 of rule 'pdflatex' ------------ ------------ Running 'pdflatex -interaction=nonstopmode -recorder --jobname="institute-for-disease-modeling-emod-api" "emod-api-docs.tex"' ------------ Latexmk: applying rule 'pdflatex'... 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(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) [3] [4] Chapter 2. Underfull \hbox (badness 10000) in paragraph at lines 227--231 []\T1/ptm/m/n/10 Sure. [5] [6] Chapter 3. Underfull \hbox (badness 10000) in paragraph at lines 240--242 []\T1/ptm/m/n/10 python -m Underfull \hbox (badness 10000) in paragraph at lines 243--245 []\T1/ptm/m/n/10 python -m [7] Underfull \hbox (badness 10000) in paragraph at lines 369--369 []\T1/ptm/m/it/10 filename: [][]str[][] = None\T1/ptm/m/n/10 , [8] Overfull \hbox (73.14464pt too wide) in paragraph at lines 487--487 []\T1/ptm/m/it/10 schema_path_in\T1/ptm/m/n/10 , Overfull \hbox (27.46486pt too wide) in paragraph at lines 487--487 \T1/ptm/m/it/10 subn- Overfull \hbox (43.09444pt too wide) in paragraph at lines 487--487 \T1/ptm/m/it/10 ode_list\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 490--492 []\T1/ptm/m/n/10 config = json.load(open(^^Pdefault_config.json^^Q), ob-ject_ho ok=s2c.ReadOnlyDict) os.remove( ^^Pde- Overfull \hbox (109.14464pt too wide) in paragraph at lines 498--498 []\T1/ptm/m/it/10 path_to_schema\T1/ptm/m/n/10 , Overfull \hbox (123.11464pt too wide) in paragraph at lines 498--498 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paragraph at lines 851--851 \T1/ptm/m/it/10 pop_filename_out=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 spatial_grid ded_pop_dir\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 857--857 []\T1/ptm/m/it/10 nodes\T1/ptm/m/n/10 , \T1/ptm/m/it/10 idref=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Gridded Underfull \hbox (badness 10000) in paragraph at lines 857--857 \T1/ptm/m/it/10 world grump2.5arcmin\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , [12] Overfull \hbox (149.53976pt too wide) in paragraph at lines 978--978 []\T1/ptm/m/it/10 distribution: [][]\T1/ptm/m/n/10 emod_api.demographics.Proper tiesAndAttributes.IndividualAttributes.MortalityDistribution[][] Overfull \hbox (98.42032pt too wide) in paragraph at lines 992--992 []\T1/ptm/m/it/10 distribution: [][]\T1/ptm/m/n/10 emod_api.demographics.Proper tiesAndAttributes.IndividualAttributes.AgeDistribution[][]\T1/pcr/m/n/10 ) [13] Underfull \hbox (badness 10000) in paragraph at lines 1054--1054 []\T1/ptm/m/it/10 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(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pcr.fd) Overfull \hbox (18.60422pt too wide) in paragraph at lines 1216--1216 []\T1/ptm/m/it/10 res_in_arcsec\T1/pcr/m/n/10 ) Overfull \hbox (13.07484pt too wide) in paragraph at lines 1235--1235 []\T1/ptm/m/it/10 nodes\T1/ptm/m/n/10 , Overfull \hbox (5.01491pt too wide) in paragraph at lines 1235--1235 \T1/ptm/m/it/10 con- Overfull \hbox (12.23463pt too wide) in paragraph at lines 1235--1235 \T1/ptm/m/it/10 cerns: Overfull \hbox (2.79494pt too wide) in paragraph at lines 1235--1235 \T1/ptm/m/it/10 Op- Overfull \hbox (457.54115pt too wide) in paragraph at lines 1235--1235 \T1/ptm/m/it/10 tional[Union[emod_api.dtk_tools.demographics.DemographicsGenera torConcern.DemographicsGeneratorConcern, Overfull \hbox (429.49101pt too wide) in paragraph at lines 1235--1235 \T1/ptm/m/it/10 List[emod_api.dtk_tools.demographics.DemographicsGeneratorConce rn.DemographicsGeneratorConcern]]] Underfull \hbox (badness 10000) in paragraph at lines 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\T1/ptm/m/it/10 load_other_columns_as_attributes=False\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1320--1320 \T1/ptm/m/it/10 tional[List[[][]str[][]]] Underfull \hbox (badness 10000) in paragraph at lines 1320--1320 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ex- Underfull \hbox (badness 10000) in paragraph at lines 1320--1320 \T1/ptm/m/it/10 clude_columns: Underfull \hbox (badness 10000) in paragraph at lines 1320--1320 \T1/ptm/m/it/10 Op-tional[List[[][]str[][]]] Underfull \hbox (badness 10000) in paragraph at lines 1320--1320 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Overfull \hbox (0.89452pt too wide) in paragraph at lines 1320--1320 \T1/ptm/m/it/10 nodeid_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1320--1320 \T1/ptm/m/it/10 Op-tional[[][]str[][]] Underfull \hbox (badness 10000) in paragraph at lines 1320--1320 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lat-i- Underfull \hbox (badness 10000) in paragraph at lines 1320--1320 \T1/ptm/m/it/10 tude_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1320--1320 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 lat\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lon-gi- Underfull \hbox (badness 10000) in paragraph at lines 1320--1320 \T1/ptm/m/it/10 tude_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1320--1320 \T1/ptm/m/it/10 tion_column_name: [16] Overfull \hbox (54.94496pt too wide) in paragraph at lines 1335--1336 []\T1/pcr/b/n/10 apply. If not specified, we use the DefaultWorldBankEquilibriu mConcern Underfull \hbox (badness 10000) in paragraph at lines 1383--1383 []\T1/ptm/m/it/10 population_input_file: Underfull \hbox (badness 10000) in paragraph at lines 1383--1383 [][]\T1/ptm/m/it/10 str[][]\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-mo-graph- Underfull \hbox (badness 7851) in paragraph at lines 1383--1383 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 con-cerns: Op- Overfull \hbox (349.54115pt too wide) in paragraph at lines 1383--1383 \T1/ptm/m/it/10 tional[Union[emod_api.dtk_tools.demographics.DemographicsGenera torConcern.DemographicsGeneratorConcern, Overfull \hbox (321.49101pt too wide) in paragraph at lines 1383--1383 \T1/ptm/m/it/10 List[emod_api.dtk_tools.demographics.DemographicsGeneratorConce rn.DemographicsGeneratorConcern]]] Underfull \hbox (badness 10000) in paragraph at lines 1383--1383 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1383--1383 \T1/ptm/m/it/10 res_in_arcsec=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 custom\TS1/ptm/ m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (0.83415pt too wide) in paragraph at lines 1383--1383 \T1/ptm/m/it/10 node_id_from_lat_long=True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1383--1383 \T1/ptm/m/it/10 de-fault_population: Underfull \hbox (badness 10000) in paragraph at lines 1383--1383 [][]\T1/ptm/m/it/10 int[][] = 1000\T1/ptm/m/n/10 , Overfull \hbox (49.21327pt too wide) in paragraph at lines 1383--1383 \T1/ptm/m/it/10 load_other_columns_as_attributes=False\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1383--1383 \T1/ptm/m/it/10 in-clude_columns: Op- Underfull \hbox (badness 10000) in paragraph at lines 1383--1383 \T1/ptm/m/it/10 tional[List[[][]str[][]]] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1383--1383 \T1/ptm/m/it/10 ex-clude_columns: Op- Underfull \hbox (badness 10000) in paragraph at lines 1383--1383 \T1/ptm/m/it/10 tional[List[[][]str[][]]] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1383--1383 \T1/ptm/m/it/10 nodeid_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1383--1383 \T1/ptm/m/it/10 Op-tional[[][]str[][]] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1383--1383 \T1/ptm/m/it/10 lat-i-tude_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1383--1383 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 lat\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lon-gi- Underfull \hbox (badness 10000) in paragraph at lines 1383--1383 \T1/ptm/m/it/10 tude_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1383--1383 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 lon\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pop-u-la- Underfull \hbox (badness 6236) in paragraph at lines 1383--1383 \T1/ptm/m/it/10 tion_column_name: [][]str[][] = [17] Overfull \hbox (54.94496pt too wide) in paragraph at lines 1398--1399 []\T1/pcr/b/n/10 apply. If not specified, we use the DefaultWorldBankEquilibriu mConcern [18] Overfull \hbox (6.3048pt too wide) in paragraph at lines 1454--1454 []\T1/ptm/m/it/10 lat\T1/ptm/m/n/10 , Overfull \hbox (13.5249pt too wide) in paragraph at lines 1454--1454 \T1/ptm/m/it/10 long\T1/ptm/m/n/10 , Overfull \hbox (115.34473pt too wide) in paragraph at lines 1454--1454 \T1/ptm/m/it/10 res=0.008333333333333333\T1/pcr/m/n/10 ) Overfull \hbox (37.09444pt too wide) in paragraph at lines 1460--1460 []\T1/ptm/m/it/10 nodelist\T1/pcr/m/n/10 ) Overfull \hbox (11.74474pt too wide) in paragraph at lines 1466--1466 []\T1/ptm/m/it/10 node_info\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1466--1466 \T1/ptm/m/it/10 De- Underfull \hbox (badness 10000) in paragraph at lines 1466--1466 \T1/ptm/m/it/10 moDf\T1/ptm/m/n/10 , Overfull \hbox (91.34473pt too wide) in paragraph at lines 1466--1466 \T1/ptm/m/it/10 res=0.008333333333333333\T1/pcr/m/n/10 ) Overfull \hbox (71.74474pt too wide) in paragraph at lines 1472--1472 []\T1/ptm/m/it/10 node_info\T1/ptm/m/n/10 , Overfull \hbox (41.2549pt too wide) in paragraph at lines 1472--1472 \T1/ptm/m/it/10 ex- Overfull \hbox (118.90427pt too wide) in paragraph at lines 1472--1472 \T1/ptm/m/it/10 tra_data_columns=[]\T1/ptm/m/n/10 , Overfull \hbox (151.34473pt too wide) in paragraph at lines 1472--1472 \T1/ptm/m/it/10 res=0.008333333333333333\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1512--1514 []\T1/ptm/m/n/10 json ob-ject aka python dict that can be di-rectly passed to D e-mo-graph- Underfull \hbox (badness 10000) in paragraph at lines 1525--1525 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1525--1525 \T1/ptm/m/it/10 mean=0.0\T1/ptm/m/n/10 , [19] Underfull \hbox (badness 10000) in paragraph at lines 1537--1539 []\T1/ptm/m/n/10 json ob-ject aka python dict that can be di-rectly passed to D e-mo-graph- Underfull \hbox (badness 10000) in paragraph at lines 1550--1550 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1556--1558 []\T1/ptm/m/n/10 json ob-ject aka python dict that can be di-rectly passed to D e-mo-graph- Underfull \hbox (badness 10000) in paragraph at lines 1588--1588 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , \T1/ptm/m/it/10 low_prev\T1/ptm/m/n/10 , Underfull \hbox (badness 5091) in paragraph at lines 1588--1588 \T1/ptm/m/it/10 high_prev\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-scrip- Overfull \hbox (22.30493pt too wide) in paragraph at lines 1600--1600 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Overfull \hbox (7.6847pt too wide) in paragraph at lines 1600--1600 \T1/ptm/m/it/10 set- Overfull \hbox (34.0548pt too wide) in paragraph at lines 1600--1600 \T1/ptm/m/it/10 ting=1.0\T1/pcr/m/n/10 ) Overfull \hbox (10.30493pt too wide) in paragraph at lines 1606--1606 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1606--1606 \T1/ptm/m/it/10 pro- Overfull \hbox (58.54413pt too wide) in paragraph at lines 1606--1606 \T1/ptm/m/it/10 tected_setting=0.0\T1/ptm/m/n/10 , Overfull \hbox (9.20457pt too wide) in paragraph at lines 1606--1606 \T1/ptm/m/it/10 thresh- Overfull \hbox (53.51486pt too wide) in paragraph at lines 1606--1606 \T1/ptm/m/it/10 old_age=1825.0\T1/pcr/m/n/10 ) Overfull \hbox (46.30493pt too wide) in paragraph at lines 1612--1612 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Overfull \hbox (42.23488pt too wide) in paragraph at lines 1612--1612 \T1/ptm/m/it/10 mean- Overfull \hbox (44.91478pt too wide) in paragraph at lines 1612--1612 \T1/ptm/m/it/10 AgeAt- Overfull \hbox (28.90492pt too wide) in paragraph at lines 1612--1612 \T1/ptm/m/it/10 In- Overfull \hbox (32.23474pt too wide) in paragraph at lines 1612--1612 \T1/ptm/m/it/10 fec- Overfull \hbox (58.0548pt too wide) in paragraph at lines 1612--1612 \T1/ptm/m/it/10 tion=2.5\T1/pcr/m/n/10 ) Overfull \hbox (55.80493pt too wide) in paragraph at lines 1618--1618 []\T1/ptm/m/it/10 demog\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1624--1624 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1624--1624 \T1/ptm/m/it/10 age_bins\T1/ptm/m/n/10 , [20] Overfull \hbox (25.80493pt too wide) in paragraph at lines 1646--1646 []\T1/ptm/m/it/10 demog\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1664--1665 []\T1/pcr/b/n/10 "15-19", etc. up to "45-49", and a column named "Years" with Overfull \hbox (64.51184pt too wide) in paragraph at lines 1696--1696 [][]\T1/ptm/m/n/10 emod_api.demographics.PropertiesAndAttributes.IndividualAttr ibutes[][] Underfull \hbox (badness 10000) in paragraph at lines 1696--1696 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in-di-vid-ual_properties : Overfull \hbox (65.26187pt too wide) in paragraph at lines 1696--1696 [][]\T1/ptm/m/n/10 emod_api.demographics.PropertiesAndAttributes.IndividualProp erties[][] Underfull \hbox (badness 10000) in paragraph at lines 1696--1696 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 node_attributes: Overfull \hbox (45.31218pt too wide) in paragraph at lines 1696--1696 [][]\T1/ptm/m/n/10 emod_api.demographics.PropertiesAndAttributes.NodeAttributes [][] [21] Overfull \hbox (22.9045pt too wide) in paragraph at lines 1790--1790 []\T1/ptm/m/it/10 nodeid\T1/ptm/m/n/10 , \T1/ptm/m/it/10 res_in_deg=0.041666666 666666664\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1796--1796 []\T1/ptm/m/it/10 lat\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lon\T1/ptm/m/n/10 , Overfull \hbox (9.16464pt too wide) in paragraph at lines 1796--1796 \T1/ptm/m/it/10 res_in_deg=0.041666666666666664\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1802--1802 []\T1/ptm/m/it/10 lat\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lon\T1/ptm/m/n/10 , Overfull \hbox (59.95372pt too wide) in paragraph at lines 1826--1826 []\T1/ptm/m/it/10 initial_distribution: Overfull \hbox (21.8143pt too wide) in paragraph at lines 1826--1826 \T1/ptm/m/it/10 List[[][]float[][]] Underfull \hbox (badness 10000) in paragraph at lines 1826--1826 \T1/ptm/m/it/10 = Overfull \hbox (4.85487pt too wide) in paragraph at lines 1826--1826 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (3.0149pt too wide) in paragraph at lines 1826--1826 \T1/ptm/m/it/10 prop- Overfull \hbox (27.15454pt too wide) in paragraph at lines 1826--1826 \T1/ptm/m/it/10 erty=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1826--1826 \T1/ptm/m/it/10 val- Underfull \hbox (badness 10000) in paragraph at lines 1826--1826 \T1/ptm/m/it/10 ues: Overfull \hbox (21.8143pt too wide) in paragraph at lines 1826--1826 \T1/ptm/m/it/10 List[[][]float[][]] Underfull \hbox (badness 10000) in paragraph at lines 1826--1826 \T1/ptm/m/it/10 = Overfull \hbox (4.85487pt too wide) in paragraph at lines 1826--1826 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (1.09485pt too wide) in paragraph at lines 1826--1826 \T1/ptm/m/it/10 tran- Underfull \hbox (badness 10000) in paragraph at lines 1826--1826 \T1/ptm/m/it/10 si- Overfull \hbox (4.02464pt too wide) in paragraph at lines 1826--1826 \T1/ptm/m/it/10 tions: Overfull \hbox (21.8143pt too wide) in paragraph at lines 1826--1826 \T1/ptm/m/it/10 List[[][]float[][]] Underfull \hbox (badness 10000) in paragraph at lines 1826--1826 \T1/ptm/m/it/10 = Overfull \hbox (4.85487pt too wide) in paragraph at lines 1826--1826 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (4.98474pt too wide) in paragraph at lines 1826--1826 \T1/ptm/m/it/10 trans- Underfull \hbox (badness 10000) in paragraph at lines 1826--1826 \T1/ptm/m/it/10 mis- Overfull \hbox (32.35434pt too wide) in paragraph at lines 1826--1826 \T1/ptm/m/it/10 sion_matrix: Overfull \hbox (21.8143pt too wide) in paragraph at lines 1826--1826 \T1/ptm/m/it/10 List[[][]float[][]] Underfull \hbox (badness 10000) in paragraph at lines 1826--1826 \T1/ptm/m/it/10 = Overfull \hbox (8.35487pt too wide) in paragraph at lines 1826--1826 \T1/ptm/m/it/10 None\T1/pcr/m/n/10 ) Overfull \hbox (76.12407pt too wide) in paragraph at lines 1840--1840 []\T1/ptm/m/it/10 individual_property: Overfull \hbox (269.15215pt too wide) in paragraph at lines 1840--1840 [][]\T1/ptm/m/n/10 emod_api.demographics.PropertiesAndAttributes.IndividualProp erty[][] Underfull \hbox (badness 10000) in paragraph at lines 1840--1840 \T1/ptm/m/it/10 = Overfull \hbox (20.35487pt too wide) in paragraph at lines 1840--1840 \T1/ptm/m/it/10 None\T1/pcr/m/n/10 ) [22] Overfull \hbox (109.22414pt too wide) in paragraph at lines 1871--1871 []\T1/ptm/m/it/10 age_distribution_flag=None\T1/ptm/m/n/10 , Overfull \hbox (94.32413pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 age_distribution1=None\T1/ptm/m/n/10 , Overfull \hbox (94.32413pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 age_distribution2=None\T1/ptm/m/n/10 , Overfull \hbox (89.32413pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 age_distribution=None\T1/ptm/m/n/10 , Overfull \hbox (18.82483pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 preva- Overfull \hbox (116.0839pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 lence_distribution_flag=None\T1/ptm/m/n/10 , Overfull \hbox (18.82483pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 preva- Overfull \hbox (101.18388pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 lence_distribution1=None\T1/ptm/m/n/10 , Overfull \hbox (18.82483pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 preva- Overfull \hbox (101.18388pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 lence_distribution2=None\T1/ptm/m/n/10 , Overfull \hbox (6.57483pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 im- Overfull \hbox (8.79494pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 mu- Overfull \hbox (109.9839pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 nity_distribution_flag=None\T1/ptm/m/n/10 , Overfull \hbox (6.57483pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 im- Overfull \hbox (8.79494pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 mu- Overfull \hbox (95.0839pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 nity_distribution1=None\T1/ptm/m/n/10 , Overfull \hbox (6.57483pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 im- Overfull \hbox (8.79494pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 mu- Overfull \hbox (95.0839pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 nity_distribution2=None\T1/ptm/m/n/10 , Overfull \hbox (109.9838pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 risk_distribution_flag=None\T1/ptm/m/n/10 , Overfull \hbox (95.08379pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 risk_distribution1=None\T1/ptm/m/n/10 , Overfull \hbox (95.08379pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 risk_distribution2=None\T1/ptm/m/n/10 , Overfull \hbox (6.57483pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 mi- Overfull \hbox (10.31496pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 gra- Overfull \hbox (169.32329pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 tion_heterogeneity_distribution_flag=None\T1/ptm/m/n/10 , Overfull \hbox (6.57483pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 mi- Overfull \hbox (10.31496pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 gra- Overfull \hbox (154.42328pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 tion_heterogeneity_distribution1=None\T1/ptm/m/n/10 , Overfull \hbox (6.57483pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 mi- Overfull \hbox (10.31496pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 gra- Overfull \hbox (154.42328pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 tion_heterogeneity_distribution2=None\T1/ptm/m/n/10 , Overfull \hbox (12.48488pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 mor- Overfull \hbox (7.13475pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 tal- Overfull \hbox (85.0839pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 ity_distribution=None\T1/ptm/m/n/10 , Overfull \hbox (9.35475pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 sus- Overfull \hbox (10.45485pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 cep- Overfull \hbox (2.13475pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 ti- Overfull \hbox (7.13475pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 bil- Overfull \hbox (88.5839pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 ity_distribution=None\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1876--1876 []\T1/ptm/m/it/10 distribution_values: List[[][]float[][]] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 1890--1890 []\T1/ptm/m/it/10 distribution_values=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-s ult_scale_factor=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- [23] Underfull \hbox (badness 10000) in paragraph at lines 1910--1910 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 axis_units=None\T1/ptm/m /n/10 , \T1/ptm/m/it/10 num_distribution_axes=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1910--1910 \T1/ptm/m/it/10 pop-u-la-tion_groups=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-su lt_scale_factor=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 []\T1/ptm/m/it/10 airport: Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 [][]\T1/ptm/m/it/10 int[][] = Overfull \hbox (4.8247pt too wide) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 tude=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Overfull \hbox (0.98447pt too wide) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 birth_rate: Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 [][]\T1/ptm/m/it/10 float[][] = Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 coun- Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 try=None\T1/ptm/m/n/10 , Overfull \hbox (9.42453pt too wide) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 growth_rate: Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 [][]\T1/ptm/m/it/10 float[][] = Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 lat-i-tude: Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 [][]\T1/ptm/m/it/10 float[][] = Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 lon-gi-tude: Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 [][]\T1/ptm/m/it/10 float[][] = Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 meta-data: Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 [][]\T1/ptm/m/it/10 dict[][] = Overfull \hbox (22.25432pt too wide) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 tial_population: Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 [][]\T1/ptm/m/it/10 int[][] = Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 sea-port: Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 [][]\T1/ptm/m/it/10 int[][] = Overfull \hbox (50.58374pt too wide) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 val_habitat_multiplier: Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 List[[][]float[][]] Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 ini- Overfull \hbox (86.9334pt too wide) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 tial_vectors_per_species=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 in-fec-tiv- Overfull \hbox (15.02396pt too wide) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 ity_multiplier: Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 [][]\T1/ptm/m/it/10 float[][] = Overfull \hbox (15.23419pt too wide) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 tra_attributes: Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 [][]\T1/ptm/m/it/10 dict[][] = [24] [25] Underfull \hbox (badness 10000) in paragraph at lines 2016--2017 []\T1/pcr/b/n/10 distribution \T1/ptm/m/n/10 ^^U The se-lected dis-tri-bu-tion (need to come from Underfull \hbox (badness 10000) in paragraph at lines 2036--2036 []\T1/ptm/m/it/10 filename\T1/ptm/m/n/10 , \T1/ptm/m/it/10 dis-tri-bu-tion\T1/p tm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2037--2038 \T1/ptm/m/n/10 Set the \T1/pcr/m/n/10 ImmunityDistributionFlag\T1/ptm/m/n/10 , \T1/pcr/m/n/10 ImmunityDistribution1 \T1/ptm/m/n/10 and Underfull \hbox (badness 10000) in paragraph at lines 2064--2064 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2064--2064 \T1/ptm/m/it/10 fn\T1/ptm/m/n/10 , [26] Underfull \hbox (badness 10000) in paragraph at lines 2134--2134 []\T1/ptm/m/it/10 cb\T1/ptm/m/n/10 , Overfull \hbox (28.70406pt too wide) in paragraph at lines 2134--2134 \T1/ptm/m/it/10 use_existing=False\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 2160--2160 []\T1/ptm/m/it/10 cb\T1/ptm/m/n/10 , Overfull \hbox (34.70406pt too wide) in paragraph at lines 2160--2160 \T1/ptm/m/it/10 use_existing=False\T1/pcr/m/n/10 ) [27] Underfull \hbox (badness 10000) in paragraph at lines 2232--2232 []\T1/ptm/m/it/10 point\T1/ptm/m/n/10 , Overfull \hbox (37.41425pt too wide) in paragraph at lines 2232--2232 \T1/ptm/m/it/10 grid_id_2_cell_id\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2273--2273 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Event_Trigger\T1/ptm/m/n /10 , Overfull \hbox (73.22345pt too wide) in paragraph at lines 2273--2273 \T1/ptm/m/it/10 Node_Selection_Type=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 DISTANCE_ ONLY\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (57.50374pt too wide) in paragraph at lines 2273--2273 \T1/ptm/m/it/10 Max_Distance_To_Other_Nodes_Km=- [28] Underfull \hbox (badness 10000) in paragraph at lines 2308--2308 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 In-ter-ven- Underfull \hbox (badness 10000) in paragraph at lines 2351--2352 []\T1/pcr/b/n/10 but without the distribution, which is inferred. E.g., Underfull \hbox (badness 10000) in paragraph at lines 2372--2372 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Event_Or_Config=\TS1/ptm /m/it/10 '\T1/ptm/m/it/10 Event\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/ 10 Con-fig=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2372--2372 \T1/ptm/m/it/10 Event=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 NoTrigger\TS1/ptm/m/it/ 10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Ten-dency=1.0\T1/ptm/m/n/10 , \T1/ptm/m/it /10 Sin-gle_Use=True\T1/ptm/m/n/10 , [29] Underfull \hbox (badness 10000) in paragraph at lines 2416--2416 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Trig-gers\T1/ptm/m/n/10 , \T1/ptm/m/it/10 In-ter-ven-tions\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Prop- Underfull \hbox (badness 10000) in paragraph at lines 2416--2416 \T1/ptm/m/it/10 erty_Restrictions=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 De-mo- Underfull \hbox (badness 10000) in paragraph at lines 2416--2416 \T1/ptm/m/it/10 graphic_Coverage=1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar-get_Ag e_Min=0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar- Underfull \hbox (badness 10000) in paragraph at lines 2416--2416 \T1/ptm/m/it/10 get_Age_Max=45625\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar-get_Gende r=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 All\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/p tm/m/it/10 Tar- Underfull \hbox (badness 10000) in paragraph at lines 2416--2416 \T1/ptm/m/it/10 get_Residents_Only=1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Duration=- 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Black- Underfull \hbox (badness 10000) in paragraph at lines 2416--2416 \T1/ptm/m/it/10 out_Event_Trigger=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Black-ou t_Period=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2416--2416 \T1/ptm/m/it/10 Black-out_On_First_Occurrence=None\T1/ptm/m/n/10 , \T1/ptm/m/it /10 Dis-qual-i-fy- Underfull \hbox (badness 10000) in paragraph at lines 2478--2478 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar-get_Property_Key\T1/ ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2478--2478 \T1/ptm/m/it/10 Tar-get_Property_Value\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2478--2478 \T1/ptm/m/it/10 Daily_Probability=1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Max- Underfull \hbox (badness 10000) in paragraph at lines 2478--2478 \T1/ptm/m/it/10 i-mum_Duration=1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Revert=- Underfull \hbox (badness 10000) in paragraph at lines 2478--2478 \T1/ptm/m/it/10 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 In-ter-ven-tion_Name=\TS1/ptm /m/it/10 ''\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2478--2478 \T1/ptm/m/it/10 Event_Trigger_Distributed=\TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , [30] Underfull \hbox (badness 10000) in paragraph at lines 2486--2487 []\T1/pcr/b/n/10 The key part of the new key-value pair of the IP. Underfull \hbox (badness 10000) in paragraph at lines 2489--2490 []\T1/pcr/b/n/10 The value part of the new key-value pair of the IP. Underfull \hbox (badness 10000) in paragraph at lines 2495--2496 []\T1/pcr/b/n/10 The daily probability that an individual will move to the Underfull \hbox (badness 10000) in paragraph at lines 2498--2499 []\T1/pcr/b/n/10 The maximum amount of time individuals have to move Underfull \hbox (badness 10000) in paragraph at lines 2498--2499 \T1/pcr/b/n/10 to a new group. This timing works in conjunction with Underfull \hbox (badness 10000) in paragraph at lines 2501--2502 []\T1/pcr/b/n/10 The number of days before an individual moves back to their Underfull \hbox (badness 10000) in paragraph at lines 2504--2505 []\T1/pcr/b/n/10 Optional Intervention_Name. Useful if managing a replacement Underfull \hbox (badness 10000) in paragraph at lines 2507--2508 []\T1/pcr/b/n/10 Optional broadcast trigger to be published when PVC is Underfull \hbox (badness 10000) in paragraph at lines 2510--2511 []\T1/pcr/b/n/10 Optional broadcast trigger to be published when PVC is Underfull \hbox (badness 10000) in paragraph at lines 2528--2528 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Start_Day: [][]int[][]\T 1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2528--2528 \T1/ptm/m/it/10 Node_Ids=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Node- Underfull \hbox (badness 10000) in paragraph at lines 2528--2528 \T1/ptm/m/it/10 set_Config=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Num- Underfull \hbox (badness 10000) in paragraph at lines 2528--2528 \T1/ptm/m/it/10 ber_Repetitions: [][]int[][] = 1\T1/ptm/m/n/10 , Overfull \hbox (4.90335pt too wide) in paragraph at lines 2528--2528 \T1/ptm/m/it/10 Timesteps_Between_Repetitions: Underfull \hbox (badness 10000) in paragraph at lines 2528--2528 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Sched-uled_Campaign_Event\TS1/ptm/m/it/10 '\T 1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2528--2528 \T1/ptm/m/it/10 Prop-erty_Restrictions=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2528--2528 \T1/ptm/m/it/10 = 1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar-get_Age_Min=0\T1/ptm/ m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2528--2528 \T1/ptm/m/it/10 Tar-get_Age_Max=45625\T1/ptm/m/n/10 , [31] Underfull \hbox (badness 10000) in paragraph at lines 2595--2595 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Start_Day: [][]int[][]\T 1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2595--2595 \T1/ptm/m/it/10 List[[][]str[][]]\T1/ptm/m/n/10 , \T1/ptm/m/it/10 In-ter-ven-ti on_List: Underfull \hbox (badness 10000) in paragraph at lines 2595--2595 \T1/ptm/m/it/10 List[[][]dict[][]]\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Node_Ids=Non e\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2595--2595 \T1/ptm/m/it/10 Node-set_Config=None\T1/ptm/m/n/10 , Overfull \hbox (17.59343pt too wide) in paragraph at lines 2595--2595 \T1/ptm/m/it/10 Node_Property_Restrictions=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2595--2595 \T1/ptm/m/it/10 Prop-erty_Restrictions=None\T1/ptm/m/n/10 , Overfull \hbox (4.90335pt too wide) in paragraph at lines 2595--2595 \T1/ptm/m/it/10 Timesteps_Between_Repetitions: Underfull \hbox (badness 10000) in paragraph at lines 2595--2595 [][]\T1/ptm/m/it/10 int[][] = - 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 De-mo- Underfull \hbox (badness 10000) in paragraph at lines 2595--2595 \T1/ptm/m/it/10 graphic_Coverage: [][]float[][] Underfull \hbox (badness 10000) in paragraph at lines 2595--2595 \T1/ptm/m/it/10 = 1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar-get_Age_Min=0\T1/ptm/ m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2595--2595 \T1/ptm/m/it/10 Tar-get_Age_Max=45625\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2595--2595 \T1/ptm/m/it/10 Tar-get_Residents_Only=1\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2595--2595 \T1/ptm/m/it/10 Duration=- 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Black- Underfull \hbox (badness 10000) in paragraph at lines 2595--2595 \T1/ptm/m/it/10 Black-out_Period=0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Black- Underfull \hbox (badness 10000) in paragraph at lines 2595--2595 \T1/ptm/m/it/10 out_On_First_Occurrence=0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2595--2595 \T1/ptm/m/it/10 Dis-qual-i-fy- Underfull \hbox (badness 10000) in paragraph at lines 2595--2595 \T1/ptm/m/it/10 ing_Properties=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 De- [32] Underfull \hbox (badness 6078) in paragraph at lines 2683--2683 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Base_Sensitivity: [][]fl oat[][] = Underfull \hbox (badness 10000) in paragraph at lines 2683--2683 \T1/ptm/m/it/10 Event_Trigger_Distributed: [][]str[][] Underfull \hbox (badness 10000) in paragraph at lines 2683--2683 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Event_Trigger_Expired: Underfull \hbox (badness 10000) in paragraph at lines 2683--2683 [][]\T1/ptm/m/it/10 str[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Pos-i- Underfull \hbox (badness 10000) in paragraph at lines 2683--2683 \T1/ptm/m/it/10 tive_Diagnosis_Intervention=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2683--2683 \T1/ptm/m/it/10 Pos-i-tive_Diagnosis_Event: Underfull \hbox (badness 10000) in paragraph at lines 2683--2683 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Pos-i-tiveRe-su lt\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Neg-a- Underfull \hbox (badness 10000) in paragraph at lines 2683--2683 \T1/ptm/m/it/10 tive_Diagnosis_Intervention=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2683--2683 \T1/ptm/m/it/10 Neg-a-tive_Diagnosis_Event: Underfull \hbox (badness 10000) in paragraph at lines 2683--2683 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Neg-a-tiveRe-su lt\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Treat- [33] Underfull \hbox (badness 10000) in paragraph at lines 2737--2737 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2737--2737 \T1/ptm/m/it/10 trig-ger\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-lay\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2737--2737 \T1/ptm/m/it/10 in-ter-ven-tion\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2737--2737 \T1/ptm/m/it/10 ip_targeting=[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2751--2752 []\T1/pcr/b/n/10 without the distribution, which is inferred. E.g., { Underfull \hbox (badness 10000) in paragraph at lines 2774--2774 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2774--2774 \T1/ptm/m/it/10 new_ip_key\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2774--2774 \T1/ptm/m/it/10 new_ip_value\T1/ptm/m/n/10 , Overfull \hbox (25.72469pt too wide) in paragraph at lines 2774--2774 \T1/ptm/m/it/10 change_age_in_days\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2774--2774 \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 2774--2774 \T1/ptm/m/it/10 vert_in_days\T1/ptm/m/n/10 , Overfull \hbox (8.6443pt too wide) in paragraph at lines 2774--2774 \T1/ptm/m/it/10 ip_targeting_key\T1/ptm/m/n/10 , Overfull \hbox (17.38419pt too wide) in paragraph at lines 2774--2774 \T1/ptm/m/it/10 ip_targeting_value\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2774--2774 \T1/ptm/m/it/10 cov-er- [34] Underfull \hbox (badness 10000) in paragraph at lines 2833--2833 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 nodeto\T1/ptm/m/n/10 , \ T1/ptm/m/it/10 start_day: Underfull \hbox (badness 8056) in paragraph at lines 2833--2833 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age: [][ ]float[][] Underfull \hbox (badness 7851) in paragraph at lines 2833--2833 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar-get_age: [][]dict[][ ] Underfull \hbox (badness 10000) in paragraph at lines 2833--2833 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 nodes_from_ids: Underfull \hbox (badness 10000) in paragraph at lines 2833--2833 \T1/ptm/m/it/10 List[[][]int[][]] = None\T1/ptm/m/n/10 , Overfull \hbox (5.56337pt too wide) in paragraph at lines 2833--2833 \T1/ptm/m/it/10 ind_property_restrictions=None\T1/ptm/m/n/10 , Overfull \hbox (12.22342pt too wide) in paragraph at lines 2833--2833 \T1/ptm/m/it/10 node_property_restrictions=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2833--2833 \T1/ptm/m/it/10 trig-gered_campaign_delay=0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2833--2833 \T1/ptm/m/it/10 trig-ger_condition_list=None\T1/ptm/m/n/10 , [35] Underfull \hbox (badness 10000) in paragraph at lines 2862--2866 []\T1/ptm/m/n/10 {^^PDuration_Before_Leaving_Distribution^^Q:^^QGAUSSIAN_DISTRI BUTION^^Q, Underfull \hbox (badness 10000) in paragraph at lines 2862--2866 \T1/ptm/m/n/10 ^^PDu-ra-tion_Before_Leaving_Gaussian_Mean^^Q: 14, ^^PDu- Underfull \hbox (badness 10000) in paragraph at lines 2862--2866 \T1/ptm/m/n/10 ra-tion_Before_Leaving_Gaussian_Std_Dev^^Q 3} {^^PDu-ra- Underfull \hbox (badness 10000) in paragraph at lines 2862--2866 \T1/ptm/m/n/10 tion_Before_Leaving_Distribution^^Q:^^QPOISSON_DISTRIBUTION^^Q, ^^PDu-ra- Underfull \hbox (badness 10000) in paragraph at lines 2875--2878 []\T1/ptm/m/n/10 {^^PDuration_At_Node_Distribution^^Q:^^QGAUSSIAN_DISTRIBUTION^ ^Q, ^^PDu-ra- Underfull \hbox (badness 10000) in paragraph at lines 2875--2878 \T1/ptm/m/n/10 tion_At_Node_Gaussian_Mean^^Q: 14, ^^PDu-ra-tion_At_Node_Gaussia n_Std_Dev^^Q Underfull \hbox (badness 10000) in paragraph at lines 2875--2878 \T1/ptm/m/n/10 3} {^^PDu-ra-tion_At_Node_Distribution^^Q:^^QPOISSON_DISTRIBUTIO N^^Q, ^^PDu-ra- Overfull \hbox (19.69089pt too wide) in paragraph at lines 2922--2926 \T1/ptm/m/n/10 from emod_api im-port cam-paign as camp dan = {^^PDu-ra-tion_At_ Node_Distribution^^Q:^^QPOISSON_DISTRIBUTION^^Q, Overfull \hbox (57.24088pt too wide) in paragraph at lines 2922--2926 \T1/ptm/m/n/10 ^^PDu-ra-tion_At_Node_Poisson_Mean^^Q 30} dbl = {^^PDu-ra-tion_B efore_Leaving_Distribution^^Q:^^QGAUSSIAN_DISTRIBUTION^^Q, Underfull \hbox (badness 10000) in paragraph at lines 2927--2932 [] [36] Underfull \hbox (badness 10000) in paragraph at lines 2943--2943 \T1/ptm/m/it/10 pro-file=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 CONST\TS1/ptm/m/it/1 0 '\T1/ptm/m/n/10 , ! LaTeX Error: Too deeply nested. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.2952 ...{CONST(ANT)}] \leavevmode\begin{itemize} Underfull \hbox (badness 10000) in paragraph at lines 3014--3014 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day=1\T1/ptm/m/n/1 0 , Underfull \hbox (badness 10000) in paragraph at lines 3014--3014 \T1/ptm/m/it/10 new_infectivity=1.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3014--3014 \T1/ptm/m/it/10 pro-file=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 CONST\TS1/ptm/m/it/1 0 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3014--3014 \T1/ptm/m/it/10 node_ids=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3014--3014 \T1/ptm/m/it/10 re-cur-ring=True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3022--3022 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3033--3033 \T1/ptm/m/it/10 age=0.01\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ig-nore_immunity=None\ T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3042--3042 []\T1/ptm/m/it/10 campaign_builder\T1/ptm/m/n/10 , \T1/ptm/m/it/10 timestep\T1/ ptm/m/n/10 , [37] Underfull \hbox (badness 10000) in paragraph at lines 3076--3076 \T1/ptm/m/it/10 ef-fi-cacy=1.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3076--3076 \T1/ptm/m/it/10 sv_name=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Vaccine\TS1/ptm/m/it/ 10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3076--3076 \T1/ptm/m/it/10 wan-ing_duration=100\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3076--3076 \T1/ptm/m/it/10 d_a_d=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3076--3076 \T1/ptm/m/it/10 cost_to_consumer=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3076--3076 \T1/ptm/m/it/10 e_i_r=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in-ter-ven- Underfull \hbox (badness 10000) in paragraph at lines 3097--3097 []\T1/ptm/m/it/10 timestep\T1/ptm/m/n/10 , \T1/ptm/m/it/10 file- Underfull \hbox (badness 10000) in paragraph at lines 3114--3114 []\T1/ptm/m/it/10 schema_path\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ini-tial=1.0\T1/p tm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3114--3114 \T1/ptm/m/it/10 box_duration=365\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de- [38] [39] Underfull \hbox (badness 5548) in paragraph at lines 3221--3224 []\T1/ptm/m/n/10 EMOD/DTK for-mat mi-gra-tion files (and as-so-ci-ated meta-dat a files) can be writ-ten with mi-gra- [40] Underfull \hbox (badness 10000) in paragraph at lines 3487--3487 \T1/ptm/m/it/10 num_nodes=100\T1/ptm/m/n/10 , \T1/ptm/m/it/10 mig_factor=1.0\T1 /ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3487--3487 \T1/ptm/m/it/10 frac_rural=0.3\T1/ptm/m/n/10 , \T1/ptm/m/it/10 id_ref=\TS1/ptm/ m/it/10 '\T1/ptm/m/it/10 from_params\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm/ m/it/10 mi- Overfull \hbox (68.98433pt too wide) in paragraph at lines 3498--3498 []\T1/ptm/m/it/10 demographics_file_path: Underfull \hbox (badness 10000) in paragraph at lines 3498--3498 [][]\T1/ptm/m/it/10 str[][]\T1/ptm/m/n/10 , Overfull \hbox (2.42482pt too wide) in paragraph at lines 3498--3498 \T1/ptm/m/it/10 params: Underfull \hbox (badness 10000) in paragraph at lines 3498--3498 [][]\T1/ptm/m/it/10 str[][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3498--3498 \T1/ptm/m/it/10 id_ref: Underfull \hbox (badness 10000) in paragraph at lines 3498--3498 [][]\T1/ptm/m/it/10 str[][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3498--3498 \T1/ptm/m/it/10 mi-gra- Overfull \hbox (24.21457pt too wide) in paragraph at lines 3498--3498 \T1/ptm/m/it/10 tion_type=1\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 3498--3498 \OMS/cmsy/m/n/10 !$ Overfull \hbox (135.19371pt too wide) in paragraph at lines 3498--3498 [][]\T1/ptm/m/it/10 emod_api.migration.migration.Migration[][] [41] Overfull \hbox (2.15437pt too wide) in paragraph at lines 3526--3526 []\T1/ptm/m/it/10 demographics_file_path\T1/ptm/m/n/10 , Overfull \hbox (24.70302pt too wide) in paragraph at lines 3580--3580 []\T1/ptm/m/it/10 path_to_binary\T1/ptm/m/n/10 , \T1/ptm/m/it/10 path_to_write_ schema=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 schema.json\TS1/ptm/m/it/10 '\T1/pcr/m /n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 3601--3601 []\T1/ptm/m/it/10 input_serpop_path\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3601--3601 \T1/ptm/m/it/10 mod_fn=None\T1/ptm/m/n/10 , [42] Underfull \hbox (badness 10000) in paragraph at lines 3622--3622 []\T1/ptm/m/it/10 file: [43] Underfull \hbox (badness 10000) in paragraph at lines 3748--3748 []\T1/ptm/m/it/10 name: [][]str[][]\T1/ptm/m/n/10 , \T1/ptm/m/it/10 han-dle\T1/ ptm/m/n/10 , \T1/ptm/m/it/10 cur- Underfull \hbox (badness 10000) in paragraph at lines 3783--3783 []\T1/ptm/m/it/10 handle\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cur- [44] [45] [46] Underfull \hbox (badness 10000) in paragraph at lines 4146--4146 \T1/ptm/m/it/10 List[[][]int[][]] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 data: Underfull \hbox (badness 10000) in paragraph at lines 4146--4146 \T1/ptm/m/it/10 numpy.array = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start: [47] [48] [49] [50] [51] [52] Chapter 4. [53] [54] Overfull \hbox (66.6225pt too wide) in paragraph at lines 4685--4686 []\T1/pcr/m/n/10 emod_api.config.default_from_schema_no_validation\T1/ptm/m/n/1 0 , Overfull \hbox (36.6225pt too wide) in paragraph at lines 4686--4687 []\T1/pcr/m/n/10 emod_api.config.dtk_post_process_adhocevents\T1/ptm/m/n/10 , Overfull \hbox (30.6225pt too wide) in paragraph at lines 4687--4688 []\T1/pcr/m/n/10 emod_api.config.dtk_pre_process_adhocevents\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4688--4689 []\T1/pcr/m/n/10 emod_api.config.dtk_pre_process_w5ml\T1/ptm/m/n/10 , Overfull \hbox (12.6225pt too wide) in paragraph at lines 4696--4697 []\T1/pcr/m/n/10 emod_api.demographics.demographics_utils\T1/ptm/m/n/10 , Overfull \hbox (30.6225pt too wide) in paragraph at lines 4697--4698 []\T1/pcr/m/n/10 emod_api.demographics.DemographicsGenerator\T1/ptm/m/n/10 , Overfull \hbox (72.6225pt too wide) in paragraph at lines 4698--4699 []\T1/pcr/m/n/10 emod_api.demographics.DemographicsInputDataParsers\T1/ptm/m/n/ 10 , Overfull \hbox (30.6225pt too wide) in paragraph at lines 4699--4700 []\T1/pcr/m/n/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 , Overfull \hbox (6.6225pt too wide) in paragraph at lines 4700--4701 []\T1/pcr/m/n/10 emod_api.demographics.grid_construction\T1/ptm/m/n/10 , Overfull \hbox (42.6225pt too wide) in paragraph at lines 4702--4703 []\T1/pcr/m/n/10 emod_api.demographics.PreDefinedDistributions\T1/ptm/m/n/10 , Overfull \hbox (42.6225pt too wide) in paragraph at lines 4703--4704 []\T1/pcr/m/n/10 emod_api.demographics.PropertiesAndAttributes\T1/ptm/m/n/10 , Overfull \hbox (0.6225pt too wide) in paragraph at lines 4707--4708 []\T1/pcr/m/n/10 emod_api.interventions.import_pressure\T1/ptm/m/n/10 , Overfull \hbox (0.6225pt too wide) in paragraph at lines 4709--4710 []\T1/pcr/m/n/10 emod_api.interventions.node_multiplier\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4711--4712 []\T1/pcr/m/n/10 emod_api.interventions.simple_vaccine\T1/ptm/m/n/10 , Overfull \hbox (6.6225pt too wide) in paragraph at lines 4718--4719 []\T1/pcr/m/n/10 emod_api.schema.dtk_post_process_schema\T1/ptm/m/n/10 , Overfull \hbox (0.6225pt too wide) in paragraph at lines 4722--4723 []\T1/pcr/m/n/10 emod_api.serialization.CensusAndModPop\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4723--4724 []\T1/pcr/m/n/10 emod_api.serialization.dtkFileSupport\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4725--4726 []\T1/pcr/m/n/10 emod_api.serialization.dtkFileUtility\T1/ptm/m/n/10 , Overfull \hbox (30.6225pt too wide) in paragraph at lines 4726--4727 []\T1/pcr/m/n/10 emod_api.serialization.SerializedPopulation\T1/ptm/m/n/10 , [55] (./institute-for-disease-modeling-emod-api.ind [56] Overfull \hbox (88.70953pt too wide) in paragraph at lines 8--10 []\T1/pcr/m/n/10 add() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Pr opertiesAndAttributes.IndividualProperties Underfull \hbox (badness 10000) in paragraph at lines 11--13 []\T1/pcr/m/n/10 add_migration_event() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-u le Overfull \hbox (148.70953pt too wide) in paragraph at lines 13--15 []\T1/pcr/m/n/10 add_parameter() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demog raphics.PropertiesAndAttributes.IndividualProperties Overfull \hbox (61.87129pt too wide) in paragraph at lines 15--17 []\T1/pcr/m/n/10 add_parameter() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demog raphics.Updateable.Updateable Underfull \hbox (badness 10000) in paragraph at lines 17--19 []\T1/pcr/m/n/10 AddAgeDependentTransmission() Overfull \hbox (34.06111pt too wide) in paragraph at lines 17--19 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 19--21 []\T1/pcr/m/n/10 AddIndividualPropertyAndHINT() Overfull \hbox (34.06111pt too wide) in paragraph at lines 19--21 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 21--23 []\T1/pcr/m/n/10 AgeStructureUNWPP() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (15.62103pt too wide) in paragraph at lines 21--23 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Overfull \hbox (7.30118pt too wide) in paragraph at lines 23--25 []\T1/pcr/m/n/10 AgesYears() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration .migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 25--26 []\T1/pcr/m/n/10 AIR \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.migrati on.Migration at- Overfull \hbox (37.49991pt too wide) in paragraph at lines 26--28 []\T1/pcr/m/n/10 append() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializatio n.dtkFileTools.DtkFile.Contents Overfull \hbox (32.4899pt too wide) in paragraph at lines 28--30 []\T1/pcr/m/n/10 append() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializatio n.dtkFileTools.DtkFile.Objects Underfull \hbox (badness 10000) in paragraph at lines 30--32 []\T1/pcr/m/n/10 application() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (7.95116pt too wide) in paragraph at lines 30--32 \T1/ptm/m/it/10 emod_api.config.dtk_post_process_adhocevents\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 32--34 []\T1/pcr/m/n/10 application() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (4.2412pt too wide) in paragraph at lines 32--34 \T1/ptm/m/it/10 emod_api.config.dtk_pre_process_adhocevents\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 34--36 []\T1/pcr/m/n/10 application() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 34--36 \T1/ptm/m/it/10 emod_api.config.dtk_pre_process_w5ml\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 36--38 []\T1/pcr/m/n/10 application() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 36--38 \T1/ptm/m/it/10 emod_api.schema.dtk_post_process_schema\T1/ptm/m/n/10 ), Overfull \hbox (85.96114pt too wide) in paragraph at lines 38--40 []\T1/pcr/m/n/10 apply_overlay() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demog raphics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 40--42 []\T1/pcr/m/n/10 apply_to_defaults_or_nodes() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 i n mod-ule Underfull \hbox (badness 10000) in paragraph at lines 40--42 \T1/ptm/m/it/10 emod_api.demographics.demographics_utils\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 42--44 []\T1/pcr/m/n/10 arcsec_to_deg() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (17.1711pt too wide) in paragraph at lines 42--44 \T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/ptm/m/n/10 ), Overfull \hbox (62.83089pt too wide) in paragraph at lines 44--46 []\T1/pcr/m/n/10 as_dataframe() \T1/ptm/m/n/10 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paragraph at lines 64--66 []\T1/pcr/m/n/10 birth_rate() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demograp hics.Node.Node Underfull \hbox (badness 10000) in paragraph at lines 66--68 []\T1/pcr/m/n/10 BroadcastEvent() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 68--70 []\T1/pcr/m/n/10 BroadcastEventToOtherNodes() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 i n mod-ule Overfull \hbox (23.59027pt too wide) in paragraph at lines 71--73 []\T1/pcr/m/n/10 byte_count() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializ ation.dtkFileTools.DtkFile Underfull \hbox (badness 7291) in paragraph at lines 76--78 []\T1/pcr/m/n/10 change_individual_property_at_age() \T1/ptm/m/n/10 (\T1/ptm/m/ it/10 in Underfull \hbox (badness 10000) in paragraph at lines 78--80 []\T1/pcr/m/n/10 change_ser_pop() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 78--80 \T1/ptm/m/it/10 emod_api.serialization.CensusAndModPop\T1/ptm/m/n/10 ), [57] Overfull \hbox (68.83089pt too wide) in paragraph at lines 81--83 []\T1/pcr/m/n/10 channel_names() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.chann elreports.channels.ChannelReport Underfull \hbox (badness 10000) in paragraph at lines 83--85 []\T1/pcr/m/n/10 ChannelReport \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Overfull \hbox (38.83089pt too wide) in paragraph at lines 85--87 []\T1/pcr/m/n/10 channels() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channelrep orts.channels.ChannelReport Overfull \hbox (29.59027pt too wide) in paragraph at lines 87--89 []\T1/pcr/m/n/10 chunk_count() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.seriali zation.dtkFileTools.DtkFile Overfull \hbox (29.59027pt too wide) in paragraph at lines 89--91 []\T1/pcr/m/n/10 chunk_sizes() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.seriali zation.dtkFileTools.DtkFile Overfull \hbox (36.91025pt too wide) in paragraph at lines 93--95 []\T1/pcr/m/n/10 compress() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializat 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lines 124--126 []\T1/pcr/m/n/10 datavalue_count() Underfull \hbox (badness 10000) in paragraph at lines 124--126 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.weather.weather.Metadata prop- Underfull \hbox (badness 10000) in paragraph at lines 126--128 []\T1/pcr/m/n/10 datavalue_count() Underfull \hbox (badness 10000) in paragraph at lines 126--128 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.weather.weather.Weather prop- Overfull \hbox (20.22127pt too wide) in paragraph at lines 128--130 []\T1/pcr/m/n/10 DatavalueCount() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migr ation.migration.Layer Overfull \hbox (37.30118pt too wide) in paragraph at lines 130--132 []\T1/pcr/m/n/10 DatavalueCount() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migr ation.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 132--134 []\T1/pcr/m/n/10 date() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serialization. dtkFileTools.DtkFile Overfull \hbox (19.30118pt too wide) in paragraph at lines 134--136 []\T1/pcr/m/n/10 DateCreated() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migrati on.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 136--138 []\T1/pcr/m/n/10 default_population Underfull \hbox (badness 10000) in paragraph at lines 136--138 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Node.Node at- Underfull \hbox (badness 7291) in paragraph at lines 138--140 []\T1/pcr/m/n/10 DefaultSusceptibilityDistribution() \T1/ptm/m/n/10 (\T1/ptm/m/ it/10 in Overfull \hbox (46.96086pt too wide) in paragraph at lines 138--140 \T1/ptm/m/it/10 mod-ule emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/ 10 ), Underfull \hbox (badness 10000) in paragraph at lines 140--142 []\T1/pcr/m/n/10 DelayedIntervention() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 142--144 []\T1/pcr/m/n/10 Demographics \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 142--144 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 144--146 []\T1/pcr/m/n/10 DemographicsGenerator \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Overfull \hbox (17.1711pt too wide) in paragraph at lines 144--146 \T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 146--148 []\T1/pcr/m/n/10 DemographicsOverlay \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 146--148 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 148--150 []\T1/pcr/m/n/10 DemographicsType \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Overfull \hbox (17.1711pt too wide) in paragraph at lines 148--150 \T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 150--152 []\T1/pcr/m/n/10 do_mapping_from_events() 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lines 164--166 []\T1/pcr/m/n/10 DtkFileV1 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 166--168 []\T1/pcr/m/n/10 DtkFileV2 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 168--170 []\T1/pcr/m/n/10 DtkFileV2.NodesV2 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 170--172 []\T1/pcr/m/n/10 DtkFileV3 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in [58] Underfull \hbox (badness 10000) in paragraph at lines 172--174 []\T1/pcr/m/n/10 DtkFileV3.NodesV3 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 174--176 []\T1/pcr/m/n/10 DtkFileV4 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 176--178 []\T1/pcr/m/n/10 DtkHeader \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 178--180 []\T1/pcr/m/n/10 duplicate_nodeID_check() 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emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 293--295 []\T1/pcr/m/n/10 examine_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 303--305 []\T1/pcr/m/n/10 fill_nodes_legacy() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (46.65079pt too wide) in paragraph at lines 303--305 \T1/ptm/m/it/10 emod_api.demographics.DemographicsInputDataParsers\T1/ptm/m/n/1 0 ), Overfull \hbox (4.62106pt too wide) in paragraph at lines 305--307 []\T1/pcr/m/n/10 finalize() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.schema_to_ class.ReadOnlyDict Overfull \hbox (36.30013pt too wide) in paragraph at lines 307--309 []\T1/pcr/m/n/10 find() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule emod_api.ser ialization.SerializedPopulation\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 309--311 []\T1/pcr/m/n/10 flattenConfig() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (81.59949pt too wide) in paragraph at lines 311--313 []\T1/pcr/m/n/10 flush() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serialization .SerializedPopulation.SerializedPopulation Underfull \hbox (badness 10000) in paragraph at lines 315--317 []\T1/pcr/m/n/10 from_csv() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 315--317 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 317--318 []\T1/pcr/m/n/10 from_csv() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 318--320 []\T1/pcr/m/n/10 from_data() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demograph ics.Node.Node Underfull \hbox (badness 10000) in paragraph at lines 320--322 []\T1/pcr/m/n/10 from_dataframe() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (17.1711pt too wide) in paragraph at lines 320--322 \T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/ptm/m/n/10 ), Overfull \hbox (16.1225pt too wide) in paragraph at lines 324--326 []\T1/pcr/m/n/10 from_demog_and_param_gravity_webservice() Overfull \hbox (122.1895pt too wide) in paragraph at lines 326--328 []\T1/pcr/m/n/10 from_dict() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demograph ics.PropertiesAndAttributes.IndividualAttributes Overfull \hbox (188.8387pt too wide) in paragraph at lines 328--330 []\T1/pcr/m/n/10 from_dict() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demograph ics.PropertiesAndAttributes.IndividualAttributes.AgeDistribution Overfull \hbox (211.16812pt too wide) in paragraph at lines 330--332 []\T1/pcr/m/n/10 from_dict() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demograph ics.PropertiesAndAttributes.IndividualAttributes.MortalityDistribution Overfull \hbox (102.18979pt too wide) in paragraph at lines 332--334 []\T1/pcr/m/n/10 from_dict() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demograph ics.PropertiesAndAttributes.NodeAttributes Underfull \hbox (badness 10000) in paragraph at lines 334--336 []\T1/pcr/m/n/10 from_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.weather.w eather.Metadata Underfull \hbox (badness 10000) in paragraph at lines 336--338 []\T1/pcr/m/n/10 from_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 336--338 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 338--340 []\T1/pcr/m/n/10 from_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (17.1711pt too wide) in paragraph at lines 338--340 \T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 340--341 []\T1/pcr/m/n/10 from_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 341--343 []\T1/pcr/m/n/10 from_params() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 341--343 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 343--344 []\T1/pcr/m/n/10 from_params() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 344--346 []\T1/pcr/m/n/10 from_pop_csv() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 344--346 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 346--348 []\T1/pcr/m/n/10 from_template_node() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 346--348 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 348--350 []\T1/pcr/m/n/10 FullRisk() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (15.62103pt too wide) in paragraph at lines 348--350 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Overfull \hbox (37.30118pt too wide) in paragraph at lines 353--355 []\T1/pcr/m/n/10 GenderDataType() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migr ation.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 355--357 []\T1/pcr/m/n/10 generate_demographics() Overfull \hbox (115.97037pt too wide) in paragraph at lines 355--357 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator.Dem ographicsGenerator Overfull \hbox (80.97084pt too wide) in paragraph at lines 357--359 []\T1/pcr/m/n/10 generate_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demog raphics.BaseInputFile.BaseInputFile Overfull \hbox (85.96114pt too wide) in paragraph at lines 359--361 []\T1/pcr/m/n/10 generate_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demog raphics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 361--363 []\T1/pcr/m/n/10 generate_headers() Overfull \hbox (29.07082pt too wide) in paragraph at lines 361--363 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.BaseInputFile.BaseInputFi le Underfull \hbox (badness 10000) in paragraph at lines 363--365 []\T1/pcr/m/n/10 generate_metadata() Overfull \hbox (115.97037pt too wide) in paragraph at lines 363--365 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator.Dem ographicsGenerator Overfull \hbox (173.87039pt too wide) in paragraph at lines 365--367 []\T1/pcr/m/n/10 generate_nodes() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demo graphics.DemographicsGenerator.DemographicsGenerator Underfull \hbox (badness 10000) in paragraph at lines 368--370 []\T1/pcr/m/n/10 get_bbox() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 368--370 \T1/ptm/m/it/10 emod_api.demographics.grid_construction\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 370--372 []\T1/pcr/m/n/10 get_class_with_defaults() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in m od-ule [60] Overfull \hbox (62.64088pt too wide) in paragraph at lines 372--374 \T1/ptm/m/it/10 mod-ule emod_api.config.default_from_schema_no_validation\T1/pt m/m/n/10 ), Overfull \hbox (45.42091pt too wide) in paragraph at lines 374--376 \T1/ptm/m/it/10 ule emod_api.config.default_from_schema_no_validation\T1/ptm/m/ n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 379--381 []\T1/pcr/m/n/10 get_fert_dist() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (15.62103pt too wide) in paragraph at lines 379--381 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 381--383 []\T1/pcr/m/n/10 get_grid_cell_id() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 381--383 \T1/ptm/m/it/10 emod_api.demographics.grid_construction\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 383--385 []\T1/pcr/m/n/10 get_next_individual_suid() Overfull \hbox (77.69946pt too wide) in paragraph at lines 383--385 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serialization.SerializedPopulation.Ser ializedPopulation Underfull \hbox (badness 10000) in paragraph at lines 385--387 []\T1/pcr/m/n/10 get_next_infection_suid() Overfull \hbox (77.69946pt too wide) in paragraph at lines 385--387 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serialization.SerializedPopulation.Ser ializedPopulation Overfull \hbox (55.96114pt too wide) in paragraph at lines 387--389 []\T1/pcr/m/n/10 get_node() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographi cs.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 389--391 []\T1/pcr/m/n/10 get_node_ids_from_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 389--391 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 391--393 []\T1/pcr/m/n/10 get_node_offsets() Underfull \hbox (badness 10000) in paragraph at lines 391--393 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 393--395 []\T1/pcr/m/n/10 get_node_pops_from_params() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 395--397 []\T1/pcr/m/n/10 get_parameters() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 395--397 \T1/ptm/m/it/10 emod_api.serialization.SerializedPopulation\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 397--398 []\T1/pcr/m/n/10 get_recv_trigger() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 399--400 []\T1/pcr/m/n/10 get_send_trigger() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 400--401 []\T1/pcr/m/n/10 get_trigger_list() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 401--403 []\T1/pcr/m/n/10 get_waning_from_params() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 403--405 []\T1/pcr/m/n/10 get_xpix_ypix() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (26.83089pt too wide) in paragraph at lines 409--411 []\T1/pcr/m/n/10 header() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channelrepor ts.channels.ChannelReport Underfull \hbox (badness 10000) in paragraph at lines 420--422 []\T1/pcr/m/n/10 id() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.spatialreports.s patial.SpatialNode Underfull \hbox (badness 7308) in paragraph at lines 422--423 []\T1/pcr/m/n/10 id() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.weather.weather. WeatherNode prop- Overfull \hbox (6.84114pt too wide) in paragraph at lines 423--425 []\T1/pcr/m/n/10 id_reference() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.weathe r.weather.Metadata Overfull \hbox (1.47115pt too wide) in paragraph at lines 425--427 []\T1/pcr/m/n/10 id_reference() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.weathe r.weather.Weather Underfull \hbox (badness 10000) in paragraph at lines 427--429 []\T1/pcr/m/n/10 IDREF_GRUMP1DEGREE Underfull \hbox (badness 10000) in paragraph at lines 427--429 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 429--431 []\T1/pcr/m/n/10 IDREF_GRUMP2PT5ARCMIN Underfull \hbox (badness 10000) in paragraph at lines 429--431 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 431--433 []\T1/pcr/m/n/10 IDREF_GRUMP30ARCSEC Underfull \hbox (badness 10000) in paragraph at lines 431--433 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.migration.Migration Overfull \hbox (13.30058pt too wide) in paragraph at lines 433--435 []\T1/pcr/m/n/10 IDREF_LEGACY \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migratio n.migration.Migration Overfull \hbox (19.30118pt too wide) in paragraph at lines 435--437 []\T1/pcr/m/n/10 IdReference() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migrati on.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 437--439 []\T1/pcr/m/n/10 IndividualAttributes \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Overfull \hbox (13.93057pt too wide) in paragraph at lines 437--439 \T1/ptm/m/it/10 emod_api.demographics.PropertiesAndAttributes\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 439--441 []\T1/pcr/m/n/10 IndividualAttributes.AgeDistribution Overfull \hbox (48.84009pt too wide) in paragraph at lines 439--441 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in emod_api.demographics.PropertiesAndAtt ributes\T1/ptm/m/n/10 ), Overfull \hbox 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(\T1/ptm/m/it/10 class in Overfull \hbox (13.93057pt too wide) in paragraph at lines 447--449 \T1/ptm/m/it/10 emod_api.demographics.PropertiesAndAttributes\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 449--451 []\T1/pcr/m/n/10 infer_natural_mortality() Overfull \hbox (34.06111pt too wide) in paragraph at lines 449--451 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 451--453 []\T1/pcr/m/n/10 init_resolution_from_file() Underfull \hbox (badness 10000) in paragraph at lines 451--453 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Node.Node class Underfull \hbox (badness 10000) in paragraph at lines 453--455 []\T1/pcr/m/n/10 InitAgeUniform() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (15.62103pt too wide) in paragraph at lines 453--455 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 455--457 []\T1/pcr/m/n/10 InitPrevUniform() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (15.62103pt too wide) in paragraph at lines 455--457 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), [61] Underfull \hbox (badness 10000) in paragraph at lines 457--459 []\T1/pcr/m/n/10 InitRiskExponential() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-u le Overfull \hbox (15.62103pt too wide) in paragraph at lines 457--459 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 459--461 []\T1/pcr/m/n/10 InitRiskLogNormal() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (15.62103pt too wide) in paragraph at lines 459--461 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 461--463 []\T1/pcr/m/n/10 InitRiskUniform() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (15.62103pt too wide) in paragraph at lines 461--463 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 463--465 []\T1/pcr/m/n/10 InitSusceptConstant() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-u le Overfull \hbox (15.62103pt too wide) in paragraph at lines 463--465 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 465--467 []\T1/pcr/m/n/10 InterpolationType() Underfull \hbox (badness 10000) in paragraph at lines 465--467 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.migration.Migration Overfull \hbox (20.8303pt too wide) in paragraph at lines 467--469 []\T1/pcr/m/n/10 interval() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.spatialrep orts.spatial.SpatialReport Overfull \hbox (13.30058pt too wide) in paragraph at lines 469--471 []\T1/pcr/m/n/10 INTERVENTION \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migratio n.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 476--478 []\T1/pcr/m/n/10 lat_lon_from_nodeid() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 479--481 []\T1/pcr/m/n/10 LINEAR_INTERPOLATION Underfull \hbox (badness 10000) in paragraph at lines 479--481 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 481--483 []\T1/pcr/m/n/10 load_default_config_as_rod() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 i n mod-ule Overfull \hbox (31.30106pt too wide) in paragraph at lines 481--483 \T1/ptm/m/it/10 emod_api.config.default_from_schema_no_validation\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 483--485 []\T1/pcr/m/n/10 LOCAL \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.migra tion.Migration Underfull \hbox (badness 10000) in paragraph at lines 486--488 []\T1/pcr/m/n/10 lon_lat_2_point() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 486--488 \T1/ptm/m/it/10 emod_api.demographics.grid_construction\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 491--493 []\T1/pcr/m/n/10 make_config_from_poi() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod- ule Underfull \hbox (badness 10000) in paragraph at lines 491--493 \T1/ptm/m/it/10 emod_api.config.from_poi_and_binary\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 493--495 []\T1/pcr/m/n/10 make_config_from_poi_and_config_dict() Overfull \hbox (16.3614pt too wide) in paragraph at lines 493--495 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule emod_api.config.from_poi_and_binary\ T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 495--497 []\T1/pcr/m/n/10 make_config_from_poi_and_config_file() Overfull \hbox (16.3614pt too wide) in paragraph at lines 495--497 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule emod_api.config.from_poi_and_binary\ T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 497--499 []\T1/pcr/m/n/10 make_config_from_poi_and_schema() \T1/ptm/m/n/10 (\T1/ptm/m/it /10 in Overfull \hbox (3.35153pt too wide) in paragraph at lines 497--499 \T1/ptm/m/it/10 mod-ule emod_api.config.from_poi_and_binary\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 499--500 []\T1/pcr/m/n/10 MALE \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.migrat ion.Migration at- Underfull \hbox (badness 10000) in paragraph at lines 503--504 []\T1/pcr/m/n/10 metadata() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.weather.we ather.Weather Overfull \hbox (31.30118pt too wide) in paragraph at lines 505--507 []\T1/pcr/m/n/10 MigrationType() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migra tion.migration.Migration Overfull \hbox (2.6225pt too wide) in paragraph at lines 513--514 []| \T1/pcr/m/n/10 emod_api.config.default_from_schema\T1/ptm/m/n/10 , Overfull \hbox (86.6225pt too wide) in paragraph at lines 514--515 []| \T1/pcr/m/n/10 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Underfull \hbox (badness 10000) in paragraph at lines 674--676 []\T1/pcr/m/n/10 REGIONAL \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.mi gration.Migration Overfull \hbox (56.83089pt too wide) in paragraph at lines 676--678 []\T1/pcr/m/n/10 report_type() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channel reports.channels.ChannelReport Overfull \hbox (25.71117pt too wide) in paragraph at lines 678--680 []\T1/pcr/m/n/10 report_type() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channel reports.channels.Header Overfull \hbox (74.83089pt too wide) in paragraph at lines 680--682 []\T1/pcr/m/n/10 report_version() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.chan nelreports.channels.ChannelReport Overfull \hbox (43.71117pt too wide) in paragraph at lines 682--684 []\T1/pcr/m/n/10 report_version() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.chan nelreports.channels.Header Overfull \hbox (4.77174pt too wide) in paragraph at lines 684--686 []\T1/pcr/m/n/10 res_in_degrees \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demogr aphics.Node.Node Underfull \hbox (badness 10000) in paragraph at lines 691--693 []\T1/pcr/m/n/10 SAME_FOR_BOTH_GENDERS Underfull \hbox (badness 10000) in paragraph at lines 691--693 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 694--696 []\T1/pcr/m/n/10 ScheduledCampaignEvent() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 696--698 []\T1/pcr/m/n/10 schema_to_config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 696--698 \T1/ptm/m/it/10 emod_api.config.from_poi_and_binary\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 698--700 []\T1/pcr/m/n/10 schema_to_config_subnode() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (31.30106pt too wide) in paragraph at lines 698--700 \T1/ptm/m/it/10 emod_api.config.default_from_schema_no_validation\T1/ptm/m/n/10 ), 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Underfull \hbox (badness 10000) in paragraph at lines 711--713 []\T1/pcr/m/n/10 set_demog_distributions() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in m od-ule Underfull \hbox (badness 10000) in paragraph at lines 711--713 \T1/ptm/m/it/10 emod_api.demographics.demographics_utils\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 713--715 []\T1/pcr/m/n/10 set_growing_demographics() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 713--715 \T1/ptm/m/it/10 emod_api.demographics.demographics_utils\T1/ptm/m/n/10 ), [64] Underfull \hbox (badness 10000) in paragraph at lines 715--717 []\T1/pcr/m/n/10 set_immune_mod() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 715--717 \T1/ptm/m/it/10 emod_api.demographics.demographics_utils\T1/ptm/m/n/10 ), Overfull \hbox (173.87039pt too wide) in paragraph at lines 717--719 []\T1/pcr/m/n/10 set_resolution() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demo graphics.DemographicsGenerator.DemographicsGenerator Underfull \hbox (badness 10000) in paragraph at lines 719--721 []\T1/pcr/m/n/10 set_risk_mod() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 719--721 \T1/ptm/m/it/10 emod_api.demographics.demographics_utils\T1/ptm/m/n/10 ), Overfull \hbox (16.62106pt too wide) in paragraph at lines 721--723 []\T1/pcr/m/n/10 set_schema() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.schema_t o_class.ReadOnlyDict Underfull \hbox (badness 10000) in paragraph at lines 724--726 []\T1/pcr/m/n/10 set_schema() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 724--726 \T1/ptm/m/it/10 emod_api.config.from_poi_and_binary\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 726--728 []\T1/pcr/m/n/10 set_static_demographics() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in m od-ule Underfull \hbox (badness 10000) in paragraph at lines 726--728 \T1/ptm/m/it/10 emod_api.demographics.demographics_utils\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 728--730 []\T1/pcr/m/n/10 SetAgeDistribution() Overfull \hbox (34.06111pt too wide) in paragraph at lines 728--730 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Overfull \hbox (79.96114pt too wide) in paragraph at lines 730--732 []\T1/pcr/m/n/10 SetBirthRate() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demogr aphics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 732--734 []\T1/pcr/m/n/10 SetConstantRisk() Overfull \hbox (34.06111pt too wide) in paragraph at lines 732--734 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 734--736 []\T1/pcr/m/n/10 SetConstantSusceptibility() Overfull \hbox (34.06111pt too wide) in paragraph at lines 734--736 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 736--738 []\T1/pcr/m/n/10 SetDefaultFromTemplate() Overfull \hbox (34.06111pt too wide) in paragraph at lines 736--738 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 738--740 []\T1/pcr/m/n/10 SetDefaultIndividualAttributes() Overfull \hbox (34.06111pt too wide) in paragraph at lines 738--740 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 740--742 []\T1/pcr/m/n/10 SetDefaultIndividualProperties() Overfull \hbox (34.06111pt too wide) in paragraph at lines 740--742 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 742--744 []\T1/pcr/m/n/10 SetDefaultNodeAttributes() Overfull \hbox (34.06111pt too wide) in paragraph at lines 742--744 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 744--746 []\T1/pcr/m/n/10 SetDefaultProperties() Overfull \hbox (34.06111pt too wide) in paragraph at lines 744--746 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 746--748 []\T1/pcr/m/n/10 SetDefaultPropertiesFertMort() Overfull \hbox (34.06111pt too wide) in paragraph at lines 746--748 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Overfull \hbox (34.1225pt too wide) in paragraph at lines 748--750 []\T1/pcr/m/n/10 SetEquilibriumAgeDistFromBirthAndMortRates() Overfull \hbox (34.06111pt too wide) in paragraph at lines 748--750 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 750--752 []\T1/pcr/m/n/10 SetHeteroRiskExponDist() Overfull \hbox (34.06111pt too wide) in paragraph at lines 750--752 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 752--754 []\T1/pcr/m/n/10 SetHeteroRiskLognormalDist() Overfull \hbox (34.06111pt too wide) in paragraph at lines 752--754 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 754--756 []\T1/pcr/m/n/10 SetHeteroRiskUniformDist() Overfull \hbox (34.06111pt too wide) in paragraph at lines 754--756 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 756--758 []\T1/pcr/m/n/10 SetIndividualAttributesWithFertMort() Overfull \hbox (34.06111pt too wide) in paragraph at lines 756--758 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 758--760 []\T1/pcr/m/n/10 SetInitialAgeExponential() Overfull \hbox (34.06111pt too wide) in paragraph at lines 758--760 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 760--762 []\T1/pcr/m/n/10 SetInitialAgeLikeSubSaharanAfrica() Overfull \hbox (34.06111pt too wide) in paragraph at lines 760--762 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 762--764 []\T1/pcr/m/n/10 SetInitPrevFromUniformDraw() Overfull \hbox (34.06111pt too wide) in paragraph at lines 762--764 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 764--766 []\T1/pcr/m/n/10 SetMinimalNodeAttributes() Overfull \hbox (34.06111pt too wide) in paragraph at lines 764--766 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 766--768 []\T1/pcr/m/n/10 SetMortalityDistribution() Overfull \hbox (34.06111pt too wide) in paragraph at lines 766--768 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 768--770 []\T1/pcr/m/n/10 SetMortalityRate() Overfull \hbox (34.06111pt too wide) in paragraph at lines 768--770 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 770--772 []\T1/pcr/m/n/10 SetNodeDefaultFromTemplate() Overfull \hbox (34.06111pt too wide) in paragraph at lines 770--772 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 772--774 []\T1/pcr/m/n/10 SetOverdispersion() Overfull \hbox (34.06111pt too wide) in paragraph at lines 772--774 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 774--776 []\T1/pcr/m/n/10 SimpleSusceptibilityDistribution() \T1/ptm/m/n/10 (\T1/ptm/m/i t/10 in Overfull \hbox (46.96086pt too wide) in paragraph at lines 774--776 \T1/ptm/m/it/10 mod-ule emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/ 10 ), Overfull \hbox (34.70026pt too wide) in paragraph at lines 776--778 []\T1/pcr/m/n/10 simulation() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializ ation.dtkFileTools.DtkFileV1 Overfull \hbox (34.70026pt too wide) in paragraph at lines 778--780 []\T1/pcr/m/n/10 simulation() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializ ation.dtkFileTools.DtkFileV2 Overfull \hbox (34.70026pt too wide) in paragraph at lines 780--782 []\T1/pcr/m/n/10 simulation() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializ ation.dtkFileTools.DtkFileV3 Overfull \hbox (2.94016pt too wide) in paragraph at lines 782--783 []\T1/pcr/m/n/10 Snappy \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in emod_api.seria lization.dtkFileSupport\T1/ptm/m/n/10 ), Underfull 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[]\T1/pcr/m/n/10 STATIC \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.D emographicsGenerator.DemographicsType Overfull \hbox (44.83089pt too wide) in paragraph at lines 796--798 []\T1/pcr/m/n/10 step_size() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channelre ports.channels.ChannelReport Overfull \hbox (13.71117pt too wide) in paragraph at lines 798--800 []\T1/pcr/m/n/10 step_size() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channelre ports.channels.Header Underfull \hbox (badness 10000) in paragraph at lines 800--802 []\T1/pcr/m/n/10 StepFunctionSusceptibility() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 i n mod-ule Overfull \hbox (15.62103pt too wide) in paragraph at lines 800--802 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Overfull \hbox (50.83089pt too wide) in paragraph at lines 807--809 []\T1/pcr/m/n/10 time_stamp() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channelr eports.channels.ChannelReport Overfull \hbox (19.71117pt too wide) in paragraph at lines 809--811 []\T1/pcr/m/n/10 time_stamp() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channelr eports.channels.Header Overfull \hbox (32.8303pt too wide) in paragraph at lines 811--813 []\T1/pcr/m/n/10 time_steps() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.spatialr eports.spatial.SpatialReport Underfull \hbox (badness 5741) in paragraph at lines 813--815 []\T1/pcr/m/n/10 title() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channelreport s.channels.Channel Overfull \hbox (82.17072pt too wide) in paragraph at lines 816--818 []\T1/pcr/m/n/10 to_dict() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographic s.Demographics.DemographicsOverlay Underfull \hbox (badness 10000) in paragraph at lines 818--819 []\T1/pcr/m/n/10 to_dict() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographic s.Node.Node Overfull \hbox (110.1895pt too wide) in paragraph at lines 819--821 []\T1/pcr/m/n/10 to_dict() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographic s.PropertiesAndAttributes.IndividualAttributes Overfull \hbox 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s.PropertiesAndAttributes.IndividualProperty Overfull \hbox (90.18979pt too wide) in paragraph at lines 831--833 []\T1/pcr/m/n/10 to_dict() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographic s.PropertiesAndAttributes.NodeAttributes Overfull \hbox (25.87129pt too wide) in paragraph at lines 833--835 []\T1/pcr/m/n/10 to_dict() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographic s.Updateable.Updateable Overfull \hbox (82.17072pt too wide) in paragraph at lines 835--837 []\T1/pcr/m/n/10 to_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographic s.Demographics.DemographicsOverlay Underfull \hbox (badness 10000) in paragraph at lines 841--842 []\T1/pcr/m/n/10 to_tuple() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographi cs.Node.Node Underfull \hbox (badness 10000) in paragraph at lines 842--844 []\T1/pcr/m/n/10 Tool() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.migr ation.Migration Underfull \hbox (badness 10000) in paragraph at lines 844--846 []\T1/pcr/m/n/10 tool() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serialization. dtkFileTools.DtkFile Underfull \hbox (badness 10000) in paragraph at lines 848--850 []\T1/pcr/m/n/10 TriggeredCampaignEvent() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule Overfull \hbox (48.91025pt too wide) in paragraph at lines 853--855 []\T1/pcr/m/n/10 uncompress() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializ ation.dtkFileSupport.EllZeeFour Overfull \hbox (33.29066pt too wide) in paragraph at lines 855--857 []\T1/pcr/m/n/10 uncompress() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializ ation.dtkFileSupport.Snappy Overfull \hbox (62.91016pt too wide) in paragraph at lines 857--859 []\T1/pcr/m/n/10 uncompress() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializ ation.dtkFileSupport.Uncompressed Underfull \hbox (badness 10000) in paragraph at lines 859--861 []\T1/pcr/m/n/10 uncompress() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 861--863 []\T1/pcr/m/n/10 Uncompressed \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 5741) in paragraph at lines 863--865 []\T1/pcr/m/n/10 units() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channelreport s.channels.Channel Overfull \hbox (19.87129pt too wide) in paragraph at lines 865--867 []\T1/pcr/m/n/10 update() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics .Updateable.Updateable Underfull \hbox (badness 10000) in paragraph at lines 867--869 []\T1/pcr/m/n/10 update_resolution() Underfull \hbox (badness 10000) in paragraph at lines 867--869 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.weather.weather.Metadata prop- Underfull \hbox (badness 10000) in paragraph at lines 869--871 []\T1/pcr/m/n/10 update_resolution() Underfull \hbox (badness 10000) in paragraph at lines 869--871 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.weather.weather.Weather prop- Underfull \hbox (badness 10000) in paragraph at lines 871--872 []\T1/pcr/m/n/10 Updateable \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 875--877 []\T1/pcr/m/n/10 validate_res_in_arcsec() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule Overfull \hbox (17.1711pt too wide) in paragraph at lines 875--877 \T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/ptm/m/n/10 ), Overfull \hbox (5.59027pt too wide) in paragraph at lines 877--879 []\T1/pcr/m/n/10 version() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializati on.dtkFileTools.DtkFile Overfull \hbox (81.59949pt too wide) in paragraph at lines 884--886 []\T1/pcr/m/n/10 write() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serialization .SerializedPopulation.SerializedPopulation Underfull \hbox (badness 10000) in paragraph at lines 886--887 []\T1/pcr/m/n/10 write() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 887--889 []\T1/pcr/m/n/10 write_config_from_default_and_params() Overfull \hbox (75.65076pt too wide) in paragraph at lines 887--889 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule 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(rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc}< /usr/share/texlive/texmf-dist/fonts/type1/urw/courier/ucrr8a.pfb>< /usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmri8a.pfb> Output written on institute-for-disease-modeling-emod-api.pdf (71 pages, 305151 bytes). Transcript written on institute-for-disease-modeling-emod-api.log. Latexmk: Index file 'institute-for-disease-modeling-emod-api.idx' was written Latexmk: References changed. 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CrudeBirthRate=0.04\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Crude-Mor - Underfull \hbox (badness 10000) in paragraph at lines 1143--1143 []\T1/ptm/m/it/10 file_male\T1/ptm/m/n/10 , \T1/ptm/m/it/10 file_female\T1/ptm/ m/n/10 , \T1/ptm/m/it/10 in-ter-val_fit=[1970, 1980]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1155--1155 []\T1/ptm/m/it/10 nodes=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1155--1155 \T1/ptm/m/it/10 meta_data: [][]dict[][] Overfull \hbox (7.52411pt too wide) in paragraph at lines 1155--1155 \T1/ptm/m/it/10 ual_attributes=None\T1/ptm/m/n/10 , Overfull \hbox (14.18416pt too wide) in paragraph at lines 1155--1155 \T1/ptm/m/it/10 node_attributes=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1155--1155 \T1/ptm/m/it/10 mor-tal- Overfull \hbox (16.5839pt too wide) in paragraph at lines 1155--1155 \T1/ptm/m/it/10 ity_distribution=None\T1/pcr/m/n/10 ) [14] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pcr.fd) Overfull \hbox (18.60422pt too wide) in paragraph at lines 1216--1216 []\T1/ptm/m/it/10 res_in_arcsec\T1/pcr/m/n/10 ) Overfull \hbox (13.07484pt too wide) in paragraph at lines 1235--1235 []\T1/ptm/m/it/10 nodes\T1/ptm/m/n/10 , Overfull \hbox (5.01491pt too wide) in paragraph at lines 1235--1235 \T1/ptm/m/it/10 con- Overfull \hbox (12.23463pt too wide) in paragraph at lines 1235--1235 \T1/ptm/m/it/10 cerns: Overfull \hbox (2.79494pt too wide) in paragraph at lines 1235--1235 \T1/ptm/m/it/10 Op- Overfull \hbox (457.54115pt too wide) in paragraph at lines 1235--1235 \T1/ptm/m/it/10 tional[Union[emod_api.dtk_tools.demographics.DemographicsGenera torConcern.DemographicsGeneratorConcern, Overfull \hbox (429.49101pt too wide) in paragraph at lines 1235--1235 \T1/ptm/m/it/10 List[emod_api.dtk_tools.demographics.DemographicsGeneratorConce rn.DemographicsGeneratorConcern]]] Underfull \hbox (badness 10000) in paragraph at lines 1235--1235 \T1/ptm/m/it/10 = Overfull \hbox (10.85487pt too wide) in paragraph at lines 1235--1235 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (84.4637pt too wide) in paragraph at lines 1235--1235 \T1/ptm/m/it/10 res_in_arcsec=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 custom\TS1/ptm/ m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (115.46402pt too wide) in paragraph at lines 1235--1235 \T1/ptm/m/it/10 node_id_from_lat_long=False\T1/pcr/m/n/10 ) [15] Underfull \hbox (badness 10000) in paragraph at lines 1320--1320 []\T1/ptm/m/it/10 df\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-mo-graph- Underfull \hbox (badness 10000) in paragraph at lines 1320--1320 \T1/ptm/m/it/10 ics_filename: Op- Underfull \hbox (badness 10000) in paragraph at lines 1320--1320 \T1/ptm/m/it/10 tional[[][]str[][]] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1320--1320 \T1/ptm/m/it/10 con-cerns: Op- Overfull \hbox (379.54115pt too wide) in paragraph at lines 1320--1320 \T1/ptm/m/it/10 tional[Union[emod_api.dtk_tools.demographics.DemographicsGenera torConcern.DemographicsGeneratorConcern, Overfull \hbox (351.49101pt too wide) in paragraph at lines 1320--1320 \T1/ptm/m/it/10 List[emod_api.dtk_tools.demographics.DemographicsGeneratorConce rn.DemographicsGeneratorConcern]]] Underfull \hbox (badness 10000) in paragraph at lines 1320--1320 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Overfull \hbox (6.4637pt too wide) in paragraph at lines 1320--1320 \T1/ptm/m/it/10 res_in_arcsec=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 custom\TS1/ptm/ m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (30.83415pt too wide) in paragraph at lines 1320--1320 \T1/ptm/m/it/10 node_id_from_lat_long=True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1320--1320 \T1/ptm/m/it/10 de-fault_population: Underfull \hbox (badness 10000) in paragraph at lines 1320--1320 [][]\T1/ptm/m/it/10 int[][] = 1000\T1/ptm/m/n/10 , Overfull \hbox (79.21327pt too wide) in paragraph at lines 1320--1320 \T1/ptm/m/it/10 load_other_columns_as_attributes=False\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1320--1320 \T1/ptm/m/it/10 tional[List[[][]str[][]]] Underfull \hbox (badness 10000) in paragraph at lines 1320--1320 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ex- Underfull \hbox (badness 10000) in paragraph at lines 1320--1320 \T1/ptm/m/it/10 clude_columns: Underfull \hbox (badness 10000) in paragraph at lines 1320--1320 \T1/ptm/m/it/10 Op-tional[List[[][]str[][]]] Underfull \hbox (badness 10000) in paragraph at lines 1320--1320 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Overfull \hbox (0.89452pt too wide) in paragraph at lines 1320--1320 \T1/ptm/m/it/10 nodeid_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1320--1320 \T1/ptm/m/it/10 Op-tional[[][]str[][]] Underfull \hbox (badness 10000) in paragraph at lines 1320--1320 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lat-i- Underfull \hbox (badness 10000) in paragraph at lines 1320--1320 \T1/ptm/m/it/10 tude_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1320--1320 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 lat\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lon-gi- Underfull \hbox (badness 10000) in paragraph at lines 1320--1320 \T1/ptm/m/it/10 tude_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1320--1320 \T1/ptm/m/it/10 tion_column_name: [16] Overfull \hbox (54.94496pt too wide) in paragraph at lines 1335--1336 []\T1/pcr/b/n/10 apply. If not specified, we use the DefaultWorldBankEquilibriu mConcern Underfull \hbox (badness 10000) in paragraph at lines 1383--1383 []\T1/ptm/m/it/10 population_input_file: Underfull \hbox (badness 10000) in paragraph at lines 1383--1383 [][]\T1/ptm/m/it/10 str[][]\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-mo-graph- Underfull \hbox (badness 7851) in paragraph at lines 1383--1383 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 con-cerns: Op- Overfull \hbox (349.54115pt too wide) in paragraph at lines 1383--1383 \T1/ptm/m/it/10 tional[Union[emod_api.dtk_tools.demographics.DemographicsGenera torConcern.DemographicsGeneratorConcern, Overfull \hbox (321.49101pt too wide) in paragraph at lines 1383--1383 \T1/ptm/m/it/10 List[emod_api.dtk_tools.demographics.DemographicsGeneratorConce rn.DemographicsGeneratorConcern]]] Underfull \hbox (badness 10000) in paragraph at lines 1383--1383 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1383--1383 \T1/ptm/m/it/10 res_in_arcsec=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 custom\TS1/ptm/ m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (0.83415pt too wide) in paragraph at lines 1383--1383 \T1/ptm/m/it/10 node_id_from_lat_long=True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1383--1383 \T1/ptm/m/it/10 de-fault_population: Underfull \hbox (badness 10000) in paragraph at lines 1383--1383 [][]\T1/ptm/m/it/10 int[][] = 1000\T1/ptm/m/n/10 , Overfull \hbox (49.21327pt too wide) in paragraph at lines 1383--1383 \T1/ptm/m/it/10 load_other_columns_as_attributes=False\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1383--1383 \T1/ptm/m/it/10 in-clude_columns: Op- Underfull \hbox (badness 10000) in paragraph at lines 1383--1383 \T1/ptm/m/it/10 tional[List[[][]str[][]]] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1383--1383 \T1/ptm/m/it/10 ex-clude_columns: Op- Underfull \hbox (badness 10000) in paragraph at lines 1383--1383 \T1/ptm/m/it/10 tional[List[[][]str[][]]] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1383--1383 \T1/ptm/m/it/10 nodeid_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1383--1383 \T1/ptm/m/it/10 Op-tional[[][]str[][]] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1383--1383 \T1/ptm/m/it/10 lat-i-tude_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1383--1383 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 lat\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lon-gi- Underfull \hbox (badness 10000) in paragraph at lines 1383--1383 \T1/ptm/m/it/10 tude_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1383--1383 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 lon\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pop-u-la- Underfull \hbox (badness 6236) in paragraph at lines 1383--1383 \T1/ptm/m/it/10 tion_column_name: [][]str[][] = [17] Overfull \hbox (54.94496pt too wide) in paragraph at lines 1398--1399 []\T1/pcr/b/n/10 apply. If not specified, we use the DefaultWorldBankEquilibriu mConcern [18] Overfull \hbox (6.3048pt too wide) in paragraph at lines 1454--1454 []\T1/ptm/m/it/10 lat\T1/ptm/m/n/10 , Overfull \hbox (13.5249pt too wide) in paragraph at lines 1454--1454 \T1/ptm/m/it/10 long\T1/ptm/m/n/10 , Overfull \hbox (115.34473pt too wide) in paragraph at lines 1454--1454 \T1/ptm/m/it/10 res=0.008333333333333333\T1/pcr/m/n/10 ) Overfull \hbox (37.09444pt too wide) in paragraph at lines 1460--1460 []\T1/ptm/m/it/10 nodelist\T1/pcr/m/n/10 ) Overfull \hbox (11.74474pt too wide) in paragraph at lines 1466--1466 []\T1/ptm/m/it/10 node_info\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1466--1466 \T1/ptm/m/it/10 De- Underfull \hbox (badness 10000) in paragraph at lines 1466--1466 \T1/ptm/m/it/10 moDf\T1/ptm/m/n/10 , Overfull \hbox (91.34473pt too wide) in paragraph at lines 1466--1466 \T1/ptm/m/it/10 res=0.008333333333333333\T1/pcr/m/n/10 ) Overfull \hbox (71.74474pt too wide) in paragraph at lines 1472--1472 []\T1/ptm/m/it/10 node_info\T1/ptm/m/n/10 , Overfull \hbox (41.2549pt too wide) in paragraph at lines 1472--1472 \T1/ptm/m/it/10 ex- Overfull \hbox (118.90427pt too wide) in paragraph at lines 1472--1472 \T1/ptm/m/it/10 tra_data_columns=[]\T1/ptm/m/n/10 , Overfull \hbox (151.34473pt too wide) in paragraph at lines 1472--1472 \T1/ptm/m/it/10 res=0.008333333333333333\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1512--1514 []\T1/ptm/m/n/10 json ob-ject aka python dict that can be di-rectly passed to D e-mo-graph- Underfull \hbox (badness 10000) in paragraph at lines 1525--1525 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1525--1525 \T1/ptm/m/it/10 mean=0.0\T1/ptm/m/n/10 , [19] Underfull \hbox (badness 10000) in paragraph at lines 1537--1539 []\T1/ptm/m/n/10 json ob-ject aka python dict that can be di-rectly passed to D e-mo-graph- Underfull \hbox (badness 10000) in paragraph at lines 1550--1550 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1556--1558 []\T1/ptm/m/n/10 json ob-ject aka python dict that can be di-rectly passed to D e-mo-graph- Underfull \hbox (badness 10000) in paragraph at lines 1588--1588 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , \T1/ptm/m/it/10 low_prev\T1/ptm/m/n/10 , Underfull \hbox (badness 5091) in paragraph at lines 1588--1588 \T1/ptm/m/it/10 high_prev\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-scrip- Overfull \hbox (22.30493pt too wide) in paragraph at lines 1600--1600 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Overfull \hbox (7.6847pt too wide) in paragraph at lines 1600--1600 \T1/ptm/m/it/10 set- Overfull \hbox (34.0548pt too wide) in paragraph at lines 1600--1600 \T1/ptm/m/it/10 ting=1.0\T1/pcr/m/n/10 ) Overfull \hbox (10.30493pt too wide) in paragraph at lines 1606--1606 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1606--1606 \T1/ptm/m/it/10 pro- Overfull \hbox (58.54413pt too wide) in paragraph at lines 1606--1606 \T1/ptm/m/it/10 tected_setting=0.0\T1/ptm/m/n/10 , Overfull \hbox (9.20457pt too wide) in paragraph at lines 1606--1606 \T1/ptm/m/it/10 thresh- Overfull \hbox (53.51486pt too wide) in paragraph at lines 1606--1606 \T1/ptm/m/it/10 old_age=1825.0\T1/pcr/m/n/10 ) Overfull \hbox (46.30493pt too wide) in paragraph at lines 1612--1612 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Overfull \hbox (42.23488pt too wide) in paragraph at lines 1612--1612 \T1/ptm/m/it/10 mean- Overfull \hbox (44.91478pt too wide) in paragraph at lines 1612--1612 \T1/ptm/m/it/10 AgeAt- Overfull \hbox (28.90492pt too wide) in paragraph at lines 1612--1612 \T1/ptm/m/it/10 In- Overfull \hbox (32.23474pt too wide) in paragraph at lines 1612--1612 \T1/ptm/m/it/10 fec- Overfull \hbox (58.0548pt too wide) in paragraph at lines 1612--1612 \T1/ptm/m/it/10 tion=2.5\T1/pcr/m/n/10 ) Overfull \hbox (55.80493pt too wide) in paragraph at lines 1618--1618 []\T1/ptm/m/it/10 demog\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1624--1624 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1624--1624 \T1/ptm/m/it/10 age_bins\T1/ptm/m/n/10 , [20] Overfull \hbox (25.80493pt too wide) in paragraph at lines 1646--1646 []\T1/ptm/m/it/10 demog\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1664--1665 []\T1/pcr/b/n/10 "15-19", etc. up to "45-49", and a column named "Years" with Overfull \hbox (64.51184pt too wide) in paragraph at lines 1696--1696 [][]\T1/ptm/m/n/10 emod_api.demographics.PropertiesAndAttributes.IndividualAttr ibutes[][] Underfull \hbox (badness 10000) in paragraph at lines 1696--1696 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in-di-vid-ual_properties : Overfull \hbox (65.26187pt too wide) in paragraph at lines 1696--1696 [][]\T1/ptm/m/n/10 emod_api.demographics.PropertiesAndAttributes.IndividualProp erties[][] Underfull \hbox (badness 10000) in paragraph at lines 1696--1696 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 node_attributes: Overfull \hbox (45.31218pt too wide) in paragraph at lines 1696--1696 [][]\T1/ptm/m/n/10 emod_api.demographics.PropertiesAndAttributes.NodeAttributes [][] [21] Overfull \hbox (22.9045pt too wide) in paragraph at lines 1790--1790 []\T1/ptm/m/it/10 nodeid\T1/ptm/m/n/10 , \T1/ptm/m/it/10 res_in_deg=0.041666666 666666664\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1796--1796 []\T1/ptm/m/it/10 lat\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lon\T1/ptm/m/n/10 , Overfull \hbox (9.16464pt too wide) in paragraph at lines 1796--1796 \T1/ptm/m/it/10 res_in_deg=0.041666666666666664\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1802--1802 []\T1/ptm/m/it/10 lat\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lon\T1/ptm/m/n/10 , Overfull \hbox (59.95372pt too wide) in paragraph at lines 1826--1826 []\T1/ptm/m/it/10 initial_distribution: Overfull \hbox (21.8143pt too wide) in paragraph at lines 1826--1826 \T1/ptm/m/it/10 List[[][]float[][]] Underfull \hbox (badness 10000) in paragraph at lines 1826--1826 \T1/ptm/m/it/10 = Overfull \hbox (4.85487pt too wide) in paragraph at lines 1826--1826 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (3.0149pt too wide) in paragraph at lines 1826--1826 \T1/ptm/m/it/10 prop- Overfull \hbox (27.15454pt too wide) in paragraph at lines 1826--1826 \T1/ptm/m/it/10 erty=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1826--1826 \T1/ptm/m/it/10 val- Underfull \hbox (badness 10000) in paragraph at lines 1826--1826 \T1/ptm/m/it/10 ues: Overfull \hbox (21.8143pt too wide) in paragraph at lines 1826--1826 \T1/ptm/m/it/10 List[[][]float[][]] Underfull \hbox (badness 10000) in paragraph at lines 1826--1826 \T1/ptm/m/it/10 = Overfull \hbox (4.85487pt too wide) in paragraph at lines 1826--1826 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (1.09485pt too wide) in paragraph at lines 1826--1826 \T1/ptm/m/it/10 tran- Underfull \hbox (badness 10000) in paragraph at lines 1826--1826 \T1/ptm/m/it/10 si- Overfull \hbox (4.02464pt too wide) in paragraph at lines 1826--1826 \T1/ptm/m/it/10 tions: Overfull \hbox (21.8143pt too wide) in paragraph at lines 1826--1826 \T1/ptm/m/it/10 List[[][]float[][]] Underfull \hbox (badness 10000) in paragraph at lines 1826--1826 \T1/ptm/m/it/10 = Overfull \hbox (4.85487pt too wide) in paragraph at lines 1826--1826 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (4.98474pt too wide) in paragraph at lines 1826--1826 \T1/ptm/m/it/10 trans- Underfull \hbox (badness 10000) in paragraph at lines 1826--1826 \T1/ptm/m/it/10 mis- Overfull \hbox (32.35434pt too wide) in paragraph at lines 1826--1826 \T1/ptm/m/it/10 sion_matrix: Overfull \hbox (21.8143pt too wide) in paragraph at lines 1826--1826 \T1/ptm/m/it/10 List[[][]float[][]] Underfull \hbox (badness 10000) in paragraph at lines 1826--1826 \T1/ptm/m/it/10 = Overfull \hbox (8.35487pt too wide) in paragraph at lines 1826--1826 \T1/ptm/m/it/10 None\T1/pcr/m/n/10 ) Overfull \hbox (76.12407pt too wide) in paragraph at lines 1840--1840 []\T1/ptm/m/it/10 individual_property: Overfull \hbox (269.15215pt too wide) in paragraph at lines 1840--1840 [][]\T1/ptm/m/n/10 emod_api.demographics.PropertiesAndAttributes.IndividualProp erty[][] Underfull \hbox (badness 10000) in paragraph at lines 1840--1840 \T1/ptm/m/it/10 = Overfull \hbox (20.35487pt too wide) in paragraph at lines 1840--1840 \T1/ptm/m/it/10 None\T1/pcr/m/n/10 ) [22] Overfull \hbox (109.22414pt too wide) in paragraph at lines 1871--1871 []\T1/ptm/m/it/10 age_distribution_flag=None\T1/ptm/m/n/10 , Overfull \hbox (94.32413pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 age_distribution1=None\T1/ptm/m/n/10 , Overfull \hbox (94.32413pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 age_distribution2=None\T1/ptm/m/n/10 , Overfull \hbox (89.32413pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 age_distribution=None\T1/ptm/m/n/10 , Overfull \hbox (18.82483pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 preva- Overfull \hbox (116.0839pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 lence_distribution_flag=None\T1/ptm/m/n/10 , Overfull \hbox (18.82483pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 preva- Overfull \hbox (101.18388pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 lence_distribution1=None\T1/ptm/m/n/10 , Overfull \hbox (18.82483pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 preva- Overfull \hbox (101.18388pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 lence_distribution2=None\T1/ptm/m/n/10 , Overfull \hbox (6.57483pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 im- Overfull \hbox (8.79494pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 mu- Overfull \hbox (109.9839pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 nity_distribution_flag=None\T1/ptm/m/n/10 , Overfull \hbox (6.57483pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 im- Overfull \hbox (8.79494pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 mu- Overfull \hbox (95.0839pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 nity_distribution1=None\T1/ptm/m/n/10 , Overfull \hbox (6.57483pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 im- Overfull \hbox (8.79494pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 mu- Overfull \hbox (95.0839pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 nity_distribution2=None\T1/ptm/m/n/10 , Overfull \hbox (109.9838pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 risk_distribution_flag=None\T1/ptm/m/n/10 , Overfull \hbox (95.08379pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 risk_distribution1=None\T1/ptm/m/n/10 , Overfull \hbox (95.08379pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 risk_distribution2=None\T1/ptm/m/n/10 , Overfull \hbox (6.57483pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 mi- Overfull \hbox (10.31496pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 gra- Overfull \hbox (169.32329pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 tion_heterogeneity_distribution_flag=None\T1/ptm/m/n/10 , Overfull \hbox (6.57483pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 mi- Overfull \hbox (10.31496pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 gra- Overfull \hbox (154.42328pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 tion_heterogeneity_distribution1=None\T1/ptm/m/n/10 , Overfull \hbox (6.57483pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 mi- Overfull \hbox (10.31496pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 gra- Overfull \hbox (154.42328pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 tion_heterogeneity_distribution2=None\T1/ptm/m/n/10 , Overfull \hbox (12.48488pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 mor- Overfull \hbox (7.13475pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 tal- Overfull \hbox (85.0839pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 ity_distribution=None\T1/ptm/m/n/10 , Overfull \hbox (9.35475pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 sus- Overfull \hbox (10.45485pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 cep- Overfull \hbox (2.13475pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 ti- Overfull \hbox (7.13475pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 bil- Overfull \hbox (88.5839pt too wide) in paragraph at lines 1871--1871 \T1/ptm/m/it/10 ity_distribution=None\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1876--1876 []\T1/ptm/m/it/10 distribution_values: List[[][]float[][]] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 1890--1890 []\T1/ptm/m/it/10 distribution_values=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-s ult_scale_factor=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- [23] Underfull \hbox (badness 10000) in paragraph at lines 1910--1910 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 axis_units=None\T1/ptm/m /n/10 , \T1/ptm/m/it/10 num_distribution_axes=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1910--1910 \T1/ptm/m/it/10 pop-u-la-tion_groups=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-su lt_scale_factor=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 []\T1/ptm/m/it/10 airport: Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 [][]\T1/ptm/m/it/10 int[][] = Overfull \hbox (4.8247pt too wide) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 tude=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Overfull \hbox (0.98447pt too wide) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 birth_rate: Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 [][]\T1/ptm/m/it/10 float[][] = Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 coun- Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 try=None\T1/ptm/m/n/10 , Overfull \hbox (9.42453pt too wide) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 growth_rate: Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 [][]\T1/ptm/m/it/10 float[][] = Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 lat-i-tude: Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 [][]\T1/ptm/m/it/10 float[][] = Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 lon-gi-tude: Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 [][]\T1/ptm/m/it/10 float[][] = Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 meta-data: Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 [][]\T1/ptm/m/it/10 dict[][] = Overfull \hbox (22.25432pt too wide) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 tial_population: Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 [][]\T1/ptm/m/it/10 int[][] = Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 sea-port: Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 [][]\T1/ptm/m/it/10 int[][] = Overfull \hbox (50.58374pt too wide) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 val_habitat_multiplier: Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 List[[][]float[][]] Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 ini- Overfull \hbox (86.9334pt too wide) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 tial_vectors_per_species=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 in-fec-tiv- Overfull \hbox (15.02396pt too wide) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 ity_multiplier: Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 [][]\T1/ptm/m/it/10 float[][] = Overfull \hbox (15.23419pt too wide) in paragraph at lines 1945--1945 \T1/ptm/m/it/10 tra_attributes: Underfull \hbox (badness 10000) in paragraph at lines 1945--1945 [][]\T1/ptm/m/it/10 dict[][] = [24] [25] Underfull \hbox (badness 10000) in paragraph at lines 2016--2017 []\T1/pcr/b/n/10 distribution \T1/ptm/m/n/10 ^^U The se-lected dis-tri-bu-tion (need to come from Underfull \hbox (badness 10000) in paragraph at lines 2036--2036 []\T1/ptm/m/it/10 filename\T1/ptm/m/n/10 , \T1/ptm/m/it/10 dis-tri-bu-tion\T1/p tm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2037--2038 \T1/ptm/m/n/10 Set the \T1/pcr/m/n/10 ImmunityDistributionFlag\T1/ptm/m/n/10 , \T1/pcr/m/n/10 ImmunityDistribution1 \T1/ptm/m/n/10 and Underfull \hbox (badness 10000) in paragraph at lines 2064--2064 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2064--2064 \T1/ptm/m/it/10 fn\T1/ptm/m/n/10 , [26] Underfull \hbox (badness 10000) in paragraph at lines 2134--2134 []\T1/ptm/m/it/10 cb\T1/ptm/m/n/10 , Overfull \hbox (28.70406pt too wide) in paragraph at lines 2134--2134 \T1/ptm/m/it/10 use_existing=False\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 2160--2160 []\T1/ptm/m/it/10 cb\T1/ptm/m/n/10 , Overfull \hbox (34.70406pt too wide) in paragraph at lines 2160--2160 \T1/ptm/m/it/10 use_existing=False\T1/pcr/m/n/10 ) [27] Underfull \hbox (badness 10000) in paragraph at lines 2232--2232 []\T1/ptm/m/it/10 point\T1/ptm/m/n/10 , Overfull \hbox (37.41425pt too wide) in paragraph at lines 2232--2232 \T1/ptm/m/it/10 grid_id_2_cell_id\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2273--2273 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Event_Trigger\T1/ptm/m/n /10 , Overfull \hbox (73.22345pt too wide) in paragraph at lines 2273--2273 \T1/ptm/m/it/10 Node_Selection_Type=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 DISTANCE_ ONLY\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (57.50374pt too wide) in paragraph at lines 2273--2273 \T1/ptm/m/it/10 Max_Distance_To_Other_Nodes_Km=- [28] Underfull \hbox (badness 10000) in paragraph at lines 2308--2308 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 In-ter-ven- Underfull \hbox (badness 10000) in paragraph at lines 2351--2352 []\T1/pcr/b/n/10 but without the distribution, which is inferred. E.g., Underfull \hbox (badness 10000) in paragraph at lines 2372--2372 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Event_Or_Config=\TS1/ptm /m/it/10 '\T1/ptm/m/it/10 Event\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/ 10 Con-fig=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2372--2372 \T1/ptm/m/it/10 Event=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 NoTrigger\TS1/ptm/m/it/ 10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Ten-dency=1.0\T1/ptm/m/n/10 , \T1/ptm/m/it /10 Sin-gle_Use=True\T1/ptm/m/n/10 , [29] Underfull \hbox (badness 10000) in paragraph at lines 2416--2416 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Trig-gers\T1/ptm/m/n/10 , \T1/ptm/m/it/10 In-ter-ven-tions\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Prop- Underfull \hbox (badness 10000) in paragraph at lines 2416--2416 \T1/ptm/m/it/10 erty_Restrictions=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 De-mo- Underfull \hbox (badness 10000) in paragraph at lines 2416--2416 \T1/ptm/m/it/10 graphic_Coverage=1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar-get_Ag e_Min=0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar- Underfull \hbox (badness 10000) in paragraph at lines 2416--2416 \T1/ptm/m/it/10 get_Age_Max=45625\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar-get_Gende r=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 All\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/p tm/m/it/10 Tar- Underfull \hbox (badness 10000) in paragraph at lines 2416--2416 \T1/ptm/m/it/10 get_Residents_Only=1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Duration=- 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Black- Underfull \hbox (badness 10000) in paragraph at lines 2416--2416 \T1/ptm/m/it/10 out_Event_Trigger=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Black-ou t_Period=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2416--2416 \T1/ptm/m/it/10 Black-out_On_First_Occurrence=None\T1/ptm/m/n/10 , \T1/ptm/m/it /10 Dis-qual-i-fy- Underfull \hbox (badness 10000) in paragraph at lines 2478--2478 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar-get_Property_Key\T1/ ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2478--2478 \T1/ptm/m/it/10 Tar-get_Property_Value\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2478--2478 \T1/ptm/m/it/10 Daily_Probability=1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Max- Underfull \hbox (badness 10000) in paragraph at lines 2478--2478 \T1/ptm/m/it/10 i-mum_Duration=1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Revert=- Underfull \hbox (badness 10000) in paragraph at lines 2478--2478 \T1/ptm/m/it/10 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 In-ter-ven-tion_Name=\TS1/ptm /m/it/10 ''\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2478--2478 \T1/ptm/m/it/10 Event_Trigger_Distributed=\TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , [30] Underfull \hbox (badness 10000) in paragraph at lines 2486--2487 []\T1/pcr/b/n/10 The key part of the new key-value pair of the IP. Underfull \hbox (badness 10000) in paragraph at lines 2489--2490 []\T1/pcr/b/n/10 The value part of the new key-value pair of the IP. Underfull \hbox (badness 10000) in paragraph at lines 2495--2496 []\T1/pcr/b/n/10 The daily probability that an individual will move to the Underfull \hbox (badness 10000) in paragraph at lines 2498--2499 []\T1/pcr/b/n/10 The maximum amount of time individuals have to move Underfull \hbox (badness 10000) in paragraph at lines 2498--2499 \T1/pcr/b/n/10 to a new group. This timing works in conjunction with Underfull \hbox (badness 10000) in paragraph at lines 2501--2502 []\T1/pcr/b/n/10 The number of days before an individual moves back to their Underfull \hbox (badness 10000) in paragraph at lines 2504--2505 []\T1/pcr/b/n/10 Optional Intervention_Name. Useful if managing a replacement Underfull \hbox (badness 10000) in paragraph at lines 2507--2508 []\T1/pcr/b/n/10 Optional broadcast trigger to be published when PVC is Underfull \hbox (badness 10000) in paragraph at lines 2510--2511 []\T1/pcr/b/n/10 Optional broadcast trigger to be published when PVC is Underfull \hbox (badness 10000) in paragraph at lines 2528--2528 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Start_Day: [][]int[][]\T 1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2528--2528 \T1/ptm/m/it/10 Node_Ids=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Node- Underfull \hbox (badness 10000) in paragraph at lines 2528--2528 \T1/ptm/m/it/10 set_Config=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Num- Underfull \hbox (badness 10000) in paragraph at lines 2528--2528 \T1/ptm/m/it/10 ber_Repetitions: [][]int[][] = 1\T1/ptm/m/n/10 , Overfull \hbox (4.90335pt too wide) in paragraph at lines 2528--2528 \T1/ptm/m/it/10 Timesteps_Between_Repetitions: Underfull \hbox (badness 10000) in paragraph at lines 2528--2528 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Sched-uled_Campaign_Event\TS1/ptm/m/it/10 '\T 1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2528--2528 \T1/ptm/m/it/10 Prop-erty_Restrictions=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2528--2528 \T1/ptm/m/it/10 = 1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar-get_Age_Min=0\T1/ptm/ m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2528--2528 \T1/ptm/m/it/10 Tar-get_Age_Max=45625\T1/ptm/m/n/10 , [31] Underfull \hbox (badness 10000) in paragraph at lines 2595--2595 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Start_Day: [][]int[][]\T 1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2595--2595 \T1/ptm/m/it/10 List[[][]str[][]]\T1/ptm/m/n/10 , \T1/ptm/m/it/10 In-ter-ven-ti on_List: Underfull \hbox (badness 10000) in paragraph at lines 2595--2595 \T1/ptm/m/it/10 List[[][]dict[][]]\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Node_Ids=Non e\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2595--2595 \T1/ptm/m/it/10 Node-set_Config=None\T1/ptm/m/n/10 , Overfull \hbox (17.59343pt too wide) in paragraph at lines 2595--2595 \T1/ptm/m/it/10 Node_Property_Restrictions=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2595--2595 \T1/ptm/m/it/10 Prop-erty_Restrictions=None\T1/ptm/m/n/10 , Overfull \hbox (4.90335pt too wide) in paragraph at lines 2595--2595 \T1/ptm/m/it/10 Timesteps_Between_Repetitions: Underfull \hbox (badness 10000) in paragraph at lines 2595--2595 [][]\T1/ptm/m/it/10 int[][] = - 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 De-mo- Underfull \hbox (badness 10000) in paragraph at lines 2595--2595 \T1/ptm/m/it/10 graphic_Coverage: [][]float[][] Underfull \hbox (badness 10000) in paragraph at lines 2595--2595 \T1/ptm/m/it/10 = 1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar-get_Age_Min=0\T1/ptm/ m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2595--2595 \T1/ptm/m/it/10 Tar-get_Age_Max=45625\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2595--2595 \T1/ptm/m/it/10 Tar-get_Residents_Only=1\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2595--2595 \T1/ptm/m/it/10 Duration=- 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Black- Underfull \hbox (badness 10000) in paragraph at lines 2595--2595 \T1/ptm/m/it/10 Black-out_Period=0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Black- Underfull \hbox (badness 10000) in paragraph at lines 2595--2595 \T1/ptm/m/it/10 out_On_First_Occurrence=0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2595--2595 \T1/ptm/m/it/10 Dis-qual-i-fy- Underfull \hbox (badness 10000) in paragraph at lines 2595--2595 \T1/ptm/m/it/10 ing_Properties=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 De- [32] Underfull \hbox (badness 6078) in paragraph at lines 2683--2683 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Base_Sensitivity: [][]fl oat[][] = Underfull \hbox (badness 10000) in paragraph at lines 2683--2683 \T1/ptm/m/it/10 Event_Trigger_Distributed: [][]str[][] Underfull \hbox (badness 10000) in paragraph at lines 2683--2683 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Event_Trigger_Expired: Underfull \hbox (badness 10000) in paragraph at lines 2683--2683 [][]\T1/ptm/m/it/10 str[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Pos-i- Underfull \hbox (badness 10000) in paragraph at lines 2683--2683 \T1/ptm/m/it/10 tive_Diagnosis_Intervention=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2683--2683 \T1/ptm/m/it/10 Pos-i-tive_Diagnosis_Event: Underfull \hbox (badness 10000) in paragraph at lines 2683--2683 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Pos-i-tiveRe-su lt\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Neg-a- Underfull \hbox (badness 10000) in paragraph at lines 2683--2683 \T1/ptm/m/it/10 tive_Diagnosis_Intervention=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2683--2683 \T1/ptm/m/it/10 Neg-a-tive_Diagnosis_Event: Underfull \hbox (badness 10000) in paragraph at lines 2683--2683 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Neg-a-tiveRe-su lt\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Treat- [33] Underfull \hbox (badness 10000) in paragraph at lines 2737--2737 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2737--2737 \T1/ptm/m/it/10 trig-ger\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-lay\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2737--2737 \T1/ptm/m/it/10 in-ter-ven-tion\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2737--2737 \T1/ptm/m/it/10 ip_targeting=[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2751--2752 []\T1/pcr/b/n/10 without the distribution, which is inferred. E.g., { Underfull \hbox (badness 10000) in paragraph at lines 2774--2774 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2774--2774 \T1/ptm/m/it/10 new_ip_key\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2774--2774 \T1/ptm/m/it/10 new_ip_value\T1/ptm/m/n/10 , Overfull \hbox (25.72469pt too wide) in paragraph at lines 2774--2774 \T1/ptm/m/it/10 change_age_in_days\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2774--2774 \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 2774--2774 \T1/ptm/m/it/10 vert_in_days\T1/ptm/m/n/10 , Overfull \hbox (8.6443pt too wide) in paragraph at lines 2774--2774 \T1/ptm/m/it/10 ip_targeting_key\T1/ptm/m/n/10 , Overfull \hbox (17.38419pt too wide) in paragraph at lines 2774--2774 \T1/ptm/m/it/10 ip_targeting_value\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2774--2774 \T1/ptm/m/it/10 cov-er- [34] Underfull \hbox (badness 10000) in paragraph at lines 2833--2833 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 nodeto\T1/ptm/m/n/10 , \ T1/ptm/m/it/10 start_day: Underfull \hbox (badness 8056) in paragraph at lines 2833--2833 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age: [][ ]float[][] Underfull \hbox (badness 7851) in paragraph at lines 2833--2833 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar-get_age: [][]dict[][ ] Underfull \hbox (badness 10000) in paragraph at lines 2833--2833 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 nodes_from_ids: Underfull \hbox (badness 10000) in paragraph at lines 2833--2833 \T1/ptm/m/it/10 List[[][]int[][]] = None\T1/ptm/m/n/10 , Overfull \hbox (5.56337pt too wide) in paragraph at lines 2833--2833 \T1/ptm/m/it/10 ind_property_restrictions=None\T1/ptm/m/n/10 , Overfull \hbox (12.22342pt too wide) in paragraph at lines 2833--2833 \T1/ptm/m/it/10 node_property_restrictions=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2833--2833 \T1/ptm/m/it/10 trig-gered_campaign_delay=0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2833--2833 \T1/ptm/m/it/10 trig-ger_condition_list=None\T1/ptm/m/n/10 , [35] Underfull \hbox (badness 10000) in paragraph at lines 2862--2866 []\T1/ptm/m/n/10 {^^PDuration_Before_Leaving_Distribution^^Q:^^QGAUSSIAN_DISTRI BUTION^^Q, Underfull \hbox (badness 10000) in paragraph at lines 2862--2866 \T1/ptm/m/n/10 ^^PDu-ra-tion_Before_Leaving_Gaussian_Mean^^Q: 14, ^^PDu- Underfull \hbox (badness 10000) in paragraph at lines 2862--2866 \T1/ptm/m/n/10 ra-tion_Before_Leaving_Gaussian_Std_Dev^^Q 3} {^^PDu-ra- Underfull \hbox (badness 10000) in paragraph at lines 2862--2866 \T1/ptm/m/n/10 tion_Before_Leaving_Distribution^^Q:^^QPOISSON_DISTRIBUTION^^Q, ^^PDu-ra- Underfull \hbox (badness 10000) in paragraph at lines 2875--2878 []\T1/ptm/m/n/10 {^^PDuration_At_Node_Distribution^^Q:^^QGAUSSIAN_DISTRIBUTION^ ^Q, ^^PDu-ra- Underfull \hbox (badness 10000) in paragraph at lines 2875--2878 \T1/ptm/m/n/10 tion_At_Node_Gaussian_Mean^^Q: 14, ^^PDu-ra-tion_At_Node_Gaussia n_Std_Dev^^Q Underfull \hbox (badness 10000) in paragraph at lines 2875--2878 \T1/ptm/m/n/10 3} {^^PDu-ra-tion_At_Node_Distribution^^Q:^^QPOISSON_DISTRIBUTIO N^^Q, ^^PDu-ra- Overfull \hbox (19.69089pt too wide) in paragraph at lines 2922--2926 \T1/ptm/m/n/10 from emod_api im-port cam-paign as camp dan = {^^PDu-ra-tion_At_ Node_Distribution^^Q:^^QPOISSON_DISTRIBUTION^^Q, Overfull \hbox (57.24088pt too wide) in paragraph at lines 2922--2926 \T1/ptm/m/n/10 ^^PDu-ra-tion_At_Node_Poisson_Mean^^Q 30} dbl = {^^PDu-ra-tion_B efore_Leaving_Distribution^^Q:^^QGAUSSIAN_DISTRIBUTION^^Q, Underfull \hbox (badness 10000) in paragraph at lines 2927--2932 [] [36] Underfull \hbox (badness 10000) in paragraph at lines 2943--2943 \T1/ptm/m/it/10 pro-file=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 CONST\TS1/ptm/m/it/1 0 '\T1/ptm/m/n/10 , ! LaTeX Error: Too deeply nested. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.2952 ...{CONST(ANT)}] \leavevmode\begin{itemize} Underfull \hbox (badness 10000) in paragraph at lines 3014--3014 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day=1\T1/ptm/m/n/1 0 , Underfull \hbox (badness 10000) in paragraph at lines 3014--3014 \T1/ptm/m/it/10 new_infectivity=1.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3014--3014 \T1/ptm/m/it/10 pro-file=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 CONST\TS1/ptm/m/it/1 0 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3014--3014 \T1/ptm/m/it/10 node_ids=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3014--3014 \T1/ptm/m/it/10 re-cur-ring=True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3022--3022 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3033--3033 \T1/ptm/m/it/10 age=0.01\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ig-nore_immunity=None\ T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3042--3042 []\T1/ptm/m/it/10 campaign_builder\T1/ptm/m/n/10 , \T1/ptm/m/it/10 timestep\T1/ ptm/m/n/10 , [37] Underfull \hbox (badness 10000) in paragraph at lines 3076--3076 \T1/ptm/m/it/10 ef-fi-cacy=1.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3076--3076 \T1/ptm/m/it/10 sv_name=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Vaccine\TS1/ptm/m/it/ 10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3076--3076 \T1/ptm/m/it/10 wan-ing_duration=100\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3076--3076 \T1/ptm/m/it/10 d_a_d=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3076--3076 \T1/ptm/m/it/10 cost_to_consumer=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3076--3076 \T1/ptm/m/it/10 e_i_r=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in-ter-ven- Underfull \hbox (badness 10000) in paragraph at lines 3097--3097 []\T1/ptm/m/it/10 timestep\T1/ptm/m/n/10 , \T1/ptm/m/it/10 file- Underfull \hbox (badness 10000) in paragraph at lines 3114--3114 []\T1/ptm/m/it/10 schema_path\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ini-tial=1.0\T1/p tm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3114--3114 \T1/ptm/m/it/10 box_duration=365\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de- [38] [39] Underfull \hbox (badness 5548) in paragraph at lines 3221--3224 []\T1/ptm/m/n/10 EMOD/DTK for-mat mi-gra-tion files (and as-so-ci-ated meta-dat a files) can be writ-ten with mi-gra- [40] Underfull \hbox (badness 10000) in paragraph at lines 3487--3487 \T1/ptm/m/it/10 num_nodes=100\T1/ptm/m/n/10 , \T1/ptm/m/it/10 mig_factor=1.0\T1 /ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3487--3487 \T1/ptm/m/it/10 frac_rural=0.3\T1/ptm/m/n/10 , \T1/ptm/m/it/10 id_ref=\TS1/ptm/ m/it/10 '\T1/ptm/m/it/10 from_params\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm/ m/it/10 mi- Overfull \hbox (68.98433pt too wide) in paragraph at lines 3498--3498 []\T1/ptm/m/it/10 demographics_file_path: Underfull \hbox (badness 10000) in paragraph at lines 3498--3498 [][]\T1/ptm/m/it/10 str[][]\T1/ptm/m/n/10 , Overfull \hbox (2.42482pt too wide) in paragraph at lines 3498--3498 \T1/ptm/m/it/10 params: Underfull \hbox (badness 10000) in paragraph at lines 3498--3498 [][]\T1/ptm/m/it/10 str[][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3498--3498 \T1/ptm/m/it/10 id_ref: Underfull \hbox (badness 10000) in paragraph at lines 3498--3498 [][]\T1/ptm/m/it/10 str[][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3498--3498 \T1/ptm/m/it/10 mi-gra- Overfull \hbox (24.21457pt too wide) in paragraph at lines 3498--3498 \T1/ptm/m/it/10 tion_type=1\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 3498--3498 \OMS/cmsy/m/n/10 !$ Overfull \hbox (135.19371pt too wide) in paragraph at lines 3498--3498 [][]\T1/ptm/m/it/10 emod_api.migration.migration.Migration[][] [41] Overfull \hbox (2.15437pt too wide) in paragraph at lines 3526--3526 []\T1/ptm/m/it/10 demographics_file_path\T1/ptm/m/n/10 , Overfull \hbox (24.70302pt too wide) in paragraph at lines 3580--3580 []\T1/ptm/m/it/10 path_to_binary\T1/ptm/m/n/10 , \T1/ptm/m/it/10 path_to_write_ schema=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 schema.json\TS1/ptm/m/it/10 '\T1/pcr/m /n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 3601--3601 []\T1/ptm/m/it/10 input_serpop_path\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3601--3601 \T1/ptm/m/it/10 mod_fn=None\T1/ptm/m/n/10 , [42] Underfull \hbox (badness 10000) in paragraph at lines 3622--3622 []\T1/ptm/m/it/10 file: [43] Underfull \hbox (badness 10000) in paragraph at lines 3748--3748 []\T1/ptm/m/it/10 name: [][]str[][]\T1/ptm/m/n/10 , \T1/ptm/m/it/10 han-dle\T1/ ptm/m/n/10 , \T1/ptm/m/it/10 cur- Underfull \hbox (badness 10000) in paragraph at lines 3783--3783 []\T1/ptm/m/it/10 handle\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cur- [44] [45] [46] Underfull \hbox (badness 10000) in paragraph at lines 4146--4146 \T1/ptm/m/it/10 List[[][]int[][]] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 data: Underfull \hbox (badness 10000) in paragraph at lines 4146--4146 \T1/ptm/m/it/10 numpy.array = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start: [47] [48] [49] [50] [51] [52] Chapter 4. [53] [54] Overfull \hbox (66.6225pt too wide) in paragraph at lines 4685--4686 []\T1/pcr/m/n/10 emod_api.config.default_from_schema_no_validation\T1/ptm/m/n/1 0 , Overfull \hbox (36.6225pt too wide) in paragraph at lines 4686--4687 []\T1/pcr/m/n/10 emod_api.config.dtk_post_process_adhocevents\T1/ptm/m/n/10 , Overfull \hbox (30.6225pt too wide) in paragraph at lines 4687--4688 []\T1/pcr/m/n/10 emod_api.config.dtk_pre_process_adhocevents\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4688--4689 []\T1/pcr/m/n/10 emod_api.config.dtk_pre_process_w5ml\T1/ptm/m/n/10 , Overfull \hbox (12.6225pt too wide) in paragraph at lines 4696--4697 []\T1/pcr/m/n/10 emod_api.demographics.demographics_utils\T1/ptm/m/n/10 , Overfull \hbox (30.6225pt too wide) in paragraph at lines 4697--4698 []\T1/pcr/m/n/10 emod_api.demographics.DemographicsGenerator\T1/ptm/m/n/10 , Overfull \hbox (72.6225pt too wide) in paragraph at lines 4698--4699 []\T1/pcr/m/n/10 emod_api.demographics.DemographicsInputDataParsers\T1/ptm/m/n/ 10 , Overfull \hbox (30.6225pt too wide) in paragraph at lines 4699--4700 []\T1/pcr/m/n/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 , Overfull \hbox (6.6225pt too wide) in paragraph at lines 4700--4701 []\T1/pcr/m/n/10 emod_api.demographics.grid_construction\T1/ptm/m/n/10 , Overfull \hbox (42.6225pt too wide) in paragraph at lines 4702--4703 []\T1/pcr/m/n/10 emod_api.demographics.PreDefinedDistributions\T1/ptm/m/n/10 , Overfull \hbox (42.6225pt too wide) in paragraph at lines 4703--4704 []\T1/pcr/m/n/10 emod_api.demographics.PropertiesAndAttributes\T1/ptm/m/n/10 , Overfull \hbox (0.6225pt too wide) in paragraph at lines 4707--4708 []\T1/pcr/m/n/10 emod_api.interventions.import_pressure\T1/ptm/m/n/10 , Overfull \hbox (0.6225pt too wide) in paragraph at lines 4709--4710 []\T1/pcr/m/n/10 emod_api.interventions.node_multiplier\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4711--4712 []\T1/pcr/m/n/10 emod_api.interventions.simple_vaccine\T1/ptm/m/n/10 , Overfull \hbox (6.6225pt too wide) in paragraph at lines 4718--4719 []\T1/pcr/m/n/10 emod_api.schema.dtk_post_process_schema\T1/ptm/m/n/10 , Overfull \hbox (0.6225pt too wide) in paragraph at lines 4722--4723 []\T1/pcr/m/n/10 emod_api.serialization.CensusAndModPop\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4723--4724 []\T1/pcr/m/n/10 emod_api.serialization.dtkFileSupport\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4725--4726 []\T1/pcr/m/n/10 emod_api.serialization.dtkFileUtility\T1/ptm/m/n/10 , Overfull \hbox (30.6225pt too wide) in paragraph at lines 4726--4727 []\T1/pcr/m/n/10 emod_api.serialization.SerializedPopulation\T1/ptm/m/n/10 , [55] (./institute-for-disease-modeling-emod-api.ind [56] Overfull \hbox (88.70953pt too wide) in paragraph at lines 8--10 []\T1/pcr/m/n/10 add() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Pr opertiesAndAttributes.IndividualProperties Underfull \hbox (badness 10000) in paragraph at lines 11--13 []\T1/pcr/m/n/10 add_migration_event() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-u le Overfull \hbox (148.70953pt too wide) in paragraph at lines 13--15 []\T1/pcr/m/n/10 add_parameter() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demog raphics.PropertiesAndAttributes.IndividualProperties Overfull \hbox (61.87129pt too wide) in paragraph at lines 15--17 []\T1/pcr/m/n/10 add_parameter() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demog raphics.Updateable.Updateable Underfull \hbox (badness 10000) in paragraph at lines 17--19 []\T1/pcr/m/n/10 AddAgeDependentTransmission() Overfull \hbox (34.06111pt too wide) in paragraph at lines 17--19 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 19--21 []\T1/pcr/m/n/10 AddIndividualPropertyAndHINT() Overfull \hbox (34.06111pt too wide) in paragraph at lines 19--21 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paragraph at lines 64--66 []\T1/pcr/m/n/10 birth_rate() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demograp hics.Node.Node Underfull \hbox (badness 10000) in paragraph at lines 66--68 []\T1/pcr/m/n/10 BroadcastEvent() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 68--70 []\T1/pcr/m/n/10 BroadcastEventToOtherNodes() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 i n mod-ule Overfull \hbox (23.59027pt too wide) in paragraph at lines 71--73 []\T1/pcr/m/n/10 byte_count() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializ ation.dtkFileTools.DtkFile Underfull \hbox (badness 7291) in paragraph at lines 76--78 []\T1/pcr/m/n/10 change_individual_property_at_age() \T1/ptm/m/n/10 (\T1/ptm/m/ it/10 in Underfull \hbox (badness 10000) in paragraph at lines 78--80 []\T1/pcr/m/n/10 change_ser_pop() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 78--80 \T1/ptm/m/it/10 emod_api.serialization.CensusAndModPop\T1/ptm/m/n/10 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[]\T1/pcr/m/n/10 DateCreated() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migrati on.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 136--138 []\T1/pcr/m/n/10 default_population Underfull \hbox (badness 10000) in paragraph at lines 136--138 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Node.Node at- Underfull \hbox (badness 7291) in paragraph at lines 138--140 []\T1/pcr/m/n/10 DefaultSusceptibilityDistribution() \T1/ptm/m/n/10 (\T1/ptm/m/ it/10 in Overfull \hbox (46.96086pt too wide) in paragraph at lines 138--140 \T1/ptm/m/it/10 mod-ule emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/ 10 ), Underfull \hbox (badness 10000) in paragraph at lines 140--142 []\T1/pcr/m/n/10 DelayedIntervention() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 142--144 []\T1/pcr/m/n/10 Demographics \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 142--144 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 144--146 []\T1/pcr/m/n/10 DemographicsGenerator \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Overfull \hbox (17.1711pt too wide) in paragraph at lines 144--146 \T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 146--148 []\T1/pcr/m/n/10 DemographicsOverlay \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 146--148 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 148--150 []\T1/pcr/m/n/10 DemographicsType \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Overfull \hbox (17.1711pt too wide) in paragraph at lines 148--150 \T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 150--152 []\T1/pcr/m/n/10 do_mapping_from_events() 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emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 293--295 []\T1/pcr/m/n/10 examine_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 303--305 []\T1/pcr/m/n/10 fill_nodes_legacy() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (46.65079pt too wide) in paragraph at lines 303--305 \T1/ptm/m/it/10 emod_api.demographics.DemographicsInputDataParsers\T1/ptm/m/n/1 0 ), Overfull \hbox (4.62106pt too wide) in paragraph at lines 305--307 []\T1/pcr/m/n/10 finalize() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.schema_to_ class.ReadOnlyDict Overfull \hbox (36.30013pt too wide) in paragraph at lines 307--309 []\T1/pcr/m/n/10 find() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule emod_api.ser ialization.SerializedPopulation\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 309--311 []\T1/pcr/m/n/10 flattenConfig() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (81.59949pt too wide) in paragraph at lines 311--313 []\T1/pcr/m/n/10 flush() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serialization .SerializedPopulation.SerializedPopulation Underfull \hbox (badness 10000) in paragraph at lines 315--317 []\T1/pcr/m/n/10 from_csv() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 315--317 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 317--318 []\T1/pcr/m/n/10 from_csv() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 318--320 []\T1/pcr/m/n/10 from_data() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demograph ics.Node.Node Underfull \hbox (badness 10000) in paragraph at lines 320--322 []\T1/pcr/m/n/10 from_dataframe() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (17.1711pt too wide) in paragraph at lines 320--322 \T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/ptm/m/n/10 ), Overfull \hbox (16.1225pt too wide) in paragraph at lines 324--326 []\T1/pcr/m/n/10 from_demog_and_param_gravity_webservice() Overfull \hbox (122.1895pt too wide) in paragraph at lines 326--328 []\T1/pcr/m/n/10 from_dict() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demograph ics.PropertiesAndAttributes.IndividualAttributes Overfull \hbox (188.8387pt too wide) in paragraph at lines 328--330 []\T1/pcr/m/n/10 from_dict() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demograph ics.PropertiesAndAttributes.IndividualAttributes.AgeDistribution Overfull \hbox (211.16812pt too wide) in paragraph at lines 330--332 []\T1/pcr/m/n/10 from_dict() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demograph ics.PropertiesAndAttributes.IndividualAttributes.MortalityDistribution Overfull \hbox (102.18979pt too wide) in paragraph at lines 332--334 []\T1/pcr/m/n/10 from_dict() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demograph ics.PropertiesAndAttributes.NodeAttributes Underfull \hbox (badness 10000) in paragraph at lines 334--336 []\T1/pcr/m/n/10 from_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.weather.w eather.Metadata Underfull \hbox (badness 10000) in paragraph at lines 336--338 []\T1/pcr/m/n/10 from_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 336--338 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 338--340 []\T1/pcr/m/n/10 from_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (17.1711pt too wide) in paragraph at lines 338--340 \T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 340--341 []\T1/pcr/m/n/10 from_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 341--343 []\T1/pcr/m/n/10 from_params() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 341--343 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 343--344 []\T1/pcr/m/n/10 from_params() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 344--346 []\T1/pcr/m/n/10 from_pop_csv() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 344--346 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 346--348 []\T1/pcr/m/n/10 from_template_node() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 346--348 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 348--350 []\T1/pcr/m/n/10 FullRisk() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (15.62103pt too wide) in paragraph at lines 348--350 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Overfull \hbox (37.30118pt too wide) in paragraph at lines 353--355 []\T1/pcr/m/n/10 GenderDataType() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migr ation.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 355--357 []\T1/pcr/m/n/10 generate_demographics() Overfull \hbox (115.97037pt too wide) in paragraph at lines 355--357 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator.Dem ographicsGenerator Overfull \hbox (80.97084pt too wide) in paragraph at lines 357--359 []\T1/pcr/m/n/10 generate_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demog raphics.BaseInputFile.BaseInputFile Overfull \hbox (85.96114pt too wide) in paragraph at lines 359--361 []\T1/pcr/m/n/10 generate_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demog raphics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 361--363 []\T1/pcr/m/n/10 generate_headers() Overfull \hbox (29.07082pt too wide) in paragraph at lines 361--363 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.BaseInputFile.BaseInputFi le Underfull \hbox (badness 10000) in paragraph at lines 363--365 []\T1/pcr/m/n/10 generate_metadata() Overfull \hbox (115.97037pt too wide) in paragraph at lines 363--365 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator.Dem ographicsGenerator Overfull \hbox (173.87039pt too wide) in paragraph at lines 365--367 []\T1/pcr/m/n/10 generate_nodes() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demo graphics.DemographicsGenerator.DemographicsGenerator Underfull \hbox (badness 10000) in paragraph at lines 368--370 []\T1/pcr/m/n/10 get_bbox() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 368--370 \T1/ptm/m/it/10 emod_api.demographics.grid_construction\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 370--372 []\T1/pcr/m/n/10 get_class_with_defaults() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in m od-ule [60] Overfull \hbox (62.64088pt too wide) in paragraph at lines 372--374 \T1/ptm/m/it/10 mod-ule emod_api.config.default_from_schema_no_validation\T1/pt m/m/n/10 ), Overfull \hbox (45.42091pt too wide) in paragraph at lines 374--376 \T1/ptm/m/it/10 ule emod_api.config.default_from_schema_no_validation\T1/ptm/m/ n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 379--381 []\T1/pcr/m/n/10 get_fert_dist() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (15.62103pt too wide) in paragraph at lines 379--381 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 381--383 []\T1/pcr/m/n/10 get_grid_cell_id() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 381--383 \T1/ptm/m/it/10 emod_api.demographics.grid_construction\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 383--385 []\T1/pcr/m/n/10 get_next_individual_suid() Overfull \hbox (77.69946pt too wide) in paragraph at lines 383--385 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serialization.SerializedPopulation.Ser ializedPopulation Underfull \hbox (badness 10000) in paragraph at lines 385--387 []\T1/pcr/m/n/10 get_next_infection_suid() Overfull \hbox (77.69946pt too wide) in paragraph at lines 385--387 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serialization.SerializedPopulation.Ser ializedPopulation Overfull \hbox (55.96114pt too wide) in paragraph at lines 387--389 []\T1/pcr/m/n/10 get_node() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographi cs.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 389--391 []\T1/pcr/m/n/10 get_node_ids_from_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 389--391 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 391--393 []\T1/pcr/m/n/10 get_node_offsets() Underfull \hbox (badness 10000) in paragraph at lines 391--393 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 393--395 []\T1/pcr/m/n/10 get_node_pops_from_params() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 395--397 []\T1/pcr/m/n/10 get_parameters() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 395--397 \T1/ptm/m/it/10 emod_api.serialization.SerializedPopulation\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 397--398 []\T1/pcr/m/n/10 get_recv_trigger() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 399--400 []\T1/pcr/m/n/10 get_send_trigger() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 400--401 []\T1/pcr/m/n/10 get_trigger_list() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 401--403 []\T1/pcr/m/n/10 get_waning_from_params() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 403--405 []\T1/pcr/m/n/10 get_xpix_ypix() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (26.83089pt too wide) in paragraph at lines 409--411 []\T1/pcr/m/n/10 header() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channelrepor ts.channels.ChannelReport Underfull \hbox (badness 10000) in paragraph at lines 420--422 []\T1/pcr/m/n/10 id() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.spatialreports.s patial.SpatialNode Underfull \hbox (badness 7308) in paragraph at lines 422--423 []\T1/pcr/m/n/10 id() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.weather.weather. WeatherNode prop- Overfull \hbox (6.84114pt too wide) in paragraph at lines 423--425 []\T1/pcr/m/n/10 id_reference() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.weathe r.weather.Metadata Overfull \hbox (1.47115pt too wide) in paragraph at lines 425--427 []\T1/pcr/m/n/10 id_reference() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.weathe r.weather.Weather Underfull \hbox (badness 10000) in paragraph at lines 427--429 []\T1/pcr/m/n/10 IDREF_GRUMP1DEGREE Underfull \hbox (badness 10000) in paragraph at lines 427--429 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 429--431 []\T1/pcr/m/n/10 IDREF_GRUMP2PT5ARCMIN Underfull \hbox (badness 10000) in paragraph at lines 429--431 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 431--433 []\T1/pcr/m/n/10 IDREF_GRUMP30ARCSEC Underfull \hbox (badness 10000) in paragraph at lines 431--433 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.migration.Migration Overfull \hbox (13.30058pt too wide) in paragraph at lines 433--435 []\T1/pcr/m/n/10 IDREF_LEGACY \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migratio n.migration.Migration Overfull \hbox (19.30118pt too wide) in paragraph at lines 435--437 []\T1/pcr/m/n/10 IdReference() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migrati on.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 437--439 []\T1/pcr/m/n/10 IndividualAttributes \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Overfull \hbox (13.93057pt too wide) in paragraph at lines 437--439 \T1/ptm/m/it/10 emod_api.demographics.PropertiesAndAttributes\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 439--441 []\T1/pcr/m/n/10 IndividualAttributes.AgeDistribution Overfull \hbox (48.84009pt too wide) in paragraph at lines 439--441 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in emod_api.demographics.PropertiesAndAtt ributes\T1/ptm/m/n/10 ), Overfull \hbox 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(\T1/ptm/m/it/10 class in Overfull \hbox (13.93057pt too wide) in paragraph at lines 447--449 \T1/ptm/m/it/10 emod_api.demographics.PropertiesAndAttributes\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 449--451 []\T1/pcr/m/n/10 infer_natural_mortality() Overfull \hbox (34.06111pt too wide) in paragraph at lines 449--451 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 451--453 []\T1/pcr/m/n/10 init_resolution_from_file() Underfull \hbox (badness 10000) in paragraph at lines 451--453 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Node.Node class Underfull \hbox (badness 10000) in paragraph at lines 453--455 []\T1/pcr/m/n/10 InitAgeUniform() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (15.62103pt too wide) in paragraph at lines 453--455 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 455--457 []\T1/pcr/m/n/10 InitPrevUniform() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (15.62103pt too wide) in paragraph at lines 455--457 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), [61] Underfull \hbox (badness 10000) in paragraph at lines 457--459 []\T1/pcr/m/n/10 InitRiskExponential() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-u le Overfull \hbox (15.62103pt too wide) in paragraph at lines 457--459 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 459--461 []\T1/pcr/m/n/10 InitRiskLogNormal() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (15.62103pt too wide) in paragraph at lines 459--461 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 461--463 []\T1/pcr/m/n/10 InitRiskUniform() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (15.62103pt too wide) in paragraph at lines 461--463 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 463--465 []\T1/pcr/m/n/10 InitSusceptConstant() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-u le Overfull \hbox (15.62103pt too wide) in paragraph at lines 463--465 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 465--467 []\T1/pcr/m/n/10 InterpolationType() Underfull \hbox (badness 10000) in paragraph at lines 465--467 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.migration.Migration Overfull \hbox (20.8303pt too wide) in paragraph at lines 467--469 []\T1/pcr/m/n/10 interval() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.spatialrep orts.spatial.SpatialReport Overfull \hbox (13.30058pt too wide) in paragraph at lines 469--471 []\T1/pcr/m/n/10 INTERVENTION \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migratio n.migration.Migration Underfull \hbox 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lines 497--499 []\T1/pcr/m/n/10 make_config_from_poi_and_schema() \T1/ptm/m/n/10 (\T1/ptm/m/it /10 in Overfull \hbox (3.35153pt too wide) in paragraph at lines 497--499 \T1/ptm/m/it/10 mod-ule emod_api.config.from_poi_and_binary\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 499--500 []\T1/pcr/m/n/10 MALE \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.migrat ion.Migration at- Underfull \hbox (badness 10000) in paragraph at lines 503--504 []\T1/pcr/m/n/10 metadata() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.weather.we ather.Weather Overfull \hbox (31.30118pt too wide) in paragraph at lines 505--507 []\T1/pcr/m/n/10 MigrationType() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migra tion.migration.Migration Overfull \hbox (2.6225pt too wide) in paragraph at lines 513--514 []| \T1/pcr/m/n/10 emod_api.config.default_from_schema\T1/ptm/m/n/10 , Overfull \hbox (86.6225pt too wide) in paragraph at lines 514--515 []| \T1/pcr/m/n/10 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Underfull \hbox (badness 10000) in paragraph at lines 674--676 []\T1/pcr/m/n/10 REGIONAL \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.mi gration.Migration Overfull \hbox (56.83089pt too wide) in paragraph at lines 676--678 []\T1/pcr/m/n/10 report_type() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channel reports.channels.ChannelReport Overfull \hbox (25.71117pt too wide) in paragraph at lines 678--680 []\T1/pcr/m/n/10 report_type() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channel reports.channels.Header Overfull \hbox (74.83089pt too wide) in paragraph at lines 680--682 []\T1/pcr/m/n/10 report_version() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.chan nelreports.channels.ChannelReport Overfull \hbox (43.71117pt too wide) in paragraph at lines 682--684 []\T1/pcr/m/n/10 report_version() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.chan nelreports.channels.Header Overfull \hbox (4.77174pt too wide) in paragraph at lines 684--686 []\T1/pcr/m/n/10 res_in_degrees \T1/ptm/m/n/10 (\T1/ptm/m/it/10 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emod_api.demo graphics.DemographicsGenerator.DemographicsGenerator Underfull \hbox (badness 10000) in paragraph at lines 719--721 []\T1/pcr/m/n/10 set_risk_mod() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 719--721 \T1/ptm/m/it/10 emod_api.demographics.demographics_utils\T1/ptm/m/n/10 ), Overfull \hbox (16.62106pt too wide) in paragraph at lines 721--723 []\T1/pcr/m/n/10 set_schema() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.schema_t o_class.ReadOnlyDict Underfull \hbox (badness 10000) in paragraph at lines 724--726 []\T1/pcr/m/n/10 set_schema() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 724--726 \T1/ptm/m/it/10 emod_api.config.from_poi_and_binary\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 726--728 []\T1/pcr/m/n/10 set_static_demographics() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in m od-ule Underfull \hbox (badness 10000) in paragraph at lines 726--728 \T1/ptm/m/it/10 emod_api.demographics.demographics_utils\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 728--730 []\T1/pcr/m/n/10 SetAgeDistribution() Overfull \hbox (34.06111pt too wide) in paragraph at lines 728--730 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Overfull \hbox (79.96114pt too wide) in paragraph at lines 730--732 []\T1/pcr/m/n/10 SetBirthRate() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demogr aphics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 732--734 []\T1/pcr/m/n/10 SetConstantRisk() Overfull \hbox (34.06111pt too wide) in paragraph at lines 732--734 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 734--736 []\T1/pcr/m/n/10 SetConstantSusceptibility() Overfull \hbox (34.06111pt too wide) in paragraph at lines 734--736 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 736--738 []\T1/pcr/m/n/10 SetDefaultFromTemplate() Overfull \hbox (34.06111pt too wide) in paragraph at lines 736--738 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 738--740 []\T1/pcr/m/n/10 SetDefaultIndividualAttributes() Overfull \hbox (34.06111pt too wide) in paragraph at lines 738--740 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 740--742 []\T1/pcr/m/n/10 SetDefaultIndividualProperties() Overfull \hbox (34.06111pt too wide) in paragraph at lines 740--742 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 742--744 []\T1/pcr/m/n/10 SetDefaultNodeAttributes() Overfull \hbox (34.06111pt too wide) in paragraph at lines 742--744 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 744--746 []\T1/pcr/m/n/10 SetDefaultProperties() Overfull \hbox (34.06111pt too wide) in paragraph at lines 744--746 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 746--748 []\T1/pcr/m/n/10 SetDefaultPropertiesFertMort() Overfull \hbox (34.06111pt too wide) in paragraph at lines 746--748 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Overfull \hbox (34.1225pt too wide) in paragraph at lines 748--750 []\T1/pcr/m/n/10 SetEquilibriumAgeDistFromBirthAndMortRates() Overfull \hbox (34.06111pt too wide) in paragraph at lines 748--750 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 750--752 []\T1/pcr/m/n/10 SetHeteroRiskExponDist() Overfull \hbox (34.06111pt too wide) in paragraph at lines 750--752 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 752--754 []\T1/pcr/m/n/10 SetHeteroRiskLognormalDist() Overfull \hbox (34.06111pt too wide) in paragraph at lines 752--754 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 754--756 []\T1/pcr/m/n/10 SetHeteroRiskUniformDist() Overfull \hbox (34.06111pt too wide) in paragraph at lines 754--756 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 756--758 []\T1/pcr/m/n/10 SetIndividualAttributesWithFertMort() Overfull \hbox (34.06111pt too wide) in paragraph at lines 756--758 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 758--760 []\T1/pcr/m/n/10 SetInitialAgeExponential() Overfull \hbox (34.06111pt too wide) in paragraph at lines 758--760 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 760--762 []\T1/pcr/m/n/10 SetInitialAgeLikeSubSaharanAfrica() Overfull \hbox (34.06111pt too wide) in paragraph at lines 760--762 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 762--764 []\T1/pcr/m/n/10 SetInitPrevFromUniformDraw() Overfull \hbox (34.06111pt too wide) in paragraph at lines 762--764 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 764--766 []\T1/pcr/m/n/10 SetMinimalNodeAttributes() Overfull \hbox (34.06111pt too wide) in paragraph at lines 764--766 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at 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paragraph at lines 774--776 []\T1/pcr/m/n/10 SimpleSusceptibilityDistribution() \T1/ptm/m/n/10 (\T1/ptm/m/i t/10 in Overfull \hbox (46.96086pt too wide) in paragraph at lines 774--776 \T1/ptm/m/it/10 mod-ule emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/ 10 ), Overfull \hbox (34.70026pt too wide) in paragraph at lines 776--778 []\T1/pcr/m/n/10 simulation() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializ ation.dtkFileTools.DtkFileV1 Overfull \hbox (34.70026pt too wide) in paragraph at lines 778--780 []\T1/pcr/m/n/10 simulation() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializ ation.dtkFileTools.DtkFileV2 Overfull \hbox (34.70026pt too wide) in paragraph at lines 780--782 []\T1/pcr/m/n/10 simulation() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializ ation.dtkFileTools.DtkFileV3 Overfull \hbox (2.94016pt too wide) in paragraph at lines 782--783 []\T1/pcr/m/n/10 Snappy \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in emod_api.seria lization.dtkFileSupport\T1/ptm/m/n/10 ), Underfull 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[]\T1/pcr/m/n/10 STATIC \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.D emographicsGenerator.DemographicsType Overfull \hbox (44.83089pt too wide) in paragraph at lines 796--798 []\T1/pcr/m/n/10 step_size() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channelre ports.channels.ChannelReport Overfull \hbox (13.71117pt too wide) in paragraph at lines 798--800 []\T1/pcr/m/n/10 step_size() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channelre ports.channels.Header Underfull \hbox (badness 10000) in paragraph at lines 800--802 []\T1/pcr/m/n/10 StepFunctionSusceptibility() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 i n mod-ule Overfull \hbox (15.62103pt too wide) in paragraph at lines 800--802 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Overfull \hbox (50.83089pt too wide) in paragraph at lines 807--809 []\T1/pcr/m/n/10 time_stamp() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channelr eports.channels.ChannelReport Overfull \hbox (19.71117pt too wide) in paragraph at lines 809--811 []\T1/pcr/m/n/10 time_stamp() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channelr eports.channels.Header Overfull \hbox (32.8303pt too wide) in paragraph at lines 811--813 []\T1/pcr/m/n/10 time_steps() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.spatialr eports.spatial.SpatialReport Underfull \hbox (badness 5741) in paragraph at lines 813--815 []\T1/pcr/m/n/10 title() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channelreport s.channels.Channel Overfull \hbox (82.17072pt too wide) in paragraph at lines 816--818 []\T1/pcr/m/n/10 to_dict() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographic s.Demographics.DemographicsOverlay Underfull \hbox (badness 10000) in paragraph at lines 818--819 []\T1/pcr/m/n/10 to_dict() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographic s.Node.Node Overfull \hbox (110.1895pt too wide) in paragraph at lines 819--821 []\T1/pcr/m/n/10 to_dict() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographic s.PropertiesAndAttributes.IndividualAttributes Overfull \hbox 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10000) in paragraph at lines 875--877 []\T1/pcr/m/n/10 validate_res_in_arcsec() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule Overfull \hbox (17.1711pt too wide) in paragraph at lines 875--877 \T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/ptm/m/n/10 ), Overfull \hbox (5.59027pt too wide) in paragraph at lines 877--879 []\T1/pcr/m/n/10 version() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializati on.dtkFileTools.DtkFile Overfull \hbox (81.59949pt too wide) in paragraph at lines 884--886 []\T1/pcr/m/n/10 write() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serialization .SerializedPopulation.SerializedPopulation Underfull \hbox (badness 10000) in paragraph at lines 886--887 []\T1/pcr/m/n/10 write() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 887--889 []\T1/pcr/m/n/10 write_config_from_default_and_params() Overfull \hbox (75.65076pt too wide) in paragraph at lines 887--889 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule 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