Read the Docs build information Build id: 778445 Project: tiledb-inc-tiledb-py Version: stable Commit: c4e20a93406738f4efee0458eebf7025c8bfa381 Date: 2021-11-19T16:38:03.571472Z State: finished Success: False [rtd-command-info] start-time: 2021-11-19T16:38:06.121165Z, end-time: 2021-11-19T16:38:07.622589Z, duration: 1, exit-code: 0 git clone --no-single-branch --depth 50 https://github.com/TileDB-Inc/TileDB-Py.git . Cloning into '.'... [rtd-command-info] start-time: 2021-11-19T16:38:07.785259Z, end-time: 2021-11-19T16:38:07.881977Z, duration: 0, exit-code: 0 git checkout --force c4e20a93406738f4efee0458eebf7025c8bfa381 Note: checking out 'c4e20a93406738f4efee0458eebf7025c8bfa381'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at c4e20a9 Correct Version Checker in FragmentInfo API for MBRs and Array Schema Name [rtd-command-info] start-time: 2021-11-19T16:38:07.994253Z, end-time: 2021-11-19T16:38:08.052813Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2021-11-19T16:38:09.296484Z, end-time: 2021-11-19T16:38:22.661009Z, duration: 13, exit-code: 0 python3.7 -mvirtualenv Using base prefix '/home/docs/.pyenv/versions/3.7.9' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2021-11-19T16:38:22.786736Z, end-time: 2021-11-19T16:38:24.083557Z, duration: 1, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip setuptools Requirement already satisfied: pip in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (21.3.1) Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (59.2.0) [rtd-command-info] start-time: 2021-11-19T16:38:24.213022Z, end-time: 2021-11-19T16:38:31.992213Z, duration: 7, exit-code: 0 python -m pip install --upgrade --no-cache-dir mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<2.2 Collecting mock==1.0.1 Downloading mock-1.0.1.zip (861 kB) Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.6-py2.py3-none-any.whl (3.1 MB) Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) Collecting readthedocs-sphinx-ext<2.2 Downloading readthedocs_sphinx_ext-2.1.4-py2.py3-none-any.whl (29 kB) Collecting future Downloading future-0.18.2.tar.gz (829 kB) Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting docutils>=0.11 Downloading docutils-0.18-py2.py3-none-any.whl (569 kB) Collecting Jinja2>=2.3 Downloading Jinja2-3.0.3-py3-none-any.whl (133 kB) Collecting imagesize Downloading imagesize-1.3.0-py2.py3-none-any.whl (5.2 kB) Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.2.0-py2.py3-none-any.whl (93 kB) Collecting docutils>=0.11 Downloading docutils-0.17.1-py2.py3-none-any.whl (575 kB) Collecting requests>=2.0.0 Downloading requests-2.26.0-py2.py3-none-any.whl (62 kB) Collecting six>=1.5 Downloading six-1.16.0-py2.py3-none-any.whl (11 kB) Collecting packaging Downloading packaging-21.3-py3-none-any.whl (40 kB) Collecting Pygments>=2.0 Downloading Pygments-2.10.0-py3-none-any.whl (1.0 MB) Collecting sphinxcontrib-websupport Downloading sphinxcontrib_websupport-1.2.4-py2.py3-none-any.whl (39 kB) Collecting babel!=2.0,>=1.3 Downloading Babel-2.9.1-py2.py3-none-any.whl (8.8 MB) Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from sphinx<2) (59.2.0) Collecting pytz>=2015.7 Downloading pytz-2021.3-py2.py3-none-any.whl (503 kB) Collecting MarkupSafe>=2.0 Downloading MarkupSafe-2.0.1-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (31 kB) Collecting urllib3<1.27,>=1.21.1 Downloading urllib3-1.26.7-py2.py3-none-any.whl (138 kB) Collecting certifi>=2017.4.17 Downloading certifi-2021.10.8-py2.py3-none-any.whl (149 kB) Collecting charset-normalizer~=2.0.0 Downloading charset_normalizer-2.0.7-py3-none-any.whl (38 kB) Collecting idna<4,>=2.5 Downloading idna-3.3-py3-none-any.whl (61 kB) Collecting pyparsing!=3.0.5,>=2.0.2 Downloading pyparsing-3.0.6-py3-none-any.whl (97 kB) Collecting sphinxcontrib-serializinghtml Downloading sphinxcontrib_serializinghtml-1.1.5-py2.py3-none-any.whl (94 kB) Building wheels for collected packages: mock, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23772 sha256=b48b667362137ad486f2cc192761424517f5f4eb074172f88429572eb505f945 Stored in directory: /tmp/pip-ephem-wheel-cache-wzgedo2u/wheels/7a/94/b1/0fdc5339a5bd487a5cc15421ec200d9ba3e2aa7190e4a727f1 Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491070 sha256=ab7a50b247f61cbf64c7d077a7bb5fd78a38258af73b95294ee006712ea549b8 Stored in directory: /tmp/pip-ephem-wheel-cache-wzgedo2u/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0 Successfully built mock future Installing collected packages: urllib3, sphinxcontrib-serializinghtml, pytz, pyparsing, MarkupSafe, idna, charset-normalizer, certifi, sphinxcontrib-websupport, snowballstemmer, six, requests, Pygments, packaging, Jinja2, imagesize, future, docutils, babel, alabaster, sphinx, commonmark, sphinx-rtd-theme, recommonmark, readthedocs-sphinx-ext, pillow, mock Successfully installed Jinja2-3.0.3 MarkupSafe-2.0.1 Pygments-2.10.0 alabaster-0.7.12 babel-2.9.1 certifi-2021.10.8 charset-normalizer-2.0.7 commonmark-0.8.1 docutils-0.17.1 future-0.18.2 idna-3.3 imagesize-1.3.0 mock-1.0.1 packaging-21.3 pillow-5.4.1 pyparsing-3.0.6 pytz-2021.3 readthedocs-sphinx-ext-2.1.4 recommonmark-0.5.0 requests-2.26.0 six-1.16.0 snowballstemmer-2.2.0 sphinx-1.8.6 sphinx-rtd-theme-0.4.3 sphinxcontrib-serializinghtml-1.1.5 sphinxcontrib-websupport-1.2.4 urllib3-1.26.7 [rtd-command-info] start-time: 2021-11-19T16:38:32.120165Z, end-time: 2021-11-19T16:38:38.212818Z, duration: 6, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r doc/requirements_doc.txt Ignoring contextvars: markers 'python_version < "3.7"' don't match your environment Ignoring dataclasses: markers 'python_version < "3.7"' don't match your environment Collecting cmake>=3.13 Downloading cmake-3.22.0-py2.py3-none-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (21.8 MB) Requirement already satisfied: docutils<0.18 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r doc/requirements_doc.txt (line 3)) (0.17.1) Collecting numpy>=1.16.5 Downloading numpy-1.21.4-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (15.7 MB) Collecting cython>=0.27 Downloading Cython-0.29.24-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) Collecting pybind11>=2.6.2 Downloading pybind11-2.8.1-py2.py3-none-any.whl (208 kB) Requirement already satisfied: setuptools>=18.0 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r doc/../requirements_dev.txt (line 7)) (59.2.0) Collecting setuptools_scm>=1.5.4 Downloading setuptools_scm-6.3.2-py3-none-any.whl (33 kB) Requirement already satisfied: wheel>=0.30 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r doc/../requirements_dev.txt (line 9)) (0.37.0) Requirement already satisfied: packaging>=20.0 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from setuptools_scm>=1.5.4->-r doc/../requirements_dev.txt (line 8)) (21.3) Collecting tomli>=1.0.0 Downloading tomli-1.2.2-py3-none-any.whl (12 kB) Requirement already satisfied: pyparsing!=3.0.5,>=2.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from packaging>=20.0->setuptools_scm>=1.5.4->-r doc/../requirements_dev.txt (line 8)) (3.0.6) Installing collected packages: tomli, setuptools-scm, pybind11, numpy, cython, cmake Successfully installed cmake-3.22.0 cython-0.29.24 numpy-1.21.4 pybind11-2.8.1 setuptools-scm-6.3.2 tomli-1.2.2 [rtd-command-info] start-time: 2021-11-19T16:38:38.323109Z, end-time: 2021-11-19T16:46:17.309489Z, duration: 458, exit-code: 1 python ./setup.py install --force TILEDB_PATH from env: '' libtiledb_exists checking 'library_dirs': [] libtiledb_exists found: 'None' running install running bdist_egg GNU Make 4.1 Built for x86_64-pc-linux-gnu Copyright (C) 1988-2014 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. -- The C compiler identification is GNU 7.5.0 -- The CXX compiler identification is GNU 7.5.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Starting TileDB superbuild. -- Found Bzip2: /usr/lib/x86_64-linux-gnu/libbz2.so -- Could NOT find LZ4 (missing: LZ4_LIBRARIES LZ4_INCLUDE_DIR) -- Adding LZ4 as an external project -- Could NOT find spdlog (missing: spdlog_DIR) -- Adding spdlog as an external project -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.11") -- Found Zlib, adding imported target: /usr/lib/x86_64-linux-gnu/libz.so -- Could NOT find Zstd (missing: ZSTD_LIBRARIES ZSTD_INCLUDE_DIR) -- Adding Zstd as an external project -- Could NOT find CapnProto (missing: CapnProto_DIR) -- Cap'n Proto was not found -- Adding Capnp as an external project -- Could NOT find OpenSSL, try to set the path to OpenSSL root folder in the system variable OPENSSL_ROOT_DIR: Found unsuitable version "1.0.2n", but required is at least "1.1.0" (found /usr/lib/x86_64-linux-gnu/libcrypto.so, ) -- Adding OpenSSL as an external project -- Could NOT find CURL (missing: CURL_LIBRARY CURL_INCLUDE_DIR) -- Could NOT find Curl (missing: CURL_LIBRARIES CURL_INCLUDE_DIR) -- Adding Curl as an external project -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.1") CMake Warning at cmake/Modules/FindCurl_EP.cmake:127 (message): TileDB FindZlib_EP did not set TILEDB_ZLIB_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:96 (include) CMakeLists.txt:172 (include) -- Could NOT find AWSSDK (missing: AWSSDK_DIR) -- Could NOT find AWSSDK -- Adding AWSSDK as an external project -- Not found clang-tidy -- Not found clang-format -- was unable to find clang-format -- Found Doxygen: /usr/bin/doxygen (found version "1.8.13") found components: doxygen dot -- Install prefix is /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.5.1/dist -- Configuring done -- Generating done -- Build files have been written to: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.5.1/build [ 3%] Creating directories for 'ep_spdlog' [ 3%] Creating directories for 'ep_lz4' [ 6%] Performing download step (download, verify and extract) for 'ep_lz4' [ 6%] Performing download step (download, verify and extract) for 'ep_spdlog' -- ep_spdlog download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.5.1/build/externals/src/ep_spdlog-stamp/ep_spdlog-download-*.log [ 7%] No update step for 'ep_spdlog' [ 9%] Performing patch step for 'ep_spdlog' patching file include/spdlog/logger-inl.h [ 10%] Performing configure step for 'ep_spdlog' -- ep_lz4 download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.5.1/build/externals/src/ep_lz4-stamp/ep_lz4-download-*.log [ 12%] No update step for 'ep_lz4' [ 14%] No patch step for 'ep_lz4' [ 15%] Performing configure step for 'ep_lz4' -- ep_lz4 configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.5.1/build/externals/src/ep_lz4-stamp/ep_lz4-configure-*.log [ 17%] Performing build step for 'ep_lz4' -- ep_spdlog configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.5.1/build/externals/src/ep_spdlog-stamp/ep_spdlog-configure-*.log [ 18%] Performing build step for 'ep_spdlog' -- ep_lz4 build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.5.1/build/externals/src/ep_lz4-stamp/ep_lz4-build-*.log [ 20%] Performing install step for 'ep_lz4' -- ep_lz4 install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.5.1/build/externals/src/ep_lz4-stamp/ep_lz4-install-*.log [ 21%] Completed 'ep_lz4' [ 21%] Built target ep_lz4 [ 23%] Creating directories for 'ep_zstd' [ 25%] Performing download step (download, verify and extract) for 'ep_zstd' -- ep_zstd download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.5.1/build/externals/src/ep_zstd-stamp/ep_zstd-download-*.log [ 26%] No update step for 'ep_zstd' [ 28%] No patch step for 'ep_zstd' [ 29%] Performing configure step for 'ep_zstd' -- ep_zstd configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.5.1/build/externals/src/ep_zstd-stamp/ep_zstd-configure-*.log [ 31%] Performing build step for 'ep_zstd' -- ep_spdlog build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.5.1/build/externals/src/ep_spdlog-stamp/ep_spdlog-build-*.log [ 32%] Performing install step for 'ep_spdlog' -- ep_spdlog install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.5.1/build/externals/src/ep_spdlog-stamp/ep_spdlog-install-*.log [ 34%] Completed 'ep_spdlog' [ 34%] Built target ep_spdlog [ 35%] Creating directories for 'ep_capnp' [ 37%] Performing download step (download, verify and extract) for 'ep_capnp' -- ep_capnp download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.5.1/build/externals/src/ep_capnp-stamp/ep_capnp-download-*.log [ 39%] No update step for 'ep_capnp' [ 40%] No patch step for 'ep_capnp' [ 42%] Performing configure step for 'ep_capnp' -- ep_capnp configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.5.1/build/externals/src/ep_capnp-stamp/ep_capnp-configure-*.log [ 43%] Performing build step for 'ep_capnp' -- ep_zstd build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.5.1/build/externals/src/ep_zstd-stamp/ep_zstd-build-*.log [ 45%] Performing install step for 'ep_zstd' -- ep_zstd install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.5.1/build/externals/src/ep_zstd-stamp/ep_zstd-install-*.log [ 46%] Completed 'ep_zstd' [ 46%] Built target ep_zstd [ 48%] Creating directories for 'ep_openssl' [ 50%] Performing download step (download, verify and extract) for 'ep_openssl' -- ep_openssl download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.5.1/build/externals/src/ep_openssl-stamp/ep_openssl-download-*.log [ 51%] No update step for 'ep_openssl' [ 53%] No patch step for 'ep_openssl' [ 54%] Performing configure step for 'ep_openssl' -- ep_openssl configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.5.1/build/externals/src/ep_openssl-stamp/ep_openssl-configure-*.log [ 56%] Performing build step for 'ep_openssl' -- ep_capnp build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.5.1/build/externals/src/ep_capnp-stamp/ep_capnp-build-*.log [ 57%] Performing install step for 'ep_capnp' -- ep_capnp install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.5.1/build/externals/src/ep_capnp-stamp/ep_capnp-install-*.log [ 59%] Completed 'ep_capnp' [ 59%] Built target ep_capnp -- ep_openssl build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.5.1/build/externals/src/ep_openssl-stamp/ep_openssl-build-*.log [ 60%] Performing install step for 'ep_openssl' -- ep_openssl install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.5.1/build/externals/src/ep_openssl-stamp/ep_openssl-install-*.log [ 62%] Completed 'ep_openssl' [ 62%] Built target ep_openssl [ 64%] Creating directories for 'ep_curl' [ 65%] Performing download step (download, verify and extract) for 'ep_curl' -- ep_curl download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.5.1/build/externals/src/ep_curl-stamp/ep_curl-download-*.log [ 67%] No update step for 'ep_curl' [ 68%] No patch step for 'ep_curl' [ 70%] Performing configure step for 'ep_curl' -- ep_curl configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.5.1/build/externals/src/ep_curl-stamp/ep_curl-configure-*.log [ 71%] Performing build step for 'ep_curl' -- ep_curl build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.5.1/build/externals/src/ep_curl-stamp/ep_curl-build-*.log [ 73%] Performing install step for 'ep_curl' -- ep_curl install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.5.1/build/externals/src/ep_curl-stamp/ep_curl-install-*.log [ 75%] Completed 'ep_curl' [ 75%] Built target ep_curl [ 76%] Creating directories for 'ep_awssdk' [ 78%] Performing download step (download, verify and extract) for 'ep_awssdk' -- ep_awssdk download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.5.1/build/externals/src/ep_awssdk-stamp/ep_awssdk-download-*.log [ 79%] No update step for 'ep_awssdk' [ 81%] Performing patch step for 'ep_awssdk' patching file third-party/CMakeLists.txt [ 82%] Performing configure step for 'ep_awssdk' -- ep_awssdk configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.5.1/build/externals/src/ep_awssdk-stamp/ep_awssdk-configure-*.log [ 84%] Performing build step for 'ep_awssdk' -- ep_awssdk build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.5.1/build/externals/src/ep_awssdk-stamp/ep_awssdk-build-*.log [ 85%] Performing install step for 'ep_awssdk' -- ep_awssdk install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.5.1/build/externals/src/ep_awssdk-stamp/ep_awssdk-install-*.log [ 87%] Completed 'ep_awssdk' [ 87%] Built target ep_awssdk [ 89%] Creating directories for 'tiledb' [ 90%] No download step for 'tiledb' [ 92%] No update step for 'tiledb' [ 93%] No patch step for 'tiledb' [ 95%] Performing configure step for 'tiledb' -- The C compiler identification is GNU 7.5.0 -- The CXX compiler identification is GNU 7.5.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Starting TileDB regular build. -- Performing Test HAVE_AVX2 -- Performing Test HAVE_AVX2 - Success -- The TileDB library is compiled with stats enabled. -- The TileDB library is compiled with query serialization enabled. -- Looking for pthread.h -- Looking for pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Found OpenSSL: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.5.1/build/externals/install/lib/libcrypto.a (found suitable version "1.1.1i", minimum required is "1.1.0") -- Found OpenSSL: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.5.1/build/externals/install/lib/libssl.a -- OpenSSL crypto: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.5.1/build/externals/install/lib/libcrypto.a -- root: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.5.1/build/externals/install;/usr/local/opt/openssl -- The TileDB library is compiled with S3 support. CMake Error at build/externals/install/lib/cmake/AWSSDK/AWSSDKConfig.cmake:119 (while): had incorrect arguments: "NOT" "TEMP_NAME" "STREQUAL" Unknown arguments specified Call Stack (most recent call first): cmake/Modules/FindAWSSDK_EP.cmake:56 (find_package) tiledb/CMakeLists.txt:360 (find_package) -- Configuring incomplete, errors occurred! See also "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.5.1/build/tiledb/CMakeFiles/CMakeOutput.log". See also "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.5.1/build/tiledb/CMakeFiles/CMakeError.log". make[2]: *** [tiledb-prefix/src/tiledb-stamp/tiledb-configure] Error 1 CMakeFiles/tiledb.dir/build.make:98: recipe for target 'tiledb-prefix/src/tiledb-stamp/tiledb-configure' failed make[1]: *** [CMakeFiles/tiledb.dir/all] Error 2 CMakeFiles/Makefile2:288: recipe for target 'CMakeFiles/tiledb.dir/all' failed Makefile:90: recipe for target 'all' failed make: *** [all] Error 2 /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/setuptools_scm/git.py:94: UserWarning: "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable" is shallow and may cause errors warnings.warn(f'"{wd.path}" is shallow and may cause errors') /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. setuptools.SetuptoolsDeprecationWarning, /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/setuptools/command/easy_install.py:159: EasyInstallDeprecationWarning: easy_install command is deprecated. Use build and pip and other standards-based tools. EasyInstallDeprecationWarning, ext_modules: [, ] tiledb_ext: main_ext: tiledb_ext.library_dirs: [] libtiledb_exists checking 'library_dirs': [] libtiledb_exists found: 'None' Downloading TileDB package from 2.5.1... Building libtiledb in directory /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.5.1/build... CMake configure command: ['cmake', '-DCMAKE_INSTALL_PREFIX=/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.5.1/dist', '-DTILEDB_TESTS=OFF', '-DTILEDB_S3=ON', '-DTILEDB_WERROR=OFF', '-DTILEDB_HDFS=ON', '-DTILEDB_INSTALL_LIBDIR=lib', '-DTILEDB_CPP_API=ON', '-DTILEDB_LOG_OUTPUT_ON_FAILURE=ON', '-DTILEDB_FORCE_ALL_DEPS:BOOL=OFF', '-DTILEDB_SERIALIZATION:BOOL=ON', '-DCMAKE_BUILD_TYPE=Release', '/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.5.1'] Traceback (most recent call last): File "./setup.py", line 732, in "Programming Language :: Python :: 3.9", File "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/setuptools/__init__.py", line 153, in setup return distutils.core.setup(**attrs) File "/home/docs/.pyenv/versions/3.7.9/lib/python3.7/distutils/core.py", line 148, in setup dist.run_commands() File "/home/docs/.pyenv/versions/3.7.9/lib/python3.7/distutils/dist.py", line 966, in run_commands self.run_command(cmd) File "/home/docs/.pyenv/versions/3.7.9/lib/python3.7/distutils/dist.py", line 985, in run_command cmd_obj.run() File "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/setuptools/command/install.py", line 74, in run self.do_egg_install() File "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/setuptools/command/install.py", line 116, in do_egg_install self.run_command('bdist_egg') File "/home/docs/.pyenv/versions/3.7.9/lib/python3.7/distutils/cmd.py", line 313, in run_command self.distribution.run_command(command) File "/home/docs/.pyenv/versions/3.7.9/lib/python3.7/distutils/dist.py", line 985, in run_command cmd_obj.run() File "./setup.py", line 450, in run find_or_install_libtiledb(self) File "./setup.py", line 270, in find_or_install_libtiledb prefix_dir = build_libtiledb(src_dir) File "./setup.py", line 236, in build_libtiledb subprocess.check_call(build_cmd, cwd=libtiledb_build_dir) File "/home/docs/.pyenv/versions/3.7.9/lib/python3.7/subprocess.py", line 363, in check_call raise CalledProcessError(retcode, cmd) subprocess.CalledProcessError: Command '['make', '-j2']' returned non-zero exit status 2.