Read the Docs build information Build id: 777537 Project: institute-for-disease-modeling-emod-api Version: latest Commit: e4e0b753d4401fa3868bb0e2453b017b7ba3b793 Date: 2021-11-18T21:51:57.016995Z State: finished Success: True [rtd-command-info] start-time: 2021-11-18T21:52:01.102737Z, end-time: 2021-11-18T21:52:07.417275Z, duration: 6, exit-code: 0 git clone --no-single-branch --depth 50 git@github.com:InstituteforDiseaseModeling/emod-api.git . Cloning into '.'... Warning: Permanently added 'github.com,192.30.255.112' (ECDSA) to the list of known hosts. [rtd-command-info] start-time: 2021-11-18T21:52:07.589760Z, end-time: 2021-11-18T21:52:07.815424Z, duration: 0, exit-code: 0 git checkout --force origin/master Note: checking out 'origin/master'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at e4e0b75 Bump version: 1.16.11 → 1.16.12 [rtd-command-info] start-time: 2021-11-18T21:52:07.929987Z, end-time: 2021-11-18T21:52:07.995336Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2021-11-18T21:52:09.854258Z, end-time: 2021-11-18T21:52:23.379877Z, duration: 13, exit-code: 0 python3.7 -mvirtualenv --system-site-packages Using base prefix '/home/docs/.pyenv/versions/3.7.9' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2021-11-18T21:52:23.532738Z, end-time: 2021-11-18T21:52:24.932552Z, duration: 1, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip setuptools Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/simple Requirement already satisfied: pip in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (21.3.1) Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (59.1.1) [rtd-command-info] start-time: 2021-11-18T21:52:25.040469Z, end-time: 2021-11-18T21:52:35.102274Z, duration: 10, exit-code: 0 python -m pip install --upgrade --no-cache-dir -I mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<2.2 Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/simple Collecting mock==1.0.1 Downloading mock-1.0.1.zip (861 kB) Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.6-py2.py3-none-any.whl (3.1 MB) Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) Collecting readthedocs-sphinx-ext<2.2 Downloading readthedocs_sphinx_ext-2.1.4-py2.py3-none-any.whl (29 kB) Collecting future Downloading future-0.18.2.tar.gz (829 kB) Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting docutils>=0.11 Downloading docutils-0.18-py2.py3-none-any.whl (569 kB) Collecting Pygments>=2.0 Downloading Pygments-2.10.0-py3-none-any.whl (1.0 MB) Collecting requests>=2.0.0 Downloading requests-2.26.0-py2.py3-none-any.whl (62 kB) Collecting sphinxcontrib-websupport Downloading sphinxcontrib_websupport-1.2.4-py2.py3-none-any.whl (39 kB) Collecting docutils>=0.11 Downloading docutils-0.17.1-py2.py3-none-any.whl (575 kB) Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.2.0-py2.py3-none-any.whl (93 kB) Collecting six>=1.5 Downloading six-1.16.0-py2.py3-none-any.whl (11 kB) Collecting packaging Downloading packaging-21.3-py3-none-any.whl (40 kB) Collecting babel!=2.0,>=1.3 Downloading Babel-2.9.1-py2.py3-none-any.whl (8.8 MB) Collecting imagesize Downloading imagesize-1.3.0-py2.py3-none-any.whl (5.2 kB) Collecting setuptools Downloading setuptools-59.1.1-py3-none-any.whl (951 kB) Collecting Jinja2>=2.3 Downloading Jinja2-3.0.3-py3-none-any.whl (133 kB) Collecting pytz>=2015.7 Downloading pytz-2021.3-py2.py3-none-any.whl (503 kB) Collecting MarkupSafe>=2.0 Downloading MarkupSafe-2.0.1-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (31 kB) Collecting idna<4,>=2.5 Downloading idna-3.3-py3-none-any.whl (61 kB) Collecting certifi>=2017.4.17 Downloading certifi-2021.10.8-py2.py3-none-any.whl (149 kB) Collecting urllib3<1.27,>=1.21.1 Downloading urllib3-1.26.7-py2.py3-none-any.whl (138 kB) Collecting charset-normalizer~=2.0.0 Downloading charset_normalizer-2.0.7-py3-none-any.whl (38 kB) Collecting pyparsing!=3.0.5,>=2.0.2 Downloading pyparsing-3.0.6-py3-none-any.whl (97 kB) Collecting sphinxcontrib-serializinghtml Downloading sphinxcontrib_serializinghtml-1.1.5-py2.py3-none-any.whl (94 kB) Building wheels for collected packages: mock, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23772 sha256=53738f26c5bccefda9629853be292320ad26acee94cc94a619a9d4694d6e5bb6 Stored in directory: /tmp/pip-ephem-wheel-cache-8nb2j98u/wheels/7a/94/b1/0fdc5339a5bd487a5cc15421ec200d9ba3e2aa7190e4a727f1 Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491070 sha256=86e955fdd399bafc2e0dd6d0139bd51939086bc41261cba384cebdcdcd79622c Stored in directory: /tmp/pip-ephem-wheel-cache-8nb2j98u/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0 Successfully built mock future Installing collected packages: urllib3, sphinxcontrib-serializinghtml, pytz, pyparsing, MarkupSafe, idna, charset-normalizer, certifi, sphinxcontrib-websupport, snowballstemmer, six, setuptools, requests, Pygments, packaging, Jinja2, imagesize, future, docutils, babel, alabaster, sphinx, commonmark, sphinx-rtd-theme, recommonmark, readthedocs-sphinx-ext, pillow, mock ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts. matplotlib 3.3.2 requires pillow>=6.2.0, but you have pillow 5.4.1 which is incompatible. Successfully installed Jinja2-3.0.3 MarkupSafe-2.0.1 Pygments-2.10.0 alabaster-0.7.12 babel-2.9.1 certifi-2021.10.8 charset-normalizer-2.0.7 commonmark-0.8.1 docutils-0.17.1 future-0.18.2 idna-3.3 imagesize-1.3.0 mock-1.0.1 packaging-21.3 pillow-5.4.1 pyparsing-3.0.6 pytz-2021.3 readthedocs-sphinx-ext-2.1.4 recommonmark-0.5.0 requests-2.26.0 setuptools-59.1.1 six-1.16.0 snowballstemmer-2.2.0 sphinx-1.8.6 sphinx-rtd-theme-0.4.3 sphinxcontrib-serializinghtml-1.1.5 sphinxcontrib-websupport-1.2.4 urllib3-1.26.7 [rtd-command-info] start-time: 2021-11-18T21:52:35.213656Z, end-time: 2021-11-18T21:52:40.954171Z, duration: 5, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r requirements.txt Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/simple Requirement already satisfied: numpy!=1.19.4 in /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages (from -r requirements.txt (line 1)) (1.19.2) Collecting lz4 Downloading lz4-3.1.3-cp37-cp37m-manylinux2010_x86_64.whl (1.8 MB) Collecting pyyaml Downloading PyYAML-6.0-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (596 kB) Requirement already satisfied: pandas in /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages (from -r requirements.txt (line 4)) (1.1.3) Requirement already satisfied: scipy in /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages (from -r requirements.txt (line 5)) (1.5.3) Collecting shapely Downloading Shapely-1.8.0-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.whl (1.1 MB) Collecting pyproj Downloading pyproj-3.2.1-cp37-cp37m-manylinux2010_x86_64.whl (6.3 MB) Collecting geographiclib Downloading geographiclib-1.52-py3-none-any.whl (38 kB) Collecting sklearn Downloading sklearn-0.0.tar.gz (1.1 kB) Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Requirement already satisfied: pytz>=2017.2 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from pandas->-r requirements.txt (line 4)) (2021.3) Requirement already satisfied: python-dateutil>=2.7.3 in /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages (from pandas->-r requirements.txt (line 4)) (2.8.1) Requirement already satisfied: certifi in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from pyproj->-r requirements.txt (line 7)) (2021.10.8) Collecting scikit-learn Downloading scikit_learn-1.0.1-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (23.2 MB) Requirement already satisfied: six>=1.5 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from python-dateutil>=2.7.3->pandas->-r requirements.txt (line 4)) (1.16.0) Collecting joblib>=0.11 Downloading joblib-1.1.0-py2.py3-none-any.whl (306 kB) Collecting threadpoolctl>=2.0.0 Downloading threadpoolctl-3.0.0-py3-none-any.whl (14 kB) Building wheels for collected packages: sklearn Building wheel for sklearn (setup.py): started Building wheel for sklearn (setup.py): finished with status 'done' Created wheel for sklearn: filename=sklearn-0.0-py2.py3-none-any.whl size=1309 sha256=de62b05cacd32205780ed4e9210f8933cb69357bea3ff3e2cc222135bc77a116 Stored in directory: /tmp/pip-ephem-wheel-cache-3uvoig9a/wheels/46/ef/c3/157e41f5ee1372d1be90b09f74f82b10e391eaacca8f22d33e Successfully built sklearn Installing collected packages: threadpoolctl, joblib, scikit-learn, sklearn, shapely, pyyaml, pyproj, lz4, geographiclib Successfully installed geographiclib-1.52 joblib-1.1.0 lz4-3.1.3 pyproj-3.2.1 pyyaml-6.0 scikit-learn-1.0.1 shapely-1.8.0 sklearn-0.0 threadpoolctl-3.0.0 [rtd-command-info] start-time: 2021-11-18T21:52:41.068320Z, end-time: 2021-11-18T21:52:47.588629Z, duration: 6, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r docs/requirements.txt Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/simple Collecting sphinx-rtd-theme~=0.5.0 Downloading sphinx_rtd_theme-0.5.2-py2.py3-none-any.whl (9.1 MB) Collecting sphinxcontrib-napoleon~=0.7 Downloading sphinxcontrib_napoleon-0.7-py2.py3-none-any.whl (17 kB) Collecting sphinx~=3.2.1 Downloading Sphinx-3.2.1-py3-none-any.whl (2.9 MB) Collecting plantweb~=1.2.1 Downloading plantweb-1.2.1-py3-none-any.whl (20 kB) Collecting sphinxcontrib-programoutput~=0.16 Downloading sphinxcontrib_programoutput-0.17-py2.py3-none-any.whl (22 kB) Collecting py-make Downloading py_make-0.1.1-py2.py3-none-any.whl (9.4 kB) Collecting PyGithub~=1.51 Downloading PyGithub-1.55-py3-none-any.whl (291 kB) Collecting pygit2~=1.2.1 Downloading pygit2-1.2.1-cp37-cp37m-manylinux2010_x86_64.whl (3.0 MB) Collecting sphinxext.remoteliteralinclude Downloading sphinxext_remoteliteralinclude-0.3.0-py3-none-any.whl (6.3 kB) Collecting sphinx-copybutton~=0.4.0 Downloading sphinx_copybutton-0.4.0-py3-none-any.whl (12 kB) Collecting docutils<0.17 Downloading docutils-0.16-py2.py3-none-any.whl (548 kB) Requirement already satisfied: six>=1.5.2 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from sphinxcontrib-napoleon~=0.7->-r docs/requirements.txt (line 2)) (1.16.0) Collecting pockets>=0.3 Downloading pockets-0.9.1-py2.py3-none-any.whl (26 kB) Requirement already satisfied: Pygments>=2.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from sphinx~=3.2.1->-r docs/requirements.txt (line 3)) (2.10.0) Collecting sphinxcontrib-htmlhelp Downloading sphinxcontrib_htmlhelp-2.0.0-py2.py3-none-any.whl (100 kB) Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from sphinx~=3.2.1->-r docs/requirements.txt (line 3)) (59.1.1) Requirement already satisfied: packaging in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from sphinx~=3.2.1->-r docs/requirements.txt (line 3)) (21.3) Requirement already satisfied: imagesize in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from sphinx~=3.2.1->-r docs/requirements.txt (line 3)) (1.3.0) Collecting sphinxcontrib-devhelp Downloading sphinxcontrib_devhelp-1.0.2-py2.py3-none-any.whl (84 kB) Collecting sphinxcontrib-qthelp Downloading sphinxcontrib_qthelp-1.0.3-py2.py3-none-any.whl (90 kB) Requirement already satisfied: Jinja2>=2.3 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from sphinx~=3.2.1->-r docs/requirements.txt (line 3)) (3.0.3) Requirement already satisfied: snowballstemmer>=1.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from sphinx~=3.2.1->-r docs/requirements.txt (line 3)) (2.2.0) Collecting sphinxcontrib-applehelp Downloading sphinxcontrib_applehelp-1.0.2-py2.py3-none-any.whl (121 kB) Collecting sphinxcontrib-jsmath Downloading sphinxcontrib_jsmath-1.0.1-py2.py3-none-any.whl (5.1 kB) Requirement already satisfied: alabaster<0.8,>=0.7 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from sphinx~=3.2.1->-r docs/requirements.txt (line 3)) (0.7.12) Requirement already satisfied: requests>=2.5.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from sphinx~=3.2.1->-r docs/requirements.txt (line 3)) (2.26.0) Requirement already satisfied: babel>=1.3 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from sphinx~=3.2.1->-r docs/requirements.txt (line 3)) (2.9.1) Requirement already satisfied: sphinxcontrib-serializinghtml in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from sphinx~=3.2.1->-r docs/requirements.txt (line 3)) (1.1.5) Collecting docopt>=0.6.0 Downloading docopt-0.6.2.tar.gz (25 kB) Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting pyjwt>=2.0 Downloading PyJWT-2.3.0-py3-none-any.whl (16 kB) Collecting deprecated Downloading Deprecated-1.2.13-py2.py3-none-any.whl (9.6 kB) Collecting pynacl>=1.4.0 Downloading PyNaCl-1.4.0-cp35-abi3-manylinux1_x86_64.whl (961 kB) Collecting cffi>=1.4.0 Downloading cffi-1.15.0-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (427 kB) Collecting cached-property Downloading cached_property-1.5.2-py2.py3-none-any.whl (7.6 kB) Requirement already satisfied: pytz>=2015.7 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from babel>=1.3->sphinx~=3.2.1->-r docs/requirements.txt (line 3)) (2021.3) Collecting pycparser Downloading pycparser-2.21-py2.py3-none-any.whl (118 kB) Requirement already satisfied: MarkupSafe>=2.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from Jinja2>=2.3->sphinx~=3.2.1->-r docs/requirements.txt (line 3)) (2.0.1) Requirement already satisfied: certifi>=2017.4.17 in 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(2.0.7) Collecting wrapt<2,>=1.10 Downloading wrapt-1.13.3-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (79 kB) Requirement already satisfied: pyparsing!=3.0.5,>=2.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from packaging->sphinx~=3.2.1->-r docs/requirements.txt (line 3)) (3.0.6) Building wheels for collected packages: docopt Building wheel for docopt (setup.py): started Building wheel for docopt (setup.py): finished with status 'done' Created wheel for docopt: filename=docopt-0.6.2-py2.py3-none-any.whl size=13724 sha256=2e5eecfdd6cf99ae45ee312408fbead5d7d2a5868c4a107e4a3599ff4001bd91 Stored in directory: /tmp/pip-ephem-wheel-cache-1ej4vcdp/wheels/72/b0/3f/1d95f96ff986c7dfffe46ce2be4062f38ebd04b506c77c81b9 Successfully built docopt Installing collected packages: pycparser, wrapt, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, docutils, cffi, sphinx, pynacl, pyjwt, pockets, docopt, deprecated, cached-property, sphinxext.remoteliteralinclude, sphinxcontrib-programoutput, sphinxcontrib-napoleon, sphinx-rtd-theme, sphinx-copybutton, PyGithub, pygit2, py-make, plantweb Attempting uninstall: docutils Found existing installation: docutils 0.17.1 Uninstalling docutils-0.17.1: Successfully uninstalled docutils-0.17.1 Attempting uninstall: sphinx Found existing installation: Sphinx 1.8.6 Uninstalling Sphinx-1.8.6: Successfully uninstalled Sphinx-1.8.6 Attempting uninstall: sphinx-rtd-theme Found existing installation: sphinx-rtd-theme 0.4.3 Uninstalling sphinx-rtd-theme-0.4.3: Successfully uninstalled sphinx-rtd-theme-0.4.3 Successfully installed PyGithub-1.55 cached-property-1.5.2 cffi-1.15.0 deprecated-1.2.13 docopt-0.6.2 docutils-0.16 plantweb-1.2.1 pockets-0.9.1 py-make-0.1.1 pycparser-2.21 pygit2-1.2.1 pyjwt-2.3.0 pynacl-1.4.0 sphinx-3.2.1 sphinx-copybutton-0.4.0 sphinx-rtd-theme-0.5.2 sphinxcontrib-applehelp-1.0.2 sphinxcontrib-devhelp-1.0.2 sphinxcontrib-htmlhelp-2.0.0 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-napoleon-0.7 sphinxcontrib-programoutput-0.17 sphinxcontrib-qthelp-1.0.3 sphinxext.remoteliteralinclude-0.3.0 wrapt-1.13.3 [rtd-command-info] start-time: 2021-11-18T21:52:47.712746Z, end-time: 2021-11-18T21:52:48.654855Z, duration: 0, exit-code: 0 python ./setup.py install --force running install running bdist_egg running egg_info creating emod_api.egg-info writing emod_api.egg-info/PKG-INFO writing dependency_links to emod_api.egg-info/dependency_links.txt writing requirements to emod_api.egg-info/requires.txt writing top-level names to emod_api.egg-info/top_level.txt writing manifest file 'emod_api.egg-info/SOURCES.txt' reading manifest file 'emod_api.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. setuptools.SetuptoolsDeprecationWarning, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages/setuptools/command/easy_install.py:159: EasyInstallDeprecationWarning: easy_install command is deprecated. Use build and pip and other standards-based tools. EasyInstallDeprecationWarning, warning: no directories found matching 'emod_api/tests/data/*' warning: no directories found matching 'emod_api/dtk_tools/serialization/test-data/*' adding license file 'LICENSE' writing manifest file 'emod_api.egg-info/SOURCES.txt' installing library code to build/bdist.linux-x86_64/egg running install_lib running build_py creating build creating build/lib creating build/lib/emod_api copying emod_api/__main__.py -> build/lib/emod_api copying emod_api/__init__.py -> build/lib/emod_api copying emod_api/campaign.py -> build/lib/emod_api copying emod_api/schema_to_class.py -> build/lib/emod_api creating build/lib/examples copying examples/spatial_report.py -> build/lib/examples copying examples/weather_file.py -> build/lib/examples copying examples/write_config_from_default_and_params.py -> build/lib/examples copying examples/intervention_from_schema.py -> build/lib/examples copying examples/default_from_schema.py -> build/lib/examples copying examples/migration.py -> build/lib/examples copying examples/serialized_file_mc_to_sc.py -> build/lib/examples copying examples/__init__.py -> build/lib/examples copying examples/some_config_i_found.py -> build/lib/examples copying examples/insetchart.py -> build/lib/examples creating build/lib/emod_api/schema copying emod_api/schema/dtk_post_process_schema.py -> build/lib/emod_api/schema copying emod_api/schema/__main__.py -> build/lib/emod_api/schema copying emod_api/schema/get_schema.py -> build/lib/emod_api/schema copying emod_api/schema/__init__.py -> build/lib/emod_api/schema creating build/lib/emod_api/tabularoutput copying emod_api/tabularoutput/__main__.py -> build/lib/emod_api/tabularoutput copying emod_api/tabularoutput/__init__.py -> build/lib/emod_api/tabularoutput creating build/lib/emod_api/config copying emod_api/config/from_poi_and_binary.py -> build/lib/emod_api/config copying emod_api/config/from_schema.py -> build/lib/emod_api/config copying emod_api/config/dtk_post_process_adhocevents.py -> build/lib/emod_api/config copying emod_api/config/from_overrides.py -> build/lib/emod_api/config copying emod_api/config/default_from_schema.py -> build/lib/emod_api/config copying emod_api/config/__main__.py -> build/lib/emod_api/config copying emod_api/config/default_from_schema_no_validation.py -> build/lib/emod_api/config copying emod_api/config/schema_to_config.py -> build/lib/emod_api/config copying emod_api/config/dtk_pre_process_adhocevents.py -> build/lib/emod_api/config copying emod_api/config/__init__.py -> build/lib/emod_api/config copying emod_api/config/dtk_pre_process_w5ml.py -> build/lib/emod_api/config creating build/lib/emod_api/spatialreports copying emod_api/spatialreports/spatial.py -> build/lib/emod_api/spatialreports copying emod_api/spatialreports/__main__.py -> build/lib/emod_api/spatialreports copying emod_api/spatialreports/__init__.py -> build/lib/emod_api/spatialreports creating build/lib/emod_api/weather copying emod_api/weather/weather.py -> build/lib/emod_api/weather copying emod_api/weather/__main__.py -> build/lib/emod_api/weather copying emod_api/weather/__init__.py -> build/lib/emod_api/weather creating build/lib/emod_api/serialization copying emod_api/serialization/dtkFileSupport.py -> build/lib/emod_api/serialization copying emod_api/serialization/__main__.py -> build/lib/emod_api/serialization copying emod_api/serialization/dtkFileUtility.py -> build/lib/emod_api/serialization copying emod_api/serialization/dtkFileTools.py -> build/lib/emod_api/serialization copying emod_api/serialization/SerializedPopulation.py -> build/lib/emod_api/serialization copying emod_api/serialization/__init__.py -> build/lib/emod_api/serialization copying emod_api/serialization/CensusAndModPop.py -> build/lib/emod_api/serialization creating build/lib/emod_api/interventions copying emod_api/interventions/simple_vaccine.py -> build/lib/emod_api/interventions copying emod_api/interventions/import_pressure.py -> build/lib/emod_api/interventions copying emod_api/interventions/utils.py -> build/lib/emod_api/interventions copying emod_api/interventions/__main__.py -> build/lib/emod_api/interventions copying emod_api/interventions/outbreak.py -> build/lib/emod_api/interventions copying emod_api/interventions/__init__.py -> build/lib/emod_api/interventions copying emod_api/interventions/node_multiplier.py -> build/lib/emod_api/interventions copying emod_api/interventions/common.py -> build/lib/emod_api/interventions creating build/lib/emod_api/migration copying emod_api/migration/migration.py -> build/lib/emod_api/migration copying emod_api/migration/__main__.py -> build/lib/emod_api/migration copying emod_api/migration/__init__.py -> build/lib/emod_api/migration creating build/lib/emod_api/demographics copying emod_api/demographics/DemographicsInputDataParsers.py -> build/lib/emod_api/demographics copying emod_api/demographics/PreDefinedDistributions.py -> build/lib/emod_api/demographics copying emod_api/demographics/Node.py -> build/lib/emod_api/demographics copying emod_api/demographics/__main__.py -> build/lib/emod_api/demographics copying emod_api/demographics/DemographicsGenerator.py -> build/lib/emod_api/demographics copying emod_api/demographics/demographics_utils.py -> build/lib/emod_api/demographics copying emod_api/demographics/Demographics.py -> build/lib/emod_api/demographics copying emod_api/demographics/grid_construction.py -> build/lib/emod_api/demographics copying emod_api/demographics/BaseInputFile.py -> build/lib/emod_api/demographics copying emod_api/demographics/DemographicsTemplates.py -> build/lib/emod_api/demographics copying emod_api/demographics/PropertiesAndAttributes.py -> build/lib/emod_api/demographics copying emod_api/demographics/Updateable.py -> build/lib/emod_api/demographics copying emod_api/demographics/__init__.py -> build/lib/emod_api/demographics creating build/lib/emod_api/channelreports copying emod_api/channelreports/channels.py -> build/lib/emod_api/channelreports copying emod_api/channelreports/__main__.py -> build/lib/emod_api/channelreports copying emod_api/channelreports/__init__.py -> build/lib/emod_api/channelreports creating build/lib/emod_api/migration/client copying emod_api/migration/client/client.py -> build/lib/emod_api/migration/client copying emod_api/migration/client/__init__.py -> build/lib/emod_api/migration/client creating build/lib/tests creating build/lib/tests/unittests copying tests/unittests/test_version.py -> build/lib/tests/unittests copying tests/unittests/test_schema_imports.py -> build/lib/tests/unittests copying tests/unittests/test_demographics_imports.py -> build/lib/tests/unittests copying tests/unittests/test_migration_imports.py -> build/lib/tests/unittests copying tests/unittests/test_config_imports.py -> build/lib/tests/unittests copying tests/unittests/__init__.py -> build/lib/tests/unittests creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/egg creating build/bdist.linux-x86_64/egg/emod_api creating build/bdist.linux-x86_64/egg/emod_api/schema copying build/lib/emod_api/schema/dtk_post_process_schema.py -> build/bdist.linux-x86_64/egg/emod_api/schema copying build/lib/emod_api/schema/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/schema copying build/lib/emod_api/schema/get_schema.py -> build/bdist.linux-x86_64/egg/emod_api/schema copying build/lib/emod_api/schema/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/schema creating build/bdist.linux-x86_64/egg/emod_api/tabularoutput copying build/lib/emod_api/tabularoutput/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/tabularoutput copying build/lib/emod_api/tabularoutput/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/tabularoutput creating build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/from_poi_and_binary.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/from_schema.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/dtk_post_process_adhocevents.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/from_overrides.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/default_from_schema.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/default_from_schema_no_validation.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/schema_to_config.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/dtk_pre_process_adhocevents.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/dtk_pre_process_w5ml.py -> build/bdist.linux-x86_64/egg/emod_api/config creating build/bdist.linux-x86_64/egg/emod_api/spatialreports copying build/lib/emod_api/spatialreports/spatial.py -> build/bdist.linux-x86_64/egg/emod_api/spatialreports copying build/lib/emod_api/spatialreports/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/spatialreports copying build/lib/emod_api/spatialreports/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/spatialreports creating build/bdist.linux-x86_64/egg/emod_api/weather copying build/lib/emod_api/weather/weather.py -> build/bdist.linux-x86_64/egg/emod_api/weather copying build/lib/emod_api/weather/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/weather copying build/lib/emod_api/weather/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/weather copying build/lib/emod_api/__main__.py -> build/bdist.linux-x86_64/egg/emod_api creating build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/dtkFileSupport.py -> build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/dtkFileUtility.py -> build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/dtkFileTools.py -> build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/SerializedPopulation.py -> build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/CensusAndModPop.py -> build/bdist.linux-x86_64/egg/emod_api/serialization creating build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/simple_vaccine.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/import_pressure.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/utils.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/outbreak.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/node_multiplier.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/common.py -> build/bdist.linux-x86_64/egg/emod_api/interventions creating build/bdist.linux-x86_64/egg/emod_api/migration copying build/lib/emod_api/migration/migration.py -> build/bdist.linux-x86_64/egg/emod_api/migration copying build/lib/emod_api/migration/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/migration copying build/lib/emod_api/migration/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/migration creating build/bdist.linux-x86_64/egg/emod_api/migration/client copying build/lib/emod_api/migration/client/client.py -> build/bdist.linux-x86_64/egg/emod_api/migration/client copying build/lib/emod_api/migration/client/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/migration/client creating build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/DemographicsInputDataParsers.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/PreDefinedDistributions.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/Node.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/DemographicsGenerator.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/demographics_utils.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/Demographics.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/grid_construction.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/BaseInputFile.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/DemographicsTemplates.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/PropertiesAndAttributes.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/Updateable.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/__init__.py -> build/bdist.linux-x86_64/egg/emod_api copying build/lib/emod_api/campaign.py -> build/bdist.linux-x86_64/egg/emod_api creating build/bdist.linux-x86_64/egg/emod_api/channelreports copying build/lib/emod_api/channelreports/channels.py -> build/bdist.linux-x86_64/egg/emod_api/channelreports copying build/lib/emod_api/channelreports/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/channelreports copying build/lib/emod_api/channelreports/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/channelreports copying build/lib/emod_api/schema_to_class.py -> build/bdist.linux-x86_64/egg/emod_api creating build/bdist.linux-x86_64/egg/examples copying build/lib/examples/spatial_report.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/weather_file.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/write_config_from_default_and_params.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/intervention_from_schema.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/default_from_schema.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/migration.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/serialized_file_mc_to_sc.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/__init__.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/some_config_i_found.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/insetchart.py -> build/bdist.linux-x86_64/egg/examples creating build/bdist.linux-x86_64/egg/tests creating build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_version.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_schema_imports.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_demographics_imports.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_migration_imports.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_config_imports.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/__init__.py -> build/bdist.linux-x86_64/egg/tests/unittests byte-compiling build/bdist.linux-x86_64/egg/emod_api/schema/dtk_post_process_schema.py to dtk_post_process_schema.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/schema/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/schema/get_schema.py to get_schema.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/schema/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/tabularoutput/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/tabularoutput/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/from_poi_and_binary.py to from_poi_and_binary.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/from_schema.py to from_schema.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/dtk_post_process_adhocevents.py to dtk_post_process_adhocevents.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/from_overrides.py to from_overrides.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/default_from_schema.py to default_from_schema.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/default_from_schema_no_validation.py to default_from_schema_no_validation.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/schema_to_config.py to schema_to_config.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/dtk_pre_process_adhocevents.py to dtk_pre_process_adhocevents.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/dtk_pre_process_w5ml.py to dtk_pre_process_w5ml.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/spatialreports/spatial.py to spatial.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/spatialreports/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/spatialreports/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/weather/weather.py to weather.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/weather/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/weather/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/dtkFileSupport.py to dtkFileSupport.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/dtkFileUtility.py to dtkFileUtility.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/dtkFileTools.py to dtkFileTools.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/SerializedPopulation.py to SerializedPopulation.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/CensusAndModPop.py to CensusAndModPop.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/simple_vaccine.py to simple_vaccine.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/import_pressure.py to import_pressure.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/utils.py to utils.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/outbreak.py to outbreak.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/node_multiplier.py to node_multiplier.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/common.py to common.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/migration/migration.py to migration.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/migration/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/migration/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/migration/client/client.py to client.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/migration/client/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/DemographicsInputDataParsers.py to DemographicsInputDataParsers.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/PreDefinedDistributions.py to PreDefinedDistributions.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/Node.py to Node.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/DemographicsGenerator.py to DemographicsGenerator.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/demographics_utils.py to demographics_utils.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/Demographics.py to Demographics.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/grid_construction.py to grid_construction.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/BaseInputFile.py to BaseInputFile.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/DemographicsTemplates.py to DemographicsTemplates.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/PropertiesAndAttributes.py to PropertiesAndAttributes.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/Updateable.py to Updateable.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/campaign.py to campaign.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/channelreports/channels.py to channels.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/channelreports/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/channelreports/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/schema_to_class.py to schema_to_class.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/spatial_report.py to spatial_report.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/weather_file.py to weather_file.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/write_config_from_default_and_params.py to write_config_from_default_and_params.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/intervention_from_schema.py to intervention_from_schema.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/default_from_schema.py to default_from_schema.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/migration.py to migration.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/serialized_file_mc_to_sc.py to serialized_file_mc_to_sc.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/some_config_i_found.py to some_config_i_found.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/insetchart.py to insetchart.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_version.py to test_version.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_schema_imports.py to test_schema_imports.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_demographics_imports.py to test_demographics_imports.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_migration_imports.py to test_migration_imports.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_config_imports.py to test_config_imports.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/__init__.py to __init__.cpython-37.pyc creating build/bdist.linux-x86_64/egg/EGG-INFO copying emod_api.egg-info/PKG-INFO -> build/bdist.linux-x86_64/egg/EGG-INFO copying emod_api.egg-info/SOURCES.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying emod_api.egg-info/dependency_links.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying emod_api.egg-info/requires.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying emod_api.egg-info/top_level.txt -> build/bdist.linux-x86_64/egg/EGG-INFO zip_safe flag not set; analyzing archive contents... emod_api.config.__pycache__.from_poi_and_binary.cpython-37: module references __file__ emod_api.serialization.__pycache__.dtkFileTools.cpython-37: module references __file__ emod_api.serialization.__pycache__.dtkFileUtility.cpython-37: module references __file__ examples.__pycache__.insetchart.cpython-37: module references __file__ examples.__pycache__.spatial_report.cpython-37: module references __file__ examples.__pycache__.weather_file.cpython-37: module references __file__ creating dist creating 'dist/emod_api-1.16.12-py3.7.egg' and adding 'build/bdist.linux-x86_64/egg' to it removing 'build/bdist.linux-x86_64/egg' (and everything under it) Processing emod_api-1.16.12-py3.7.egg creating /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages/emod_api-1.16.12-py3.7.egg Extracting emod_api-1.16.12-py3.7.egg to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Adding emod-api 1.16.12 to easy-install.pth file Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages/emod_api-1.16.12-py3.7.egg Processing dependencies for emod-api==1.16.12 Searching for sklearn==0.0 Best match: sklearn 0.0 Adding sklearn 0.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for geographiclib==1.52 Best match: geographiclib 1.52 Adding geographiclib 1.52 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for pyproj==3.2.1 Best match: pyproj 3.2.1 Adding pyproj 3.2.1 to easy-install.pth file Installing pyproj script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for Shapely==1.8.0 Best match: Shapely 1.8.0 Adding Shapely 1.8.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for scipy==1.5.3 Best match: scipy 1.5.3 Adding scipy 1.5.3 to easy-install.pth file Using /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages Searching for pandas==1.1.3 Best match: pandas 1.1.3 pandas 1.1.3 is already the active version in easy-install.pth Using /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages Searching for PyYAML==6.0 Best match: PyYAML 6.0 Adding PyYAML 6.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for lz4==3.1.3 Best match: lz4 3.1.3 Adding lz4 3.1.3 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for numpy==1.19.2 Best match: numpy 1.19.2 numpy 1.19.2 is already the active version in easy-install.pth Installing f2py script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin Installing f2py3 script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin Installing f2py3.7 script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin Using /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages Searching for scikit-learn==1.0.1 Best match: scikit-learn 1.0.1 Adding scikit-learn 1.0.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for certifi==2021.10.8 Best match: certifi 2021.10.8 Adding certifi 2021.10.8 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for pytz==2021.3 Best match: pytz 2021.3 Adding pytz 2021.3 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for python-dateutil==2.8.1 Best match: python-dateutil 2.8.1 python-dateutil 2.8.1 is already the active version in easy-install.pth Using /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages Searching for threadpoolctl==3.0.0 Best match: threadpoolctl 3.0.0 Adding threadpoolctl 3.0.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for joblib==1.1.0 Best match: joblib 1.1.0 Adding joblib 1.1.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for six==1.16.0 Best match: six 1.16.0 Adding six 1.16.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Finished processing dependencies for emod-api==1.16.12 [rtd-command-info] start-time: 2021-11-18T21:52:50.718048Z, end-time: 2021-11-18T21:52:50.795267Z, duration: 0, exit-code: 0 cat docs/conf.py # -*- coding: utf-8 -*- # # Sphinx Demo docs build configuration file, created by # sphinx-quickstart on Fri Aug 26 16:52:16 2016. # # This file is execfile()d with the current directory set to its # containing dir. # # Note that not all possible configuration values are present in this # autogenerated file. # # All configuration values have a default; values that are commented out # serve to show the default. # If extensions (or modules to document with autodoc) are in another directory, # add these directories to sys.path here. If the directory is relative to the # docs root, use os.path.abspath to make it absolute, like shown here. # import os import subprocess import sys import sphinx_rtd_theme import configparser from datetime import datetime if sys.platform in ["linux", "darwin"]: subprocess.check_output(["make", "generate-api"], cwd=os.path.dirname(os.path.abspath(__file__))) else: subprocess.check_output(["make.bat", "generate-api"], cwd=os.path.dirname(os.path.abspath(__file__))) # -- General configuration ------------------------------------------------ tags.add('emodapi') # If your docs needs a minimal Sphinx version, state it here. # # needs_sphinx = '1.0' # Add any Sphinx extension module names here, as strings. They can be # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom # ones. extensions = [ 'sphinx.ext.mathjax', 'sphinx.ext.githubpages', 'sphinx.ext.autodoc', 'sphinxcontrib.napoleon', 'sphinx.ext.todo', 'plantweb.directive', 'sphinxcontrib.programoutput', 'sphinx_copybutton', 'sphinx.ext.intersphinx', 'sphinxext.remoteliteralinclude' ] plantuml = 'plantweb' autodoc_default_options = { 'member-order': 'bysource', 'members': None, 'exclude-members': '__all__' } autodoc_mock_imports = ['emod_api.dtk_tools'] napoleon_google_docstring = True # napoleon_numpy_docstring = True # Add any paths that contain templates here, relative to this directory. templates_path = ['_templates'] # The suffix(es) of source filenames. # You can specify multiple suffix as a list of string: # # source_suffix = ['.rst', '.md'] source_suffix = '.rst' # The encoding of source files. # # source_encoding = 'utf-8-sig' # The master toctree document. master_doc = 'index' # General information about the project. project = u'emod-api' copyright = f'1999 - {datetime.today().year}, Bill & Melinda Gates Foundation. All rights reserved.' author = u'Institute for Disease Modeling' # The version info for the project you're documenting, acts as replacement for # |version| and |release|, also used in various other places throughout the # built documents. # # The short X.Y version. #current_path = os.path.dirname(__file__) #version_path = os.path.join(current_path, '..', '.bumpversion.cfg') #config = configparser.ConfigParser() #config.read(version_path) #version = config['bumpversion']['current_version'] # The full version, including alpha/beta/rc tags. # release = u'1.0' # The language for content autogenerated by Sphinx. Refer to docs # for a list of supported languages. # # This is also used if you do content translation via gettext catalogs. # Usually you set "language" from the command line for these cases. language = None # There are two options for replacing |today|: either, you set today to some # non-false value, then it is used: # # today = '' # # Else, today_fmt is used as the format for a strftime call. # # today_fmt = '%B %d, %Y' # List of patterns, relative to source directory, that match files and # directories to ignore when looking for source files. # This patterns also effect to html_static_path and html_extra_path exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store'] # The reST default role (used for this markup: `text`) to use for all # documents. # # default_role = None # If true, '()' will be appended to :func: etc. cross-reference text. # # add_function_parentheses = True # If true, the current module name will be prepended to all description # unit titles (such as .. function::). # # add_module_names = True # If true, sectionauthor and moduleauthor directives will be shown in the # output. They are ignored by default. # # show_authors = False # The name of the Pygments (syntax highlighting) style to use. pygments_style = 'sphinx' # A list of ignored prefixes for module index sorting. # modindex_common_prefix = [] # If true, keep warnings as "system message" paragraphs in the built documents. # keep_warnings = False # If true, `todo` and `todoList` produce output, else they produce nothing. todo_include_todos = False # RST epilog is added to the end of every topic. Useful for replace # directives to use across the docset. rst_epilog = "\n.. include:: /variables.txt" # -- Options for HTML output ---------------------------------------------- # The theme to use for HTML and HTML Help pages. See the docs for # a list of builtin themes. # html_theme = 'sphinx_rtd_theme' # Theme options are theme-specific and customize the look and feel of a theme # further. For a list of options available for each theme, see the # docs. # # # html_theme_options = { # } # Add any paths that contain custom themes here, relative to this directory. html_theme_path = [sphinx_rtd_theme.get_html_theme_path()] # The name for this set of Sphinx documents. # " v docs" by default. # # html_title = u'Sphinx Demo v1.0' # A shorter title for the navigation bar. Default is the same as html_title. # # html_short_title = None # The name of an image file (relative to this directory) to place at the top # of the sidebar. # html_logo = "images/IDM_white.png" # The name of an image file (relative to this directory) to use as a favicon of # the docs. This file should be a Windows icon file (.ico) being 16x16 or 32x32 # pixels large. # html_favicon = "images/favicon.ico" # Add any paths that contain custom static files (such as style sheets) here, # relative to this directory. They are copied after the builtin static files, # so a file named "default.css" will overwrite the builtin "default.css". html_static_path = ['_static'] html_context = { 'css_files': [ '_static/theme_overrides.css', '_static/copy_button.css' ] } html_js_files = ['show_block_by_os.js'] # Add any extra paths that contain custom files (such as robots.txt or # .htaccess) here, relative to this directory. These files are copied # directly to the root of the docs. # # html_extra_path = [] # If not None, a 'Last updated on:' timestamp is inserted at every page # bottom, using the given strftime format. # The empty string is equivalent to '%b %d, %Y'. # # html_last_updated_fmt = None # If true, SmartyPants will be used to convert quotes and dashes to # typographically correct entities. # # html_use_smartypants = True # Custom sidebar templates, maps document names to template names. # # html_sidebars = {} # Additional templates that should be rendered to pages, maps page names to # template names. # # html_additional_pages = {} # If false, no module index is generated. # # html_domain_indices = True # If false, no index is generated. # # html_use_index = True # If true, the index is split into individual pages for each letter. # # html_split_index = False # If true, links to the reST sources are added to the pages. # html_show_sourcelink = False # If true, "Created using Sphinx" is shown in the HTML footer. Default is True. # html_show_sphinx = False # If true, "(C) Copyright ..." is shown in the HTML footer. Default is True. # # html_show_copyright = True # If true, an OpenSearch description file will be output, and all pages will # contain a tag referring to it. The value of this option must be the # base URL from which the finished HTML is served. # html_use_opensearch = 'www.idmod.org/docs/' # This is the file name suffix for HTML files (e.g. ".xhtml"). # html_file_suffix = None # Language to be used for generating the HTML full-text search index. # Sphinx supports the following languages: # 'da', 'de', 'en', 'es', 'fi', 'fr', 'hu', 'it', 'ja' # 'nl', 'no', 'pt', 'ro', 'ru', 'sv', 'tr', 'zh' # # html_search_language = 'en' # A dictionary with options for the search language support, empty by default. # 'ja' uses this config value. # 'zh' user can custom change `jieba` dictionary path. # # html_search_options = {'type': 'default'} # The name of a javascript file (relative to the configuration directory) that # implements a search results scorer. If empty, the default will be used. # # html_search_scorer = 'scorer.js' # Output file base name for HTML help builder. htmlhelp_basename = 'EMOD-API' # -- Options for LaTeX output --------------------------------------------- latex_elements = { # The paper size ('letterpaper' or 'a4paper'). # # 'papersize': 'letterpaper', # The font size ('10pt', '11pt' or '12pt'). # # 'pointsize': '10pt', # Additional stuff for the LaTeX preamble. # # 'preamble': '', # Latex figure (float) alignment # # 'figure_align': 'htbp', } # Grouping the document tree into LaTeX files. List of tuples # (source start file, target name, title, # author, documentclass [howto, manual, or own class]). latex_documents = [ (master_doc, 'emod-api-docs.tex', u'emod-api', u'Institute for Disease Modeling', 'manual'), ] # The name of an image file (relative to this directory) to place at the top of # the title page. # # latex_logo = None # For "manual" documents, if this is true, then toplevel headings are parts, # not chapters. # # latex_use_parts = False # If true, show page references after internal links. # # latex_show_pagerefs = False # If true, show URL addresses after external links. # # latex_show_urls = False # Documents to append as an appendix to all manuals. # # latex_appendices = [] # It false, will not define \strong, \code, itleref, \crossref ... but only # \sphinxstrong, ..., \sphinxtitleref, ... To help avoid clash with user added # packages. # # latex_keep_old_macro_names = True # If false, no module index is generated. # # latex_domain_indices = True # -- Options for manual page output --------------------------------------- # One entry per manual page. List of tuples # (source start file, name, description, authors, manual section). man_pages = [ (master_doc, 'emod-api-docs', u'emod-api', [author], 1) ] # If true, show URL addresses after external links. # man_show_urls = True # -- Options for Texinfo output ------------------------------------------- # Grouping the document tree into Texinfo files. List of tuples # (source start file, target name, title, author, # dir menu entry, description, category) texinfo_documents = [ (master_doc, 'emod-api-docs', u'emod-api', author, 'Institute for Disease Modeling', 'How to use emodpy for disease simulations.', 'Miscellaneous'), ] # Documents to append as an appendix to all manuals. # # texinfo_appendices = [] # If false, no module index is generated. # # texinfo_domain_indices = True # How to display URL addresses: 'footnote', 'no', or 'inline'. # # texinfo_show_urls = 'footnote' # If true, do not generate a @detailmenu in the "Top" node's menu. # # texinfo_no_detailmenu = False # Example configuration for intersphinx: refer to the Python standard library. intersphinx_mapping = {'python': ('https://docs.python.org/3', None), 'emodpy': ('https://docs.idmod.org/projects/emodpy/en/latest/', None), 'idmtools': ('https://docs.idmod.org/projects/idmtools/en/latest/', None), 'pycomps': ('https://docs.idmod.org/projects/pycomps/en/latest/', None) } ########################################################################### # auto-created readthedocs.org specific configuration # ########################################################################### # # The following code was added during an automated build on readthedocs.org # It is auto created and injected for every build. The result is based on the # conf.py.tmpl file found in the readthedocs.org codebase: # https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl # # Note: this file shouldn't rely on extra dependencies. import importlib import sys import os.path # Borrowed from six. PY3 = sys.version_info[0] == 3 string_types = str if PY3 else basestring from sphinx import version_info # Get suffix for proper linking to GitHub # This is deprecated in Sphinx 1.3+, # as each page can have its own suffix if globals().get('source_suffix', False): if isinstance(source_suffix, string_types): SUFFIX = source_suffix elif isinstance(source_suffix, (list, tuple)): # Sphinx >= 1.3 supports list/tuple to define multiple suffixes SUFFIX = source_suffix[0] elif isinstance(source_suffix, dict): # Sphinx >= 1.8 supports a mapping dictionary for multiple suffixes SUFFIX = list(source_suffix.keys())[0] # make a ``list()`` for py2/py3 compatibility else: # default to .rst SUFFIX = '.rst' else: SUFFIX = '.rst' # Add RTD Static Path. Add to the end because it overwrites previous files. if not 'html_static_path' in globals(): html_static_path = [] if os.path.exists('_static'): html_static_path.append('_static') # Add RTD Theme only if they aren't overriding it already using_rtd_theme = ( ( 'html_theme' in globals() and html_theme in ['default'] and # Allow people to bail with a hack of having an html_style 'html_style' not in globals() ) or 'html_theme' not in globals() ) if using_rtd_theme: theme = importlib.import_module('sphinx_rtd_theme') html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} if 'html_theme_path' in globals(): html_theme_path.append(theme.get_html_theme_path()) else: html_theme_path = [theme.get_html_theme_path()] if globals().get('websupport2_base_url', False): websupport2_base_url = 'https://readthedocs.com/websupport' websupport2_static_url = 'https://assets.readthedocs.com/' #Add project information to the template context. context = { 'using_theme': using_rtd_theme, 'html_theme': html_theme, 'current_version': "latest", 'version_slug': "latest", 'MEDIA_URL': "https://media.readthedocs.com/media/", 'STATIC_URL': "https://assets.readthedocs.com/", 'PRODUCTION_DOMAIN': "readthedocs.com", 'versions': [ ("latest", "/en/latest/"), ("v1.16.10", "/en/v1.16.10/"), ("v1.16.5", "/en/v1.16.5/"), ("v1.16.2", "/en/v1.16.2/"), ("v1.15.6", "/en/v1.15.6/"), ("v1.15.4", "/en/v1.15.4/"), ("v1.15.1", "/en/v1.15.1/"), ("v1.14.7", "/en/v1.14.7/"), ("v1.14.1", "/en/v1.14.1/"), ("v1.13.1", "/en/v1.13.1/"), ("v1.12.1", "/en/v1.12.1/"), ("v1.11.7", "/en/v1.11.7/"), ("v1.11.4", "/en/v1.11.4/"), ("v1.11.0", "/en/v1.11.0/"), ("v1.10.8", "/en/v1.10.8/"), ("v1.10.6", "/en/v1.10.6/"), ("v1.10.5", "/en/v1.10.5/"), ("v1.10.3", "/en/v1.10.3/"), ("v1.10.2", "/en/v1.10.2/"), ("v1.9.2", "/en/v1.9.2/"), ("v1.9.1", "/en/v1.9.1/"), ("v1.8.9", "/en/v1.8.9/"), ("v1.8.8", "/en/v1.8.8/"), ("v1.8.6", "/en/v1.8.6/"), ("v1.8.2", "/en/v1.8.2/"), ("v1.7.5", "/en/v1.7.5/"), ("v1.7.4", "/en/v1.7.4/"), ("v1.7.1", "/en/v1.7.1/"), ("v1.6.3", "/en/v1.6.3/"), ("v1.5.1", "/en/v1.5.1/"), ("v1.5.0", "/en/v1.5.0/"), ], 'downloads': [ ("pdf", "//docs.idmod.org/_/downloads/emod-api/en/latest/pdf/"), ("html", "//docs.idmod.org/_/downloads/emod-api/en/latest/htmlzip/"), ], 'subprojects': [ ], 'slug': 'institute-for-disease-modeling-emod-api', 'name': u'emod-api', 'rtd_language': u'en', 'programming_language': u'py', 'canonical_url': 'https://docs.idmod.org/projects/emod-api/en/latest/', 'analytics_code': 'UA-87656833-3', 'single_version': False, 'conf_py_path': '/docs/', 'api_host': 'https://readthedocs.com', 'github_user': 'InstituteforDiseaseModeling', 'proxied_api_host': '/_', 'github_repo': 'emod-api', 'github_version': 'master', 'display_github': True, 'bitbucket_user': 'None', 'bitbucket_repo': 'None', 'bitbucket_version': 'master', 'display_bitbucket': False, 'gitlab_user': 'None', 'gitlab_repo': 'None', 'gitlab_version': 'master', 'display_gitlab': False, 'READTHEDOCS': True, 'using_theme': (html_theme == "default"), 'new_theme': (html_theme == "sphinx_rtd_theme"), 'source_suffix': SUFFIX, 'ad_free': False, 'docsearch_disabled': False, 'user_analytics_code': 'UA-87656833-3', 'global_analytics_code': 'UA-17997319-2', 'commit': 'e4e0b753', } # For sphinx >=1.8 we can use html_baseurl to set the canonical URL. # https://www.sphinx-doc.org/en/master/usage/configuration.html#confval-html_baseurl if version_info >= (1, 8): if not globals().get('html_baseurl'): html_baseurl = context['canonical_url'] context['canonical_url'] = None if 'html_context' in globals(): html_context.update(context) else: html_context = context # Add custom RTD extension if 'extensions' in globals(): # Insert at the beginning because it can interfere # with other extensions. # See https://github.com/rtfd/readthedocs.org/pull/4054 extensions.insert(0, "readthedocs_ext.readthedocs") else: extensions = ["readthedocs_ext.readthedocs"] # Add External version warning banner to the external version documentation if 'branch' == 'external': extensions.insert(1, "readthedocs_ext.external_version_warning") readthedocs_vcs_url = 'None' readthedocs_build_url = 'https://readthedocs.com/projects/institute-for-disease-modeling-emod-api/builds/777537/' project_language = 'en' # User's Sphinx configurations language_user = globals().get('language', None) latex_engine_user = globals().get('latex_engine', None) latex_elements_user = globals().get('latex_elements', None) # Remove this once xindy gets installed in Docker image and XINDYOPS # env variable is supported # https://github.com/rtfd/readthedocs-docker-images/pull/98 latex_use_xindy = False chinese = any([ language_user in ('zh_CN', 'zh_TW'), project_language in ('zh_CN', 'zh_TW'), ]) japanese = any([ language_user == 'ja', project_language == 'ja', ]) if chinese: latex_engine = latex_engine_user or 'xelatex' latex_elements_rtd = { 'preamble': '\\usepackage[UTF8]{ctex}\n', } latex_elements = latex_elements_user or latex_elements_rtd elif japanese: latex_engine = latex_engine_user or 'platex' # Make sure our build directory is always excluded exclude_patterns = globals().get('exclude_patterns', []) exclude_patterns.extend(['_build']) [rtd-command-info] start-time: 2021-11-18T21:52:50.908326Z, end-time: 2021-11-18T21:53:10.611700Z, duration: 19, exit-code: 0 python -m sphinx -T -E -W --keep-going -b html -d _build/doctrees -D language=en . _build/html Running Sphinx v3.2.1 rm: cannot remove 'emod_api_index.rst': No such file or directory rm: cannot remove 'modules.rst': No such file or directory make: [generate-api] Error 1 (ignored) loading translations [en]... done making output directory... done loading intersphinx inventory from https://docs.python.org/3/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emodpy/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/idmtools/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/pycomps/en/latest/objects.inv... building [mo]: targets for 0 po files that are out of date building [html]: targets for 57 source files that are out of date updating environment: [new config] 57 added, 0 changed, 0 removed reading sources... [ 1%] emod_api reading sources... [ 3%] emod_api.campaign reading sources... [ 5%] emod_api.channelreports reading sources... [ 7%] emod_api.channelreports.channels reading sources... [ 8%] emod_api.config reading sources... [ 10%] emod_api.config.default_from_schema reading sources... [ 12%] emod_api.config.default_from_schema_no_validation reading sources... [ 14%] emod_api.config.dtk_post_process_adhocevents reading sources... [ 15%] emod_api.config.dtk_pre_process_adhocevents reading sources... [ 17%] emod_api.config.dtk_pre_process_w5ml reading sources... [ 19%] emod_api.config.from_overrides reading sources... [ 21%] emod_api.config.from_poi_and_binary reading sources... [ 22%] emod_api.config.from_schema reading sources... [ 24%] emod_api.config.schema_to_config emod_api.config.schema_to_config is deprecated. Please use emod_api.config.from_schema. reading sources... [ 26%] emod_api.demographics reading sources... [ 28%] emod_api.demographics.BaseInputFile reading sources... [ 29%] emod_api.demographics.Demographics reading sources... [ 31%] emod_api.demographics.DemographicsGenerator reading sources... [ 33%] emod_api.demographics.DemographicsInputDataParsers reading sources... [ 35%] emod_api.demographics.DemographicsTemplates reading sources... [ 36%] emod_api.demographics.Node reading sources... [ 38%] emod_api.demographics.PreDefinedDistributions reading sources... [ 40%] emod_api.demographics.PropertiesAndAttributes reading sources... [ 42%] emod_api.demographics.Updateable reading sources... [ 43%] emod_api.demographics.demographics_utils reading sources... [ 45%] emod_api.demographics.grid_construction reading sources... [ 47%] emod_api.interventions reading sources... [ 49%] emod_api.interventions.common reading sources... [ 50%] emod_api.interventions.import_pressure reading sources... [ 52%] emod_api.interventions.node_multiplier reading sources... [ 54%] emod_api.interventions.outbreak reading sources... [ 56%] emod_api.interventions.simple_vaccine reading sources... [ 57%] emod_api.interventions.utils reading sources... [ 59%] emod_api.migration reading sources... [ 61%] emod_api.migration.client reading sources... [ 63%] emod_api.migration.client.client reading sources... [ 64%] emod_api.migration.migration reading sources... [ 66%] emod_api.schema reading sources... [ 68%] emod_api.schema.dtk_post_process_schema reading sources... [ 70%] emod_api.schema.get_schema reading sources... [ 71%] emod_api.schema_to_class reading sources... [ 73%] emod_api.serialization reading sources... [ 75%] emod_api.serialization.CensusAndModPop reading sources... [ 77%] emod_api.serialization.SerializedPopulation reading sources... [ 78%] emod_api.serialization.dtkFileSupport reading sources... [ 80%] emod_api.serialization.dtkFileTools reading sources... [ 82%] emod_api.serialization.dtkFileUtility reading sources... [ 84%] emod_api.spatialreports reading sources... [ 85%] emod_api.spatialreports.spatial reading sources... [ 87%] emod_api.tabularoutput reading sources... [ 89%] emod_api.weather reading sources... [ 91%] emod_api.weather.weather reading sources... [ 92%] emod_api_index reading sources... [ 94%] faq reading sources... [ 96%] glossary reading sources... [ 98%] index reading sources... [100%] installation looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 1%] emod_api writing output... [ 3%] emod_api.campaign writing output... [ 5%] emod_api.channelreports writing output... [ 7%] emod_api.channelreports.channels writing output... [ 8%] emod_api.config writing output... [ 10%] emod_api.config.default_from_schema writing output... [ 12%] emod_api.config.default_from_schema_no_validation writing output... [ 14%] emod_api.config.dtk_post_process_adhocevents writing output... [ 15%] emod_api.config.dtk_pre_process_adhocevents writing output... [ 17%] emod_api.config.dtk_pre_process_w5ml writing output... [ 19%] emod_api.config.from_overrides writing output... [ 21%] emod_api.config.from_poi_and_binary writing output... [ 22%] emod_api.config.from_schema writing output... [ 24%] emod_api.config.schema_to_config writing output... [ 26%] emod_api.demographics writing output... [ 28%] emod_api.demographics.BaseInputFile writing output... [ 29%] emod_api.demographics.Demographics writing output... [ 31%] emod_api.demographics.DemographicsGenerator writing output... [ 33%] emod_api.demographics.DemographicsInputDataParsers writing output... [ 35%] emod_api.demographics.DemographicsTemplates writing output... [ 36%] emod_api.demographics.Node writing output... [ 38%] emod_api.demographics.PreDefinedDistributions writing output... [ 40%] emod_api.demographics.PropertiesAndAttributes writing output... [ 42%] emod_api.demographics.Updateable writing output... [ 43%] emod_api.demographics.demographics_utils writing output... [ 45%] emod_api.demographics.grid_construction writing output... [ 47%] emod_api.interventions writing output... [ 49%] emod_api.interventions.common writing output... [ 50%] emod_api.interventions.import_pressure writing output... [ 52%] emod_api.interventions.node_multiplier writing output... [ 54%] emod_api.interventions.outbreak writing output... [ 56%] emod_api.interventions.simple_vaccine writing output... [ 57%] emod_api.interventions.utils writing output... [ 59%] emod_api.migration writing output... [ 61%] emod_api.migration.client writing output... [ 63%] emod_api.migration.client.client writing output... [ 64%] emod_api.migration.migration writing output... [ 66%] emod_api.schema writing output... [ 68%] emod_api.schema.dtk_post_process_schema writing output... [ 70%] emod_api.schema.get_schema writing output... [ 71%] emod_api.schema_to_class writing output... [ 73%] emod_api.serialization writing output... [ 75%] emod_api.serialization.CensusAndModPop writing output... [ 77%] emod_api.serialization.SerializedPopulation writing output... [ 78%] emod_api.serialization.dtkFileSupport writing output... [ 80%] emod_api.serialization.dtkFileTools writing output... [ 82%] emod_api.serialization.dtkFileUtility writing output... [ 84%] emod_api.spatialreports writing output... [ 85%] emod_api.spatialreports.spatial writing output... [ 87%] emod_api.tabularoutput writing output... [ 89%] emod_api.weather writing output... [ 91%] emod_api.weather.weather writing output... [ 92%] emod_api_index writing output... [ 94%] faq writing output... [ 96%] glossary writing output... [ 98%] index writing output... [100%] installation generating indices... genindex py-modindexdone writing additional pages... search opensearchdone copying static files... ... done copying extra files... done dumping search index in English (code: en)... done dumping object inventory... done build succeeded. The HTML pages are in _build/html. Updating searchtools for Read the Docs search... /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/importlib/_bootstrap.py:219: RuntimeWarning: numpy.ufunc size changed, may indicate binary incompatibility. Expected 192 from C header, got 216 from PyObject return f(*args, **kwds) [rtd-command-info] start-time: 2021-11-18T21:53:10.755253Z, end-time: 2021-11-18T21:53:13.062344Z, duration: 2, exit-code: 0 python -m sphinx -T -W --keep-going -b readthedocssinglehtmllocalmedia -d _build/doctrees -D language=en . _build/localmedia Running Sphinx v3.2.1 rm: cannot remove 'modules.rst': No such file or directory make: [generate-api] Error 1 (ignored) loading translations [en]... done making output directory... done loading pickled environment... done building [mo]: targets for 0 po files that are out of date building [readthedocssinglehtmllocalmedia]: all documents updating environment: 0 added, 1 changed, 0 removed reading sources... [100%] emod_api_index looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done assembling single document... installation faq emod_api_index emod_api emod_api.channelreports emod_api.channelreports.channels emod_api.config emod_api.config.default_from_schema emod_api.config.default_from_schema_no_validation emod_api.config.dtk_post_process_adhocevents emod_api.config.dtk_pre_process_adhocevents emod_api.config.dtk_pre_process_w5ml emod_api.config.from_overrides emod_api.config.from_poi_and_binary emod_api.config.from_schema emod_api.config.schema_to_config emod_api.demographics emod_api.demographics.BaseInputFile emod_api.demographics.Demographics emod_api.demographics.DemographicsGenerator emod_api.demographics.DemographicsInputDataParsers emod_api.demographics.DemographicsTemplates emod_api.demographics.Node emod_api.demographics.PreDefinedDistributions emod_api.demographics.PropertiesAndAttributes emod_api.demographics.Updateable emod_api.demographics.demographics_utils emod_api.demographics.grid_construction emod_api.interventions emod_api.interventions.common emod_api.interventions.import_pressure emod_api.interventions.node_multiplier emod_api.interventions.outbreak emod_api.interventions.simple_vaccine emod_api.interventions.utils emod_api.migration emod_api.migration.client emod_api.migration.client.client emod_api.migration.migration emod_api.schema emod_api.schema.dtk_post_process_schema emod_api.schema.get_schema emod_api.serialization emod_api.serialization.CensusAndModPop emod_api.serialization.SerializedPopulation emod_api.serialization.dtkFileSupport emod_api.serialization.dtkFileTools emod_api.serialization.dtkFileUtility emod_api.spatialreports emod_api.spatialreports.spatial emod_api.tabularoutput emod_api.weather emod_api.weather.weather emod_api.campaign emod_api.schema_to_class glossary done writing... done writing additional files... opensearchdone copying static files... ... done copying extra files... done dumping object inventory... done build succeeded. The HTML page is in _build/localmedia. Updating searchtools for Read the Docs search... [rtd-command-info] start-time: 2021-11-18T21:53:13.230890Z, end-time: 2021-11-18T21:53:15.408674Z, duration: 2, exit-code: 0 python -m sphinx -b latex -D language=en -d _build/doctrees . _build/latex Running Sphinx v3.2.1 rm: cannot remove 'modules.rst': No such file or directory make: [generate-api] Error 1 (ignored) loading translations [en]... done making output directory... done loading pickled environment... done building [mo]: targets for 0 po files that are out of date building [latex]: all documents updating environment: 0 added, 1 changed, 0 removed reading sources... [100%] emod_api_index looking for now-outdated files... none found pickling environment... done checking consistency... done processing emod-api-docs.tex... index installation faq emod_api_index emod_api emod_api.channelreports emod_api.channelreports.channels emod_api.config emod_api.config.default_from_schema emod_api.config.default_from_schema_no_validation emod_api.config.dtk_post_process_adhocevents emod_api.config.dtk_pre_process_adhocevents emod_api.config.dtk_pre_process_w5ml emod_api.config.from_overrides emod_api.config.from_poi_and_binary emod_api.config.from_schema emod_api.config.schema_to_config emod_api.demographics emod_api.demographics.BaseInputFile emod_api.demographics.Demographics emod_api.demographics.DemographicsGenerator emod_api.demographics.DemographicsInputDataParsers emod_api.demographics.DemographicsTemplates emod_api.demographics.Node emod_api.demographics.PreDefinedDistributions emod_api.demographics.PropertiesAndAttributes emod_api.demographics.Updateable emod_api.demographics.demographics_utils emod_api.demographics.grid_construction emod_api.interventions emod_api.interventions.common emod_api.interventions.import_pressure emod_api.interventions.node_multiplier emod_api.interventions.outbreak emod_api.interventions.simple_vaccine emod_api.interventions.utils emod_api.migration emod_api.migration.client emod_api.migration.client.client emod_api.migration.migration emod_api.schema emod_api.schema.dtk_post_process_schema emod_api.schema.get_schema emod_api.serialization emod_api.serialization.CensusAndModPop emod_api.serialization.SerializedPopulation emod_api.serialization.dtkFileSupport emod_api.serialization.dtkFileTools emod_api.serialization.dtkFileUtility emod_api.spatialreports emod_api.spatialreports.spatial emod_api.tabularoutput emod_api.weather emod_api.weather.weather emod_api.campaign emod_api.schema_to_class glossary resolving references... done writing... done copying TeX support files... copying TeX support files... done build succeeded. The LaTeX files are in _build/latex. Run 'make' in that directory to run these through (pdf)latex (use `make latexpdf' here to do that automatically). WARNING: Missing searchtools: /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/checkouts/latest/docs/_build/latex/_static/searchtools.js [rtd-command-info] start-time: 2021-11-18T21:53:15.657797Z, end-time: 2021-11-18T21:53:15.722554Z, duration: 0, exit-code: 0 cat latexmkrc $latex = 'latex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $pdflatex = 'pdflatex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $lualatex = 'lualatex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $xelatex = 'xelatex --no-pdf ' . $ENV{'LATEXOPTS'} . ' %O %S'; $makeindex = 'makeindex -s python.ist %O -o %D %S'; add_cus_dep( "glo", "gls", 0, "makeglo" ); sub makeglo { return system( "makeindex -s gglo.ist -o '$_[0].gls' '$_[0].glo'" ); } [rtd-command-info] start-time: 2021-11-18T21:53:15.850534Z, end-time: 2021-11-18T21:53:29.656849Z, duration: 13, exit-code: 0 latexmk -r latexmkrc -pdf -f -dvi- -ps- -jobname=institute-for-disease-modeling-emod-api -interaction=nonstopmode Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 1, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 2, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 3, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 4, chunk 1. Subroutine makeglo redefined at (eval 11) line 7, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 1, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 2, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 3, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 4, chunk 1. Latexmk: This is Latexmk, John Collins, 1 January 2015, version: 4.41. File::Glob::glob() will disappear in perl 5.30. Use File::Glob::bsd_glob() instead. at /usr/bin/latexmk line 7482. 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(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) [3] [4] Chapter 2. Underfull \hbox (badness 10000) in paragraph at lines 227--231 []\T1/ptm/m/n/10 Sure. [5] [6] Chapter 3. 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torConcern.DemographicsGeneratorConcern, Overfull \hbox (429.49101pt too wide) in paragraph at lines 1225--1225 \T1/ptm/m/it/10 List[emod_api.dtk_tools.demographics.DemographicsGeneratorConce rn.DemographicsGeneratorConcern]]] Underfull \hbox (badness 10000) in paragraph at lines 1225--1225 \T1/ptm/m/it/10 = Overfull \hbox (10.85487pt too wide) in paragraph at lines 1225--1225 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (84.4637pt too wide) in paragraph at lines 1225--1225 \T1/ptm/m/it/10 res_in_arcsec=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 custom\TS1/ptm/ m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (115.46402pt too wide) in paragraph at lines 1225--1225 \T1/ptm/m/it/10 node_id_from_lat_long=False\T1/pcr/m/n/10 ) [15] Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 []\T1/ptm/m/it/10 df\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-mo-graph- Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 ics_filename: Op- Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 tional[[][]str[][]] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 con-cerns: Op- Overfull \hbox (379.54115pt too wide) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 tional[Union[emod_api.dtk_tools.demographics.DemographicsGenera torConcern.DemographicsGeneratorConcern, Overfull \hbox (351.49101pt too wide) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 List[emod_api.dtk_tools.demographics.DemographicsGeneratorConce rn.DemographicsGeneratorConcern]]] Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Overfull \hbox (6.4637pt too wide) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 res_in_arcsec=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 custom\TS1/ptm/ m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (30.83415pt too wide) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 node_id_from_lat_long=True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 de-fault_population: Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 [][]\T1/ptm/m/it/10 int[][] = 1000\T1/ptm/m/n/10 , Overfull \hbox (79.21327pt too wide) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 load_other_columns_as_attributes=False\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 tional[List[[][]str[][]]] Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ex- Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 clude_columns: Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 Op-tional[List[[][]str[][]]] Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Overfull \hbox (0.89452pt too wide) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 nodeid_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 Op-tional[[][]str[][]] Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lat-i- Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 tude_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 lat\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lon-gi- Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 tude_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 tion_column_name: [16] Overfull \hbox (54.94496pt too wide) in paragraph at lines 1325--1326 []\T1/pcr/b/n/10 apply. If not specified, we use the DefaultWorldBankEquilibriu mConcern Underfull \hbox (badness 10000) in paragraph at lines 1373--1373 []\T1/ptm/m/it/10 population_input_file: Underfull \hbox (badness 10000) in paragraph at lines 1373--1373 [][]\T1/ptm/m/it/10 str[][]\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-mo-graph- Underfull \hbox (badness 7851) in paragraph at lines 1373--1373 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 con-cerns: Op- Overfull \hbox (349.54115pt too wide) in paragraph at lines 1373--1373 \T1/ptm/m/it/10 tional[Union[emod_api.dtk_tools.demographics.DemographicsGenera torConcern.DemographicsGeneratorConcern, Overfull \hbox (321.49101pt too wide) in paragraph at lines 1373--1373 \T1/ptm/m/it/10 List[emod_api.dtk_tools.demographics.DemographicsGeneratorConce rn.DemographicsGeneratorConcern]]] Underfull \hbox (badness 10000) in paragraph at lines 1373--1373 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1373--1373 \T1/ptm/m/it/10 res_in_arcsec=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 custom\TS1/ptm/ m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (0.83415pt too wide) in paragraph at lines 1373--1373 \T1/ptm/m/it/10 node_id_from_lat_long=True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1373--1373 \T1/ptm/m/it/10 de-fault_population: Underfull \hbox (badness 10000) in paragraph at lines 1373--1373 [][]\T1/ptm/m/it/10 int[][] = 1000\T1/ptm/m/n/10 , Overfull \hbox (49.21327pt too wide) in paragraph at lines 1373--1373 \T1/ptm/m/it/10 load_other_columns_as_attributes=False\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1373--1373 \T1/ptm/m/it/10 in-clude_columns: Op- Underfull \hbox (badness 10000) in paragraph at lines 1373--1373 \T1/ptm/m/it/10 tional[List[[][]str[][]]] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1373--1373 \T1/ptm/m/it/10 ex-clude_columns: Op- Underfull \hbox (badness 10000) in paragraph at lines 1373--1373 \T1/ptm/m/it/10 tional[List[[][]str[][]]] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1373--1373 \T1/ptm/m/it/10 nodeid_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1373--1373 \T1/ptm/m/it/10 Op-tional[[][]str[][]] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1373--1373 \T1/ptm/m/it/10 lat-i-tude_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1373--1373 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 lat\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lon-gi- Underfull \hbox (badness 10000) in paragraph at lines 1373--1373 \T1/ptm/m/it/10 tude_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1373--1373 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 lon\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pop-u-la- Underfull \hbox (badness 6236) in paragraph at lines 1373--1373 \T1/ptm/m/it/10 tion_column_name: [][]str[][] = [17] Overfull \hbox (54.94496pt too wide) in paragraph at lines 1388--1389 []\T1/pcr/b/n/10 apply. If not specified, we use the DefaultWorldBankEquilibriu mConcern Overfull \hbox (6.3048pt too wide) in paragraph at lines 1444--1444 []\T1/ptm/m/it/10 lat\T1/ptm/m/n/10 , Overfull \hbox (13.5249pt too wide) in paragraph at lines 1444--1444 \T1/ptm/m/it/10 long\T1/ptm/m/n/10 , Overfull \hbox (115.34473pt too wide) in paragraph at lines 1444--1444 \T1/ptm/m/it/10 res=0.008333333333333333\T1/pcr/m/n/10 ) Overfull \hbox (37.09444pt too wide) in paragraph at lines 1450--1450 []\T1/ptm/m/it/10 nodelist\T1/pcr/m/n/10 ) Overfull \hbox (11.74474pt too wide) in paragraph at lines 1456--1456 []\T1/ptm/m/it/10 node_info\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1456--1456 \T1/ptm/m/it/10 De- Underfull \hbox (badness 10000) in paragraph at lines 1456--1456 \T1/ptm/m/it/10 moDf\T1/ptm/m/n/10 , Overfull \hbox (91.34473pt too wide) in paragraph at lines 1456--1456 \T1/ptm/m/it/10 res=0.008333333333333333\T1/pcr/m/n/10 ) Overfull \hbox (71.74474pt too wide) in paragraph at lines 1462--1462 []\T1/ptm/m/it/10 node_info\T1/ptm/m/n/10 , Overfull \hbox (41.2549pt too wide) in paragraph at lines 1462--1462 \T1/ptm/m/it/10 ex- Overfull \hbox (118.90427pt too wide) in paragraph at lines 1462--1462 \T1/ptm/m/it/10 tra_data_columns=[]\T1/ptm/m/n/10 , Overfull \hbox (151.34473pt too wide) in paragraph at lines 1462--1462 \T1/ptm/m/it/10 res=0.008333333333333333\T1/pcr/m/n/10 ) [18] Underfull \hbox (badness 10000) in paragraph at lines 1502--1504 []\T1/ptm/m/n/10 json ob-ject aka python dict that can be di-rectly passed to D e-mo-graph- Underfull \hbox (badness 10000) in paragraph at lines 1515--1515 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1515--1515 \T1/ptm/m/it/10 mean=0.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1527--1529 []\T1/ptm/m/n/10 json ob-ject aka python dict that can be di-rectly passed to D e-mo-graph- Underfull \hbox (badness 10000) in paragraph at lines 1540--1540 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1546--1548 []\T1/ptm/m/n/10 json ob-ject aka python dict that can be di-rectly passed to D e-mo-graph- [19] Underfull \hbox (badness 10000) in paragraph at lines 1578--1578 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , \T1/ptm/m/it/10 low_prev\T1/ptm/m/n/10 , Underfull \hbox (badness 5091) in paragraph at lines 1578--1578 \T1/ptm/m/it/10 high_prev\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-scrip- Overfull \hbox (22.30493pt too wide) in paragraph at lines 1590--1590 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Overfull \hbox (7.6847pt too wide) in paragraph at lines 1590--1590 \T1/ptm/m/it/10 set- Overfull \hbox (34.0548pt too wide) in paragraph at lines 1590--1590 \T1/ptm/m/it/10 ting=1.0\T1/pcr/m/n/10 ) Overfull \hbox (10.30493pt too wide) in paragraph at lines 1596--1596 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1596--1596 \T1/ptm/m/it/10 pro- Overfull \hbox (58.54413pt too wide) in paragraph at lines 1596--1596 \T1/ptm/m/it/10 tected_setting=0.0\T1/ptm/m/n/10 , Overfull \hbox (9.20457pt too wide) in paragraph at lines 1596--1596 \T1/ptm/m/it/10 thresh- Overfull \hbox (53.51486pt too wide) in paragraph at lines 1596--1596 \T1/ptm/m/it/10 old_age=1825.0\T1/pcr/m/n/10 ) Overfull \hbox (46.30493pt too wide) in paragraph at lines 1602--1602 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Overfull \hbox (42.23488pt too wide) in paragraph at lines 1602--1602 \T1/ptm/m/it/10 mean- Overfull \hbox (44.91478pt too wide) in paragraph at lines 1602--1602 \T1/ptm/m/it/10 AgeAt- Overfull \hbox (28.90492pt too wide) in paragraph at lines 1602--1602 \T1/ptm/m/it/10 In- Overfull \hbox (32.23474pt too wide) in paragraph at lines 1602--1602 \T1/ptm/m/it/10 fec- Overfull \hbox (58.0548pt too wide) in paragraph at lines 1602--1602 \T1/ptm/m/it/10 tion=2.5\T1/pcr/m/n/10 ) Overfull \hbox (55.80493pt too wide) in paragraph at lines 1608--1608 []\T1/ptm/m/it/10 demog\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1614--1614 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1614--1614 \T1/ptm/m/it/10 age_bins\T1/ptm/m/n/10 , Overfull \hbox (25.80493pt too wide) in paragraph at lines 1636--1636 []\T1/ptm/m/it/10 demog\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1654--1655 []\T1/pcr/b/n/10 "15-19", etc. up to "45-49", and a column named "Years" with [20] LaTeX Warning: Hyper reference `emod_api.demographics.PropertiesAndAttributes:e mod_api.demographics.PropertiesAndAttributes.IndividualAttributes' on page 21 u ndefined on input line 1686. LaTeX Warning: Hyper reference `emod_api.demographics.PropertiesAndAttributes:e mod_api.demographics.PropertiesAndAttributes.IndividualProperties' on page 21 u ndefined on input line 1686. LaTeX Warning: Hyper reference `emod_api.demographics.PropertiesAndAttributes:e mod_api.demographics.PropertiesAndAttributes.NodeAttributes' on page 21 undefin ed on input line 1686. Overfull \hbox (64.51184pt too wide) in paragraph at lines 1686--1686 \T1/ptm/m/n/10 emod_api.demographics.PropertiesAndAttributes.IndividualAttribut es Underfull \hbox (badness 10000) in paragraph at lines 1686--1686 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in-di-vid-ual_properties : Overfull \hbox (65.26187pt too wide) in paragraph at lines 1686--1686 \T1/ptm/m/n/10 emod_api.demographics.PropertiesAndAttributes.IndividualProperti es Underfull \hbox (badness 10000) in paragraph at lines 1686--1686 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 node_attributes: Overfull \hbox (45.31218pt too wide) in paragraph at lines 1686--1686 \T1/ptm/m/n/10 emod_api.demographics.PropertiesAndAttributes.NodeAttributes LaTeX Warning: Hyper reference `emod_api.demographics.Updateable:emod_api.demog raphics.Updateable.Updateable' on page 21 undefined on input line 1687. LaTeX Warning: Hyper reference `emod_api.demographics.Node:emod_api.demographic s.Node.Node' on page 21 undefined on input line 1765. Overfull \hbox (22.9045pt too wide) in paragraph at lines 1780--1780 []\T1/ptm/m/it/10 nodeid\T1/ptm/m/n/10 , \T1/ptm/m/it/10 res_in_deg=0.041666666 666666664\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1786--1786 []\T1/ptm/m/it/10 lat\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lon\T1/ptm/m/n/10 , Overfull \hbox (9.16464pt too wide) in paragraph at lines 1786--1786 \T1/ptm/m/it/10 res_in_deg=0.041666666666666664\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1792--1792 []\T1/ptm/m/it/10 lat\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lon\T1/ptm/m/n/10 , [21] Overfull \hbox (59.95372pt too wide) in paragraph at lines 1816--1816 []\T1/ptm/m/it/10 initial_distribution: Overfull \hbox (21.8143pt too wide) in paragraph at lines 1816--1816 \T1/ptm/m/it/10 List[[][]float[][]] Underfull \hbox (badness 10000) in paragraph at lines 1816--1816 \T1/ptm/m/it/10 = Overfull \hbox (4.85487pt too wide) in paragraph at lines 1816--1816 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (3.0149pt too wide) in paragraph at lines 1816--1816 \T1/ptm/m/it/10 prop- Overfull \hbox (27.15454pt too wide) in paragraph at lines 1816--1816 \T1/ptm/m/it/10 erty=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1816--1816 \T1/ptm/m/it/10 val- Underfull \hbox (badness 10000) in paragraph at lines 1816--1816 \T1/ptm/m/it/10 ues: Overfull \hbox (21.8143pt too wide) in paragraph at lines 1816--1816 \T1/ptm/m/it/10 List[[][]float[][]] Underfull \hbox (badness 10000) in paragraph at lines 1816--1816 \T1/ptm/m/it/10 = Overfull \hbox (4.85487pt too wide) in paragraph at lines 1816--1816 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (1.09485pt too wide) in paragraph at lines 1816--1816 \T1/ptm/m/it/10 tran- Underfull \hbox (badness 10000) in paragraph at lines 1816--1816 \T1/ptm/m/it/10 si- Overfull \hbox (4.02464pt too wide) in paragraph at lines 1816--1816 \T1/ptm/m/it/10 tions: Overfull \hbox (21.8143pt too wide) in paragraph at lines 1816--1816 \T1/ptm/m/it/10 List[[][]float[][]] Underfull \hbox (badness 10000) in paragraph at lines 1816--1816 \T1/ptm/m/it/10 = Overfull \hbox (4.85487pt too wide) in paragraph at lines 1816--1816 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (4.98474pt too wide) in paragraph at lines 1816--1816 \T1/ptm/m/it/10 trans- Underfull \hbox (badness 10000) in paragraph at lines 1816--1816 \T1/ptm/m/it/10 mis- Overfull \hbox (32.35434pt too wide) in paragraph at lines 1816--1816 \T1/ptm/m/it/10 sion_matrix: Overfull \hbox (21.8143pt too wide) in paragraph at lines 1816--1816 \T1/ptm/m/it/10 List[[][]float[][]] Underfull \hbox (badness 10000) in paragraph at lines 1816--1816 \T1/ptm/m/it/10 = Overfull \hbox (8.35487pt too wide) in paragraph at lines 1816--1816 \T1/ptm/m/it/10 None\T1/pcr/m/n/10 ) LaTeX Warning: Hyper reference `emod_api.demographics.Updateable:emod_api.demog raphics.Updateable.Updateable' on page 22 undefined on input line 1817. LaTeX Warning: Hyper reference `emod_api.demographics.PropertiesAndAttributes:e mod_api.demographics.PropertiesAndAttributes.IndividualProperty' on page 22 und efined on input line 1830. Overfull \hbox (76.12407pt too wide) in paragraph at lines 1830--1830 []\T1/ptm/m/it/10 individual_property: Overfull \hbox (269.15215pt too wide) in paragraph at lines 1830--1830 \T1/ptm/m/n/10 emod_api.demographics.PropertiesAndAttributes.IndividualProperty Underfull \hbox (badness 10000) in paragraph at lines 1830--1830 \T1/ptm/m/it/10 = Overfull \hbox (20.35487pt too wide) in paragraph at lines 1830--1830 \T1/ptm/m/it/10 None\T1/pcr/m/n/10 ) LaTeX Warning: Hyper reference `emod_api.demographics.Updateable:emod_api.demog raphics.Updateable.Updateable' on page 22 undefined on input line 1831. 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[22] Underfull \hbox (badness 10000) in paragraph at lines 1866--1866 []\T1/ptm/m/it/10 distribution_values: List[[][]float[][]] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- LaTeX Warning: Hyper reference `emod_api.demographics.Updateable:emod_api.demog raphics.Updateable.Updateable' on page 23 undefined on input line 1867. Underfull \hbox (badness 10000) in paragraph at lines 1880--1880 []\T1/ptm/m/it/10 distribution_values=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-s ult_scale_factor=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- LaTeX Warning: Hyper reference `emod_api.demographics.Updateable:emod_api.demog raphics.Updateable.Updateable' on page 23 undefined on input line 1881. 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[23] Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 []\T1/ptm/m/it/10 airport: Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 [][]\T1/ptm/m/it/10 int[][] = Overfull \hbox (4.8247pt too wide) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 tude=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Overfull \hbox (0.98447pt too wide) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 birth_rate: Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 [][]\T1/ptm/m/it/10 float[][] = Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 coun- Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 try=None\T1/ptm/m/n/10 , Overfull \hbox (9.42453pt too wide) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 growth_rate: Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 [][]\T1/ptm/m/it/10 float[][] = Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 lat-i-tude: Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 [][]\T1/ptm/m/it/10 float[][] = Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 lon-gi-tude: Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 [][]\T1/ptm/m/it/10 float[][] = Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 meta-data: Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 [][]\T1/ptm/m/it/10 dict[][] = Overfull \hbox (22.25432pt too wide) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 tial_population: Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 [][]\T1/ptm/m/it/10 int[][] = Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 sea-port: Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 [][]\T1/ptm/m/it/10 int[][] = Overfull \hbox (50.58374pt too wide) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 val_habitat_multiplier: Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 List[[][]float[][]] Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 ini- Overfull \hbox (86.9334pt too wide) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 tial_vectors_per_species=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 in-fec-tiv- Overfull \hbox (15.02396pt too wide) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 ity_multiplier: Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 [][]\T1/ptm/m/it/10 float[][] = Overfull \hbox (15.23419pt too wide) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 tra_attributes: Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 [][]\T1/ptm/m/it/10 dict[][] = LaTeX Warning: Hyper reference `emod_api.demographics.Updateable:emod_api.demog raphics.Updateable.Updateable' on page 24 undefined on input line 1936. [24] [25] Underfull \hbox (badness 10000) in paragraph at lines 2006--2007 []\T1/pcr/b/n/10 distribution \T1/ptm/m/n/10 ^^U The se-lected dis-tri-bu-tion (need to come from Underfull \hbox (badness 10000) in paragraph at lines 2026--2026 []\T1/ptm/m/it/10 filename\T1/ptm/m/n/10 , \T1/ptm/m/it/10 dis-tri-bu-tion\T1/p tm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2027--2028 \T1/ptm/m/n/10 Set the \T1/pcr/m/n/10 ImmunityDistributionFlag\T1/ptm/m/n/10 , \T1/pcr/m/n/10 ImmunityDistribution1 \T1/ptm/m/n/10 and Underfull \hbox (badness 10000) in paragraph at lines 2054--2054 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2054--2054 \T1/ptm/m/it/10 fn\T1/ptm/m/n/10 , [26] Underfull \hbox (badness 10000) in paragraph at lines 2124--2124 []\T1/ptm/m/it/10 cb\T1/ptm/m/n/10 , Overfull \hbox (28.70406pt too wide) in paragraph at lines 2124--2124 \T1/ptm/m/it/10 use_existing=False\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 2150--2150 []\T1/ptm/m/it/10 cb\T1/ptm/m/n/10 , Overfull \hbox (34.70406pt too wide) in paragraph at lines 2150--2150 \T1/ptm/m/it/10 use_existing=False\T1/pcr/m/n/10 ) LaTeX Warning: Hyper reference `emod_api.demographics.demographics_utils:emod_a pi.demographics.demographics_utils.set_static_demographics' on page 27 undefine d on input line 2151. [27] Underfull \hbox (badness 10000) in paragraph at lines 2222--2222 []\T1/ptm/m/it/10 point\T1/ptm/m/n/10 , Overfull \hbox (37.41425pt too wide) in paragraph at lines 2222--2222 \T1/ptm/m/it/10 grid_id_2_cell_id\T1/ptm/m/n/10 , LaTeX Warning: Hyper reference `emod_api.schema_to_class:emod_api.schema_to_cla ss.ReadOnlyDict' on page 28 undefined on input line 2254. Underfull \hbox (badness 10000) in paragraph at lines 2263--2263 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Event_Trigger\T1/ptm/m/n /10 , Overfull \hbox (73.22345pt too wide) in paragraph at lines 2263--2263 \T1/ptm/m/it/10 Node_Selection_Type=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 DISTANCE_ ONLY\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (57.50374pt too wide) in paragraph at lines 2263--2263 \T1/ptm/m/it/10 Max_Distance_To_Other_Nodes_Km=- [28] LaTeX Warning: Hyper reference `emod_api.schema_to_class:emod_api.schema_to_cla ss.ReadOnlyDict' on page 29 undefined on input line 2289. 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Type H for immediate help. ... l.2763 ...{CONST(ANT)}] \leavevmode\begin{itemize} [34] Underfull \hbox (badness 10000) in paragraph at lines 2825--2825 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day=1\T1/ptm/m/n/1 0 , Underfull \hbox (badness 10000) in paragraph at lines 2825--2825 \T1/ptm/m/it/10 new_infectivity=1.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2825--2825 \T1/ptm/m/it/10 pro-file=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 CONST\TS1/ptm/m/it/1 0 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2825--2825 \T1/ptm/m/it/10 node_ids=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2825--2825 \T1/ptm/m/it/10 re-cur-ring=True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2833--2833 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2844--2844 \T1/ptm/m/it/10 age=0.01\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ig-nore_immunity=None\ T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2853--2853 []\T1/ptm/m/it/10 campaign_builder\T1/ptm/m/n/10 , \T1/ptm/m/it/10 timestep\T1/ ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2887--2887 \T1/ptm/m/it/10 ef-fi-cacy=1.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2887--2887 \T1/ptm/m/it/10 sv_name=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Vaccine\TS1/ptm/m/it/ 10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2887--2887 \T1/ptm/m/it/10 wan-ing_duration=100\T1/ptm/m/n/10 , [35] Underfull \hbox (badness 10000) in paragraph at lines 2908--2908 []\T1/ptm/m/it/10 timestep\T1/ptm/m/n/10 , \T1/ptm/m/it/10 file- Underfull \hbox (badness 10000) in paragraph at lines 2925--2925 []\T1/ptm/m/it/10 schema_path\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ini-tial=1.0\T1/p tm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2925--2925 \T1/ptm/m/it/10 box_duration=365\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de- [36] Underfull \hbox (badness 5548) in paragraph at lines 3032--3035 []\T1/ptm/m/n/10 EMOD/DTK for-mat mi-gra-tion files (and as-so-ci-ated meta-dat a files) can be writ-ten with mi-gra- [37] Underfull \hbox (badness 10000) in paragraph at lines 3298--3298 \T1/ptm/m/it/10 num_nodes=100\T1/ptm/m/n/10 , \T1/ptm/m/it/10 mig_factor=1.0\T1 /ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3298--3298 \T1/ptm/m/it/10 frac_rural=0.3\T1/ptm/m/n/10 , \T1/ptm/m/it/10 id_ref=\TS1/ptm/ m/it/10 '\T1/ptm/m/it/10 from_params\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm/ m/it/10 mi- [38] LaTeX Warning: Hyper reference `emod_api.migration.migration:emod_api.migration .migration.Migration' on page 39 undefined on input line 3309. 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LaTeX Warning: Hyper reference `emod_api.serialization.dtkFileTools:emod_api.se rialization.dtkFileTools.DtkFile' on page 44 undefined on input line 3876. LaTeX Warning: Hyper reference `emod_api.serialization.dtkFileTools:emod_api.se rialization.dtkFileTools.DtkFileV3' on page 44 undefined on input line 3898. [44] Underfull \hbox (badness 10000) in paragraph at lines 3957--3957 \T1/ptm/m/it/10 List[[][]int[][]] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 data: Underfull \hbox (badness 10000) in paragraph at lines 3957--3957 \T1/ptm/m/it/10 numpy.array = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start: [45] [46] [47] [48] [49] [50] Chapter 4. [51] [52] LaTeX Warning: Reference `emod_api:module-emod_api' on page 53 undefined on inp ut line 4490. LaTeX Warning: Reference `emod_api.campaign:module-emod_api.campaign' on page 5 3 undefined on input line 4491. LaTeX Warning: Reference `emod_api.channelreports:module-emod_api.channelreport s' on page 53 undefined on input line 4492. 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LaTeX Warning: Reference `emod_api.weather.weather:module-emod_api.weather.weat her' on page 53 undefined on input line 4541. [53] No file institute-for-disease-modeling-emod-api.ind. (./institute-for-disease-modeling-emod-api.aux) Package rerunfilecheck Warning: File `institute-for-disease-modeling-emod-api.o ut' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc}< /usr/share/texlive/texmf-dist/fonts/type1/urw/courier/ucrr8a.pfb>< /usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmri8a.pfb> Output written on institute-for-disease-modeling-emod-api.pdf (57 pages, 250969 bytes). Transcript written on institute-for-disease-modeling-emod-api.log. Latexmk: Index file 'institute-for-disease-modeling-emod-api.idx' was written Latexmk: Missing input file: 'institute-for-disease-modeling-emod-api.ind' from line 'No file institute-for-disease-modeling-emod-api.ind.' Latexmk: References changed. Latexmk: References changed. Latexmk: Log file says output to 'institute-for-disease-modeling-emod-api.pdf' Latexmk: Log file says output to 'institute-for-disease-modeling-emod-api.pdf' Latexmk: List of undefined refs and citations: Reference `emod_api.campaign:module-emod_api.campaign' on page 53 undefined on input line 4491 Reference `emod_api.channelreports.channels:module-emod_api.channelreports.channels' on page 53 undefined on input line 4493 Reference `emod_api.channelreports:module-emod_api.channelreports' on page 53 undefined on input line 4492 Reference `emod_api.config.default_from_schema:module-emod_api.config.default_from_schema' on page 53 undefined on input line 4495 Reference `emod_api.config.default_from_schema_no_validation:module-emod_api.config.default_from_schema_no_validation' on page 53 undefined on input line 4496 Reference `emod_api.config.dtk_post_process_adhocevents:module-emod_api.config.dtk_post_process_adhocevents' on page 53 undefined on input line 4497 Reference `emod_api.config.dtk_pre_process_adhocevents:module-emod_api.config.dtk_pre_process_adhocevents' on page 53 undefined on input line 4498 Reference `emod_api.config.dtk_pre_process_w5ml:module-emod_api.config.dtk_pre_process_w5ml' on page 53 undefined on input line 4499 Reference `emod_api.config.from_overrides:module-emod_api.config.from_overrides' on page 53 undefined on input line 4500 Reference `emod_api.config.from_poi_and_binary:module-emod_api.config.from_poi_and_binary' on page 53 undefined on input line 4501 Reference `emod_api.config.from_schema:module-emod_api.config.from_schema' on page 53 undefined on input line 4502 Reference `emod_api.config.schema_to_config:module-emod_api.config.schema_to_config' on page 53 undefined on input line 4503 Reference `emod_api.config:module-emod_api.config' on page 53 undefined on input line 4494 Reference `emod_api.demographics.BaseInputFile:module-emod_api.demographics.BaseInputFile' on page 53 undefined on input line 4505 Reference `emod_api.demographics.Demographics:module-emod_api.demographics.Demographics' on page 53 undefined on input line 4506 Reference `emod_api.demographics.DemographicsGenerator:module-emod_api.demographics.DemographicsGenerator' on page 53 undefined on input line 4508 Reference `emod_api.demographics.DemographicsInputDataParsers:module-emod_api.demographics.DemographicsInputDataParsers' on page 53 undefined on input line 4509 Reference `emod_api.demographics.DemographicsTemplates:module-emod_api.demographics.DemographicsTemplates' on page 53 undefined on input line 4510 Reference `emod_api.demographics.Node:module-emod_api.demographics.Node' on page 53 undefined on input line 4512 Reference `emod_api.demographics.PreDefinedDistributions:module-emod_api.demographics.PreDefinedDistributions' on page 53 undefined on input line 4513 Reference `emod_api.demographics.PropertiesAndAttributes:module-emod_api.demographics.PropertiesAndAttributes' on page 53 undefined on input line 4514 Reference `emod_api.demographics.Updateable:module-emod_api.demographics.Updateable' on page 53 undefined on input line 4515 Reference `emod_api.demographics.demographics_utils:module-emod_api.demographics.demographics_utils' on page 53 undefined on input line 4507 Reference `emod_api.demographics.grid_construction:module-emod_api.demographics.grid_construction' on page 53 undefined on input line 4511 Reference `emod_api.demographics:module-emod_api.demographics' on page 53 undefined on input line 4504 Reference `emod_api.interventions.common:module-emod_api.interventions.common' on page 53 undefined on input line 4517 Reference `emod_api.interventions.import_pressure:module-emod_api.interventions.import_pressure' on page 53 undefined on input line 4518 Reference `emod_api.interventions.node_multiplier:module-emod_api.interventions.node_multiplier' on page 53 undefined on input line 4519 Reference `emod_api.interventions.outbreak:module-emod_api.interventions.outbreak' on page 53 undefined on input line 4520 Reference `emod_api.interventions.simple_vaccine:module-emod_api.interventions.simple_vaccine' on page 53 undefined on input line 4521 Reference `emod_api.interventions.utils:module-emod_api.interventions.utils' on page 53 undefined on input line 4522 Reference `emod_api.interventions:module-emod_api.interventions' on page 53 undefined on input line 4516 Reference `emod_api.migration.client.client:module-emod_api.migration.client.client' on page 53 undefined on input line 4525 Reference `emod_api.migration.client:module-emod_api.migration.client' on page 53 undefined on input line 4524 Reference `emod_api.migration.migration:module-emod_api.migration.migration' on page 53 undefined on input line 4526 Reference `emod_api.migration:module-emod_api.migration' on page 53 undefined on input line 4523 Reference `emod_api.schema.dtk_post_process_schema:module-emod_api.schema.dtk_post_process_schema' on page 53 undefined on input line 4528 Reference `emod_api.schema.get_schema:module-emod_api.schema.get_schema' on page 53 undefined on input line 4529 Reference `emod_api.schema:module-emod_api.schema' on page 53 undefined on input line 4527 Reference `emod_api.schema_to_class:module-emod_api.schema_to_class' on page 53 undefined on input line 4530 Reference `emod_api.serialization.CensusAndModPop:module-emod_api.serialization.CensusAndModPop' on page 53 undefined on input line 4532 Reference `emod_api.serialization.SerializedPopulation:module-emod_api.serialization.SerializedPopulation' on page 53 undefined on input line 4536 Reference `emod_api.serialization.dtkFileSupport:module-emod_api.serialization.dtkFileSupport' on page 53 undefined on input line 4533 Reference `emod_api.serialization.dtkFileTools:module-emod_api.serialization.dtkFileTools' on page 53 undefined on input line 4534 Reference `emod_api.serialization.dtkFileUtility:module-emod_api.serialization.dtkFileUtility' on page 53 undefined on input line 4535 Reference `emod_api.serialization:module-emod_api.serialization' on page 53 undefined on input line 4531 Reference `emod_api.spatialreports.spatial:module-emod_api.spatialreports.spatial' on page 53 undefined on input line 4538 Reference `emod_api.spatialreports:module-emod_api.spatialreports' on page 53 undefined on input line 4537 Reference `emod_api.tabularoutput:module-emod_api.tabularoutput' on page 53 undefined on input line 4539 Reference `emod_api.weather.weather:module-emod_api.weather.weather' on page 53 undefined on input line 4541 Reference `emod_api.weather:module-emod_api.weather' on page 53 undefined on input line 4540 Reference `emod_api:module-emod_api' on page 53 undefined on input line 4490 Latexmk: Summary of warnings: Latex failed to resolve 52 reference(s) Rule 'makeindex institute-for-disease-modeling-emod-api.idx': File changes, etc: Non-existent destination files: 'institute-for-disease-modeling-emod-api.ind' ------------ Run number 1 of rule 'makeindex institute-for-disease-modeling-emod-api.idx' ------------ ------------ Running 'makeindex -s python.ist -o "institute-for-disease-modeling-emod-api.ind" "institute-for-disease-modeling-emod-api.idx"' ------------ Latexmk: applying rule 'makeindex institute-for-disease-modeling-emod-api.idx'... This is makeindex, version 2.15 [TeX Live 2017] (kpathsea + Thai support). Scanning style file ./python.ist.......done (7 attributes redefined, 0 ignored). Scanning input file institute-for-disease-modeling-emod-api.idx....done (472 entries accepted, 0 rejected). Sorting entries......done (4453 comparisons). Generating output file institute-for-disease-modeling-emod-api.ind....done (901 lines written, 0 warnings). Output written in institute-for-disease-modeling-emod-api.ind. Transcript written in institute-for-disease-modeling-emod-api.ilg. Rule 'pdflatex': File changes, etc: Changed files, or newly in use since previous run(s): 'institute-for-disease-modeling-emod-api.aux' 'institute-for-disease-modeling-emod-api.ind' ------------ Run number 2 of rule 'pdflatex' ------------ Latexmk: applying rule 'pdflatex'... ------------ Running 'pdflatex -interaction=nonstopmode -recorder --jobname="institute-for-disease-modeling-emod-api" "emod-api-docs.tex"' ------------ This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./emod-api-docs.tex LaTeX2e <2017-04-15> Babel <3.18> and hyphenation patterns for 84 language(s) loaded. 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(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) (./institute-for-disease-modeling-emod-api.out) (./institute-for-disease-modeling-emod-api.out) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd)<><><><> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}] [2] (./institute-for-disease-modeling-emod-api.toc) [1] [2] [1] [2] Chapter 1. (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) [3] [4] Chapter 2. Underfull \hbox (badness 10000) in paragraph at lines 227--231 []\T1/ptm/m/n/10 Sure. [5] [6] Chapter 3. Underfull \hbox (badness 10000) in paragraph at lines 240--242 []\T1/ptm/m/n/10 python -m Underfull \hbox (badness 10000) in paragraph at lines 243--245 []\T1/ptm/m/n/10 python -m [7] Underfull \hbox (badness 10000) in paragraph at lines 369--369 []\T1/ptm/m/it/10 filename: [][]str[][] = None\T1/ptm/m/n/10 , [8] Overfull \hbox (73.14464pt too wide) in paragraph at lines 487--487 []\T1/ptm/m/it/10 schema_path_in\T1/ptm/m/n/10 , Overfull \hbox (27.46486pt too wide) in paragraph at lines 487--487 \T1/ptm/m/it/10 subn- Overfull \hbox (43.09444pt too wide) in paragraph at lines 487--487 \T1/ptm/m/it/10 ode_list\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 490--492 []\T1/ptm/m/n/10 config = json.load(open(^^Pdefault_config.json^^Q), ob-ject_ho ok=s2c.ReadOnlyDict) os.remove( ^^Pde- Overfull \hbox (109.14464pt too wide) in paragraph at lines 498--498 []\T1/ptm/m/it/10 path_to_schema\T1/ptm/m/n/10 , Overfull \hbox (123.11464pt too wide) in paragraph at lines 498--498 \T1/ptm/m/it/10 schema_node=True\T1/ptm/m/n/10 , Overfull \hbox (102.79454pt too wide) in paragraph at lines 498--498 \T1/ptm/m/it/10 as_rod=False\T1/pcr/m/n/10 ) Overfull \hbox (79.14464pt too wide) in paragraph at lines 506--506 []\T1/ptm/m/it/10 path_to_schema\T1/ptm/m/n/10 , Overfull \hbox (27.35486pt too wide) in paragraph at lines 506--506 \T1/ptm/m/it/10 out- Overfull \hbox (152.67387pt too wide) in paragraph at lines 506--506 \T1/ptm/m/it/10 put_filename=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 default_config.j son\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (96.61464pt too wide) in paragraph at lines 506--506 \T1/ptm/m/it/10 schema_node=True\T1/pcr/m/n/10 ) Overfull \hbox (47.68495pt too wide) in paragraph at lines 516--516 []\T1/ptm/m/it/10 config\T1/pcr/m/n/10 ) Overfull \hbox (114.96484pt too wide) in paragraph at lines 530--530 []\T1/ptm/m/it/10 config_path\T1/ptm/m/n/10 , Overfull \hbox (95.13463pt too wide) in paragraph at lines 530--530 \T1/ptm/m/it/10 set_fn\T1/pcr/m/n/10 ) Overfull \hbox (126.96484pt too wide) in paragraph at lines 556--556 []\T1/ptm/m/it/10 config_path\T1/ptm/m/n/10 , Overfull \hbox (103.63463pt too wide) in paragraph at lines 556--556 \T1/ptm/m/it/10 set_fn\T1/ptm/m/n/10 , Overfull \hbox (95.01491pt too wide) in paragraph at lines 556--556 \T1/ptm/m/it/10 con- Overfull \hbox (133.8048pt too wide) in paragraph at lines 556--556 \T1/ptm/m/it/10 fig_out_path\T1/pcr/m/n/10 ) [9] Overfull \hbox (7.52466pt too wide) in paragraph at lines 594--594 \T1/ptm/m/it/10 hoc_events\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 624--624 []\T1/ptm/m/it/10 configjson_path\T1/ptm/m/n/10 , Overfull \hbox (63.52425pt too wide) in paragraph at lines 653--653 []\T1/ptm/m/it/10 start_config_dict\T1/ptm/m/n/10 , Overfull \hbox (71.87448pt too wide) in paragraph at lines 653--653 \T1/ptm/m/it/10 poi_set_param_fn\T1/pcr/m/n/10 ) Overfull \hbox (66.30441pt too wide) in paragraph at lines 662--662 []\T1/ptm/m/it/10 start_config_path\T1/ptm/m/n/10 , Overfull \hbox (71.87448pt too wide) in paragraph at lines 662--662 \T1/ptm/m/it/10 poi_set_param_fn\T1/pcr/m/n/10 ) Overfull \hbox (18.36475pt too wide) in paragraph at lines 671--671 []\T1/ptm/m/it/10 schema_path\T1/ptm/m/n/10 , Overfull \hbox (41.87448pt too wide) in paragraph at lines 671--671 \T1/ptm/m/it/10 poi_set_param_fn\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 680--680 []\T1/ptm/m/it/10 eradication_path\T1/ptm/m/n/10 , [10] Underfull \hbox (badness 10000) in paragraph at lines 728--730 []\T1/ptm/m/n/10 builder = s2c.SchemaConfigBuilder( Underfull \hbox (badness 10000) in paragraph at lines 737--737 []\T1/ptm/m/it/10 schema_name=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 schema.json\TS1 /ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 737--737 \T1/ptm/m/it/10 model=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 GENERIC_SIM\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 737--737 \T1/ptm/m/it/10 con-fig_out=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 config.json\TS1/p tm/m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (28.28418pt too wide) in paragraph at lines 748--748 []\T1/ptm/m/it/10 schema_name=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 schema.json\TS1 /ptm/m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (11.09424pt too wide) in paragraph at lines 748--748 \T1/ptm/m/it/10 model=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 GENERIC_SIM\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 748--748 \T1/ptm/m/it/10 con- Underfull \hbox (badness 10000) in paragraph at lines 748--748 \T1/ptm/m/it/10 fig_out=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 config.json\TS1/ptm/m /it/10 '\T1/ptm/m/n/10 , [11] Underfull \hbox (badness 10000) in paragraph at lines 791--791 \T1/ptm/m/it/10 name=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Erewhon\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 815--815 []\T1/ptm/m/it/10 tot_pop\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 815--815 \T1/ptm/m/it/10 num_nodes\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 824--824 []\T1/ptm/m/it/10 tot_pop=1000000\T1/ptm/m/n/10 , \T1/ptm/m/it/10 num_nodes=100 \T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 833--833 []\T1/ptm/m/it/10 input_file\T1/ptm/m/n/10 , \T1/ptm/m/it/10 res=0.008333333333 333333\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 841--841 []\T1/ptm/m/it/10 pop_filename_in\T1/ptm/m/n/10 , Overfull \hbox (28.44351pt too wide) in paragraph at lines 841--841 \T1/ptm/m/it/10 pop_filename_out=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 spatial_grid ded_pop_dir\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 847--847 []\T1/ptm/m/it/10 nodes\T1/ptm/m/n/10 , \T1/ptm/m/it/10 idref=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Gridded Underfull \hbox (badness 10000) in paragraph at lines 847--847 \T1/ptm/m/it/10 world grump2.5arcmin\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , [12] Overfull \hbox (149.53976pt too wide) in paragraph at lines 968--968 []\T1/ptm/m/it/10 distribution: [][]\T1/ptm/m/n/10 emod_api.demographics.Proper tiesAndAttributes.IndividualAttributes.MortalityDistribution[][] Overfull \hbox (98.42032pt too wide) in paragraph at lines 982--982 []\T1/ptm/m/it/10 distribution: [][]\T1/ptm/m/n/10 emod_api.demographics.Proper tiesAndAttributes.IndividualAttributes.AgeDistribution[][]\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1044--1044 []\T1/ptm/m/it/10 CrudeBirthRate=0.04\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Crude-Mor - [13] Underfull \hbox (badness 10000) in paragraph at lines 1133--1133 []\T1/ptm/m/it/10 file_male\T1/ptm/m/n/10 , \T1/ptm/m/it/10 file_female\T1/ptm/ m/n/10 , \T1/ptm/m/it/10 in-ter-val_fit=[1970, 1980]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1145--1145 []\T1/ptm/m/it/10 nodes=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1145--1145 \T1/ptm/m/it/10 meta_data: [][]dict[][] Overfull \hbox (7.52411pt too wide) in paragraph at lines 1145--1145 \T1/ptm/m/it/10 ual_attributes=None\T1/ptm/m/n/10 , Overfull \hbox (14.18416pt too wide) in paragraph at lines 1145--1145 \T1/ptm/m/it/10 node_attributes=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1145--1145 \T1/ptm/m/it/10 mor-tal- Overfull \hbox (16.5839pt too wide) in paragraph at lines 1145--1145 \T1/ptm/m/it/10 ity_distribution=None\T1/pcr/m/n/10 ) [14] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pcr.fd) Overfull \hbox (18.60422pt too wide) in paragraph at lines 1206--1206 []\T1/ptm/m/it/10 res_in_arcsec\T1/pcr/m/n/10 ) Overfull \hbox (13.07484pt too wide) in paragraph at lines 1225--1225 []\T1/ptm/m/it/10 nodes\T1/ptm/m/n/10 , Overfull \hbox (5.01491pt too wide) in paragraph at lines 1225--1225 \T1/ptm/m/it/10 con- Overfull \hbox (12.23463pt too wide) in paragraph at lines 1225--1225 \T1/ptm/m/it/10 cerns: Overfull \hbox (2.79494pt too wide) in paragraph at lines 1225--1225 \T1/ptm/m/it/10 Op- Overfull \hbox (457.54115pt too wide) in paragraph at lines 1225--1225 \T1/ptm/m/it/10 tional[Union[emod_api.dtk_tools.demographics.DemographicsGenera torConcern.DemographicsGeneratorConcern, Overfull \hbox (429.49101pt too wide) in paragraph at lines 1225--1225 \T1/ptm/m/it/10 List[emod_api.dtk_tools.demographics.DemographicsGeneratorConce rn.DemographicsGeneratorConcern]]] Underfull \hbox (badness 10000) in paragraph at lines 1225--1225 \T1/ptm/m/it/10 = Overfull \hbox (10.85487pt too wide) in paragraph at lines 1225--1225 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (84.4637pt too wide) in paragraph at lines 1225--1225 \T1/ptm/m/it/10 res_in_arcsec=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 custom\TS1/ptm/ m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (115.46402pt too wide) in paragraph at lines 1225--1225 \T1/ptm/m/it/10 node_id_from_lat_long=False\T1/pcr/m/n/10 ) [15] Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 []\T1/ptm/m/it/10 df\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-mo-graph- Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 ics_filename: Op- Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 tional[[][]str[][]] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 con-cerns: Op- Overfull \hbox (379.54115pt too wide) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 tional[Union[emod_api.dtk_tools.demographics.DemographicsGenera torConcern.DemographicsGeneratorConcern, Overfull \hbox (351.49101pt too wide) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 List[emod_api.dtk_tools.demographics.DemographicsGeneratorConce rn.DemographicsGeneratorConcern]]] Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Overfull \hbox (6.4637pt too wide) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 res_in_arcsec=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 custom\TS1/ptm/ m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (30.83415pt too wide) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 node_id_from_lat_long=True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 de-fault_population: Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 [][]\T1/ptm/m/it/10 int[][] = 1000\T1/ptm/m/n/10 , Overfull \hbox (79.21327pt too wide) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 load_other_columns_as_attributes=False\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 tional[List[[][]str[][]]] Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ex- Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 clude_columns: Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 Op-tional[List[[][]str[][]]] Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Overfull \hbox (0.89452pt too wide) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 nodeid_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 Op-tional[[][]str[][]] Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lat-i- Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 tude_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 lat\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lon-gi- Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 tude_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 tion_column_name: [16] Overfull \hbox (54.94496pt too wide) in paragraph at lines 1325--1326 []\T1/pcr/b/n/10 apply. If not specified, we use the DefaultWorldBankEquilibriu mConcern Underfull \hbox (badness 10000) in paragraph at lines 1373--1373 []\T1/ptm/m/it/10 population_input_file: Underfull \hbox (badness 10000) in paragraph at lines 1373--1373 [][]\T1/ptm/m/it/10 str[][]\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-mo-graph- Underfull \hbox (badness 7851) in paragraph at lines 1373--1373 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 con-cerns: Op- Overfull \hbox (349.54115pt too wide) in paragraph at lines 1373--1373 \T1/ptm/m/it/10 tional[Union[emod_api.dtk_tools.demographics.DemographicsGenera torConcern.DemographicsGeneratorConcern, Overfull \hbox (321.49101pt too wide) in paragraph at lines 1373--1373 \T1/ptm/m/it/10 List[emod_api.dtk_tools.demographics.DemographicsGeneratorConce rn.DemographicsGeneratorConcern]]] Underfull \hbox (badness 10000) in paragraph at lines 1373--1373 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1373--1373 \T1/ptm/m/it/10 res_in_arcsec=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 custom\TS1/ptm/ m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (0.83415pt too wide) in paragraph at lines 1373--1373 \T1/ptm/m/it/10 node_id_from_lat_long=True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1373--1373 \T1/ptm/m/it/10 de-fault_population: Underfull \hbox (badness 10000) in paragraph at lines 1373--1373 [][]\T1/ptm/m/it/10 int[][] = 1000\T1/ptm/m/n/10 , Overfull \hbox (49.21327pt too wide) in paragraph at lines 1373--1373 \T1/ptm/m/it/10 load_other_columns_as_attributes=False\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1373--1373 \T1/ptm/m/it/10 in-clude_columns: Op- Underfull \hbox (badness 10000) in paragraph at lines 1373--1373 \T1/ptm/m/it/10 tional[List[[][]str[][]]] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1373--1373 \T1/ptm/m/it/10 ex-clude_columns: Op- Underfull \hbox (badness 10000) in paragraph at lines 1373--1373 \T1/ptm/m/it/10 tional[List[[][]str[][]]] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1373--1373 \T1/ptm/m/it/10 nodeid_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1373--1373 \T1/ptm/m/it/10 Op-tional[[][]str[][]] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1373--1373 \T1/ptm/m/it/10 lat-i-tude_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1373--1373 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 lat\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lon-gi- Underfull \hbox (badness 10000) in paragraph at lines 1373--1373 \T1/ptm/m/it/10 tude_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1373--1373 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 lon\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pop-u-la- Underfull \hbox (badness 6236) in paragraph at lines 1373--1373 \T1/ptm/m/it/10 tion_column_name: [][]str[][] = [17] Overfull \hbox (54.94496pt too wide) in paragraph at lines 1388--1389 []\T1/pcr/b/n/10 apply. If not specified, we use the DefaultWorldBankEquilibriu mConcern Overfull \hbox (6.3048pt too wide) in paragraph at lines 1444--1444 []\T1/ptm/m/it/10 lat\T1/ptm/m/n/10 , Overfull \hbox (13.5249pt too wide) in paragraph at lines 1444--1444 \T1/ptm/m/it/10 long\T1/ptm/m/n/10 , Overfull \hbox (115.34473pt too wide) in paragraph at lines 1444--1444 \T1/ptm/m/it/10 res=0.008333333333333333\T1/pcr/m/n/10 ) Overfull \hbox (37.09444pt too wide) in paragraph at lines 1450--1450 []\T1/ptm/m/it/10 nodelist\T1/pcr/m/n/10 ) Overfull \hbox (11.74474pt too wide) in paragraph at lines 1456--1456 []\T1/ptm/m/it/10 node_info\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1456--1456 \T1/ptm/m/it/10 De- Underfull \hbox (badness 10000) in paragraph at lines 1456--1456 \T1/ptm/m/it/10 moDf\T1/ptm/m/n/10 , Overfull \hbox (91.34473pt too wide) in paragraph at lines 1456--1456 \T1/ptm/m/it/10 res=0.008333333333333333\T1/pcr/m/n/10 ) Overfull \hbox (71.74474pt too wide) in paragraph at lines 1462--1462 []\T1/ptm/m/it/10 node_info\T1/ptm/m/n/10 , Overfull \hbox (41.2549pt too wide) in paragraph at lines 1462--1462 \T1/ptm/m/it/10 ex- Overfull \hbox (118.90427pt too wide) in paragraph at lines 1462--1462 \T1/ptm/m/it/10 tra_data_columns=[]\T1/ptm/m/n/10 , Overfull \hbox (151.34473pt too wide) in paragraph at lines 1462--1462 \T1/ptm/m/it/10 res=0.008333333333333333\T1/pcr/m/n/10 ) [18] Underfull \hbox (badness 10000) in paragraph at lines 1502--1504 []\T1/ptm/m/n/10 json ob-ject aka python dict that can be di-rectly passed to D e-mo-graph- Underfull \hbox (badness 10000) in paragraph at lines 1515--1515 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1515--1515 \T1/ptm/m/it/10 mean=0.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1527--1529 []\T1/ptm/m/n/10 json ob-ject aka python dict that can be di-rectly passed to D e-mo-graph- Underfull \hbox (badness 10000) in paragraph at lines 1540--1540 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1546--1548 []\T1/ptm/m/n/10 json ob-ject aka python dict that can be di-rectly passed to D e-mo-graph- [19] Underfull \hbox (badness 10000) in paragraph at lines 1578--1578 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , \T1/ptm/m/it/10 low_prev\T1/ptm/m/n/10 , Underfull \hbox (badness 5091) in paragraph at lines 1578--1578 \T1/ptm/m/it/10 high_prev\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-scrip- Overfull \hbox (22.30493pt too wide) in paragraph at lines 1590--1590 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Overfull \hbox (7.6847pt too wide) in paragraph at lines 1590--1590 \T1/ptm/m/it/10 set- Overfull \hbox (34.0548pt too wide) in paragraph at lines 1590--1590 \T1/ptm/m/it/10 ting=1.0\T1/pcr/m/n/10 ) Overfull \hbox (10.30493pt too wide) in paragraph at lines 1596--1596 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1596--1596 \T1/ptm/m/it/10 pro- Overfull \hbox (58.54413pt too wide) in paragraph at lines 1596--1596 \T1/ptm/m/it/10 tected_setting=0.0\T1/ptm/m/n/10 , Overfull \hbox (9.20457pt too wide) in paragraph at lines 1596--1596 \T1/ptm/m/it/10 thresh- Overfull \hbox (53.51486pt too wide) in paragraph at lines 1596--1596 \T1/ptm/m/it/10 old_age=1825.0\T1/pcr/m/n/10 ) Overfull \hbox (46.30493pt too wide) in paragraph at lines 1602--1602 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Overfull \hbox (42.23488pt too wide) in paragraph at lines 1602--1602 \T1/ptm/m/it/10 mean- Overfull \hbox (44.91478pt too wide) in paragraph at lines 1602--1602 \T1/ptm/m/it/10 AgeAt- Overfull \hbox (28.90492pt too wide) in paragraph at lines 1602--1602 \T1/ptm/m/it/10 In- Overfull \hbox (32.23474pt too wide) in paragraph at lines 1602--1602 \T1/ptm/m/it/10 fec- Overfull \hbox (58.0548pt too wide) in paragraph at lines 1602--1602 \T1/ptm/m/it/10 tion=2.5\T1/pcr/m/n/10 ) Overfull \hbox (55.80493pt too wide) in paragraph at lines 1608--1608 []\T1/ptm/m/it/10 demog\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1614--1614 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1614--1614 \T1/ptm/m/it/10 age_bins\T1/ptm/m/n/10 , Overfull \hbox (25.80493pt too wide) in paragraph at lines 1636--1636 []\T1/ptm/m/it/10 demog\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1654--1655 []\T1/pcr/b/n/10 "15-19", etc. up to "45-49", and a column named "Years" with [20] Overfull \hbox (64.51184pt too wide) in paragraph at lines 1686--1686 [][]\T1/ptm/m/n/10 emod_api.demographics.PropertiesAndAttributes.IndividualAttr ibutes[][] Underfull \hbox (badness 10000) in paragraph at lines 1686--1686 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in-di-vid-ual_properties : Overfull \hbox (65.26187pt too wide) in paragraph at lines 1686--1686 [][]\T1/ptm/m/n/10 emod_api.demographics.PropertiesAndAttributes.IndividualProp erties[][] Underfull \hbox (badness 10000) in paragraph at lines 1686--1686 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 node_attributes: Overfull \hbox (45.31218pt too wide) in paragraph at lines 1686--1686 [][]\T1/ptm/m/n/10 emod_api.demographics.PropertiesAndAttributes.NodeAttributes [][] Overfull \hbox (22.9045pt too wide) in paragraph at lines 1780--1780 []\T1/ptm/m/it/10 nodeid\T1/ptm/m/n/10 , \T1/ptm/m/it/10 res_in_deg=0.041666666 666666664\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1786--1786 []\T1/ptm/m/it/10 lat\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lon\T1/ptm/m/n/10 , Overfull \hbox (9.16464pt too wide) in paragraph at lines 1786--1786 \T1/ptm/m/it/10 res_in_deg=0.041666666666666664\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1792--1792 []\T1/ptm/m/it/10 lat\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lon\T1/ptm/m/n/10 , [21] Overfull \hbox (59.95372pt too wide) in paragraph at lines 1816--1816 []\T1/ptm/m/it/10 initial_distribution: Overfull \hbox (21.8143pt too wide) in paragraph at lines 1816--1816 \T1/ptm/m/it/10 List[[][]float[][]] Underfull \hbox (badness 10000) in paragraph at lines 1816--1816 \T1/ptm/m/it/10 = Overfull \hbox (4.85487pt too wide) in paragraph at lines 1816--1816 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (3.0149pt too wide) in paragraph at lines 1816--1816 \T1/ptm/m/it/10 prop- Overfull \hbox (27.15454pt too wide) in paragraph at lines 1816--1816 \T1/ptm/m/it/10 erty=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1816--1816 \T1/ptm/m/it/10 val- Underfull \hbox (badness 10000) in paragraph at lines 1816--1816 \T1/ptm/m/it/10 ues: Overfull \hbox (21.8143pt too wide) in paragraph at lines 1816--1816 \T1/ptm/m/it/10 List[[][]float[][]] Underfull \hbox (badness 10000) in paragraph at lines 1816--1816 \T1/ptm/m/it/10 = Overfull \hbox (4.85487pt too wide) in paragraph at lines 1816--1816 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (1.09485pt too wide) in paragraph at lines 1816--1816 \T1/ptm/m/it/10 tran- Underfull \hbox (badness 10000) in paragraph at lines 1816--1816 \T1/ptm/m/it/10 si- Overfull \hbox (4.02464pt too wide) in paragraph at lines 1816--1816 \T1/ptm/m/it/10 tions: Overfull \hbox (21.8143pt too wide) in paragraph at lines 1816--1816 \T1/ptm/m/it/10 List[[][]float[][]] Underfull \hbox (badness 10000) in paragraph at lines 1816--1816 \T1/ptm/m/it/10 = Overfull \hbox (4.85487pt too wide) in paragraph at lines 1816--1816 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (4.98474pt too wide) in paragraph at lines 1816--1816 \T1/ptm/m/it/10 trans- Underfull \hbox (badness 10000) in paragraph at lines 1816--1816 \T1/ptm/m/it/10 mis- Overfull \hbox (32.35434pt too wide) in paragraph at lines 1816--1816 \T1/ptm/m/it/10 sion_matrix: Overfull \hbox (21.8143pt too wide) in paragraph at lines 1816--1816 \T1/ptm/m/it/10 List[[][]float[][]] Underfull \hbox (badness 10000) in paragraph at lines 1816--1816 \T1/ptm/m/it/10 = Overfull \hbox (8.35487pt too wide) in paragraph at lines 1816--1816 \T1/ptm/m/it/10 None\T1/pcr/m/n/10 ) Overfull \hbox (76.12407pt too wide) in paragraph at lines 1830--1830 []\T1/ptm/m/it/10 individual_property: Overfull \hbox (269.15215pt too wide) in paragraph at lines 1830--1830 [][]\T1/ptm/m/n/10 emod_api.demographics.PropertiesAndAttributes.IndividualProp erty[][] Underfull \hbox (badness 10000) in paragraph at lines 1830--1830 \T1/ptm/m/it/10 = Overfull \hbox (20.35487pt too wide) in paragraph at lines 1830--1830 \T1/ptm/m/it/10 None\T1/pcr/m/n/10 ) Overfull \hbox (109.22414pt too wide) in paragraph at lines 1861--1861 []\T1/ptm/m/it/10 age_distribution_flag=None\T1/ptm/m/n/10 , Overfull \hbox (94.32413pt too wide) in paragraph at lines 1861--1861 \T1/ptm/m/it/10 age_distribution1=None\T1/ptm/m/n/10 , Overfull \hbox (94.32413pt too wide) in paragraph at lines 1861--1861 \T1/ptm/m/it/10 age_distribution2=None\T1/ptm/m/n/10 , Overfull \hbox (89.32413pt too wide) in paragraph at lines 1861--1861 \T1/ptm/m/it/10 age_distribution=None\T1/ptm/m/n/10 , Overfull \hbox (18.82483pt too wide) in paragraph at lines 1861--1861 \T1/ptm/m/it/10 preva- Overfull \hbox (116.0839pt too wide) in paragraph at lines 1861--1861 \T1/ptm/m/it/10 lence_distribution_flag=None\T1/ptm/m/n/10 , Overfull \hbox (18.82483pt too wide) in paragraph at lines 1861--1861 \T1/ptm/m/it/10 preva- Overfull \hbox (101.18388pt too wide) in paragraph at lines 1861--1861 \T1/ptm/m/it/10 lence_distribution1=None\T1/ptm/m/n/10 , Overfull \hbox (18.82483pt too wide) in paragraph at lines 1861--1861 \T1/ptm/m/it/10 preva- Overfull \hbox (101.18388pt too wide) in paragraph at lines 1861--1861 \T1/ptm/m/it/10 lence_distribution2=None\T1/ptm/m/n/10 , Overfull \hbox (6.57483pt too wide) in paragraph at lines 1861--1861 \T1/ptm/m/it/10 im- Overfull \hbox (8.79494pt too wide) in paragraph at lines 1861--1861 \T1/ptm/m/it/10 mu- Overfull \hbox (109.9839pt too wide) in paragraph at lines 1861--1861 \T1/ptm/m/it/10 nity_distribution_flag=None\T1/ptm/m/n/10 , Overfull \hbox (6.57483pt too wide) in paragraph at lines 1861--1861 \T1/ptm/m/it/10 im- Overfull \hbox (8.79494pt too wide) in paragraph at lines 1861--1861 \T1/ptm/m/it/10 mu- Overfull \hbox (95.0839pt too wide) in paragraph at lines 1861--1861 \T1/ptm/m/it/10 nity_distribution1=None\T1/ptm/m/n/10 , Overfull \hbox (6.57483pt too wide) in paragraph at lines 1861--1861 \T1/ptm/m/it/10 im- Overfull \hbox (8.79494pt too wide) in paragraph at lines 1861--1861 \T1/ptm/m/it/10 mu- Overfull \hbox (95.0839pt too wide) in paragraph at lines 1861--1861 \T1/ptm/m/it/10 nity_distribution2=None\T1/ptm/m/n/10 , Overfull \hbox (109.9838pt too wide) in paragraph at lines 1861--1861 \T1/ptm/m/it/10 risk_distribution_flag=None\T1/ptm/m/n/10 , Overfull \hbox (95.08379pt too wide) in paragraph at lines 1861--1861 \T1/ptm/m/it/10 risk_distribution1=None\T1/ptm/m/n/10 , Overfull \hbox (95.08379pt too wide) in paragraph at lines 1861--1861 \T1/ptm/m/it/10 risk_distribution2=None\T1/ptm/m/n/10 , Overfull \hbox (6.57483pt too wide) in paragraph at lines 1861--1861 \T1/ptm/m/it/10 mi- Overfull \hbox (10.31496pt too wide) in paragraph at lines 1861--1861 \T1/ptm/m/it/10 gra- Overfull \hbox (169.32329pt too wide) in paragraph at lines 1861--1861 \T1/ptm/m/it/10 tion_heterogeneity_distribution_flag=None\T1/ptm/m/n/10 , Overfull \hbox (6.57483pt too wide) in paragraph at lines 1861--1861 \T1/ptm/m/it/10 mi- Overfull \hbox (10.31496pt too wide) in paragraph at lines 1861--1861 \T1/ptm/m/it/10 gra- Overfull \hbox (154.42328pt too wide) in paragraph at lines 1861--1861 \T1/ptm/m/it/10 tion_heterogeneity_distribution1=None\T1/ptm/m/n/10 , Overfull \hbox (6.57483pt too wide) in paragraph at lines 1861--1861 \T1/ptm/m/it/10 mi- Overfull \hbox (10.31496pt too wide) in paragraph at lines 1861--1861 \T1/ptm/m/it/10 gra- Overfull \hbox (154.42328pt too wide) in paragraph at lines 1861--1861 \T1/ptm/m/it/10 tion_heterogeneity_distribution2=None\T1/ptm/m/n/10 , Overfull \hbox (12.48488pt too wide) in paragraph at lines 1861--1861 \T1/ptm/m/it/10 mor- Overfull \hbox (7.13475pt too wide) in paragraph at lines 1861--1861 \T1/ptm/m/it/10 tal- Overfull \hbox (85.0839pt too wide) in paragraph at lines 1861--1861 \T1/ptm/m/it/10 ity_distribution=None\T1/ptm/m/n/10 , Overfull \hbox (9.35475pt too wide) in paragraph at lines 1861--1861 \T1/ptm/m/it/10 sus- Overfull \hbox (10.45485pt too wide) in paragraph at lines 1861--1861 \T1/ptm/m/it/10 cep- Overfull \hbox (2.13475pt too wide) in paragraph at lines 1861--1861 \T1/ptm/m/it/10 ti- Overfull \hbox (7.13475pt too wide) in paragraph at lines 1861--1861 \T1/ptm/m/it/10 bil- Overfull \hbox (88.5839pt too wide) in paragraph at lines 1861--1861 \T1/ptm/m/it/10 ity_distribution=None\T1/pcr/m/n/10 ) [22] Underfull \hbox (badness 10000) in paragraph at lines 1866--1866 []\T1/ptm/m/it/10 distribution_values: List[[][]float[][]] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 1880--1880 []\T1/ptm/m/it/10 distribution_values=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-s ult_scale_factor=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 1900--1900 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 axis_units=None\T1/ptm/m /n/10 , \T1/ptm/m/it/10 num_distribution_axes=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1900--1900 \T1/ptm/m/it/10 pop-u-la-tion_groups=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-su lt_scale_factor=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- [23] Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 []\T1/ptm/m/it/10 airport: Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 [][]\T1/ptm/m/it/10 int[][] = Overfull \hbox (4.8247pt too wide) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 tude=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Overfull \hbox (0.98447pt too wide) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 birth_rate: Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 [][]\T1/ptm/m/it/10 float[][] = Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 coun- Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 try=None\T1/ptm/m/n/10 , Overfull \hbox (9.42453pt too wide) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 growth_rate: Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 [][]\T1/ptm/m/it/10 float[][] = Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 lat-i-tude: Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 [][]\T1/ptm/m/it/10 float[][] = Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 lon-gi-tude: Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 [][]\T1/ptm/m/it/10 float[][] = Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 meta-data: Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 [][]\T1/ptm/m/it/10 dict[][] = Overfull \hbox (22.25432pt too wide) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 tial_population: Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 [][]\T1/ptm/m/it/10 int[][] = Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 sea-port: Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 [][]\T1/ptm/m/it/10 int[][] = Overfull \hbox (50.58374pt too wide) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 val_habitat_multiplier: Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 List[[][]float[][]] Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 ini- Overfull \hbox (86.9334pt too wide) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 tial_vectors_per_species=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 in-fec-tiv- Overfull \hbox (15.02396pt too wide) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 ity_multiplier: Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 [][]\T1/ptm/m/it/10 float[][] = Overfull \hbox (15.23419pt too wide) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 tra_attributes: Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 [][]\T1/ptm/m/it/10 dict[][] = [24] [25] Underfull \hbox (badness 10000) in paragraph at lines 2006--2007 []\T1/pcr/b/n/10 distribution \T1/ptm/m/n/10 ^^U The se-lected dis-tri-bu-tion (need to come from Underfull \hbox (badness 10000) in paragraph at lines 2026--2026 []\T1/ptm/m/it/10 filename\T1/ptm/m/n/10 , \T1/ptm/m/it/10 dis-tri-bu-tion\T1/p tm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2027--2028 \T1/ptm/m/n/10 Set the \T1/pcr/m/n/10 ImmunityDistributionFlag\T1/ptm/m/n/10 , \T1/pcr/m/n/10 ImmunityDistribution1 \T1/ptm/m/n/10 and Underfull \hbox (badness 10000) in paragraph at lines 2054--2054 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2054--2054 \T1/ptm/m/it/10 fn\T1/ptm/m/n/10 , [26] Underfull \hbox (badness 10000) in paragraph at lines 2124--2124 []\T1/ptm/m/it/10 cb\T1/ptm/m/n/10 , Overfull \hbox (28.70406pt too wide) in paragraph at lines 2124--2124 \T1/ptm/m/it/10 use_existing=False\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 2150--2150 []\T1/ptm/m/it/10 cb\T1/ptm/m/n/10 , Overfull \hbox (34.70406pt too wide) in paragraph at lines 2150--2150 \T1/ptm/m/it/10 use_existing=False\T1/pcr/m/n/10 ) [27] Underfull \hbox (badness 10000) in paragraph at lines 2222--2222 []\T1/ptm/m/it/10 point\T1/ptm/m/n/10 , Overfull \hbox (37.41425pt too wide) in paragraph at lines 2222--2222 \T1/ptm/m/it/10 grid_id_2_cell_id\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2263--2263 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Event_Trigger\T1/ptm/m/n /10 , Overfull \hbox (73.22345pt too wide) in paragraph at lines 2263--2263 \T1/ptm/m/it/10 Node_Selection_Type=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 DISTANCE_ ONLY\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (57.50374pt too wide) in paragraph at lines 2263--2263 \T1/ptm/m/it/10 Max_Distance_To_Other_Nodes_Km=- [28] Underfull \hbox (badness 10000) in paragraph at lines 2298--2298 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 In-ter-ven- Underfull \hbox (badness 10000) in paragraph at lines 2341--2342 []\T1/pcr/b/n/10 but without the distribution, which is inferred. E.g., Underfull \hbox (badness 10000) in paragraph at lines 2362--2362 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Event_Or_Config=\TS1/ptm /m/it/10 '\T1/ptm/m/it/10 Event\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/ 10 Con-fig=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2362--2362 \T1/ptm/m/it/10 Event=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 NoTrigger\TS1/ptm/m/it/ 10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Ten-dency=1.0\T1/ptm/m/n/10 , \T1/ptm/m/it /10 Sin-gle_Use=True\T1/ptm/m/n/10 , [29] Underfull \hbox (badness 10000) in paragraph at lines 2406--2406 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Trig-gers\T1/ptm/m/n/10 , \T1/ptm/m/it/10 In-ter-ven-tions\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Prop- Underfull \hbox (badness 10000) in paragraph at lines 2406--2406 \T1/ptm/m/it/10 erty_Restrictions=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 De-mo- Underfull \hbox (badness 10000) in paragraph at lines 2406--2406 \T1/ptm/m/it/10 graphic_Coverage=1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar-get_Ag e_Min=0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar- Underfull \hbox (badness 10000) in paragraph at lines 2406--2406 \T1/ptm/m/it/10 get_Age_Max=45625\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar-get_Gende r=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 All\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/p tm/m/it/10 Tar- Underfull \hbox (badness 10000) in paragraph at lines 2406--2406 \T1/ptm/m/it/10 get_Residents_Only=1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Duration=- 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Black- Underfull \hbox (badness 10000) in paragraph at lines 2406--2406 \T1/ptm/m/it/10 out_Event_Trigger=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Blackout_Ev ent_Trigger\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Black- Underfull \hbox (badness 10000) in paragraph at lines 2406--2406 \T1/ptm/m/it/10 out_Period=0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Black-out_On_First _Occurrence=0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2468--2468 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar-get_Property_Key\T1/ ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2468--2468 \T1/ptm/m/it/10 Tar-get_Property_Value\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2468--2468 \T1/ptm/m/it/10 New_Property_Value=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2468--2468 \T1/ptm/m/it/10 Daily_Probability=1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Max-i- Underfull \hbox (badness 10000) in paragraph at lines 2468--2468 \T1/ptm/m/it/10 In-ter-ven-tion_Name=\TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2468--2468 \T1/ptm/m/it/10 Event_Trigger_Distributed=\TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , [30] Underfull \hbox (badness 10000) in paragraph at lines 2488--2488 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Start_Day\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Node- Underfull \hbox (badness 10000) in paragraph at lines 2488--2488 \T1/ptm/m/it/10 set_Config=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Num- Underfull \hbox (badness 10000) in paragraph at lines 2488--2488 \T1/ptm/m/it/10 ber_Repetitions=1\T1/ptm/m/n/10 , Overfull \hbox (11.65335pt too wide) in paragraph at lines 2488--2488 \T1/ptm/m/it/10 Timesteps_Between_Repetitions=- Underfull \hbox (badness 10000) in paragraph at lines 2488--2488 \T1/ptm/m/it/10 1\T1/ptm/m/n/10 , Overfull \hbox (53.26375pt too wide) in paragraph at lines 2488--2488 \T1/ptm/m/it/10 Event_Name=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Scheduled_Campaign _Event\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2488--2488 \T1/ptm/m/it/10 Prop-erty_Restrictions=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2488--2488 \T1/ptm/m/it/10 De-mo-graphic_Coverage=1.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2488--2488 \T1/ptm/m/it/10 Tar-get_Age_Min=0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar- Underfull \hbox (badness 10000) in paragraph at lines 2488--2488 \T1/ptm/m/it/10 get_Age_Max=45625\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar- Underfull \hbox (badness 10000) in paragraph at lines 2488--2488 \T1/ptm/m/it/10 get_Gender=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 All\TS1/ptm/m/it/1 0 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 In-ter-ven- Underfull \hbox (badness 10000) in paragraph at lines 2548--2548 \T1/ptm/m/it/10 Trig-gers\T1/ptm/m/n/10 , \T1/ptm/m/it/10 In-ter-ven-tion_List\ T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2548--2548 \T1/ptm/m/it/10 Node-set_Config=None\T1/ptm/m/n/10 , Overfull \hbox (17.59343pt too wide) in paragraph at lines 2548--2548 \T1/ptm/m/it/10 Node_Property_Restrictions=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2548--2548 \T1/ptm/m/it/10 Prop-erty_Restrictions=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2548--2548 \T1/ptm/m/it/10 Num-ber_Repetitions=1\T1/ptm/m/n/10 , Overfull \hbox (11.65335pt too wide) in paragraph at lines 2548--2548 \T1/ptm/m/it/10 Timesteps_Between_Repetitions=- Underfull \hbox (badness 10000) in paragraph at lines 2548--2548 \T1/ptm/m/it/10 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 De-mo- Underfull \hbox (badness 10000) in paragraph at lines 2548--2548 \T1/ptm/m/it/10 graphic_Coverage=1.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2548--2548 \T1/ptm/m/it/10 Tar-get_Age_Min=0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar- Underfull \hbox (badness 10000) in paragraph at lines 2548--2548 \T1/ptm/m/it/10 get_Age_Max=45625\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2548--2548 \T1/ptm/m/it/10 Tar-get_Gender=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 All\TS1/ptm/m/ it/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar- Underfull \hbox (badness 10000) in paragraph at lines 2548--2548 \T1/ptm/m/it/10 get_Residents_Only=1\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2548--2548 \T1/ptm/m/it/10 Duration=- 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Black- Overfull \hbox (59.96321pt too wide) in paragraph at lines 2548--2548 \T1/ptm/m/it/10 out_Event_Trigger=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Blackout_Ev ent_Trigger\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2548--2548 \T1/ptm/m/it/10 Black-out_Period=0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Black- Underfull \hbox (badness 10000) in paragraph at lines 2548--2548 \T1/ptm/m/it/10 out_On_First_Occurrence=0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2548--2548 \T1/ptm/m/it/10 Dis-qual-i-fy- Underfull \hbox (badness 10000) in paragraph at lines 2548--2548 \T1/ptm/m/it/10 ing_Properties=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 De- [31] [32] Underfull \hbox (badness 10000) in paragraph at lines 2629--2629 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Base_Sensitivity=1\T1/pt m/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2629--2629 \T1/ptm/m/it/10 Base_Specificity=1\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2629--2629 \T1/ptm/m/it/10 Days_To_Diagnosis=0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2629--2629 \T1/ptm/m/it/10 Treat-ment_Fraction=1\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2658--2658 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2658--2658 \T1/ptm/m/it/10 trig-ger\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-lay\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2658--2658 \T1/ptm/m/it/10 in-ter-ven-tion\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2658--2658 \T1/ptm/m/it/10 ip_targeting=[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2672--2673 []\T1/pcr/b/n/10 without the distribution, which is inferred. E.g., { Underfull \hbox (badness 10000) in paragraph at lines 2695--2695 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2695--2695 \T1/ptm/m/it/10 new_ip_key\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2695--2695 \T1/ptm/m/it/10 new_ip_value\T1/ptm/m/n/10 , Overfull \hbox (25.72469pt too wide) in paragraph at lines 2695--2695 \T1/ptm/m/it/10 change_age_in_days\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2695--2695 \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 2695--2695 \T1/ptm/m/it/10 vert_in_days\T1/ptm/m/n/10 , Overfull \hbox (8.6443pt too wide) in paragraph at lines 2695--2695 \T1/ptm/m/it/10 ip_targeting_key\T1/ptm/m/n/10 , Overfull \hbox (17.38419pt too wide) in paragraph at lines 2695--2695 \T1/ptm/m/it/10 ip_targeting_value\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2695--2695 \T1/ptm/m/it/10 cov-er- [33] Underfull \hbox (badness 10000) in paragraph at lines 2754--2754 \T1/ptm/m/it/10 pro-file=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 CONST\TS1/ptm/m/it/1 0 '\T1/ptm/m/n/10 , ! LaTeX Error: Too deeply nested. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.2763 ...{CONST(ANT)}] \leavevmode\begin{itemize} [34] Underfull \hbox (badness 10000) in paragraph at lines 2825--2825 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day=1\T1/ptm/m/n/1 0 , Underfull \hbox (badness 10000) in paragraph at lines 2825--2825 \T1/ptm/m/it/10 new_infectivity=1.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2825--2825 \T1/ptm/m/it/10 pro-file=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 CONST\TS1/ptm/m/it/1 0 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2825--2825 \T1/ptm/m/it/10 node_ids=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2825--2825 \T1/ptm/m/it/10 re-cur-ring=True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2833--2833 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2844--2844 \T1/ptm/m/it/10 age=0.01\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ig-nore_immunity=None\ T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2853--2853 []\T1/ptm/m/it/10 campaign_builder\T1/ptm/m/n/10 , \T1/ptm/m/it/10 timestep\T1/ ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2887--2887 \T1/ptm/m/it/10 ef-fi-cacy=1.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2887--2887 \T1/ptm/m/it/10 sv_name=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Vaccine\TS1/ptm/m/it/ 10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2887--2887 \T1/ptm/m/it/10 wan-ing_duration=100\T1/ptm/m/n/10 , [35] Underfull \hbox (badness 10000) in paragraph at lines 2908--2908 []\T1/ptm/m/it/10 timestep\T1/ptm/m/n/10 , \T1/ptm/m/it/10 file- Underfull \hbox (badness 10000) in paragraph at lines 2925--2925 []\T1/ptm/m/it/10 schema_path\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ini-tial=1.0\T1/p tm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2925--2925 \T1/ptm/m/it/10 box_duration=365\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de- [36] Underfull \hbox (badness 5548) in paragraph at lines 3032--3035 []\T1/ptm/m/n/10 EMOD/DTK for-mat mi-gra-tion files (and as-so-ci-ated meta-dat a files) can be writ-ten with mi-gra- [37] Underfull \hbox (badness 10000) in paragraph at lines 3298--3298 \T1/ptm/m/it/10 num_nodes=100\T1/ptm/m/n/10 , \T1/ptm/m/it/10 mig_factor=1.0\T1 /ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3298--3298 \T1/ptm/m/it/10 frac_rural=0.3\T1/ptm/m/n/10 , \T1/ptm/m/it/10 id_ref=\TS1/ptm/ m/it/10 '\T1/ptm/m/it/10 from_params\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm/ m/it/10 mi- [38] Overfull \hbox (68.98433pt too wide) in paragraph at lines 3309--3309 []\T1/ptm/m/it/10 demographics_file_path: Underfull \hbox (badness 10000) in paragraph at lines 3309--3309 [][]\T1/ptm/m/it/10 str[][]\T1/ptm/m/n/10 , Overfull \hbox (2.42482pt too wide) in paragraph at lines 3309--3309 \T1/ptm/m/it/10 params: Underfull \hbox (badness 10000) in paragraph at lines 3309--3309 [][]\T1/ptm/m/it/10 str[][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3309--3309 \T1/ptm/m/it/10 id_ref: Underfull \hbox (badness 10000) in paragraph at lines 3309--3309 [][]\T1/ptm/m/it/10 str[][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3309--3309 \T1/ptm/m/it/10 mi-gra- Overfull \hbox (24.21457pt too wide) in paragraph at lines 3309--3309 \T1/ptm/m/it/10 tion_type=1\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 3309--3309 \OMS/cmsy/m/n/10 !$ Overfull \hbox (135.19371pt too wide) in paragraph at lines 3309--3309 [][]\T1/ptm/m/it/10 emod_api.migration.migration.Migration[][] Overfull \hbox (2.15437pt too wide) in paragraph at lines 3337--3337 []\T1/ptm/m/it/10 demographics_file_path\T1/ptm/m/n/10 , [39] Overfull \hbox (24.70302pt too wide) in paragraph at lines 3391--3391 []\T1/ptm/m/it/10 path_to_binary\T1/ptm/m/n/10 , \T1/ptm/m/it/10 path_to_write_ schema=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 schema.json\TS1/ptm/m/it/10 '\T1/pcr/m /n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 3412--3412 []\T1/ptm/m/it/10 input_serpop_path\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3412--3412 \T1/ptm/m/it/10 mod_fn=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3433--3433 []\T1/ptm/m/it/10 file: [40] [41] Underfull \hbox (badness 10000) in paragraph at lines 3559--3559 []\T1/ptm/m/it/10 name: [][]str[][]\T1/ptm/m/n/10 , \T1/ptm/m/it/10 han-dle\T1/ ptm/m/n/10 , \T1/ptm/m/it/10 cur- Underfull \hbox (badness 10000) in paragraph at lines 3594--3594 []\T1/ptm/m/it/10 handle\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cur- [42] Underfull \hbox (badness 7256) in paragraph at lines 3723--3723 \T1/ptm/m/it/10 True, \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 date\TS1/ptm/m/it/10 '\ T1/ptm/m/it/10 : \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Thu Nov 18 Underfull \hbox (badness 5050) in paragraph at lines 3723--3723 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 tool\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 : \TS1/ ptm/m/it/10 '\T1/ptm/m/it/10 dtk-File-Tools.py\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 , \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 ver- [43] [44] Underfull \hbox (badness 10000) in paragraph at lines 3957--3957 \T1/ptm/m/it/10 List[[][]int[][]] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 data: Underfull \hbox (badness 10000) in paragraph at lines 3957--3957 \T1/ptm/m/it/10 numpy.array = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start: [45] [46] [47] [48] [49] [50] Chapter 4. [51] [52] Overfull \hbox (66.6225pt too wide) in paragraph at lines 4496--4497 []\T1/pcr/m/n/10 emod_api.config.default_from_schema_no_validation\T1/ptm/m/n/1 0 , Overfull \hbox (36.6225pt too wide) in paragraph at lines 4497--4498 []\T1/pcr/m/n/10 emod_api.config.dtk_post_process_adhocevents\T1/ptm/m/n/10 , Overfull \hbox (30.6225pt too wide) in paragraph at lines 4498--4499 []\T1/pcr/m/n/10 emod_api.config.dtk_pre_process_adhocevents\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4499--4500 []\T1/pcr/m/n/10 emod_api.config.dtk_pre_process_w5ml\T1/ptm/m/n/10 , Overfull \hbox (12.6225pt too wide) in paragraph at lines 4507--4508 []\T1/pcr/m/n/10 emod_api.demographics.demographics_utils\T1/ptm/m/n/10 , Overfull \hbox (30.6225pt too wide) in paragraph at lines 4508--4509 []\T1/pcr/m/n/10 emod_api.demographics.DemographicsGenerator\T1/ptm/m/n/10 , Overfull \hbox (72.6225pt too wide) in paragraph at lines 4509--4510 []\T1/pcr/m/n/10 emod_api.demographics.DemographicsInputDataParsers\T1/ptm/m/n/ 10 , Overfull \hbox (30.6225pt too wide) in paragraph at lines 4510--4511 []\T1/pcr/m/n/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 , Overfull \hbox (6.6225pt too wide) in paragraph at lines 4511--4512 []\T1/pcr/m/n/10 emod_api.demographics.grid_construction\T1/ptm/m/n/10 , Overfull \hbox (42.6225pt too wide) in paragraph at lines 4513--4514 []\T1/pcr/m/n/10 emod_api.demographics.PreDefinedDistributions\T1/ptm/m/n/10 , Overfull \hbox (42.6225pt too wide) in paragraph at lines 4514--4515 []\T1/pcr/m/n/10 emod_api.demographics.PropertiesAndAttributes\T1/ptm/m/n/10 , Overfull \hbox (0.6225pt too wide) in paragraph at lines 4518--4519 []\T1/pcr/m/n/10 emod_api.interventions.import_pressure\T1/ptm/m/n/10 , Overfull \hbox (0.6225pt too wide) in paragraph at lines 4519--4520 []\T1/pcr/m/n/10 emod_api.interventions.node_multiplier\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4521--4522 []\T1/pcr/m/n/10 emod_api.interventions.simple_vaccine\T1/ptm/m/n/10 , Overfull \hbox (6.6225pt too wide) in paragraph at lines 4528--4529 []\T1/pcr/m/n/10 emod_api.schema.dtk_post_process_schema\T1/ptm/m/n/10 , Overfull \hbox (0.6225pt too wide) in paragraph at lines 4532--4533 []\T1/pcr/m/n/10 emod_api.serialization.CensusAndModPop\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4533--4534 []\T1/pcr/m/n/10 emod_api.serialization.dtkFileSupport\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4535--4536 []\T1/pcr/m/n/10 emod_api.serialization.dtkFileUtility\T1/ptm/m/n/10 , Overfull \hbox (30.6225pt too wide) in paragraph at lines 4536--4537 []\T1/pcr/m/n/10 emod_api.serialization.SerializedPopulation\T1/ptm/m/n/10 , [53] (./institute-for-disease-modeling-emod-api.ind [54] Overfull \hbox (88.70953pt too wide) in paragraph at lines 8--10 []\T1/pcr/m/n/10 add() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Pr opertiesAndAttributes.IndividualProperties Overfull \hbox (148.70953pt too wide) in paragraph at lines 11--13 []\T1/pcr/m/n/10 add_parameter() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demog raphics.PropertiesAndAttributes.IndividualProperties Overfull \hbox (61.87129pt too wide) in paragraph at lines 13--15 []\T1/pcr/m/n/10 add_parameter() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demog raphics.Updateable.Updateable Underfull \hbox (badness 10000) in paragraph at lines 15--17 []\T1/pcr/m/n/10 AddAgeDependentTransmission() Overfull \hbox (34.06111pt too wide) in paragraph at lines 15--17 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 17--19 []\T1/pcr/m/n/10 AddIndividualPropertyAndHINT() Overfull \hbox (34.06111pt too wide) in paragraph at lines 17--19 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 19--21 []\T1/pcr/m/n/10 AgeStructureUNWPP() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (15.62103pt too wide) in paragraph at lines 19--21 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Overfull \hbox (7.30118pt too wide) in paragraph at lines 21--23 []\T1/pcr/m/n/10 AgesYears() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration .migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 23--24 []\T1/pcr/m/n/10 AIR \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.migrati on.Migration at- Overfull \hbox (37.49991pt too wide) in paragraph at lines 24--26 []\T1/pcr/m/n/10 append() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializatio n.dtkFileTools.DtkFile.Contents Overfull \hbox (32.4899pt too wide) in paragraph at lines 26--28 []\T1/pcr/m/n/10 append() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializatio n.dtkFileTools.DtkFile.Objects Underfull \hbox (badness 10000) in paragraph at lines 28--30 []\T1/pcr/m/n/10 application() 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Overfull \hbox (85.96114pt too wide) in paragraph at lines 36--38 []\T1/pcr/m/n/10 apply_overlay() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demog raphics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 38--40 []\T1/pcr/m/n/10 apply_to_defaults_or_nodes() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 i n mod-ule Underfull \hbox (badness 10000) in paragraph at lines 38--40 \T1/ptm/m/it/10 emod_api.demographics.demographics_utils\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 40--42 []\T1/pcr/m/n/10 arcsec_to_deg() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (17.1711pt too wide) in paragraph at lines 40--42 \T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/ptm/m/n/10 ), Overfull \hbox (62.83089pt too wide) in paragraph at lines 42--44 []\T1/pcr/m/n/10 as_dataframe() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channe lreports.channels.ChannelReport Overfull \hbox (41.61118pt too wide) in paragraph at lines 44--46 []\T1/pcr/m/n/10 as_dictionary() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.chann elreports.channels.Channel Overfull \hbox (37.71117pt too wide) in paragraph at lines 46--48 []\T1/pcr/m/n/10 as_dictionary() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.chann elreports.channels.Header Underfull \hbox (badness 10000) in paragraph at lines 50--52 []\T1/pcr/m/n/10 Author() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.mi gration.Migration Underfull \hbox (badness 10000) in paragraph at lines 59--61 []\T1/pcr/m/n/10 BaseInputFile \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 59--61 \T1/ptm/m/it/10 emod_api.demographics.BaseInputFile\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 61--62 []\T1/pcr/m/n/10 basicNode() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 62--64 []\T1/pcr/m/n/10 birth_rate() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demograp hics.Node.Node Underfull \hbox (badness 10000) in paragraph at lines 64--66 []\T1/pcr/m/n/10 BroadcastEvent() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 66--68 []\T1/pcr/m/n/10 BroadcastEventToOtherNodes() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 i n mod-ule Overfull \hbox (23.59027pt too wide) in paragraph at lines 69--71 []\T1/pcr/m/n/10 byte_count() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializ ation.dtkFileTools.DtkFile Underfull \hbox (badness 7291) in paragraph at lines 74--76 []\T1/pcr/m/n/10 change_individual_property_at_age() \T1/ptm/m/n/10 (\T1/ptm/m/ it/10 in Underfull \hbox (badness 10000) in paragraph at lines 76--78 []\T1/pcr/m/n/10 change_ser_pop() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 76--78 \T1/ptm/m/it/10 emod_api.serialization.CensusAndModPop\T1/ptm/m/n/10 ), [55] Overfull \hbox (68.83089pt too wide) in paragraph at lines 79--81 []\T1/pcr/m/n/10 channel_names() \T1/ptm/m/n/10 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in paragraph at lines 122--124 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.weather.weather.Metadata prop- Underfull \hbox (badness 10000) in paragraph at lines 124--126 []\T1/pcr/m/n/10 datavalue_count() Underfull \hbox (badness 10000) in paragraph at lines 124--126 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.weather.weather.Weather prop- Overfull \hbox (20.22127pt too wide) in paragraph at lines 126--128 []\T1/pcr/m/n/10 DatavalueCount() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migr ation.migration.Layer Overfull \hbox (37.30118pt too wide) in paragraph at lines 128--130 []\T1/pcr/m/n/10 DatavalueCount() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migr ation.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 130--132 []\T1/pcr/m/n/10 date() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serialization. dtkFileTools.DtkFile Overfull \hbox (19.30118pt too wide) in paragraph at lines 132--134 []\T1/pcr/m/n/10 DateCreated() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migrati on.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 134--136 []\T1/pcr/m/n/10 default_population Underfull \hbox (badness 10000) in paragraph at lines 134--136 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Node.Node at- Underfull \hbox (badness 7291) in paragraph at lines 136--138 []\T1/pcr/m/n/10 DefaultSusceptibilityDistribution() \T1/ptm/m/n/10 (\T1/ptm/m/ it/10 in Overfull \hbox (46.96086pt too wide) in paragraph at lines 136--138 \T1/ptm/m/it/10 mod-ule emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/ 10 ), Underfull \hbox (badness 10000) in paragraph at lines 138--140 []\T1/pcr/m/n/10 DelayedIntervention() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 140--142 []\T1/pcr/m/n/10 Demographics \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 140--142 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 142--144 []\T1/pcr/m/n/10 DemographicsGenerator \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Overfull \hbox (17.1711pt too wide) in paragraph at lines 142--144 \T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 144--146 []\T1/pcr/m/n/10 DemographicsOverlay \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 144--146 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 146--148 []\T1/pcr/m/n/10 DemographicsType \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Overfull \hbox (17.1711pt too wide) in paragraph at lines 146--148 \T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 148--150 []\T1/pcr/m/n/10 do_mapping_from_events() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule Overfull \hbox (4.2412pt too wide) in paragraph at lines 148--150 \T1/ptm/m/it/10 emod_api.config.dtk_pre_process_adhocevents\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 151--153 []\T1/pcr/m/n/10 dtk_to_schema() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (56.83089pt too wide) in paragraph at lines 153--155 []\T1/pcr/m/n/10 dtk_version() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channel reports.channels.ChannelReport Overfull \hbox (25.71117pt too wide) in paragraph at lines 155--157 []\T1/pcr/m/n/10 dtk_version() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channel reports.channels.Header Underfull \hbox (badness 10000) in paragraph at lines 158--160 []\T1/pcr/m/n/10 DtkFile.Contents \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 160--162 []\T1/pcr/m/n/10 DtkFile.Objects \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 162--164 []\T1/pcr/m/n/10 DtkFileV1 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 164--166 []\T1/pcr/m/n/10 DtkFileV2 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 166--168 []\T1/pcr/m/n/10 DtkFileV2.NodesV2 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 168--170 []\T1/pcr/m/n/10 DtkFileV3 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 170--172 []\T1/pcr/m/n/10 DtkFileV3.NodesV3 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in [56] Underfull \hbox (badness 10000) in paragraph at lines 172--174 []\T1/pcr/m/n/10 DtkFileV4 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 174--176 []\T1/pcr/m/n/10 DtkHeader \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 176--178 []\T1/pcr/m/n/10 duplicate_nodeID_check() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule Overfull \hbox (46.65079pt too wide) in paragraph at lines 176--178 \T1/ptm/m/it/10 emod_api.demographics.DemographicsInputDataParsers\T1/ptm/m/n/1 0 ), Underfull \hbox (badness 10000) in paragraph at lines 181--183 []\T1/pcr/m/n/10 EllZeeFour \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Overfull \hbox (64.1225pt too wide) in paragraph at lines 195--196 []\T1/pcr/m/n/10 emod_api.config.default_from_schema_no_validation Overfull \hbox (34.1225pt too wide) in paragraph at lines 197--198 []\T1/pcr/m/n/10 emod_api.config.dtk_post_process_adhocevents Overfull \hbox (28.1225pt too wide) in paragraph at lines 199--200 []\T1/pcr/m/n/10 emod_api.config.dtk_pre_process_adhocevents Overfull \hbox (10.1225pt too wide) in paragraph at lines 217--218 []\T1/pcr/m/n/10 emod_api.demographics.demographics_utils Overfull \hbox (28.1225pt too wide) in paragraph at lines 219--220 []\T1/pcr/m/n/10 emod_api.demographics.DemographicsGenerator Overfull \hbox (70.1225pt too wide) in paragraph at lines 221--222 []\T1/pcr/m/n/10 emod_api.demographics.DemographicsInputDataParsers Overfull \hbox (28.1225pt too wide) in paragraph at lines 223--224 []\T1/pcr/m/n/10 emod_api.demographics.DemographicsTemplates Overfull \hbox (4.1225pt too wide) in paragraph at lines 225--226 []\T1/pcr/m/n/10 emod_api.demographics.grid_construction Overfull \hbox (40.1225pt too wide) in paragraph at lines 229--230 []\T1/pcr/m/n/10 emod_api.demographics.PreDefinedDistributions Overfull \hbox (40.1225pt too wide) in paragraph at lines 231--232 []\T1/pcr/m/n/10 emod_api.demographics.PropertiesAndAttributes Overfull \hbox (4.1225pt too wide) in paragraph at lines 259--260 []\T1/pcr/m/n/10 emod_api.schema.dtk_post_process_schema Overfull \hbox (28.1225pt too wide) in paragraph at lines 275--276 []\T1/pcr/m/n/10 emod_api.serialization.SerializedPopulation [57] Overfull \hbox (15.62103pt too wide) in paragraph at lines 287--289 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 289--291 []\T1/pcr/m/n/10 examine_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 299--301 []\T1/pcr/m/n/10 fill_nodes_legacy() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (46.65079pt too wide) in paragraph at lines 299--301 \T1/ptm/m/it/10 emod_api.demographics.DemographicsInputDataParsers\T1/ptm/m/n/1 0 ), Overfull \hbox (4.62106pt too wide) in paragraph at lines 301--303 []\T1/pcr/m/n/10 finalize() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.schema_to_ class.ReadOnlyDict Overfull \hbox (36.30013pt too wide) in paragraph at lines 303--305 []\T1/pcr/m/n/10 find() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule emod_api.ser ialization.SerializedPopulation\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 305--307 []\T1/pcr/m/n/10 flattenConfig() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (81.59949pt too wide) in paragraph at lines 307--309 []\T1/pcr/m/n/10 flush() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serialization .SerializedPopulation.SerializedPopulation Underfull \hbox (badness 10000) in paragraph at lines 311--313 []\T1/pcr/m/n/10 from_csv() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 311--313 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 313--314 []\T1/pcr/m/n/10 from_csv() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 314--316 []\T1/pcr/m/n/10 from_data() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demograph ics.Node.Node Underfull \hbox (badness 10000) in paragraph at lines 316--318 []\T1/pcr/m/n/10 from_dataframe() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (17.1711pt too wide) in paragraph at lines 316--318 \T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/ptm/m/n/10 ), Overfull \hbox (16.1225pt too wide) in paragraph at lines 320--322 []\T1/pcr/m/n/10 from_demog_and_param_gravity_webservice() Overfull \hbox (122.1895pt too wide) in paragraph at lines 322--324 []\T1/pcr/m/n/10 from_dict() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demograph ics.PropertiesAndAttributes.IndividualAttributes Overfull \hbox (188.8387pt too wide) in paragraph at lines 324--326 []\T1/pcr/m/n/10 from_dict() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demograph ics.PropertiesAndAttributes.IndividualAttributes.AgeDistribution Overfull \hbox (211.16812pt too wide) in paragraph at lines 326--328 []\T1/pcr/m/n/10 from_dict() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demograph ics.PropertiesAndAttributes.IndividualAttributes.MortalityDistribution Overfull \hbox (102.18979pt too wide) in paragraph at lines 328--330 []\T1/pcr/m/n/10 from_dict() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demograph ics.PropertiesAndAttributes.NodeAttributes Underfull \hbox (badness 10000) in paragraph at lines 330--332 []\T1/pcr/m/n/10 from_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.weather.w eather.Metadata Underfull \hbox (badness 10000) in paragraph at lines 332--334 []\T1/pcr/m/n/10 from_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 332--334 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 334--336 []\T1/pcr/m/n/10 from_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (17.1711pt too wide) in paragraph at lines 334--336 \T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 336--337 []\T1/pcr/m/n/10 from_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 337--339 []\T1/pcr/m/n/10 from_params() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 337--339 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 339--340 []\T1/pcr/m/n/10 from_params() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 340--342 []\T1/pcr/m/n/10 from_pop_csv() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 340--342 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 342--344 []\T1/pcr/m/n/10 from_template_node() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 342--344 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 344--346 []\T1/pcr/m/n/10 FullRisk() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (15.62103pt too wide) in paragraph at lines 344--346 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Overfull \hbox (37.30118pt too wide) in paragraph at lines 349--351 []\T1/pcr/m/n/10 GenderDataType() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migr ation.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 351--353 []\T1/pcr/m/n/10 generate_demographics() Overfull \hbox (115.97037pt too wide) in paragraph at lines 351--353 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator.Dem ographicsGenerator Overfull \hbox (80.97084pt too wide) in paragraph at lines 353--355 []\T1/pcr/m/n/10 generate_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demog raphics.BaseInputFile.BaseInputFile Overfull \hbox (85.96114pt too wide) in paragraph at lines 355--357 []\T1/pcr/m/n/10 generate_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demog raphics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 357--359 []\T1/pcr/m/n/10 generate_headers() Overfull \hbox (29.07082pt too wide) in paragraph at lines 357--359 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.BaseInputFile.BaseInputFi le Underfull \hbox (badness 10000) in paragraph at lines 359--361 []\T1/pcr/m/n/10 generate_metadata() Overfull \hbox (115.97037pt too wide) in paragraph at lines 359--361 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator.Dem ographicsGenerator Overfull \hbox (173.87039pt too wide) in paragraph at lines 361--363 []\T1/pcr/m/n/10 generate_nodes() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demo graphics.DemographicsGenerator.DemographicsGenerator Underfull \hbox (badness 10000) in paragraph at lines 364--366 []\T1/pcr/m/n/10 get_bbox() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 364--366 \T1/ptm/m/it/10 emod_api.demographics.grid_construction\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 366--368 []\T1/pcr/m/n/10 get_class_with_defaults() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in m od-ule Overfull \hbox (62.64088pt too wide) in paragraph at lines 368--370 \T1/ptm/m/it/10 mod-ule emod_api.config.default_from_schema_no_validation\T1/pt m/m/n/10 ), Overfull \hbox (45.42091pt too wide) in paragraph at lines 370--372 \T1/ptm/m/it/10 ule emod_api.config.default_from_schema_no_validation\T1/ptm/m/ n/10 ), [58] Underfull \hbox (badness 10000) in paragraph at lines 375--377 []\T1/pcr/m/n/10 get_fert_dist() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (15.62103pt too wide) in paragraph at lines 375--377 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 377--379 []\T1/pcr/m/n/10 get_grid_cell_id() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 377--379 \T1/ptm/m/it/10 emod_api.demographics.grid_construction\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 379--381 []\T1/pcr/m/n/10 get_next_individual_suid() Overfull \hbox (77.69946pt too wide) in paragraph at lines 379--381 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serialization.SerializedPopulation.Ser ializedPopulation Underfull \hbox (badness 10000) in paragraph at lines 381--383 []\T1/pcr/m/n/10 get_next_infection_suid() Overfull \hbox (77.69946pt too wide) in paragraph at lines 381--383 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serialization.SerializedPopulation.Ser ializedPopulation Overfull \hbox (55.96114pt too wide) in paragraph at lines 383--385 []\T1/pcr/m/n/10 get_node() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographi cs.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 385--387 []\T1/pcr/m/n/10 get_node_ids_from_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 385--387 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 387--389 []\T1/pcr/m/n/10 get_node_offsets() Underfull \hbox (badness 10000) in paragraph at lines 387--389 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[]\T1/pcr/m/n/10 get_waning_from_params() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 399--401 []\T1/pcr/m/n/10 get_xpix_ypix() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (26.83089pt too wide) in paragraph at lines 405--407 []\T1/pcr/m/n/10 header() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channelrepor ts.channels.ChannelReport Underfull \hbox (badness 10000) in paragraph at lines 416--418 []\T1/pcr/m/n/10 id() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.spatialreports.s patial.SpatialNode Underfull \hbox (badness 7308) in paragraph at lines 418--419 []\T1/pcr/m/n/10 id() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.weather.weather. WeatherNode prop- Overfull \hbox (6.84114pt too wide) in paragraph at lines 419--421 []\T1/pcr/m/n/10 id_reference() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.weathe r.weather.Metadata Overfull \hbox (1.47115pt too wide) in paragraph at lines 421--423 []\T1/pcr/m/n/10 id_reference() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.weathe r.weather.Weather Underfull \hbox (badness 10000) in paragraph at lines 423--425 []\T1/pcr/m/n/10 IDREF_GRUMP1DEGREE Underfull \hbox (badness 10000) in paragraph at lines 423--425 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 425--427 []\T1/pcr/m/n/10 IDREF_GRUMP2PT5ARCMIN Underfull \hbox (badness 10000) in paragraph at lines 425--427 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 427--429 []\T1/pcr/m/n/10 IDREF_GRUMP30ARCSEC Underfull \hbox (badness 10000) in paragraph at lines 427--429 \T1/ptm/m/n/10 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Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 616--618 []\T1/pcr/m/n/10 Nodes() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.mig ration.Migration Underfull \hbox (badness 5802) in paragraph at lines 618--620 []\T1/pcr/m/n/10 nodes() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serialization .dtkFileTools.DtkFile Overfull \hbox (81.59949pt too wide) in paragraph at lines 620--622 []\T1/pcr/m/n/10 nodes() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serialization .SerializedPopulation.SerializedPopulation [61] Overfull \hbox (2.8303pt too wide) in paragraph at lines 622--624 []\T1/pcr/m/n/10 nodes() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.spatialreport s.spatial.SpatialReport Underfull \hbox (badness 10000) in paragraph at lines 625--626 []\T1/pcr/m/n/10 nodes() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.weather.weath er.Weather prop- Underfull \hbox (badness 10000) in paragraph at lines 626--628 []\T1/pcr/m/n/10 nodes_for_DTK() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 628--630 []\T1/pcr/m/n/10 NoInitialPrevalence() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-u le Overfull \hbox (15.62103pt too wide) in paragraph at lines 628--630 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 630--632 []\T1/pcr/m/n/10 NoRisk() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (15.62103pt too wide) in paragraph at lines 630--632 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Overfull \hbox (8.94016pt too wide) in paragraph at lines 632--634 []\T1/pcr/m/n/10 NullPtr \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in emod_api.seri alization.dtkFileSupport\T1/ptm/m/n/10 ), Overfull \hbox (62.83089pt too wide) in paragraph at lines 634--636 []\T1/pcr/m/n/10 num_channels() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channe lreports.channels.ChannelReport Overfull \hbox (31.71117pt too 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Underfull \hbox (badness 10000) in paragraph at lines 669--671 []\T1/pcr/m/n/10 REGIONAL \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.mi gration.Migration Overfull \hbox (56.83089pt too wide) in paragraph at lines 671--673 []\T1/pcr/m/n/10 report_type() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channel reports.channels.ChannelReport Overfull \hbox (25.71117pt too wide) in paragraph at lines 673--675 []\T1/pcr/m/n/10 report_type() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channel reports.channels.Header Overfull \hbox (74.83089pt too wide) in paragraph at lines 675--677 []\T1/pcr/m/n/10 report_version() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.chan nelreports.channels.ChannelReport Overfull \hbox (43.71117pt too wide) in paragraph at lines 677--679 []\T1/pcr/m/n/10 report_version() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.chan nelreports.channels.Header Overfull \hbox (4.77174pt too wide) in paragraph at lines 679--681 []\T1/pcr/m/n/10 res_in_degrees \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demogr aphics.Node.Node Underfull \hbox (badness 10000) in paragraph at lines 686--688 []\T1/pcr/m/n/10 SAME_FOR_BOTH_GENDERS Underfull \hbox (badness 10000) in paragraph at lines 686--688 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 689--691 []\T1/pcr/m/n/10 ScheduledCampaignEvent() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 691--693 []\T1/pcr/m/n/10 schema_to_config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 691--693 \T1/ptm/m/it/10 emod_api.config.from_poi_and_binary\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 693--695 []\T1/pcr/m/n/10 schema_to_config_subnode() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (31.30106pt too wide) in paragraph at lines 693--695 \T1/ptm/m/it/10 emod_api.config.default_from_schema_no_validation\T1/ptm/m/n/10 ), 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graphics.DemographicsGenerator.DemographicsGenerator [62] Underfull \hbox (badness 10000) in paragraph at lines 714--716 []\T1/pcr/m/n/10 set_risk_mod() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 714--716 \T1/ptm/m/it/10 emod_api.demographics.demographics_utils\T1/ptm/m/n/10 ), Overfull \hbox (16.62106pt too wide) in paragraph at lines 716--718 []\T1/pcr/m/n/10 set_schema() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.schema_t o_class.ReadOnlyDict Underfull \hbox (badness 10000) in paragraph at lines 719--721 []\T1/pcr/m/n/10 set_schema() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 719--721 \T1/ptm/m/it/10 emod_api.config.from_poi_and_binary\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 721--723 []\T1/pcr/m/n/10 set_static_demographics() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in m od-ule Underfull \hbox (badness 10000) in paragraph at lines 721--723 \T1/ptm/m/it/10 emod_api.demographics.demographics_utils\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 723--725 []\T1/pcr/m/n/10 SetAgeDistribution() Overfull \hbox (34.06111pt too wide) in paragraph at lines 723--725 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Overfull \hbox (79.96114pt too wide) in paragraph at lines 725--727 []\T1/pcr/m/n/10 SetBirthRate() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demogr aphics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 727--729 []\T1/pcr/m/n/10 SetConstantRisk() Overfull \hbox (34.06111pt too wide) in paragraph at lines 727--729 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 729--731 []\T1/pcr/m/n/10 SetConstantSusceptibility() Overfull \hbox (34.06111pt too wide) in paragraph at lines 729--731 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull 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emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 739--741 []\T1/pcr/m/n/10 SetDefaultProperties() Overfull \hbox (34.06111pt too wide) in paragraph at lines 739--741 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 741--743 []\T1/pcr/m/n/10 SetDefaultPropertiesFertMort() Overfull \hbox (34.06111pt too wide) in paragraph at lines 741--743 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Overfull \hbox (34.1225pt too wide) in paragraph at lines 743--745 []\T1/pcr/m/n/10 SetEquilibriumAgeDistFromBirthAndMortRates() Overfull \hbox (34.06111pt too wide) in paragraph at lines 743--745 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 745--747 []\T1/pcr/m/n/10 SetHeteroRiskExponDist() Overfull \hbox (34.06111pt too wide) in paragraph at lines 745--747 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 747--749 []\T1/pcr/m/n/10 SetHeteroRiskLognormalDist() Overfull \hbox (34.06111pt too wide) in paragraph at lines 747--749 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 749--751 []\T1/pcr/m/n/10 SetHeteroRiskUniformDist() Overfull \hbox (34.06111pt too wide) in paragraph at lines 749--751 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 751--753 []\T1/pcr/m/n/10 SetIndividualAttributesWithFertMort() Overfull \hbox (34.06111pt too wide) in paragraph at lines 751--753 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 753--755 []\T1/pcr/m/n/10 SetInitialAgeExponential() Overfull \hbox (34.06111pt too wide) in paragraph at lines 753--755 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 755--757 []\T1/pcr/m/n/10 SetInitialAgeLikeSubSaharanAfrica() Overfull \hbox (34.06111pt too wide) in paragraph at lines 755--757 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 757--759 []\T1/pcr/m/n/10 SetInitPrevFromUniformDraw() Overfull \hbox (34.06111pt too wide) in paragraph at lines 757--759 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 759--761 []\T1/pcr/m/n/10 SetMinimalNodeAttributes() Overfull \hbox (34.06111pt too wide) in paragraph at lines 759--761 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 761--763 []\T1/pcr/m/n/10 SetMortalityDistribution() Overfull \hbox (34.06111pt too wide) in paragraph at lines 761--763 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 763--765 []\T1/pcr/m/n/10 SetMortalityRate() Overfull \hbox (34.06111pt too wide) in paragraph at lines 763--765 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 765--767 []\T1/pcr/m/n/10 SetNodeDefaultFromTemplate() Overfull \hbox (34.06111pt too wide) in paragraph at lines 765--767 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 767--769 []\T1/pcr/m/n/10 SetOverdispersion() Overfull \hbox (34.06111pt too wide) in paragraph at lines 767--769 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 769--771 []\T1/pcr/m/n/10 SimpleSusceptibilityDistribution() \T1/ptm/m/n/10 (\T1/ptm/m/i t/10 in Overfull \hbox (46.96086pt too wide) in paragraph at lines 769--771 \T1/ptm/m/it/10 mod-ule emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/ 10 ), Overfull \hbox (34.70026pt too wide) in paragraph at lines 771--773 []\T1/pcr/m/n/10 simulation() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializ ation.dtkFileTools.DtkFileV1 Overfull \hbox (34.70026pt too wide) in paragraph at lines 773--775 []\T1/pcr/m/n/10 simulation() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializ ation.dtkFileTools.DtkFileV2 Overfull \hbox (34.70026pt too wide) in paragraph at lines 775--777 []\T1/pcr/m/n/10 simulation() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializ ation.dtkFileTools.DtkFileV3 Overfull \hbox (2.94016pt too wide) in paragraph at lines 777--778 []\T1/pcr/m/n/10 Snappy \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in emod_api.seria lization.dtkFileSupport\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 778--779 []\T1/pcr/m/n/10 SpatialNode \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 779--781 []\T1/pcr/m/n/10 SpatialReport \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 781--783 []\T1/pcr/m/n/10 StandardDiagnostic() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ul e Overfull \hbox (2.8303pt too wide) in paragraph at lines 783--785 []\T1/pcr/m/n/10 start() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.spatialreport s.spatial.SpatialReport Overfull \hbox (50.83089pt too wide) in paragraph at lines 785--787 []\T1/pcr/m/n/10 start_time() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channelr eports.channels.ChannelReport Overfull \hbox (19.71117pt too wide) in paragraph at lines 787--789 []\T1/pcr/m/n/10 start_time() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channelr eports.channels.Header Overfull \hbox (91.05998pt too wide) in paragraph at lines 789--791 []\T1/pcr/m/n/10 STATIC 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\T1/ptm/m/it/10 schema_node=True\T1/ptm/m/n/10 , Overfull \hbox (102.79454pt too wide) in paragraph at lines 498--498 \T1/ptm/m/it/10 as_rod=False\T1/pcr/m/n/10 ) Overfull \hbox (79.14464pt too wide) in paragraph at lines 506--506 []\T1/ptm/m/it/10 path_to_schema\T1/ptm/m/n/10 , Overfull \hbox (27.35486pt too wide) in paragraph at lines 506--506 \T1/ptm/m/it/10 out- Overfull \hbox (152.67387pt too wide) in paragraph at lines 506--506 \T1/ptm/m/it/10 put_filename=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 default_config.j son\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (96.61464pt too wide) in paragraph at lines 506--506 \T1/ptm/m/it/10 schema_node=True\T1/pcr/m/n/10 ) Overfull \hbox (47.68495pt too wide) in paragraph at lines 516--516 []\T1/ptm/m/it/10 config\T1/pcr/m/n/10 ) Overfull \hbox (114.96484pt too wide) in paragraph at lines 530--530 []\T1/ptm/m/it/10 config_path\T1/ptm/m/n/10 , Overfull \hbox (95.13463pt too wide) in paragraph at lines 530--530 \T1/ptm/m/it/10 set_fn\T1/pcr/m/n/10 ) Overfull \hbox (126.96484pt too wide) in paragraph at lines 556--556 []\T1/ptm/m/it/10 config_path\T1/ptm/m/n/10 , Overfull \hbox (103.63463pt too wide) in paragraph at lines 556--556 \T1/ptm/m/it/10 set_fn\T1/ptm/m/n/10 , Overfull \hbox (95.01491pt too wide) in paragraph at lines 556--556 \T1/ptm/m/it/10 con- Overfull \hbox (133.8048pt too wide) in paragraph at lines 556--556 \T1/ptm/m/it/10 fig_out_path\T1/pcr/m/n/10 ) [9] Overfull \hbox (7.52466pt too wide) in paragraph at lines 594--594 \T1/ptm/m/it/10 hoc_events\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 624--624 []\T1/ptm/m/it/10 configjson_path\T1/ptm/m/n/10 , Overfull \hbox (63.52425pt too wide) in paragraph at lines 653--653 []\T1/ptm/m/it/10 start_config_dict\T1/ptm/m/n/10 , Overfull \hbox (71.87448pt too wide) in paragraph at lines 653--653 \T1/ptm/m/it/10 poi_set_param_fn\T1/pcr/m/n/10 ) Overfull \hbox (66.30441pt too wide) in paragraph at lines 662--662 []\T1/ptm/m/it/10 start_config_path\T1/ptm/m/n/10 , Overfull \hbox (71.87448pt too wide) in paragraph at lines 662--662 \T1/ptm/m/it/10 poi_set_param_fn\T1/pcr/m/n/10 ) Overfull \hbox (18.36475pt too wide) in paragraph at lines 671--671 []\T1/ptm/m/it/10 schema_path\T1/ptm/m/n/10 , Overfull \hbox (41.87448pt too wide) in paragraph at lines 671--671 \T1/ptm/m/it/10 poi_set_param_fn\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 680--680 []\T1/ptm/m/it/10 eradication_path\T1/ptm/m/n/10 , [10] Underfull \hbox (badness 10000) in paragraph at lines 728--730 []\T1/ptm/m/n/10 builder = s2c.SchemaConfigBuilder( Underfull \hbox (badness 10000) in paragraph at lines 737--737 []\T1/ptm/m/it/10 schema_name=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 schema.json\TS1 /ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 737--737 \T1/ptm/m/it/10 model=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 GENERIC_SIM\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 737--737 \T1/ptm/m/it/10 con-fig_out=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 config.json\TS1/p tm/m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (28.28418pt too wide) in paragraph at lines 748--748 []\T1/ptm/m/it/10 schema_name=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 schema.json\TS1 /ptm/m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (11.09424pt too wide) in paragraph at lines 748--748 \T1/ptm/m/it/10 model=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 GENERIC_SIM\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 748--748 \T1/ptm/m/it/10 con- Underfull \hbox (badness 10000) in paragraph at lines 748--748 \T1/ptm/m/it/10 fig_out=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 config.json\TS1/ptm/m /it/10 '\T1/ptm/m/n/10 , [11] Underfull \hbox (badness 10000) in paragraph at lines 791--791 \T1/ptm/m/it/10 name=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Erewhon\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 815--815 []\T1/ptm/m/it/10 tot_pop\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 815--815 \T1/ptm/m/it/10 num_nodes\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 824--824 []\T1/ptm/m/it/10 tot_pop=1000000\T1/ptm/m/n/10 , \T1/ptm/m/it/10 num_nodes=100 \T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 833--833 []\T1/ptm/m/it/10 input_file\T1/ptm/m/n/10 , \T1/ptm/m/it/10 res=0.008333333333 333333\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 841--841 []\T1/ptm/m/it/10 pop_filename_in\T1/ptm/m/n/10 , Overfull \hbox (28.44351pt too wide) in paragraph at lines 841--841 \T1/ptm/m/it/10 pop_filename_out=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 spatial_grid ded_pop_dir\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 847--847 []\T1/ptm/m/it/10 nodes\T1/ptm/m/n/10 , \T1/ptm/m/it/10 idref=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Gridded Underfull \hbox (badness 10000) in paragraph at lines 847--847 \T1/ptm/m/it/10 world grump2.5arcmin\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , [12] Overfull \hbox (149.53976pt too wide) in paragraph at lines 968--968 []\T1/ptm/m/it/10 distribution: [][]\T1/ptm/m/n/10 emod_api.demographics.Proper tiesAndAttributes.IndividualAttributes.MortalityDistribution[][] Overfull \hbox (98.42032pt too wide) in paragraph at lines 982--982 []\T1/ptm/m/it/10 distribution: [][]\T1/ptm/m/n/10 emod_api.demographics.Proper tiesAndAttributes.IndividualAttributes.AgeDistribution[][]\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1044--1044 []\T1/ptm/m/it/10 CrudeBirthRate=0.04\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Crude-Mor - [13] Underfull \hbox (badness 10000) in paragraph at lines 1133--1133 []\T1/ptm/m/it/10 file_male\T1/ptm/m/n/10 , \T1/ptm/m/it/10 file_female\T1/ptm/ m/n/10 , \T1/ptm/m/it/10 in-ter-val_fit=[1970, 1980]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1145--1145 []\T1/ptm/m/it/10 nodes=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1145--1145 \T1/ptm/m/it/10 meta_data: [][]dict[][] Overfull \hbox (7.52411pt too wide) in paragraph at lines 1145--1145 \T1/ptm/m/it/10 ual_attributes=None\T1/ptm/m/n/10 , Overfull \hbox (14.18416pt too wide) in paragraph at lines 1145--1145 \T1/ptm/m/it/10 node_attributes=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1145--1145 \T1/ptm/m/it/10 mor-tal- Overfull \hbox (16.5839pt too wide) in paragraph at lines 1145--1145 \T1/ptm/m/it/10 ity_distribution=None\T1/pcr/m/n/10 ) [14] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pcr.fd) Overfull \hbox (18.60422pt too wide) in paragraph at lines 1206--1206 []\T1/ptm/m/it/10 res_in_arcsec\T1/pcr/m/n/10 ) Overfull \hbox (13.07484pt too wide) in paragraph at lines 1225--1225 []\T1/ptm/m/it/10 nodes\T1/ptm/m/n/10 , Overfull \hbox (5.01491pt too wide) in paragraph at lines 1225--1225 \T1/ptm/m/it/10 con- Overfull \hbox (12.23463pt too wide) in paragraph at lines 1225--1225 \T1/ptm/m/it/10 cerns: Overfull \hbox (2.79494pt too wide) in paragraph at lines 1225--1225 \T1/ptm/m/it/10 Op- Overfull \hbox (457.54115pt too wide) in paragraph at lines 1225--1225 \T1/ptm/m/it/10 tional[Union[emod_api.dtk_tools.demographics.DemographicsGenera torConcern.DemographicsGeneratorConcern, Overfull \hbox (429.49101pt too wide) in paragraph at lines 1225--1225 \T1/ptm/m/it/10 List[emod_api.dtk_tools.demographics.DemographicsGeneratorConce rn.DemographicsGeneratorConcern]]] Underfull \hbox (badness 10000) in paragraph at lines 1225--1225 \T1/ptm/m/it/10 = Overfull \hbox (10.85487pt too wide) in paragraph at lines 1225--1225 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (84.4637pt too wide) in paragraph at lines 1225--1225 \T1/ptm/m/it/10 res_in_arcsec=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 custom\TS1/ptm/ m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (115.46402pt too wide) in paragraph at lines 1225--1225 \T1/ptm/m/it/10 node_id_from_lat_long=False\T1/pcr/m/n/10 ) [15] Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 []\T1/ptm/m/it/10 df\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-mo-graph- Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 ics_filename: Op- Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 tional[[][]str[][]] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 con-cerns: Op- Overfull \hbox (379.54115pt too wide) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 tional[Union[emod_api.dtk_tools.demographics.DemographicsGenera torConcern.DemographicsGeneratorConcern, Overfull \hbox (351.49101pt too wide) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 List[emod_api.dtk_tools.demographics.DemographicsGeneratorConce rn.DemographicsGeneratorConcern]]] Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Overfull \hbox (6.4637pt too wide) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 res_in_arcsec=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 custom\TS1/ptm/ m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (30.83415pt too wide) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 node_id_from_lat_long=True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 de-fault_population: Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 [][]\T1/ptm/m/it/10 int[][] = 1000\T1/ptm/m/n/10 , Overfull \hbox (79.21327pt too wide) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 load_other_columns_as_attributes=False\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 tional[List[[][]str[][]]] Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ex- Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 clude_columns: Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 Op-tional[List[[][]str[][]]] Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Overfull \hbox (0.89452pt too wide) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 nodeid_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 Op-tional[[][]str[][]] Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lat-i- Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 tude_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 lat\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lon-gi- Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 tude_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 tion_column_name: [16] Overfull \hbox (54.94496pt too wide) in paragraph at lines 1325--1326 []\T1/pcr/b/n/10 apply. If not specified, we use the DefaultWorldBankEquilibriu mConcern Underfull \hbox (badness 10000) in paragraph at lines 1373--1373 []\T1/ptm/m/it/10 population_input_file: Underfull \hbox (badness 10000) in paragraph at lines 1373--1373 [][]\T1/ptm/m/it/10 str[][]\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-mo-graph- Underfull \hbox (badness 7851) in paragraph at lines 1373--1373 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 con-cerns: Op- Overfull \hbox (349.54115pt too wide) in paragraph at lines 1373--1373 \T1/ptm/m/it/10 tional[Union[emod_api.dtk_tools.demographics.DemographicsGenera torConcern.DemographicsGeneratorConcern, Overfull \hbox (321.49101pt too wide) in paragraph at lines 1373--1373 \T1/ptm/m/it/10 List[emod_api.dtk_tools.demographics.DemographicsGeneratorConce rn.DemographicsGeneratorConcern]]] Underfull \hbox (badness 10000) in paragraph at lines 1373--1373 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1373--1373 \T1/ptm/m/it/10 res_in_arcsec=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 custom\TS1/ptm/ m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (0.83415pt too wide) in paragraph at lines 1373--1373 \T1/ptm/m/it/10 node_id_from_lat_long=True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1373--1373 \T1/ptm/m/it/10 de-fault_population: Underfull \hbox (badness 10000) in paragraph at lines 1373--1373 [][]\T1/ptm/m/it/10 int[][] = 1000\T1/ptm/m/n/10 , Overfull \hbox (49.21327pt too wide) in paragraph at lines 1373--1373 \T1/ptm/m/it/10 load_other_columns_as_attributes=False\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1373--1373 \T1/ptm/m/it/10 in-clude_columns: Op- Underfull \hbox (badness 10000) in paragraph at lines 1373--1373 \T1/ptm/m/it/10 tional[List[[][]str[][]]] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1373--1373 \T1/ptm/m/it/10 ex-clude_columns: Op- Underfull \hbox (badness 10000) in paragraph at lines 1373--1373 \T1/ptm/m/it/10 tional[List[[][]str[][]]] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1373--1373 \T1/ptm/m/it/10 nodeid_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1373--1373 \T1/ptm/m/it/10 Op-tional[[][]str[][]] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1373--1373 \T1/ptm/m/it/10 lat-i-tude_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1373--1373 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 lat\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lon-gi- Underfull \hbox (badness 10000) in paragraph at lines 1373--1373 \T1/ptm/m/it/10 tude_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1373--1373 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 lon\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pop-u-la- Underfull \hbox (badness 6236) in paragraph at lines 1373--1373 \T1/ptm/m/it/10 tion_column_name: [][]str[][] = [17] Overfull \hbox (54.94496pt too wide) in paragraph at lines 1388--1389 []\T1/pcr/b/n/10 apply. If not specified, we use the DefaultWorldBankEquilibriu mConcern Overfull \hbox (6.3048pt too wide) in paragraph at lines 1444--1444 []\T1/ptm/m/it/10 lat\T1/ptm/m/n/10 , Overfull \hbox (13.5249pt too wide) in paragraph at lines 1444--1444 \T1/ptm/m/it/10 long\T1/ptm/m/n/10 , Overfull \hbox (115.34473pt too wide) in paragraph at lines 1444--1444 \T1/ptm/m/it/10 res=0.008333333333333333\T1/pcr/m/n/10 ) Overfull \hbox (37.09444pt too wide) in paragraph at lines 1450--1450 []\T1/ptm/m/it/10 nodelist\T1/pcr/m/n/10 ) Overfull \hbox (11.74474pt too wide) in paragraph at lines 1456--1456 []\T1/ptm/m/it/10 node_info\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1456--1456 \T1/ptm/m/it/10 De- Underfull \hbox (badness 10000) in paragraph at lines 1456--1456 \T1/ptm/m/it/10 moDf\T1/ptm/m/n/10 , Overfull \hbox (91.34473pt too wide) in paragraph at lines 1456--1456 \T1/ptm/m/it/10 res=0.008333333333333333\T1/pcr/m/n/10 ) Overfull \hbox (71.74474pt too wide) in paragraph at lines 1462--1462 []\T1/ptm/m/it/10 node_info\T1/ptm/m/n/10 , Overfull \hbox (41.2549pt too wide) in paragraph at lines 1462--1462 \T1/ptm/m/it/10 ex- Overfull \hbox (118.90427pt too wide) in paragraph at lines 1462--1462 \T1/ptm/m/it/10 tra_data_columns=[]\T1/ptm/m/n/10 , Overfull \hbox (151.34473pt too wide) in paragraph at lines 1462--1462 \T1/ptm/m/it/10 res=0.008333333333333333\T1/pcr/m/n/10 ) [18] Underfull \hbox (badness 10000) in paragraph at lines 1502--1504 []\T1/ptm/m/n/10 json ob-ject aka python dict that can be di-rectly passed to D e-mo-graph- Underfull \hbox (badness 10000) in paragraph at lines 1515--1515 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1515--1515 \T1/ptm/m/it/10 mean=0.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1527--1529 []\T1/ptm/m/n/10 json ob-ject aka python dict that can be di-rectly passed to D e-mo-graph- Underfull \hbox (badness 10000) in paragraph at lines 1540--1540 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1546--1548 []\T1/ptm/m/n/10 json ob-ject aka python dict that can be di-rectly passed to D e-mo-graph- [19] Underfull \hbox (badness 10000) in paragraph at lines 1578--1578 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , \T1/ptm/m/it/10 low_prev\T1/ptm/m/n/10 , Underfull \hbox (badness 5091) in paragraph at lines 1578--1578 \T1/ptm/m/it/10 high_prev\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-scrip- Overfull \hbox (22.30493pt too wide) in paragraph at lines 1590--1590 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Overfull \hbox (7.6847pt too wide) in paragraph at lines 1590--1590 \T1/ptm/m/it/10 set- Overfull \hbox (34.0548pt too wide) in paragraph at lines 1590--1590 \T1/ptm/m/it/10 ting=1.0\T1/pcr/m/n/10 ) Overfull \hbox (10.30493pt too wide) in paragraph at lines 1596--1596 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1596--1596 \T1/ptm/m/it/10 pro- Overfull \hbox (58.54413pt too wide) in paragraph at lines 1596--1596 \T1/ptm/m/it/10 tected_setting=0.0\T1/ptm/m/n/10 , Overfull \hbox (9.20457pt too wide) in paragraph at lines 1596--1596 \T1/ptm/m/it/10 thresh- Overfull \hbox (53.51486pt too wide) in paragraph at lines 1596--1596 \T1/ptm/m/it/10 old_age=1825.0\T1/pcr/m/n/10 ) Overfull \hbox (46.30493pt too wide) in paragraph at lines 1602--1602 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Overfull \hbox (42.23488pt too wide) in paragraph at lines 1602--1602 \T1/ptm/m/it/10 mean- Overfull \hbox (44.91478pt too wide) in paragraph at lines 1602--1602 \T1/ptm/m/it/10 AgeAt- Overfull \hbox (28.90492pt too wide) in paragraph at lines 1602--1602 \T1/ptm/m/it/10 In- Overfull \hbox (32.23474pt too wide) in paragraph at lines 1602--1602 \T1/ptm/m/it/10 fec- Overfull \hbox (58.0548pt too wide) in paragraph at lines 1602--1602 \T1/ptm/m/it/10 tion=2.5\T1/pcr/m/n/10 ) Overfull \hbox (55.80493pt too wide) in paragraph at lines 1608--1608 []\T1/ptm/m/it/10 demog\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1614--1614 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1614--1614 \T1/ptm/m/it/10 age_bins\T1/ptm/m/n/10 , Overfull \hbox (25.80493pt too wide) in paragraph at lines 1636--1636 []\T1/ptm/m/it/10 demog\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1654--1655 []\T1/pcr/b/n/10 "15-19", etc. up to "45-49", and a column named "Years" with [20] Overfull \hbox (64.51184pt too wide) in paragraph at lines 1686--1686 [][]\T1/ptm/m/n/10 emod_api.demographics.PropertiesAndAttributes.IndividualAttr ibutes[][] Underfull \hbox (badness 10000) in paragraph at lines 1686--1686 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in-di-vid-ual_properties : Overfull \hbox (65.26187pt too wide) in paragraph at lines 1686--1686 [][]\T1/ptm/m/n/10 emod_api.demographics.PropertiesAndAttributes.IndividualProp erties[][] Underfull \hbox (badness 10000) in paragraph at lines 1686--1686 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 node_attributes: Overfull \hbox (45.31218pt too wide) in paragraph at lines 1686--1686 [][]\T1/ptm/m/n/10 emod_api.demographics.PropertiesAndAttributes.NodeAttributes [][] Overfull \hbox (22.9045pt too wide) in paragraph at lines 1780--1780 []\T1/ptm/m/it/10 nodeid\T1/ptm/m/n/10 , \T1/ptm/m/it/10 res_in_deg=0.041666666 666666664\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1786--1786 []\T1/ptm/m/it/10 lat\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lon\T1/ptm/m/n/10 , Overfull \hbox (9.16464pt too wide) in paragraph at lines 1786--1786 \T1/ptm/m/it/10 res_in_deg=0.041666666666666664\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1792--1792 []\T1/ptm/m/it/10 lat\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lon\T1/ptm/m/n/10 , [21] Overfull \hbox (59.95372pt too wide) in paragraph at lines 1816--1816 []\T1/ptm/m/it/10 initial_distribution: Overfull \hbox (21.8143pt too wide) in paragraph at lines 1816--1816 \T1/ptm/m/it/10 List[[][]float[][]] Underfull \hbox (badness 10000) in paragraph at lines 1816--1816 \T1/ptm/m/it/10 = Overfull \hbox (4.85487pt too wide) in paragraph at lines 1816--1816 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (3.0149pt too wide) in paragraph at lines 1816--1816 \T1/ptm/m/it/10 prop- Overfull \hbox (27.15454pt too wide) in paragraph at lines 1816--1816 \T1/ptm/m/it/10 erty=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1816--1816 \T1/ptm/m/it/10 val- Underfull \hbox (badness 10000) in paragraph at lines 1816--1816 \T1/ptm/m/it/10 ues: Overfull \hbox (21.8143pt too wide) in paragraph at lines 1816--1816 \T1/ptm/m/it/10 List[[][]float[][]] Underfull \hbox (badness 10000) in paragraph at lines 1816--1816 \T1/ptm/m/it/10 = Overfull \hbox (4.85487pt too wide) in paragraph at lines 1816--1816 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (1.09485pt too wide) in paragraph at lines 1816--1816 \T1/ptm/m/it/10 tran- Underfull \hbox (badness 10000) in paragraph at lines 1816--1816 \T1/ptm/m/it/10 si- Overfull \hbox (4.02464pt too wide) in paragraph at lines 1816--1816 \T1/ptm/m/it/10 tions: Overfull \hbox (21.8143pt too wide) in paragraph at lines 1816--1816 \T1/ptm/m/it/10 List[[][]float[][]] Underfull \hbox (badness 10000) in paragraph at lines 1816--1816 \T1/ptm/m/it/10 = Overfull \hbox (4.85487pt too wide) in paragraph at lines 1816--1816 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (4.98474pt too wide) in paragraph at lines 1816--1816 \T1/ptm/m/it/10 trans- Underfull \hbox (badness 10000) in paragraph at lines 1816--1816 \T1/ptm/m/it/10 mis- Overfull \hbox (32.35434pt too wide) in paragraph at lines 1816--1816 \T1/ptm/m/it/10 sion_matrix: Overfull \hbox (21.8143pt too wide) in paragraph at lines 1816--1816 \T1/ptm/m/it/10 List[[][]float[][]] Underfull \hbox (badness 10000) in paragraph at lines 1816--1816 \T1/ptm/m/it/10 = Overfull \hbox (8.35487pt too wide) in paragraph at lines 1816--1816 \T1/ptm/m/it/10 None\T1/pcr/m/n/10 ) Overfull \hbox (76.12407pt too wide) in paragraph at lines 1830--1830 []\T1/ptm/m/it/10 individual_property: Overfull \hbox (269.15215pt too wide) in paragraph at lines 1830--1830 [][]\T1/ptm/m/n/10 emod_api.demographics.PropertiesAndAttributes.IndividualProp erty[][] Underfull \hbox (badness 10000) in paragraph at lines 1830--1830 \T1/ptm/m/it/10 = Overfull \hbox (20.35487pt too wide) in paragraph at lines 1830--1830 \T1/ptm/m/it/10 None\T1/pcr/m/n/10 ) Overfull \hbox (109.22414pt too wide) in paragraph at lines 1861--1861 []\T1/ptm/m/it/10 age_distribution_flag=None\T1/ptm/m/n/10 , Overfull \hbox (94.32413pt too wide) in paragraph at lines 1861--1861 \T1/ptm/m/it/10 age_distribution1=None\T1/ptm/m/n/10 , Overfull \hbox (94.32413pt too wide) in paragraph at lines 1861--1861 \T1/ptm/m/it/10 age_distribution2=None\T1/ptm/m/n/10 , Overfull \hbox (89.32413pt too wide) in paragraph at lines 1861--1861 \T1/ptm/m/it/10 age_distribution=None\T1/ptm/m/n/10 , Overfull \hbox (18.82483pt too wide) in paragraph at lines 1861--1861 \T1/ptm/m/it/10 preva- Overfull \hbox (116.0839pt too wide) in paragraph at lines 1861--1861 \T1/ptm/m/it/10 lence_distribution_flag=None\T1/ptm/m/n/10 , Overfull \hbox (18.82483pt too wide) in paragraph at lines 1861--1861 \T1/ptm/m/it/10 preva- Overfull \hbox (101.18388pt too wide) in paragraph at lines 1861--1861 \T1/ptm/m/it/10 lence_distribution1=None\T1/ptm/m/n/10 , Overfull \hbox (18.82483pt too wide) in paragraph at lines 1861--1861 \T1/ptm/m/it/10 preva- Overfull \hbox (101.18388pt too wide) in paragraph at lines 1861--1861 \T1/ptm/m/it/10 lence_distribution2=None\T1/ptm/m/n/10 , Overfull \hbox (6.57483pt too wide) in paragraph at lines 1861--1861 \T1/ptm/m/it/10 im- Overfull \hbox (8.79494pt too wide) in paragraph at lines 1861--1861 \T1/ptm/m/it/10 mu- Overfull \hbox (109.9839pt too wide) in paragraph at lines 1861--1861 \T1/ptm/m/it/10 nity_distribution_flag=None\T1/ptm/m/n/10 , Overfull \hbox (6.57483pt too wide) in paragraph at lines 1861--1861 \T1/ptm/m/it/10 im- Overfull \hbox (8.79494pt too wide) in paragraph at lines 1861--1861 \T1/ptm/m/it/10 mu- Overfull \hbox (95.0839pt too wide) in paragraph at lines 1861--1861 \T1/ptm/m/it/10 nity_distribution1=None\T1/ptm/m/n/10 , Overfull \hbox (6.57483pt too wide) in paragraph at lines 1861--1861 \T1/ptm/m/it/10 im- Overfull \hbox (8.79494pt too wide) in paragraph at lines 1861--1861 \T1/ptm/m/it/10 mu- Overfull \hbox (95.0839pt too wide) in paragraph at lines 1861--1861 \T1/ptm/m/it/10 nity_distribution2=None\T1/ptm/m/n/10 , Overfull \hbox (109.9838pt too wide) in paragraph at lines 1861--1861 \T1/ptm/m/it/10 risk_distribution_flag=None\T1/ptm/m/n/10 , Overfull \hbox (95.08379pt too wide) in paragraph at lines 1861--1861 \T1/ptm/m/it/10 risk_distribution1=None\T1/ptm/m/n/10 , Overfull \hbox (95.08379pt too wide) in paragraph at lines 1861--1861 \T1/ptm/m/it/10 risk_distribution2=None\T1/ptm/m/n/10 , Overfull \hbox (6.57483pt too wide) in paragraph at lines 1861--1861 \T1/ptm/m/it/10 mi- Overfull \hbox (10.31496pt too wide) in paragraph at lines 1861--1861 \T1/ptm/m/it/10 gra- Overfull \hbox (169.32329pt too wide) in paragraph at lines 1861--1861 \T1/ptm/m/it/10 tion_heterogeneity_distribution_flag=None\T1/ptm/m/n/10 , Overfull \hbox (6.57483pt too wide) in paragraph at lines 1861--1861 \T1/ptm/m/it/10 mi- Overfull \hbox (10.31496pt too wide) in paragraph at lines 1861--1861 \T1/ptm/m/it/10 gra- Overfull \hbox (154.42328pt too wide) in paragraph at lines 1861--1861 \T1/ptm/m/it/10 tion_heterogeneity_distribution1=None\T1/ptm/m/n/10 , Overfull \hbox (6.57483pt too wide) in paragraph at lines 1861--1861 \T1/ptm/m/it/10 mi- Overfull \hbox (10.31496pt too wide) in paragraph at lines 1861--1861 \T1/ptm/m/it/10 gra- Overfull \hbox (154.42328pt too wide) in paragraph at lines 1861--1861 \T1/ptm/m/it/10 tion_heterogeneity_distribution2=None\T1/ptm/m/n/10 , Overfull \hbox (12.48488pt too wide) in paragraph at lines 1861--1861 \T1/ptm/m/it/10 mor- Overfull \hbox (7.13475pt too wide) in paragraph at lines 1861--1861 \T1/ptm/m/it/10 tal- Overfull \hbox (85.0839pt too wide) in paragraph at lines 1861--1861 \T1/ptm/m/it/10 ity_distribution=None\T1/ptm/m/n/10 , Overfull \hbox (9.35475pt too wide) in paragraph at lines 1861--1861 \T1/ptm/m/it/10 sus- Overfull \hbox (10.45485pt too wide) in paragraph at lines 1861--1861 \T1/ptm/m/it/10 cep- Overfull \hbox (2.13475pt too wide) in paragraph at lines 1861--1861 \T1/ptm/m/it/10 ti- Overfull \hbox (7.13475pt too wide) in paragraph at lines 1861--1861 \T1/ptm/m/it/10 bil- Overfull \hbox (88.5839pt too wide) in paragraph at lines 1861--1861 \T1/ptm/m/it/10 ity_distribution=None\T1/pcr/m/n/10 ) [22] Underfull \hbox (badness 10000) in paragraph at lines 1866--1866 []\T1/ptm/m/it/10 distribution_values: List[[][]float[][]] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 1880--1880 []\T1/ptm/m/it/10 distribution_values=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-s ult_scale_factor=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 1900--1900 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 axis_units=None\T1/ptm/m /n/10 , \T1/ptm/m/it/10 num_distribution_axes=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1900--1900 \T1/ptm/m/it/10 pop-u-la-tion_groups=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-su lt_scale_factor=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- [23] Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 []\T1/ptm/m/it/10 airport: Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 [][]\T1/ptm/m/it/10 int[][] = Overfull \hbox (4.8247pt too wide) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 tude=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Overfull \hbox (0.98447pt too wide) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 birth_rate: Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 [][]\T1/ptm/m/it/10 float[][] = Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 coun- Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 try=None\T1/ptm/m/n/10 , Overfull \hbox (9.42453pt too wide) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 growth_rate: Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 [][]\T1/ptm/m/it/10 float[][] = Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 lat-i-tude: Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 [][]\T1/ptm/m/it/10 float[][] = Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 lon-gi-tude: Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 [][]\T1/ptm/m/it/10 float[][] = Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 meta-data: Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 [][]\T1/ptm/m/it/10 dict[][] = Overfull \hbox (22.25432pt too wide) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 tial_population: Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 [][]\T1/ptm/m/it/10 int[][] = Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 sea-port: Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 [][]\T1/ptm/m/it/10 int[][] = Overfull \hbox (50.58374pt too wide) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 val_habitat_multiplier: Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 List[[][]float[][]] Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 ini- Overfull \hbox (86.9334pt too wide) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 tial_vectors_per_species=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 in-fec-tiv- Overfull \hbox (15.02396pt too wide) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 ity_multiplier: Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 [][]\T1/ptm/m/it/10 float[][] = Overfull \hbox (15.23419pt too wide) in paragraph at lines 1935--1935 \T1/ptm/m/it/10 tra_attributes: Underfull \hbox (badness 10000) in paragraph at lines 1935--1935 [][]\T1/ptm/m/it/10 dict[][] = [24] [25] Underfull \hbox (badness 10000) in paragraph at lines 2006--2007 []\T1/pcr/b/n/10 distribution \T1/ptm/m/n/10 ^^U The se-lected dis-tri-bu-tion (need to come from Underfull \hbox (badness 10000) in paragraph at lines 2026--2026 []\T1/ptm/m/it/10 filename\T1/ptm/m/n/10 , \T1/ptm/m/it/10 dis-tri-bu-tion\T1/p tm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2027--2028 \T1/ptm/m/n/10 Set the \T1/pcr/m/n/10 ImmunityDistributionFlag\T1/ptm/m/n/10 , \T1/pcr/m/n/10 ImmunityDistribution1 \T1/ptm/m/n/10 and Underfull \hbox (badness 10000) in paragraph at lines 2054--2054 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2054--2054 \T1/ptm/m/it/10 fn\T1/ptm/m/n/10 , [26] Underfull \hbox (badness 10000) in paragraph at lines 2124--2124 []\T1/ptm/m/it/10 cb\T1/ptm/m/n/10 , Overfull \hbox (28.70406pt too wide) in paragraph at lines 2124--2124 \T1/ptm/m/it/10 use_existing=False\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 2150--2150 []\T1/ptm/m/it/10 cb\T1/ptm/m/n/10 , Overfull \hbox (34.70406pt too wide) in paragraph at lines 2150--2150 \T1/ptm/m/it/10 use_existing=False\T1/pcr/m/n/10 ) [27] Underfull \hbox (badness 10000) in paragraph at lines 2222--2222 []\T1/ptm/m/it/10 point\T1/ptm/m/n/10 , Overfull \hbox (37.41425pt too wide) in paragraph at lines 2222--2222 \T1/ptm/m/it/10 grid_id_2_cell_id\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2263--2263 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Event_Trigger\T1/ptm/m/n /10 , Overfull \hbox (73.22345pt too wide) in paragraph at lines 2263--2263 \T1/ptm/m/it/10 Node_Selection_Type=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 DISTANCE_ ONLY\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (57.50374pt too wide) in paragraph at lines 2263--2263 \T1/ptm/m/it/10 Max_Distance_To_Other_Nodes_Km=- [28] Underfull \hbox (badness 10000) in paragraph at lines 2298--2298 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 In-ter-ven- Underfull \hbox (badness 10000) in paragraph at lines 2341--2342 []\T1/pcr/b/n/10 but without the distribution, which is inferred. E.g., Underfull \hbox (badness 10000) in paragraph at lines 2362--2362 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Event_Or_Config=\TS1/ptm /m/it/10 '\T1/ptm/m/it/10 Event\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/ 10 Con-fig=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2362--2362 \T1/ptm/m/it/10 Event=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 NoTrigger\TS1/ptm/m/it/ 10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Ten-dency=1.0\T1/ptm/m/n/10 , \T1/ptm/m/it /10 Sin-gle_Use=True\T1/ptm/m/n/10 , [29] Underfull \hbox (badness 10000) in paragraph at lines 2406--2406 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Trig-gers\T1/ptm/m/n/10 , \T1/ptm/m/it/10 In-ter-ven-tions\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Prop- Underfull \hbox (badness 10000) in paragraph at lines 2406--2406 \T1/ptm/m/it/10 erty_Restrictions=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 De-mo- Underfull \hbox (badness 10000) in paragraph at lines 2406--2406 \T1/ptm/m/it/10 graphic_Coverage=1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar-get_Ag e_Min=0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar- Underfull \hbox (badness 10000) in paragraph at lines 2406--2406 \T1/ptm/m/it/10 get_Age_Max=45625\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar-get_Gende r=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 All\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/p tm/m/it/10 Tar- Underfull \hbox (badness 10000) in paragraph at lines 2406--2406 \T1/ptm/m/it/10 get_Residents_Only=1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Duration=- 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Black- Underfull \hbox (badness 10000) in paragraph at lines 2406--2406 \T1/ptm/m/it/10 out_Event_Trigger=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Blackout_Ev ent_Trigger\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Black- Underfull \hbox (badness 10000) in paragraph at lines 2406--2406 \T1/ptm/m/it/10 out_Period=0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Black-out_On_First _Occurrence=0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2468--2468 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar-get_Property_Key\T1/ ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2468--2468 \T1/ptm/m/it/10 Tar-get_Property_Value\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2468--2468 \T1/ptm/m/it/10 New_Property_Value=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2468--2468 \T1/ptm/m/it/10 Daily_Probability=1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Max-i- Underfull \hbox (badness 10000) in paragraph at lines 2468--2468 \T1/ptm/m/it/10 In-ter-ven-tion_Name=\TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2468--2468 \T1/ptm/m/it/10 Event_Trigger_Distributed=\TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , [30] Underfull \hbox (badness 10000) in paragraph at lines 2488--2488 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Start_Day\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Node- Underfull \hbox (badness 10000) in paragraph at lines 2488--2488 \T1/ptm/m/it/10 set_Config=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Num- Underfull \hbox (badness 10000) in paragraph at lines 2488--2488 \T1/ptm/m/it/10 ber_Repetitions=1\T1/ptm/m/n/10 , Overfull \hbox (11.65335pt too wide) in paragraph at lines 2488--2488 \T1/ptm/m/it/10 Timesteps_Between_Repetitions=- Underfull \hbox (badness 10000) in paragraph at lines 2488--2488 \T1/ptm/m/it/10 1\T1/ptm/m/n/10 , Overfull \hbox (53.26375pt too wide) in paragraph at lines 2488--2488 \T1/ptm/m/it/10 Event_Name=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Scheduled_Campaign _Event\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2488--2488 \T1/ptm/m/it/10 Prop-erty_Restrictions=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2488--2488 \T1/ptm/m/it/10 De-mo-graphic_Coverage=1.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2488--2488 \T1/ptm/m/it/10 Tar-get_Age_Min=0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar- Underfull \hbox (badness 10000) in paragraph at lines 2488--2488 \T1/ptm/m/it/10 get_Age_Max=45625\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar- Underfull \hbox (badness 10000) in paragraph at lines 2488--2488 \T1/ptm/m/it/10 get_Gender=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 All\TS1/ptm/m/it/1 0 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 In-ter-ven- Underfull \hbox (badness 10000) in paragraph at lines 2548--2548 \T1/ptm/m/it/10 Trig-gers\T1/ptm/m/n/10 , \T1/ptm/m/it/10 In-ter-ven-tion_List\ T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2548--2548 \T1/ptm/m/it/10 Node-set_Config=None\T1/ptm/m/n/10 , Overfull \hbox (17.59343pt too wide) in paragraph at lines 2548--2548 \T1/ptm/m/it/10 Node_Property_Restrictions=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2548--2548 \T1/ptm/m/it/10 Prop-erty_Restrictions=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2548--2548 \T1/ptm/m/it/10 Num-ber_Repetitions=1\T1/ptm/m/n/10 , Overfull \hbox (11.65335pt too wide) in paragraph at lines 2548--2548 \T1/ptm/m/it/10 Timesteps_Between_Repetitions=- Underfull \hbox (badness 10000) in paragraph at lines 2548--2548 \T1/ptm/m/it/10 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 De-mo- Underfull \hbox (badness 10000) in paragraph at lines 2548--2548 \T1/ptm/m/it/10 graphic_Coverage=1.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2548--2548 \T1/ptm/m/it/10 Tar-get_Age_Min=0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar- Underfull \hbox (badness 10000) in paragraph at lines 2548--2548 \T1/ptm/m/it/10 get_Age_Max=45625\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2548--2548 \T1/ptm/m/it/10 Tar-get_Gender=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 All\TS1/ptm/m/ it/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar- Underfull \hbox (badness 10000) in paragraph at lines 2548--2548 \T1/ptm/m/it/10 get_Residents_Only=1\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2548--2548 \T1/ptm/m/it/10 Duration=- 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Black- Overfull \hbox (59.96321pt too wide) in paragraph at lines 2548--2548 \T1/ptm/m/it/10 out_Event_Trigger=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Blackout_Ev ent_Trigger\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2548--2548 \T1/ptm/m/it/10 Black-out_Period=0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Black- Underfull \hbox (badness 10000) in paragraph at lines 2548--2548 \T1/ptm/m/it/10 out_On_First_Occurrence=0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2548--2548 \T1/ptm/m/it/10 Dis-qual-i-fy- Underfull \hbox (badness 10000) in paragraph at lines 2548--2548 \T1/ptm/m/it/10 ing_Properties=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 De- [31] [32] Underfull \hbox (badness 10000) in paragraph at lines 2629--2629 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Base_Sensitivity=1\T1/pt m/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2629--2629 \T1/ptm/m/it/10 Base_Specificity=1\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2629--2629 \T1/ptm/m/it/10 Days_To_Diagnosis=0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2629--2629 \T1/ptm/m/it/10 Treat-ment_Fraction=1\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2658--2658 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2658--2658 \T1/ptm/m/it/10 trig-ger\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-lay\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2658--2658 \T1/ptm/m/it/10 in-ter-ven-tion\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2658--2658 \T1/ptm/m/it/10 ip_targeting=[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2672--2673 []\T1/pcr/b/n/10 without the distribution, which is inferred. E.g., { Underfull \hbox (badness 10000) in paragraph at lines 2695--2695 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2695--2695 \T1/ptm/m/it/10 new_ip_key\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2695--2695 \T1/ptm/m/it/10 new_ip_value\T1/ptm/m/n/10 , Overfull \hbox (25.72469pt too wide) in paragraph at lines 2695--2695 \T1/ptm/m/it/10 change_age_in_days\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2695--2695 \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 2695--2695 \T1/ptm/m/it/10 vert_in_days\T1/ptm/m/n/10 , Overfull \hbox (8.6443pt too wide) in paragraph at lines 2695--2695 \T1/ptm/m/it/10 ip_targeting_key\T1/ptm/m/n/10 , Overfull \hbox (17.38419pt too wide) in paragraph at lines 2695--2695 \T1/ptm/m/it/10 ip_targeting_value\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2695--2695 \T1/ptm/m/it/10 cov-er- [33] Underfull \hbox (badness 10000) in paragraph at lines 2754--2754 \T1/ptm/m/it/10 pro-file=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 CONST\TS1/ptm/m/it/1 0 '\T1/ptm/m/n/10 , ! LaTeX Error: Too deeply nested. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.2763 ...{CONST(ANT)}] \leavevmode\begin{itemize} [34] Underfull \hbox (badness 10000) in paragraph at lines 2825--2825 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day=1\T1/ptm/m/n/1 0 , Underfull \hbox (badness 10000) in paragraph at lines 2825--2825 \T1/ptm/m/it/10 new_infectivity=1.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2825--2825 \T1/ptm/m/it/10 pro-file=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 CONST\TS1/ptm/m/it/1 0 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2825--2825 \T1/ptm/m/it/10 node_ids=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2825--2825 \T1/ptm/m/it/10 re-cur-ring=True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2833--2833 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2844--2844 \T1/ptm/m/it/10 age=0.01\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ig-nore_immunity=None\ T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2853--2853 []\T1/ptm/m/it/10 campaign_builder\T1/ptm/m/n/10 , \T1/ptm/m/it/10 timestep\T1/ ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2887--2887 \T1/ptm/m/it/10 ef-fi-cacy=1.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2887--2887 \T1/ptm/m/it/10 sv_name=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Vaccine\TS1/ptm/m/it/ 10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2887--2887 \T1/ptm/m/it/10 wan-ing_duration=100\T1/ptm/m/n/10 , [35] Underfull \hbox (badness 10000) in paragraph at lines 2908--2908 []\T1/ptm/m/it/10 timestep\T1/ptm/m/n/10 , \T1/ptm/m/it/10 file- Underfull \hbox (badness 10000) in paragraph at lines 2925--2925 []\T1/ptm/m/it/10 schema_path\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ini-tial=1.0\T1/p tm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2925--2925 \T1/ptm/m/it/10 box_duration=365\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de- [36] Underfull \hbox (badness 5548) in paragraph at lines 3032--3035 []\T1/ptm/m/n/10 EMOD/DTK for-mat mi-gra-tion files (and as-so-ci-ated meta-dat a files) can be writ-ten with mi-gra- [37] Underfull \hbox (badness 10000) in paragraph at lines 3298--3298 \T1/ptm/m/it/10 num_nodes=100\T1/ptm/m/n/10 , \T1/ptm/m/it/10 mig_factor=1.0\T1 /ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3298--3298 \T1/ptm/m/it/10 frac_rural=0.3\T1/ptm/m/n/10 , \T1/ptm/m/it/10 id_ref=\TS1/ptm/ m/it/10 '\T1/ptm/m/it/10 from_params\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm/ m/it/10 mi- [38] Overfull \hbox (68.98433pt too wide) in paragraph at lines 3309--3309 []\T1/ptm/m/it/10 demographics_file_path: Underfull \hbox (badness 10000) in paragraph at lines 3309--3309 [][]\T1/ptm/m/it/10 str[][]\T1/ptm/m/n/10 , Overfull \hbox (2.42482pt too wide) in paragraph at lines 3309--3309 \T1/ptm/m/it/10 params: Underfull \hbox (badness 10000) in paragraph at lines 3309--3309 [][]\T1/ptm/m/it/10 str[][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3309--3309 \T1/ptm/m/it/10 id_ref: Underfull \hbox (badness 10000) in paragraph at lines 3309--3309 [][]\T1/ptm/m/it/10 str[][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3309--3309 \T1/ptm/m/it/10 mi-gra- Overfull \hbox (24.21457pt too wide) in paragraph at lines 3309--3309 \T1/ptm/m/it/10 tion_type=1\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 3309--3309 \OMS/cmsy/m/n/10 !$ Overfull \hbox (135.19371pt too wide) in paragraph at lines 3309--3309 [][]\T1/ptm/m/it/10 emod_api.migration.migration.Migration[][] Overfull \hbox (2.15437pt too wide) in paragraph at lines 3337--3337 []\T1/ptm/m/it/10 demographics_file_path\T1/ptm/m/n/10 , [39] Overfull \hbox (24.70302pt too wide) in paragraph at lines 3391--3391 []\T1/ptm/m/it/10 path_to_binary\T1/ptm/m/n/10 , \T1/ptm/m/it/10 path_to_write_ schema=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 schema.json\TS1/ptm/m/it/10 '\T1/pcr/m /n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 3412--3412 []\T1/ptm/m/it/10 input_serpop_path\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3412--3412 \T1/ptm/m/it/10 mod_fn=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3433--3433 []\T1/ptm/m/it/10 file: [40] [41] Underfull \hbox (badness 10000) in paragraph at lines 3559--3559 []\T1/ptm/m/it/10 name: [][]str[][]\T1/ptm/m/n/10 , \T1/ptm/m/it/10 han-dle\T1/ ptm/m/n/10 , \T1/ptm/m/it/10 cur- Underfull \hbox (badness 10000) in paragraph at lines 3594--3594 []\T1/ptm/m/it/10 handle\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cur- [42] Underfull \hbox (badness 7256) in paragraph at lines 3723--3723 \T1/ptm/m/it/10 True, \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 date\TS1/ptm/m/it/10 '\ T1/ptm/m/it/10 : \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Thu Nov 18 Underfull \hbox (badness 5050) in paragraph at lines 3723--3723 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 tool\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 : \TS1/ ptm/m/it/10 '\T1/ptm/m/it/10 dtk-File-Tools.py\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 , \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 ver- [43] [44] Underfull \hbox (badness 10000) in paragraph at lines 3957--3957 \T1/ptm/m/it/10 List[[][]int[][]] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 data: Underfull \hbox (badness 10000) in paragraph at lines 3957--3957 \T1/ptm/m/it/10 numpy.array = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start: [45] [46] [47] [48] [49] [50] Chapter 4. [51] [52] Overfull \hbox (66.6225pt too wide) in paragraph at lines 4496--4497 []\T1/pcr/m/n/10 emod_api.config.default_from_schema_no_validation\T1/ptm/m/n/1 0 , Overfull \hbox (36.6225pt too wide) in paragraph at lines 4497--4498 []\T1/pcr/m/n/10 emod_api.config.dtk_post_process_adhocevents\T1/ptm/m/n/10 , Overfull \hbox (30.6225pt too wide) in paragraph at lines 4498--4499 []\T1/pcr/m/n/10 emod_api.config.dtk_pre_process_adhocevents\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4499--4500 []\T1/pcr/m/n/10 emod_api.config.dtk_pre_process_w5ml\T1/ptm/m/n/10 , Overfull \hbox (12.6225pt too wide) in paragraph at lines 4507--4508 []\T1/pcr/m/n/10 emod_api.demographics.demographics_utils\T1/ptm/m/n/10 , Overfull \hbox (30.6225pt too wide) in paragraph at lines 4508--4509 []\T1/pcr/m/n/10 emod_api.demographics.DemographicsGenerator\T1/ptm/m/n/10 , Overfull \hbox (72.6225pt too wide) in paragraph at lines 4509--4510 []\T1/pcr/m/n/10 emod_api.demographics.DemographicsInputDataParsers\T1/ptm/m/n/ 10 , Overfull \hbox (30.6225pt too wide) in paragraph at lines 4510--4511 []\T1/pcr/m/n/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 , Overfull \hbox (6.6225pt too wide) in paragraph at lines 4511--4512 []\T1/pcr/m/n/10 emod_api.demographics.grid_construction\T1/ptm/m/n/10 , Overfull \hbox (42.6225pt too wide) in paragraph at lines 4513--4514 []\T1/pcr/m/n/10 emod_api.demographics.PreDefinedDistributions\T1/ptm/m/n/10 , Overfull \hbox (42.6225pt too wide) in paragraph at lines 4514--4515 []\T1/pcr/m/n/10 emod_api.demographics.PropertiesAndAttributes\T1/ptm/m/n/10 , Overfull \hbox (0.6225pt too wide) in paragraph at lines 4518--4519 []\T1/pcr/m/n/10 emod_api.interventions.import_pressure\T1/ptm/m/n/10 , Overfull \hbox (0.6225pt too wide) in paragraph at lines 4519--4520 []\T1/pcr/m/n/10 emod_api.interventions.node_multiplier\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4521--4522 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opertiesAndAttributes.IndividualProperties Overfull \hbox (148.70953pt too wide) in paragraph at lines 11--13 []\T1/pcr/m/n/10 add_parameter() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demog raphics.PropertiesAndAttributes.IndividualProperties Overfull \hbox (61.87129pt too wide) in paragraph at lines 13--15 []\T1/pcr/m/n/10 add_parameter() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demog raphics.Updateable.Updateable Underfull \hbox (badness 10000) in paragraph at lines 15--17 []\T1/pcr/m/n/10 AddAgeDependentTransmission() Overfull \hbox (34.06111pt too wide) in paragraph at lines 15--17 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 17--19 []\T1/pcr/m/n/10 AddIndividualPropertyAndHINT() Overfull \hbox (34.06111pt too wide) in paragraph at lines 17--19 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 19--21 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[]\T1/pcr/m/n/10 as_dictionary() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.chann elreports.channels.Channel Overfull \hbox (37.71117pt too wide) in paragraph at lines 46--48 []\T1/pcr/m/n/10 as_dictionary() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.chann elreports.channels.Header Underfull \hbox (badness 10000) in paragraph at lines 50--52 []\T1/pcr/m/n/10 Author() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.mi gration.Migration Underfull \hbox (badness 10000) in paragraph at lines 59--61 []\T1/pcr/m/n/10 BaseInputFile \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 59--61 \T1/ptm/m/it/10 emod_api.demographics.BaseInputFile\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 61--62 []\T1/pcr/m/n/10 basicNode() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 62--64 []\T1/pcr/m/n/10 birth_rate() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demograp hics.Node.Node Underfull 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in paragraph at lines 122--124 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.weather.weather.Metadata prop- Underfull \hbox (badness 10000) in paragraph at lines 124--126 []\T1/pcr/m/n/10 datavalue_count() Underfull \hbox (badness 10000) in paragraph at lines 124--126 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.weather.weather.Weather prop- Overfull \hbox (20.22127pt too wide) in paragraph at lines 126--128 []\T1/pcr/m/n/10 DatavalueCount() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migr ation.migration.Layer Overfull \hbox (37.30118pt too wide) in paragraph at lines 128--130 []\T1/pcr/m/n/10 DatavalueCount() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migr ation.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 130--132 []\T1/pcr/m/n/10 date() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serialization. dtkFileTools.DtkFile Overfull \hbox (19.30118pt too wide) in paragraph at lines 132--134 []\T1/pcr/m/n/10 DateCreated() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migrati on.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 134--136 []\T1/pcr/m/n/10 default_population Underfull \hbox (badness 10000) in paragraph at lines 134--136 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Node.Node at- Underfull \hbox (badness 7291) in paragraph at lines 136--138 []\T1/pcr/m/n/10 DefaultSusceptibilityDistribution() \T1/ptm/m/n/10 (\T1/ptm/m/ it/10 in Overfull \hbox (46.96086pt too wide) in paragraph at lines 136--138 \T1/ptm/m/it/10 mod-ule emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/ 10 ), Underfull \hbox (badness 10000) in paragraph at lines 138--140 []\T1/pcr/m/n/10 DelayedIntervention() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 140--142 []\T1/pcr/m/n/10 Demographics \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 140--142 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 142--144 []\T1/pcr/m/n/10 DemographicsGenerator \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Overfull \hbox (17.1711pt too wide) in paragraph at lines 142--144 \T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 144--146 []\T1/pcr/m/n/10 DemographicsOverlay \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 144--146 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 146--148 []\T1/pcr/m/n/10 DemographicsType \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Overfull \hbox (17.1711pt too wide) in paragraph at lines 146--148 \T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 148--150 []\T1/pcr/m/n/10 do_mapping_from_events() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule Overfull \hbox (4.2412pt too wide) in 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paragraph at lines 176--178 \T1/ptm/m/it/10 emod_api.demographics.DemographicsInputDataParsers\T1/ptm/m/n/1 0 ), Underfull \hbox (badness 10000) in paragraph at lines 181--183 []\T1/pcr/m/n/10 EllZeeFour \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Overfull \hbox (64.1225pt too wide) in paragraph at lines 195--196 []\T1/pcr/m/n/10 emod_api.config.default_from_schema_no_validation Overfull \hbox (34.1225pt too wide) in paragraph at lines 197--198 []\T1/pcr/m/n/10 emod_api.config.dtk_post_process_adhocevents Overfull \hbox (28.1225pt too wide) in paragraph at lines 199--200 []\T1/pcr/m/n/10 emod_api.config.dtk_pre_process_adhocevents Overfull \hbox (10.1225pt too wide) in paragraph at lines 217--218 []\T1/pcr/m/n/10 emod_api.demographics.demographics_utils Overfull \hbox (28.1225pt too wide) in paragraph at lines 219--220 []\T1/pcr/m/n/10 emod_api.demographics.DemographicsGenerator Overfull \hbox (70.1225pt too wide) in paragraph at lines 221--222 []\T1/pcr/m/n/10 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paragraph at lines 289--291 []\T1/pcr/m/n/10 examine_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 299--301 []\T1/pcr/m/n/10 fill_nodes_legacy() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (46.65079pt too wide) in paragraph at lines 299--301 \T1/ptm/m/it/10 emod_api.demographics.DemographicsInputDataParsers\T1/ptm/m/n/1 0 ), Overfull \hbox (4.62106pt too wide) in paragraph at lines 301--303 []\T1/pcr/m/n/10 finalize() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.schema_to_ class.ReadOnlyDict Overfull \hbox (36.30013pt too wide) in paragraph at lines 303--305 []\T1/pcr/m/n/10 find() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule emod_api.ser ialization.SerializedPopulation\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 305--307 []\T1/pcr/m/n/10 flattenConfig() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (81.59949pt too wide) in paragraph at lines 307--309 []\T1/pcr/m/n/10 flush() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serialization .SerializedPopulation.SerializedPopulation Underfull \hbox (badness 10000) in paragraph at lines 311--313 []\T1/pcr/m/n/10 from_csv() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 311--313 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 313--314 []\T1/pcr/m/n/10 from_csv() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 314--316 []\T1/pcr/m/n/10 from_data() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demograph ics.Node.Node Underfull \hbox (badness 10000) in paragraph at lines 316--318 []\T1/pcr/m/n/10 from_dataframe() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (17.1711pt too wide) in paragraph at lines 316--318 \T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/ptm/m/n/10 ), Overfull \hbox (16.1225pt too wide) in paragraph at lines 320--322 []\T1/pcr/m/n/10 from_demog_and_param_gravity_webservice() Overfull \hbox (122.1895pt too wide) in paragraph at lines 322--324 []\T1/pcr/m/n/10 from_dict() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demograph ics.PropertiesAndAttributes.IndividualAttributes Overfull \hbox (188.8387pt too wide) in paragraph at lines 324--326 []\T1/pcr/m/n/10 from_dict() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demograph ics.PropertiesAndAttributes.IndividualAttributes.AgeDistribution Overfull \hbox (211.16812pt too wide) in paragraph at lines 326--328 []\T1/pcr/m/n/10 from_dict() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demograph ics.PropertiesAndAttributes.IndividualAttributes.MortalityDistribution Overfull \hbox (102.18979pt too wide) in paragraph at lines 328--330 []\T1/pcr/m/n/10 from_dict() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demograph ics.PropertiesAndAttributes.NodeAttributes Underfull \hbox (badness 10000) in paragraph at lines 330--332 []\T1/pcr/m/n/10 from_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.weather.w eather.Metadata Underfull \hbox (badness 10000) in paragraph at lines 332--334 []\T1/pcr/m/n/10 from_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 332--334 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 334--336 []\T1/pcr/m/n/10 from_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (17.1711pt too wide) in paragraph at lines 334--336 \T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 336--337 []\T1/pcr/m/n/10 from_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 337--339 []\T1/pcr/m/n/10 from_params() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 337--339 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 339--340 []\T1/pcr/m/n/10 from_params() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 340--342 []\T1/pcr/m/n/10 from_pop_csv() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 340--342 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 342--344 []\T1/pcr/m/n/10 from_template_node() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 342--344 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 344--346 []\T1/pcr/m/n/10 FullRisk() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (15.62103pt too wide) in paragraph at lines 344--346 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Overfull \hbox (37.30118pt too wide) in paragraph at lines 349--351 []\T1/pcr/m/n/10 GenderDataType() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migr ation.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 351--353 []\T1/pcr/m/n/10 generate_demographics() Overfull \hbox (115.97037pt too wide) in paragraph at lines 351--353 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator.Dem ographicsGenerator Overfull \hbox (80.97084pt too wide) in paragraph at lines 353--355 []\T1/pcr/m/n/10 generate_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demog raphics.BaseInputFile.BaseInputFile Overfull \hbox (85.96114pt too wide) in paragraph at lines 355--357 []\T1/pcr/m/n/10 generate_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demog raphics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 357--359 []\T1/pcr/m/n/10 generate_headers() Overfull \hbox (29.07082pt too wide) in paragraph at lines 357--359 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.BaseInputFile.BaseInputFi le Underfull \hbox (badness 10000) in paragraph at lines 359--361 []\T1/pcr/m/n/10 generate_metadata() Overfull \hbox (115.97037pt too wide) in paragraph at lines 359--361 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator.Dem ographicsGenerator Overfull \hbox (173.87039pt too wide) in paragraph at lines 361--363 []\T1/pcr/m/n/10 generate_nodes() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demo graphics.DemographicsGenerator.DemographicsGenerator Underfull \hbox (badness 10000) in paragraph at lines 364--366 []\T1/pcr/m/n/10 get_bbox() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 364--366 \T1/ptm/m/it/10 emod_api.demographics.grid_construction\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 366--368 []\T1/pcr/m/n/10 get_class_with_defaults() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in m od-ule Overfull \hbox (62.64088pt too wide) in paragraph at lines 368--370 \T1/ptm/m/it/10 mod-ule emod_api.config.default_from_schema_no_validation\T1/pt m/m/n/10 ), Overfull \hbox (45.42091pt too wide) in paragraph at lines 370--372 \T1/ptm/m/it/10 ule emod_api.config.default_from_schema_no_validation\T1/ptm/m/ n/10 ), [58] Underfull \hbox (badness 10000) in paragraph at lines 375--377 []\T1/pcr/m/n/10 get_fert_dist() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (15.62103pt too wide) in paragraph at lines 375--377 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 377--379 []\T1/pcr/m/n/10 get_grid_cell_id() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 377--379 \T1/ptm/m/it/10 emod_api.demographics.grid_construction\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 379--381 []\T1/pcr/m/n/10 get_next_individual_suid() Overfull \hbox (77.69946pt too wide) in paragraph at lines 379--381 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[]\T1/pcr/m/n/10 get_waning_from_params() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 399--401 []\T1/pcr/m/n/10 get_xpix_ypix() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (26.83089pt too wide) in paragraph at lines 405--407 []\T1/pcr/m/n/10 header() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channelrepor ts.channels.ChannelReport Underfull \hbox (badness 10000) in paragraph at lines 416--418 []\T1/pcr/m/n/10 id() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.spatialreports.s patial.SpatialNode Underfull \hbox (badness 7308) in paragraph at lines 418--419 []\T1/pcr/m/n/10 id() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.weather.weather. WeatherNode prop- Overfull \hbox (6.84114pt too wide) in paragraph at lines 419--421 []\T1/pcr/m/n/10 id_reference() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.weathe r.weather.Metadata Overfull \hbox (1.47115pt too wide) in paragraph at lines 421--423 []\T1/pcr/m/n/10 id_reference() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.weathe r.weather.Weather Underfull \hbox (badness 10000) in paragraph at lines 423--425 []\T1/pcr/m/n/10 IDREF_GRUMP1DEGREE Underfull \hbox (badness 10000) in paragraph at lines 423--425 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 425--427 []\T1/pcr/m/n/10 IDREF_GRUMP2PT5ARCMIN Underfull \hbox (badness 10000) in paragraph at lines 425--427 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 427--429 []\T1/pcr/m/n/10 IDREF_GRUMP30ARCSEC Underfull \hbox (badness 10000) in paragraph at lines 427--429 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.migration.Migration Overfull \hbox (13.30058pt too wide) in paragraph at lines 429--431 []\T1/pcr/m/n/10 IDREF_LEGACY \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migratio n.migration.Migration Overfull \hbox (19.30118pt too wide) in paragraph at lines 431--433 []\T1/pcr/m/n/10 IdReference() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migrati on.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 433--435 []\T1/pcr/m/n/10 IndividualAttributes \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Overfull \hbox (13.93057pt too wide) in paragraph at lines 433--435 \T1/ptm/m/it/10 emod_api.demographics.PropertiesAndAttributes\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 435--437 []\T1/pcr/m/n/10 IndividualAttributes.AgeDistribution Overfull \hbox (48.84009pt too wide) in paragraph at lines 435--437 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in emod_api.demographics.PropertiesAndAtt ributes\T1/ptm/m/n/10 ), Overfull \hbox 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(\T1/ptm/m/it/10 class in Overfull \hbox (13.93057pt too wide) in paragraph at lines 443--445 \T1/ptm/m/it/10 emod_api.demographics.PropertiesAndAttributes\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 445--447 []\T1/pcr/m/n/10 infer_natural_mortality() Overfull \hbox (34.06111pt too wide) in paragraph at lines 445--447 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 447--449 []\T1/pcr/m/n/10 init_resolution_from_file() Underfull \hbox (badness 10000) in paragraph at lines 447--449 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Node.Node class Underfull \hbox (badness 10000) in paragraph at lines 449--451 []\T1/pcr/m/n/10 InitAgeUniform() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (15.62103pt too wide) in paragraph at lines 449--451 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 451--453 []\T1/pcr/m/n/10 InitPrevUniform() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (15.62103pt too wide) in paragraph at lines 451--453 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 453--455 []\T1/pcr/m/n/10 InitRiskExponential() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-u le Overfull \hbox (15.62103pt too wide) in paragraph at lines 453--455 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 455--457 []\T1/pcr/m/n/10 InitRiskLogNormal() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (15.62103pt too wide) in paragraph at lines 455--457 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), [59] Underfull \hbox (badness 10000) in paragraph at lines 457--459 []\T1/pcr/m/n/10 InitRiskUniform() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (15.62103pt too wide) in paragraph at lines 457--459 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 459--461 []\T1/pcr/m/n/10 InitSusceptConstant() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-u le Overfull \hbox (15.62103pt too wide) in paragraph at lines 459--461 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 461--463 []\T1/pcr/m/n/10 InterpolationType() Underfull \hbox (badness 10000) in paragraph at lines 461--463 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.migration.Migration Overfull \hbox (20.8303pt too wide) in paragraph at lines 463--465 []\T1/pcr/m/n/10 interval() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.spatialrep orts.spatial.SpatialReport Overfull \hbox (13.30058pt too wide) in paragraph at lines 465--467 []\T1/pcr/m/n/10 INTERVENTION \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migratio n.migration.Migration Underfull \hbox 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lines 493--495 []\T1/pcr/m/n/10 make_config_from_poi_and_schema() \T1/ptm/m/n/10 (\T1/ptm/m/it /10 in Overfull \hbox (3.35153pt too wide) in paragraph at lines 493--495 \T1/ptm/m/it/10 mod-ule emod_api.config.from_poi_and_binary\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 495--496 []\T1/pcr/m/n/10 MALE \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.migrat ion.Migration at- Underfull \hbox (badness 10000) in paragraph at lines 499--500 []\T1/pcr/m/n/10 metadata() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.weather.we ather.Weather Overfull \hbox (31.30118pt too wide) in paragraph at lines 501--503 []\T1/pcr/m/n/10 MigrationType() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migra tion.migration.Migration Overfull \hbox (2.6225pt too wide) in paragraph at lines 509--510 []| \T1/pcr/m/n/10 emod_api.config.default_from_schema\T1/ptm/m/n/10 , Overfull \hbox (86.6225pt too wide) in paragraph at lines 510--511 []| \T1/pcr/m/n/10 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Underfull \hbox (badness 10000) in paragraph at lines 669--671 []\T1/pcr/m/n/10 REGIONAL \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.mi gration.Migration Overfull \hbox (56.83089pt too wide) in paragraph at lines 671--673 []\T1/pcr/m/n/10 report_type() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channel reports.channels.ChannelReport Overfull \hbox (25.71117pt too wide) in paragraph at lines 673--675 []\T1/pcr/m/n/10 report_type() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channel reports.channels.Header Overfull \hbox (74.83089pt too wide) in paragraph at lines 675--677 []\T1/pcr/m/n/10 report_version() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.chan nelreports.channels.ChannelReport Overfull \hbox (43.71117pt too wide) in paragraph at lines 677--679 []\T1/pcr/m/n/10 report_version() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.chan nelreports.channels.Header Overfull \hbox (4.77174pt too wide) in paragraph at lines 679--681 []\T1/pcr/m/n/10 res_in_degrees \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demogr aphics.Node.Node Underfull \hbox (badness 10000) in paragraph at lines 686--688 []\T1/pcr/m/n/10 SAME_FOR_BOTH_GENDERS Underfull \hbox (badness 10000) in paragraph at lines 686--688 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 689--691 []\T1/pcr/m/n/10 ScheduledCampaignEvent() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 691--693 []\T1/pcr/m/n/10 schema_to_config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 691--693 \T1/ptm/m/it/10 emod_api.config.from_poi_and_binary\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 693--695 []\T1/pcr/m/n/10 schema_to_config_subnode() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (31.30106pt too wide) in paragraph at lines 693--695 \T1/ptm/m/it/10 emod_api.config.default_from_schema_no_validation\T1/ptm/m/n/10 ), 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graphics.DemographicsGenerator.DemographicsGenerator [62] Underfull \hbox (badness 10000) in paragraph at lines 714--716 []\T1/pcr/m/n/10 set_risk_mod() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 714--716 \T1/ptm/m/it/10 emod_api.demographics.demographics_utils\T1/ptm/m/n/10 ), Overfull \hbox (16.62106pt too wide) in paragraph at lines 716--718 []\T1/pcr/m/n/10 set_schema() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.schema_t o_class.ReadOnlyDict Underfull \hbox (badness 10000) in paragraph at lines 719--721 []\T1/pcr/m/n/10 set_schema() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 719--721 \T1/ptm/m/it/10 emod_api.config.from_poi_and_binary\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 721--723 []\T1/pcr/m/n/10 set_static_demographics() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in m od-ule Underfull \hbox (badness 10000) in paragraph at lines 721--723 \T1/ptm/m/it/10 emod_api.demographics.demographics_utils\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 723--725 []\T1/pcr/m/n/10 SetAgeDistribution() Overfull \hbox (34.06111pt too wide) in paragraph at lines 723--725 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Overfull \hbox (79.96114pt too wide) in paragraph at lines 725--727 []\T1/pcr/m/n/10 SetBirthRate() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demogr aphics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 727--729 []\T1/pcr/m/n/10 SetConstantRisk() Overfull \hbox (34.06111pt too wide) in paragraph at lines 727--729 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 729--731 []\T1/pcr/m/n/10 SetConstantSusceptibility() Overfull \hbox (34.06111pt too wide) in paragraph at lines 729--731 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull 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emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 739--741 []\T1/pcr/m/n/10 SetDefaultProperties() Overfull \hbox (34.06111pt too wide) in paragraph at lines 739--741 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 741--743 []\T1/pcr/m/n/10 SetDefaultPropertiesFertMort() Overfull \hbox (34.06111pt too wide) in paragraph at lines 741--743 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Overfull \hbox (34.1225pt too wide) in paragraph at lines 743--745 []\T1/pcr/m/n/10 SetEquilibriumAgeDistFromBirthAndMortRates() Overfull \hbox (34.06111pt too wide) in paragraph at lines 743--745 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 745--747 []\T1/pcr/m/n/10 SetHeteroRiskExponDist() Overfull \hbox (34.06111pt too wide) in paragraph at lines 745--747 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 747--749 []\T1/pcr/m/n/10 SetHeteroRiskLognormalDist() Overfull \hbox (34.06111pt too wide) in paragraph at lines 747--749 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 749--751 []\T1/pcr/m/n/10 SetHeteroRiskUniformDist() Overfull \hbox (34.06111pt too wide) in paragraph at lines 749--751 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 751--753 []\T1/pcr/m/n/10 SetIndividualAttributesWithFertMort() Overfull \hbox (34.06111pt too wide) in paragraph at lines 751--753 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 753--755 []\T1/pcr/m/n/10 SetInitialAgeExponential() Overfull \hbox (34.06111pt too wide) in paragraph at lines 753--755 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 755--757 []\T1/pcr/m/n/10 SetInitialAgeLikeSubSaharanAfrica() Overfull \hbox (34.06111pt too wide) in paragraph at lines 755--757 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 757--759 []\T1/pcr/m/n/10 SetInitPrevFromUniformDraw() Overfull \hbox (34.06111pt too wide) in paragraph at lines 757--759 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 759--761 []\T1/pcr/m/n/10 SetMinimalNodeAttributes() Overfull \hbox (34.06111pt too wide) in paragraph at lines 759--761 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 761--763 []\T1/pcr/m/n/10 SetMortalityDistribution() Overfull \hbox (34.06111pt too wide) in paragraph at lines 761--763 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 763--765 []\T1/pcr/m/n/10 SetMortalityRate() Overfull \hbox (34.06111pt too wide) in paragraph at lines 763--765 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 765--767 []\T1/pcr/m/n/10 SetNodeDefaultFromTemplate() Overfull \hbox (34.06111pt too wide) in paragraph at lines 765--767 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 767--769 []\T1/pcr/m/n/10 SetOverdispersion() Overfull \hbox (34.06111pt too wide) in paragraph at lines 767--769 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 769--771 []\T1/pcr/m/n/10 SimpleSusceptibilityDistribution() \T1/ptm/m/n/10 (\T1/ptm/m/i t/10 in Overfull \hbox (46.96086pt too wide) in paragraph at lines 769--771 \T1/ptm/m/it/10 mod-ule emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/ 10 ), Overfull \hbox (34.70026pt too wide) in paragraph at lines 771--773 []\T1/pcr/m/n/10 simulation() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializ ation.dtkFileTools.DtkFileV1 Overfull \hbox (34.70026pt too wide) in paragraph at lines 773--775 []\T1/pcr/m/n/10 simulation() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializ ation.dtkFileTools.DtkFileV2 Overfull \hbox (34.70026pt too wide) in paragraph at lines 775--777 []\T1/pcr/m/n/10 simulation() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializ ation.dtkFileTools.DtkFileV3 Overfull \hbox (2.94016pt too wide) in paragraph at lines 777--778 []\T1/pcr/m/n/10 Snappy \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in emod_api.seria lization.dtkFileSupport\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 778--779 []\T1/pcr/m/n/10 SpatialNode \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 779--781 []\T1/pcr/m/n/10 SpatialReport \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 781--783 []\T1/pcr/m/n/10 StandardDiagnostic() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ul e Overfull \hbox (2.8303pt too wide) in paragraph at lines 783--785 []\T1/pcr/m/n/10 start() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.spatialreport s.spatial.SpatialReport Overfull \hbox (50.83089pt too wide) in paragraph at lines 785--787 []\T1/pcr/m/n/10 start_time() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channelr eports.channels.ChannelReport Overfull \hbox (19.71117pt too wide) in paragraph at lines 787--789 []\T1/pcr/m/n/10 start_time() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channelr eports.channels.Header Overfull \hbox (91.05998pt too wide) in paragraph at lines 789--791 []\T1/pcr/m/n/10 STATIC 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[]\T1/pcr/m/n/10 time_stamp() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channelr eports.channels.Header Overfull \hbox (32.8303pt too wide) in paragraph at lines 806--808 []\T1/pcr/m/n/10 time_steps() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.spatialr eports.spatial.SpatialReport Underfull \hbox (badness 5741) in paragraph at lines 808--810 []\T1/pcr/m/n/10 title() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channelreport s.channels.Channel Overfull \hbox (82.17072pt too wide) in paragraph at lines 811--813 []\T1/pcr/m/n/10 to_dict() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographic s.Demographics.DemographicsOverlay Underfull \hbox (badness 10000) in paragraph at lines 813--814 []\T1/pcr/m/n/10 to_dict() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographic s.Node.Node Overfull \hbox (110.1895pt too wide) in paragraph at lines 814--816 []\T1/pcr/m/n/10 to_dict() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographic s.PropertiesAndAttributes.IndividualAttributes Overfull \hbox (176.8387pt 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10000) in paragraph at lines 870--872 []\T1/pcr/m/n/10 validate_res_in_arcsec() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule Overfull \hbox (17.1711pt too wide) in paragraph at lines 870--872 \T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/ptm/m/n/10 ), Overfull \hbox (5.59027pt too wide) in paragraph at lines 872--874 []\T1/pcr/m/n/10 version() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializati on.dtkFileTools.DtkFile Overfull \hbox (81.59949pt too wide) in paragraph at lines 879--881 []\T1/pcr/m/n/10 write() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serialization .SerializedPopulation.SerializedPopulation Underfull \hbox (badness 10000) in paragraph at lines 881--882 []\T1/pcr/m/n/10 write() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 882--884 []\T1/pcr/m/n/10 write_config_from_default_and_params() Overfull \hbox (75.65076pt too wide) in paragraph at lines 882--884 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule 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