Read the Docs build information Build id: 761432 Project: institute-for-disease-modeling-emod-malaria Version: latest Commit: 3503d528eac232f860af3e635e04e4c0249a28de Date: 2021-11-01T19:59:10.510027Z State: finished Success: False [rtd-command-info] start-time: 2021-11-01T19:59:12.603111Z, end-time: 2021-11-01T19:59:30.678822Z, duration: 18, exit-code: 0 git clone --no-single-branch --depth 50 git@github.com:InstituteforDiseaseModeling/EMOD-docs.git . Cloning into '.'... Warning: Permanently added 'github.com,192.30.255.113' (RSA) to the list of known hosts. [rtd-command-info] start-time: 2021-11-01T19:59:30.813161Z, end-time: 2021-11-01T19:59:31.286502Z, duration: 0, exit-code: 0 git checkout --force origin/malaria-ongoing Note: checking out 'origin/malaria-ongoing'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at 3503d528 Merge pull request #1422 from Bridenbecker/ParameterUpdate [rtd-command-info] start-time: 2021-11-01T19:59:31.399925Z, end-time: 2021-11-01T19:59:31.472806Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2021-11-01T19:59:32.879728Z, end-time: 2021-11-01T19:59:37.937762Z, duration: 5, exit-code: 0 python3.7 -mvirtualenv Using base prefix '/home/docs/.pyenv/versions/3.7.9' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-malaria/envs/latest/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-malaria/envs/latest/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2021-11-01T19:59:38.040927Z, end-time: 2021-11-01T19:59:39.218913Z, duration: 1, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip setuptools Requirement already satisfied: pip in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-malaria/envs/latest/lib/python3.7/site-packages (21.3.1) Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-malaria/envs/latest/lib/python3.7/site-packages (58.4.0) [rtd-command-info] start-time: 2021-11-01T19:59:39.344654Z, end-time: 2021-11-01T19:59:47.352541Z, duration: 8, exit-code: 0 python -m pip install --upgrade --no-cache-dir mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<2.2 Collecting mock==1.0.1 Downloading mock-1.0.1.zip (861 kB) Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.5-py2.py3-none-any.whl (3.1 MB) Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) Collecting readthedocs-sphinx-ext<2.2 Downloading readthedocs_sphinx_ext-2.1.4-py2.py3-none-any.whl (29 kB) Collecting future Downloading future-0.18.2.tar.gz (829 kB) Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting docutils>=0.11 Downloading docutils-0.18-py2.py3-none-any.whl (569 kB) Collecting requests>=2.0.0 Downloading 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sha256=bc06ad74c144509bc73aeba1ee24d838f0382399a14c1400d1b7a01e8872cdae Stored in directory: /tmp/pip-ephem-wheel-cache-w4t6kjn7/wheels/7a/94/b1/0fdc5339a5bd487a5cc15421ec200d9ba3e2aa7190e4a727f1 Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491070 sha256=3fc7baf3bdd94cc8845eda90f7429a4ab9117468f4e068108f211d20f0f968ea Stored in directory: /tmp/pip-ephem-wheel-cache-w4t6kjn7/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0 Successfully built mock future Installing collected packages: urllib3, sphinxcontrib-serializinghtml, pytz, pyparsing, MarkupSafe, idna, charset-normalizer, certifi, sphinxcontrib-websupport, snowballstemmer, six, requests, Pygments, packaging, Jinja2, imagesize, future, docutils, babel, alabaster, sphinx, commonmark, sphinx-rtd-theme, recommonmark, readthedocs-sphinx-ext, pillow, mock Successfully installed Jinja2-3.0.2 MarkupSafe-2.0.1 Pygments-2.10.0 alabaster-0.7.12 babel-2.9.1 certifi-2021.10.8 charset-normalizer-2.0.7 commonmark-0.8.1 docutils-0.18 future-0.18.2 idna-3.3 imagesize-1.2.0 mock-1.0.1 packaging-21.2 pillow-5.4.1 pyparsing-2.4.7 pytz-2021.3 readthedocs-sphinx-ext-2.1.4 recommonmark-0.5.0 requests-2.26.0 six-1.16.0 snowballstemmer-2.1.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-serializinghtml-1.1.5 sphinxcontrib-websupport-1.2.4 urllib3-1.26.7 [rtd-command-info] start-time: 2021-11-01T19:59:47.463721Z, end-time: 2021-11-01T19:59:53.065617Z, duration: 5, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r requirements.txt Collecting sphinx-rtd-theme~=0.5.0 Downloading sphinx_rtd_theme-0.5.2-py2.py3-none-any.whl (9.1 MB) Collecting sphinxcontrib-napoleon~=0.7 Downloading sphinxcontrib_napoleon-0.7-py2.py3-none-any.whl (17 kB) Collecting sphinx~=3.2.0 Downloading Sphinx-3.2.1-py3-none-any.whl (2.9 MB) Collecting plantweb~=1.2.1 Downloading plantweb-1.2.1-py3-none-any.whl (20 kB) Collecting numpy~=1.19.1 Downloading numpy-1.19.5-cp37-cp37m-manylinux2010_x86_64.whl (14.8 MB) Collecting numpydoc~=1.0.0 Downloading numpydoc-1.0.0-py3-none-any.whl (47 kB) Collecting docutils<0.17 Downloading docutils-0.16-py2.py3-none-any.whl (548 kB) Collecting pockets>=0.3 Downloading pockets-0.9.1-py2.py3-none-any.whl (26 kB) Requirement already satisfied: six>=1.5.2 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-malaria/envs/latest/lib/python3.7/site-packages (from sphinxcontrib-napoleon~=0.7->-r requirements.txt (line 2)) (1.16.0) Collecting sphinxcontrib-jsmath Downloading sphinxcontrib_jsmath-1.0.1-py2.py3-none-any.whl (5.1 kB) Requirement already satisfied: Pygments>=2.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-malaria/envs/latest/lib/python3.7/site-packages (from sphinx~=3.2.0->-r requirements.txt (line 3)) (2.10.0) Collecting sphinxcontrib-devhelp Downloading sphinxcontrib_devhelp-1.0.2-py2.py3-none-any.whl (84 kB) Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-malaria/envs/latest/lib/python3.7/site-packages (from sphinx~=3.2.0->-r requirements.txt (line 3)) (58.4.0) Collecting sphinxcontrib-htmlhelp Downloading sphinxcontrib_htmlhelp-2.0.0-py2.py3-none-any.whl (100 kB) Requirement already satisfied: snowballstemmer>=1.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-malaria/envs/latest/lib/python3.7/site-packages (from sphinx~=3.2.0->-r requirements.txt (line 3)) (2.1.0) Requirement already satisfied: Jinja2>=2.3 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-malaria/envs/latest/lib/python3.7/site-packages (from sphinx~=3.2.0->-r requirements.txt (line 3)) (3.0.2) Requirement already satisfied: babel>=1.3 in 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(line 3)) (1.2.0) Collecting sphinxcontrib-applehelp Downloading sphinxcontrib_applehelp-1.0.2-py2.py3-none-any.whl (121 kB) Requirement already satisfied: alabaster<0.8,>=0.7 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-malaria/envs/latest/lib/python3.7/site-packages (from sphinx~=3.2.0->-r requirements.txt (line 3)) (0.7.12) Requirement already satisfied: requests>=2.5.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-malaria/envs/latest/lib/python3.7/site-packages (from sphinx~=3.2.0->-r requirements.txt (line 3)) (2.26.0) Requirement already satisfied: pytz>=2015.7 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-malaria/envs/latest/lib/python3.7/site-packages (from babel>=1.3->sphinx~=3.2.0->-r requirements.txt (line 3)) (2021.3) Requirement already satisfied: MarkupSafe>=2.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-malaria/envs/latest/lib/python3.7/site-packages (from Jinja2>=2.3->sphinx~=3.2.0->-r requirements.txt (line 3)) (2.0.1) Requirement already satisfied: certifi>=2017.4.17 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-malaria/envs/latest/lib/python3.7/site-packages (from requests>=2.5.0->sphinx~=3.2.0->-r requirements.txt (line 3)) (2021.10.8) Requirement already satisfied: idna<4,>=2.5 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-malaria/envs/latest/lib/python3.7/site-packages (from requests>=2.5.0->sphinx~=3.2.0->-r requirements.txt (line 3)) (3.3) Requirement already satisfied: urllib3<1.27,>=1.21.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-malaria/envs/latest/lib/python3.7/site-packages (from requests>=2.5.0->sphinx~=3.2.0->-r requirements.txt (line 3)) (1.26.7) Requirement already satisfied: charset-normalizer~=2.0.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-malaria/envs/latest/lib/python3.7/site-packages (from requests>=2.5.0->sphinx~=3.2.0->-r requirements.txt (line 3)) (2.0.7) Requirement already satisfied: pyparsing<3,>=2.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-malaria/envs/latest/lib/python3.7/site-packages (from packaging->sphinx~=3.2.0->-r requirements.txt (line 3)) (2.4.7) Installing collected packages: sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, docutils, sphinx, pockets, sphinxcontrib-napoleon, sphinx-rtd-theme, plantweb, numpydoc, numpy Attempting uninstall: docutils Found existing installation: docutils 0.18 Uninstalling docutils-0.18: Successfully uninstalled docutils-0.18 Attempting uninstall: sphinx Found existing installation: Sphinx 1.8.5 Uninstalling Sphinx-1.8.5: Successfully uninstalled Sphinx-1.8.5 Attempting uninstall: sphinx-rtd-theme Found existing installation: sphinx-rtd-theme 0.4.3 Uninstalling sphinx-rtd-theme-0.4.3: Successfully uninstalled sphinx-rtd-theme-0.4.3 Successfully installed docutils-0.16 numpy-1.19.5 numpydoc-1.0.0 plantweb-1.2.1 pockets-0.9.1 sphinx-3.2.1 sphinx-rtd-theme-0.5.2 sphinxcontrib-applehelp-1.0.2 sphinxcontrib-devhelp-1.0.2 sphinxcontrib-htmlhelp-2.0.0 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-napoleon-0.7 sphinxcontrib-qthelp-1.0.3 [rtd-command-info] start-time: 2021-11-01T19:59:54.194726Z, end-time: 2021-11-01T19:59:54.262965Z, duration: 0, exit-code: 0 cat emod/malaria/conf.py # -*- coding: utf-8 -*- # # Sphinx Demo documentation build configuration file, created by # sphinx-quickstart on Fri Aug 26 16:52:16 2016. # # This file is execfile()d with the current directory set to its # containing dir. # # Note that not all possible configuration values are present in this # autogenerated file. # # All configuration values have a default; values that are commented out # serve to show the default. # If extensions (or modules to document with autodoc) are in another directory, # add these directories to sys.path here. If the directory is relative to the # documentation root, use os.path.abspath to make it absolute, like shown here. # # See all configuration options: # https://www.sphinx-doc.org/en/master/usage/configuration.html import os import sys # -- Shared Configuration ------------------------------------------------- sys.path.insert(0, os.path.abspath(f"{os.path.dirname(__file__)}/..")) from conf import * # -- Project Information -------------------------------------------------- # General information about the project. project = 'Malaria Model' key = "emod-malaria" # Additional Metadata short_title = 'EMOD for Malaria' long_title = 'EMOD Modeling Software for Malaria' description = 'How to use the IDM EMOD software for modeling malaria.' # -- General configuration ------------------------------------------------ tags.add('malaria') # -- Options for HTML output ---------------------------------------------- # A dictionary of values to pass into the template engine’s context for all pages. # Single values can also be put in this dictionary using the -A command-line option of sphinx-build. html_context.update({ 'docset_title': short_title }) # If true, an OpenSearch description file will be output, and all pages will # contain a tag referring to it. The value of this option must be the # base URL from which the finished HTML is served. # html_use_opensearch = f'{opensearch_baseurl}/{key}' # -- Options for HTML help output ----------------------------------------- # Output file base name for HTML help builder. htmlhelp_basename = short_title # -- Options for LaTeX output --------------------------------------------- # Grouping the document tree into LaTeX files. List of tuples # (source start file, target name, title, # author, documentclass [howto, manual, or own class]). latex_documents = [ (master_doc, f'{key}-docs.tex', long_title, author, 'manual'), ] # -- Options for manual page output --------------------------------------- # One entry per manual page. List of tuples # (source start file, name, description, authors, manual section). man_pages = [ (master_doc, f'{key}-docs', long_title, [author], 1) ] # -- Options for Texinfo output ------------------------------------------- # Grouping the document tree into Texinfo files. List of tuples # (source start file, target name, title, author, # dir menu entry, description, category) texinfo_documents = [ (master_doc, f'{key}-docs', long_title, author, author, description, 'Miscellaneous'), ] ########################################################################### # auto-created readthedocs.org specific configuration # ########################################################################### # # The following code was added during an automated build on readthedocs.org # It is auto created and injected for every build. The result is based on the # conf.py.tmpl file found in the readthedocs.org codebase: # https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl # # Note: this file shouldn't rely on extra dependencies. import importlib import sys import os.path # Borrowed from six. PY3 = sys.version_info[0] == 3 string_types = str if PY3 else basestring from sphinx import version_info # Get suffix for proper linking to GitHub # This is deprecated in Sphinx 1.3+, # as each page can have its own suffix if globals().get('source_suffix', False): if isinstance(source_suffix, string_types): SUFFIX = source_suffix elif isinstance(source_suffix, (list, tuple)): # Sphinx >= 1.3 supports list/tuple to define multiple suffixes SUFFIX = source_suffix[0] elif isinstance(source_suffix, dict): # Sphinx >= 1.8 supports a mapping dictionary for multiple suffixes SUFFIX = list(source_suffix.keys())[0] # make a ``list()`` for py2/py3 compatibility else: # default to .rst SUFFIX = '.rst' else: SUFFIX = '.rst' # Add RTD Static Path. Add to the end because it overwrites previous files. if not 'html_static_path' in globals(): html_static_path = [] if os.path.exists('_static'): html_static_path.append('_static') # Add RTD Theme only if they aren't overriding it already using_rtd_theme = ( ( 'html_theme' in globals() and html_theme in ['default'] and # Allow people to bail with a hack of having an html_style 'html_style' not in globals() ) or 'html_theme' not in globals() ) if using_rtd_theme: theme = importlib.import_module('sphinx_rtd_theme') html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} if 'html_theme_path' in globals(): html_theme_path.append(theme.get_html_theme_path()) else: html_theme_path = [theme.get_html_theme_path()] if globals().get('websupport2_base_url', False): websupport2_base_url = 'https://readthedocs.com/websupport' websupport2_static_url = 'https://assets.readthedocs.com/' #Add project information to the template context. context = { 'using_theme': using_rtd_theme, 'html_theme': html_theme, 'current_version': "latest", 'version_slug': "latest", 'MEDIA_URL': "https://media.readthedocs.com/media/", 'STATIC_URL': "https://assets.readthedocs.com/", 'PRODUCTION_DOMAIN': "readthedocs.com", 'versions': [ ("latest", "/en/latest/"), ("2.21", "/en/2.21/"), ("2.20", "/en/2.20/"), ("2.18", "/en/2.18/"), ("2.14", "/en/2.14/"), ("2.13", "/en/2.13/"), ("2.10", "/en/2.10/"), ], 'downloads': [ ("html", "//docs.idmod.org/_/downloads/emod-malaria/en/latest/htmlzip/"), ], 'subprojects': [ ], 'slug': 'institute-for-disease-modeling-emod-malaria', 'name': u'EMOD Malaria', 'rtd_language': u'en', 'programming_language': u'words', 'canonical_url': 'https://docs.idmod.org/projects/emod-malaria/en/latest/', 'analytics_code': 'UA-87656833-3', 'single_version': False, 'conf_py_path': '/emod/malaria/', 'api_host': 'https://readthedocs.com', 'github_user': 'InstituteforDiseaseModeling', 'proxied_api_host': '/_', 'github_repo': 'EMOD-docs', 'github_version': 'malaria-ongoing', 'display_github': True, 'bitbucket_user': 'None', 'bitbucket_repo': 'None', 'bitbucket_version': 'malaria-ongoing', 'display_bitbucket': False, 'gitlab_user': 'None', 'gitlab_repo': 'None', 'gitlab_version': 'malaria-ongoing', 'display_gitlab': False, 'READTHEDOCS': True, 'using_theme': (html_theme == "default"), 'new_theme': (html_theme == "sphinx_rtd_theme"), 'source_suffix': SUFFIX, 'ad_free': False, 'docsearch_disabled': False, 'user_analytics_code': 'UA-87656833-3', 'global_analytics_code': 'UA-17997319-2', 'commit': '3503d528', } # For sphinx >=1.8 we can use html_baseurl to set the canonical URL. # https://www.sphinx-doc.org/en/master/usage/configuration.html#confval-html_baseurl if version_info >= (1, 8): if not globals().get('html_baseurl'): html_baseurl = context['canonical_url'] context['canonical_url'] = None if 'html_context' in globals(): html_context.update(context) else: html_context = context # Add custom RTD extension if 'extensions' in globals(): # Insert at the beginning because it can interfere # with other extensions. # See https://github.com/rtfd/readthedocs.org/pull/4054 extensions.insert(0, "readthedocs_ext.readthedocs") else: extensions = ["readthedocs_ext.readthedocs"] # Add External version warning banner to the external version documentation if 'branch' == 'external': extensions.insert(1, "readthedocs_ext.external_version_warning") readthedocs_vcs_url = 'None' readthedocs_build_url = 'https://readthedocs.com/projects/institute-for-disease-modeling-emod-malaria/builds/761432/' project_language = 'en' # User's Sphinx configurations language_user = globals().get('language', None) latex_engine_user = globals().get('latex_engine', None) latex_elements_user = globals().get('latex_elements', None) # Remove this once xindy gets installed in Docker image and XINDYOPS # env variable is supported # https://github.com/rtfd/readthedocs-docker-images/pull/98 latex_use_xindy = False chinese = any([ language_user in ('zh_CN', 'zh_TW'), project_language in ('zh_CN', 'zh_TW'), ]) japanese = any([ language_user == 'ja', project_language == 'ja', ]) if chinese: latex_engine = latex_engine_user or 'xelatex' latex_elements_rtd = { 'preamble': '\\usepackage[UTF8]{ctex}\n', } latex_elements = latex_elements_user or latex_elements_rtd elif japanese: latex_engine = latex_engine_user or 'platex' # Make sure our build directory is always excluded exclude_patterns = globals().get('exclude_patterns', []) exclude_patterns.extend(['_build']) [rtd-command-info] start-time: 2021-11-01T19:59:54.372751Z, end-time: 2021-11-01T20:00:31.689490Z, duration: 37, exit-code: 1 python -m sphinx -T -E -W --keep-going -b html -d _build/doctrees -D language=en . _build/html Running Sphinx v3.2.1 loading translations [en]... done making output directory... done loading intersphinx inventory from https://docs.python.org/3/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emod-api/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emodpy/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emodpy-covid/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emodpy-generic/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emodpy-generic/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emodpy-measles/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emodpy-tbhiv/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/idmtools/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emod-malaria/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emod-generic/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emod-airborne/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emod-tuberculosis/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emod-sti/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emod-hiv/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emod-environmental/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emod-typhoid/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emod-vector/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/pycomps/en/latest/objects.inv... resolved configuration: {'PY3': True, 'SUFFIX': '.rst', '__file__': '/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-malaria/checkouts/latest/emod/malaria/conf.py', 'author': 'Institute for Disease Modeling', 'chinese': False, 'context': {'MEDIA_URL': 'https://media.readthedocs.com/media/', 'PRODUCTION_DOMAIN': 'readthedocs.com', 'READTHEDOCS': True, 'STATIC_URL': 'https://assets.readthedocs.com/', 'ad_free': False, 'analytics_code': 'UA-87656833-3', 'api_host': 'https://readthedocs.com', 'bitbucket_repo': 'None', 'bitbucket_user': 'None', 'bitbucket_version': 'malaria-ongoing', 'canonical_url': None, 'commit': '3503d528', 'conf_py_path': '/emod/malaria/', 'current_version': 'latest', 'display_bitbucket': False, 'display_github': True, 'display_gitlab': False, 'docsearch_disabled': False, 'downloads': [('html', '//docs.idmod.org/_/downloads/emod-malaria/en/latest/htmlzip/')], 'github_repo': 'EMOD-docs', 'github_user': 'InstituteforDiseaseModeling', 'github_version': 'malaria-ongoing', 'gitlab_repo': 'None', 'gitlab_user': 'None', 'gitlab_version': 'malaria-ongoing', 'global_analytics_code': 'UA-17997319-2', 'html_theme': 'sphinx_rtd_theme', 'name': 'EMOD Malaria', 'new_theme': True, 'programming_language': 'words', 'proxied_api_host': '/_', 'rtd_language': 'en', 'single_version': False, 'slug': 'institute-for-disease-modeling-emod-malaria', 'source_suffix': '.rst', 'subprojects': [], 'user_analytics_code': 'UA-87656833-3', 'using_theme': False, 'version_slug': 'latest', 'versions': [('latest', '/en/latest/'), ('2.21', '/en/2.21/'), ('2.20', '/en/2.20/'), ('2.18', '/en/2.18/'), ('2.14', '/en/2.14/'), ('2.13', '/en/2.13/'), ('2.10', '/en/2.10/')]}, 'copyright': '1999 - 2021, Bill & Melinda Gates Foundation. All rights ' 'reserved.', 'datetime': , 'description': 'How to use the IDM EMOD software for modeling malaria.', 'exclude_patterns': ['_build', 'Thumbs.db', '.DS_Store', '_build'], 'extensions': ['readthedocs_ext.readthedocs', 'sphinx.ext.mathjax', 'sphinx.ext.intersphinx'], 'html_baseurl': 'https://docs.idmod.org/projects/emod-malaria/en/latest/', 'html_context': {'MEDIA_URL': 'https://media.readthedocs.com/media/', 'PRODUCTION_DOMAIN': 'readthedocs.com', 'READTHEDOCS': True, 'STATIC_URL': 'https://assets.readthedocs.com/', 'ad_free': False, 'analytics_code': 'UA-87656833-3', 'api_host': 'https://readthedocs.com', 'bitbucket_repo': 'None', 'bitbucket_user': 'None', 'bitbucket_version': 'malaria-ongoing', 'canonical_url': None, 'commit': '3503d528', 'conf_py_path': '/emod/malaria/', 'current_version': 'latest', 'display_bitbucket': False, 'display_github': True, 'display_gitlab': False, 'docsearch_disabled': False, 'docset_title': 'EMOD for Malaria', 'downloads': [('html', 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