Read the Docs build information Build id: 755024 Project: institute-for-disease-modeling-emod-api Version: v1.16.2 Commit: f7c97c188d8cd25a3515a1a4282f446056bfe08c Date: 2021-10-25T18:06:56.486495Z State: finished Success: True [rtd-command-info] start-time: 2021-10-25T18:06:58.567577Z, end-time: 2021-10-25T18:07:00.662076Z, duration: 2, exit-code: 0 git clone --no-single-branch --depth 50 git@github.com:InstituteforDiseaseModeling/emod-api.git . Cloning into '.'... Warning: Permanently added 'github.com,192.30.255.112' (RSA) to the list of known hosts. [rtd-command-info] start-time: 2021-10-25T18:07:00.817926Z, end-time: 2021-10-25T18:07:01.036344Z, duration: 0, exit-code: 0 git checkout --force f7c97c188d8cd25a3515a1a4282f446056bfe08c Note: checking out 'f7c97c188d8cd25a3515a1a4282f446056bfe08c'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at f7c97c1 Bump version: 1.16.1 → 1.16.2 [rtd-command-info] start-time: 2021-10-25T18:07:01.206485Z, end-time: 2021-10-25T18:07:01.276904Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2021-10-25T18:07:02.627230Z, end-time: 2021-10-25T18:07:09.069819Z, duration: 6, exit-code: 0 python3.7 -mvirtualenv --system-site-packages Using base prefix '/home/docs/.pyenv/versions/3.7.9' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/v1.16.2/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/v1.16.2/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2021-10-25T18:07:09.222209Z, end-time: 2021-10-25T18:07:10.554392Z, duration: 1, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip setuptools Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/simple Requirement already satisfied: pip in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/v1.16.2/lib/python3.7/site-packages (21.3.1) Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/v1.16.2/lib/python3.7/site-packages (58.3.0) [rtd-command-info] start-time: 2021-10-25T18:07:10.696687Z, end-time: 2021-10-25T18:07:20.459777Z, duration: 9, exit-code: 0 python -m pip install --upgrade --no-cache-dir -I mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<2.2 Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/simple Collecting mock==1.0.1 Downloading mock-1.0.1.zip (861 kB) Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.5-py2.py3-none-any.whl (3.1 MB) Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) Collecting readthedocs-sphinx-ext<2.2 Downloading readthedocs_sphinx_ext-2.1.4-py2.py3-none-any.whl (29 kB) Collecting future Downloading future-0.18.2.tar.gz (829 kB) Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting docutils>=0.11 Downloading docutils-0.17.1-py2.py3-none-any.whl (575 kB) Collecting Pygments>=2.0 Downloading Pygments-2.10.0-py3-none-any.whl (1.0 MB) Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.1.0-py2.py3-none-any.whl (93 kB) Collecting Jinja2>=2.3 Downloading Jinja2-3.0.2-py3-none-any.whl (133 kB) Collecting packaging Downloading packaging-21.0-py3-none-any.whl (40 kB) Collecting sphinxcontrib-websupport Downloading sphinxcontrib_websupport-1.2.4-py2.py3-none-any.whl (39 kB) Collecting babel!=2.0,>=1.3 Downloading Babel-2.9.1-py2.py3-none-any.whl (8.8 MB) Collecting setuptools Downloading setuptools-58.3.0-py3-none-any.whl (946 kB) Collecting requests>=2.0.0 Downloading requests-2.26.0-py2.py3-none-any.whl (62 kB) Collecting imagesize Downloading imagesize-1.2.0-py2.py3-none-any.whl (4.8 kB) Collecting six>=1.5 Downloading six-1.16.0-py2.py3-none-any.whl (11 kB) Collecting pytz>=2015.7 Downloading pytz-2021.3-py2.py3-none-any.whl (503 kB) Collecting MarkupSafe>=2.0 Downloading MarkupSafe-2.0.1-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (31 kB) Collecting charset-normalizer~=2.0.0 Downloading charset_normalizer-2.0.7-py3-none-any.whl (38 kB) Collecting certifi>=2017.4.17 Downloading certifi-2021.10.8-py2.py3-none-any.whl (149 kB) Collecting idna<4,>=2.5 Downloading idna-3.3-py3-none-any.whl (61 kB) Collecting urllib3<1.27,>=1.21.1 Downloading urllib3-1.26.7-py2.py3-none-any.whl (138 kB) Collecting pyparsing>=2.0.2 Downloading pyparsing-3.0.1-py3-none-any.whl (96 kB) Collecting sphinxcontrib-serializinghtml Downloading sphinxcontrib_serializinghtml-1.1.5-py2.py3-none-any.whl (94 kB) Building wheels for collected packages: mock, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23772 sha256=6775ed0e629c9251ba71d11075d3f0e47673aed6fadd5e7f7753327cf9756106 Stored in directory: /tmp/pip-ephem-wheel-cache-sjb8aqbx/wheels/7a/94/b1/0fdc5339a5bd487a5cc15421ec200d9ba3e2aa7190e4a727f1 Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491070 sha256=8bd792e64baf7872df60783f6dbd5e3f2d29f373c1144e9eaa633d91078a8cec Stored in directory: /tmp/pip-ephem-wheel-cache-sjb8aqbx/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0 Successfully built mock future Installing collected packages: urllib3, sphinxcontrib-serializinghtml, pytz, pyparsing, MarkupSafe, idna, charset-normalizer, certifi, sphinxcontrib-websupport, snowballstemmer, six, setuptools, requests, Pygments, packaging, Jinja2, imagesize, future, docutils, babel, alabaster, sphinx, commonmark, sphinx-rtd-theme, recommonmark, readthedocs-sphinx-ext, pillow, mock Successfully installed Jinja2-3.0.2 MarkupSafe-2.0.1 Pygments-2.10.0 alabaster-0.7.12 babel-2.9.1 certifi-2021.10.8 charset-normalizer-2.0.7 commonmark-0.8.1 docutils-0.17.1 future-0.18.2 idna-3.3 imagesize-1.2.0 mock-1.0.1 packaging-21.0 pillow-5.4.1 pyparsing-3.0.1 pytz-2021.3 readthedocs-sphinx-ext-2.1.4 recommonmark-0.5.0 requests-2.26.0 setuptools-58.3.0 six-1.16.0 snowballstemmer-2.1.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-serializinghtml-1.1.5 sphinxcontrib-websupport-1.2.4 urllib3-1.26.7 ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts. matplotlib 3.3.2 requires pillow>=6.2.0, but you have pillow 5.4.1 which is incompatible. [rtd-command-info] start-time: 2021-10-25T18:07:20.595851Z, end-time: 2021-10-25T18:07:26.106924Z, duration: 5, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r requirements.txt Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/simple Requirement already satisfied: numpy!=1.19.4 in /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages (from -r requirements.txt (line 1)) (1.19.2) Collecting lz4 Downloading lz4-3.1.3-cp37-cp37m-manylinux2010_x86_64.whl (1.8 MB) Collecting pyyaml Downloading PyYAML-6.0-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (596 kB) Requirement already satisfied: pandas in /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages (from -r requirements.txt (line 4)) (1.1.3) Requirement already satisfied: scipy in /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages (from -r requirements.txt (line 5)) (1.5.3) Collecting shapely Downloading Shapely-1.8.0-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.whl (1.1 MB) Collecting pyproj Downloading pyproj-3.2.1-cp37-cp37m-manylinux2010_x86_64.whl (6.3 MB) Collecting geographiclib Downloading geographiclib-1.52-py3-none-any.whl (38 kB) Collecting sklearn Downloading sklearn-0.0.tar.gz (1.1 kB) Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Requirement already satisfied: python-dateutil>=2.7.3 in /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages (from pandas->-r requirements.txt (line 4)) (2.8.1) Requirement already satisfied: pytz>=2017.2 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/v1.16.2/lib/python3.7/site-packages (from pandas->-r requirements.txt (line 4)) (2021.3) Requirement already satisfied: certifi in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/v1.16.2/lib/python3.7/site-packages (from pyproj->-r requirements.txt (line 7)) (2021.10.8) Collecting scikit-learn Downloading scikit_learn-1.0.1-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (23.2 MB) Requirement already satisfied: six>=1.5 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/v1.16.2/lib/python3.7/site-packages (from python-dateutil>=2.7.3->pandas->-r requirements.txt (line 4)) (1.16.0) Collecting joblib>=0.11 Downloading joblib-1.1.0-py2.py3-none-any.whl (306 kB) Collecting threadpoolctl>=2.0.0 Downloading threadpoolctl-3.0.0-py3-none-any.whl (14 kB) Building wheels for collected packages: sklearn Building wheel for sklearn (setup.py): started Building wheel for sklearn (setup.py): finished with status 'done' Created wheel for sklearn: filename=sklearn-0.0-py2.py3-none-any.whl size=1309 sha256=13ac0fa7c68ed51acf672c378c132065dee7ff2e6b2db7796ecdff44763dff94 Stored in directory: /tmp/pip-ephem-wheel-cache-ppipfegb/wheels/46/ef/c3/157e41f5ee1372d1be90b09f74f82b10e391eaacca8f22d33e Successfully built sklearn Installing collected packages: threadpoolctl, joblib, scikit-learn, sklearn, shapely, pyyaml, pyproj, lz4, geographiclib Successfully installed geographiclib-1.52 joblib-1.1.0 lz4-3.1.3 pyproj-3.2.1 pyyaml-6.0 scikit-learn-1.0.1 shapely-1.8.0 sklearn-0.0 threadpoolctl-3.0.0 [rtd-command-info] start-time: 2021-10-25T18:07:26.233039Z, end-time: 2021-10-25T18:07:32.677998Z, duration: 6, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r docs/requirements.txt Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/simple Collecting sphinx-rtd-theme~=0.5.0 Downloading sphinx_rtd_theme-0.5.2-py2.py3-none-any.whl (9.1 MB) Collecting sphinxcontrib-napoleon~=0.7 Downloading sphinxcontrib_napoleon-0.7-py2.py3-none-any.whl (17 kB) Collecting sphinx~=3.2.1 Downloading Sphinx-3.2.1-py3-none-any.whl (2.9 MB) Collecting plantweb~=1.2.1 Downloading plantweb-1.2.1-py3-none-any.whl (20 kB) Collecting sphinxcontrib-programoutput~=0.16 Downloading sphinxcontrib_programoutput-0.17-py2.py3-none-any.whl (22 kB) Collecting py-make Downloading py_make-0.1.1-py2.py3-none-any.whl (9.4 kB) Collecting PyGithub~=1.51 Downloading PyGithub-1.55-py3-none-any.whl (291 kB) Collecting pygit2~=1.2.1 Downloading pygit2-1.2.1-cp37-cp37m-manylinux2010_x86_64.whl (3.0 MB) Collecting sphinxext.remoteliteralinclude Downloading sphinxext_remoteliteralinclude-0.3.0-py3-none-any.whl (6.3 kB) Collecting sphinx-copybutton~=0.4.0 Downloading sphinx_copybutton-0.4.0-py3-none-any.whl (12 kB) Collecting docutils<0.17 Downloading docutils-0.16-py2.py3-none-any.whl (548 kB) Requirement already satisfied: six>=1.5.2 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/v1.16.2/lib/python3.7/site-packages (from sphinxcontrib-napoleon~=0.7->-r docs/requirements.txt (line 2)) (1.16.0) Collecting pockets>=0.3 Downloading pockets-0.9.1-py2.py3-none-any.whl (26 kB) Requirement already satisfied: babel>=1.3 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/v1.16.2/lib/python3.7/site-packages (from sphinx~=3.2.1->-r docs/requirements.txt (line 3)) (2.9.1) Collecting sphinxcontrib-jsmath Downloading sphinxcontrib_jsmath-1.0.1-py2.py3-none-any.whl (5.1 kB) Collecting sphinxcontrib-qthelp Downloading sphinxcontrib_qthelp-1.0.3-py2.py3-none-any.whl (90 kB) Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/v1.16.2/lib/python3.7/site-packages (from sphinx~=3.2.1->-r docs/requirements.txt (line 3)) (58.3.0) Collecting sphinxcontrib-applehelp Downloading sphinxcontrib_applehelp-1.0.2-py2.py3-none-any.whl (121 kB) Collecting sphinxcontrib-devhelp Downloading sphinxcontrib_devhelp-1.0.2-py2.py3-none-any.whl (84 kB) Requirement already satisfied: snowballstemmer>=1.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/v1.16.2/lib/python3.7/site-packages (from sphinx~=3.2.1->-r docs/requirements.txt (line 3)) (2.1.0) Requirement already satisfied: sphinxcontrib-serializinghtml in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/v1.16.2/lib/python3.7/site-packages (from sphinx~=3.2.1->-r docs/requirements.txt (line 3)) (1.1.5) Requirement already satisfied: imagesize in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/v1.16.2/lib/python3.7/site-packages (from sphinx~=3.2.1->-r docs/requirements.txt (line 3)) (1.2.0) Requirement already satisfied: requests>=2.5.0 in 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docs/requirements.txt (line 3)) (3.0.2) Requirement already satisfied: Pygments>=2.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/v1.16.2/lib/python3.7/site-packages (from sphinx~=3.2.1->-r docs/requirements.txt (line 3)) (2.10.0) Collecting docopt>=0.6.0 Downloading docopt-0.6.2.tar.gz (25 kB) Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting pynacl>=1.4.0 Downloading PyNaCl-1.4.0-cp35-abi3-manylinux1_x86_64.whl (961 kB) Collecting pyjwt>=2.0 Downloading PyJWT-2.3.0-py3-none-any.whl (16 kB) Collecting deprecated Downloading Deprecated-1.2.13-py2.py3-none-any.whl (9.6 kB) Collecting cffi>=1.4.0 Downloading cffi-1.15.0-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (427 kB) Collecting cached-property Downloading cached_property-1.5.2-py2.py3-none-any.whl (7.6 kB) Requirement already satisfied: pytz>=2015.7 in 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(from requests>=2.5.0->sphinx~=3.2.1->-r docs/requirements.txt (line 3)) (1.26.7) Requirement already satisfied: charset-normalizer~=2.0.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/v1.16.2/lib/python3.7/site-packages (from requests>=2.5.0->sphinx~=3.2.1->-r docs/requirements.txt (line 3)) (2.0.7) Requirement already satisfied: idna<4,>=2.5 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/v1.16.2/lib/python3.7/site-packages (from requests>=2.5.0->sphinx~=3.2.1->-r docs/requirements.txt (line 3)) (3.3) Collecting wrapt<2,>=1.10 Downloading wrapt-1.13.2-cp37-cp37m-manylinux2010_x86_64.whl (79 kB) Requirement already satisfied: pyparsing>=2.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/v1.16.2/lib/python3.7/site-packages (from packaging->sphinx~=3.2.1->-r docs/requirements.txt (line 3)) (3.0.1) Building wheels for collected packages: docopt Building wheel for docopt (setup.py): started Building wheel for docopt (setup.py): finished with status 'done' Created wheel for docopt: filename=docopt-0.6.2-py2.py3-none-any.whl size=13724 sha256=bedc31d1fd9800d377fa366aecda7a14c072937b4bc1a29951766ac05262e5f0 Stored in directory: /tmp/pip-ephem-wheel-cache-f4xzr8j7/wheels/72/b0/3f/1d95f96ff986c7dfffe46ce2be4062f38ebd04b506c77c81b9 Successfully built docopt Installing collected packages: pycparser, wrapt, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, docutils, cffi, sphinx, pynacl, pyjwt, pockets, docopt, deprecated, cached-property, sphinxext.remoteliteralinclude, sphinxcontrib-programoutput, sphinxcontrib-napoleon, sphinx-rtd-theme, sphinx-copybutton, PyGithub, pygit2, py-make, plantweb Attempting uninstall: docutils Found existing installation: docutils 0.17.1 Uninstalling docutils-0.17.1: Successfully uninstalled docutils-0.17.1 Attempting uninstall: sphinx Found existing installation: Sphinx 1.8.5 Uninstalling Sphinx-1.8.5: Successfully uninstalled Sphinx-1.8.5 Attempting uninstall: sphinx-rtd-theme Found existing installation: sphinx-rtd-theme 0.4.3 Uninstalling sphinx-rtd-theme-0.4.3: Successfully uninstalled sphinx-rtd-theme-0.4.3 Successfully installed PyGithub-1.55 cached-property-1.5.2 cffi-1.15.0 deprecated-1.2.13 docopt-0.6.2 docutils-0.16 plantweb-1.2.1 pockets-0.9.1 py-make-0.1.1 pycparser-2.20 pygit2-1.2.1 pyjwt-2.3.0 pynacl-1.4.0 sphinx-3.2.1 sphinx-copybutton-0.4.0 sphinx-rtd-theme-0.5.2 sphinxcontrib-applehelp-1.0.2 sphinxcontrib-devhelp-1.0.2 sphinxcontrib-htmlhelp-2.0.0 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-napoleon-0.7 sphinxcontrib-programoutput-0.17 sphinxcontrib-qthelp-1.0.3 sphinxext.remoteliteralinclude-0.3.0 wrapt-1.13.2 [rtd-command-info] start-time: 2021-10-25T18:07:32.839996Z, end-time: 2021-10-25T18:07:33.640701Z, duration: 0, exit-code: 0 python ./setup.py install --force running install running bdist_egg running egg_info creating emod_api.egg-info writing emod_api.egg-info/PKG-INFO writing dependency_links to emod_api.egg-info/dependency_links.txt writing requirements to emod_api.egg-info/requires.txt writing top-level names to emod_api.egg-info/top_level.txt writing manifest file 'emod_api.egg-info/SOURCES.txt' reading manifest file 'emod_api.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/v1.16.2/lib/python3.7/site-packages/setuptools/__init__.py:151: SetuptoolsDeprecationWarning: setup_requires is deprecated. Supply build dependencies using PEP 517 pyproject.toml build-requires. SetuptoolsDeprecationWarning, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/v1.16.2/lib/python3.7/site-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. setuptools.SetuptoolsDeprecationWarning, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/v1.16.2/lib/python3.7/site-packages/setuptools/command/easy_install.py:159: EasyInstallDeprecationWarning: easy_install command is deprecated. Use build and pip and other standards-based tools. EasyInstallDeprecationWarning, warning: no directories found matching 'emod_api/tests/data/*' warning: no directories found matching 'emod_api/dtk_tools/serialization/test-data/*' adding license file 'LICENSE' writing manifest file 'emod_api.egg-info/SOURCES.txt' installing library code to build/bdist.linux-x86_64/egg running install_lib running build_py creating build creating build/lib creating build/lib/emod_api copying emod_api/__main__.py -> build/lib/emod_api copying emod_api/__init__.py -> build/lib/emod_api copying emod_api/campaign.py -> build/lib/emod_api copying emod_api/schema_to_class.py -> build/lib/emod_api creating build/lib/examples copying examples/spatial_report.py -> build/lib/examples copying examples/weather_file.py -> build/lib/examples copying examples/write_config_from_default_and_params.py -> build/lib/examples copying examples/intervention_from_schema.py -> build/lib/examples copying examples/default_from_schema.py -> build/lib/examples copying examples/migration.py -> build/lib/examples copying examples/serialized_file_mc_to_sc.py -> build/lib/examples copying examples/__init__.py -> build/lib/examples copying examples/some_config_i_found.py -> build/lib/examples copying examples/insetchart.py -> build/lib/examples creating build/lib/emod_api/schema copying emod_api/schema/dtk_post_process_schema.py -> build/lib/emod_api/schema copying emod_api/schema/__main__.py -> build/lib/emod_api/schema copying emod_api/schema/get_schema.py -> build/lib/emod_api/schema copying emod_api/schema/__init__.py -> build/lib/emod_api/schema creating build/lib/emod_api/tabularoutput copying emod_api/tabularoutput/__main__.py -> build/lib/emod_api/tabularoutput copying emod_api/tabularoutput/__init__.py -> build/lib/emod_api/tabularoutput creating build/lib/emod_api/config copying emod_api/config/from_poi_and_binary.py -> build/lib/emod_api/config copying emod_api/config/from_schema.py -> build/lib/emod_api/config copying emod_api/config/dtk_post_process_adhocevents.py -> build/lib/emod_api/config copying emod_api/config/from_overrides.py -> build/lib/emod_api/config copying emod_api/config/default_from_schema.py -> build/lib/emod_api/config copying emod_api/config/__main__.py -> build/lib/emod_api/config copying emod_api/config/default_from_schema_no_validation.py -> build/lib/emod_api/config copying emod_api/config/schema_to_config.py -> build/lib/emod_api/config copying emod_api/config/dtk_pre_process_adhocevents.py -> build/lib/emod_api/config copying emod_api/config/__init__.py -> build/lib/emod_api/config copying emod_api/config/dtk_pre_process_w5ml.py -> build/lib/emod_api/config creating build/lib/emod_api/spatialreports copying emod_api/spatialreports/spatial.py -> build/lib/emod_api/spatialreports copying emod_api/spatialreports/__main__.py -> build/lib/emod_api/spatialreports copying emod_api/spatialreports/__init__.py -> build/lib/emod_api/spatialreports creating build/lib/emod_api/weather copying emod_api/weather/weather.py -> build/lib/emod_api/weather copying emod_api/weather/__main__.py -> build/lib/emod_api/weather copying emod_api/weather/__init__.py -> build/lib/emod_api/weather creating build/lib/emod_api/serialization copying emod_api/serialization/dtkFileSupport.py -> build/lib/emod_api/serialization copying emod_api/serialization/__main__.py -> build/lib/emod_api/serialization copying emod_api/serialization/dtkFileUtility.py -> build/lib/emod_api/serialization copying emod_api/serialization/dtkFileTools.py -> build/lib/emod_api/serialization copying emod_api/serialization/SerializedPopulation.py -> build/lib/emod_api/serialization copying emod_api/serialization/__init__.py -> build/lib/emod_api/serialization copying emod_api/serialization/CensusAndModPop.py -> build/lib/emod_api/serialization creating build/lib/emod_api/interventions copying emod_api/interventions/simple_vaccine.py -> build/lib/emod_api/interventions copying emod_api/interventions/import_pressure.py -> build/lib/emod_api/interventions copying emod_api/interventions/utils.py -> build/lib/emod_api/interventions copying emod_api/interventions/__main__.py -> build/lib/emod_api/interventions copying emod_api/interventions/outbreak.py -> build/lib/emod_api/interventions copying emod_api/interventions/__init__.py -> build/lib/emod_api/interventions copying emod_api/interventions/node_multiplier.py -> build/lib/emod_api/interventions copying emod_api/interventions/common.py -> build/lib/emod_api/interventions creating build/lib/emod_api/migration copying emod_api/migration/migration.py -> build/lib/emod_api/migration copying emod_api/migration/__main__.py -> build/lib/emod_api/migration copying emod_api/migration/__init__.py -> build/lib/emod_api/migration creating build/lib/emod_api/demographics copying emod_api/demographics/DemographicsInputDataParsers.py -> build/lib/emod_api/demographics copying emod_api/demographics/Node.py -> build/lib/emod_api/demographics copying emod_api/demographics/__main__.py -> build/lib/emod_api/demographics copying emod_api/demographics/DemographicsGenerator.py -> build/lib/emod_api/demographics copying emod_api/demographics/demographics_utils.py -> build/lib/emod_api/demographics copying emod_api/demographics/Demographics.py -> build/lib/emod_api/demographics copying emod_api/demographics/grid_construction.py -> build/lib/emod_api/demographics copying emod_api/demographics/BaseInputFile.py -> build/lib/emod_api/demographics copying emod_api/demographics/DemographicsTemplates.py -> build/lib/emod_api/demographics copying emod_api/demographics/__init__.py -> build/lib/emod_api/demographics creating build/lib/emod_api/channelreports copying emod_api/channelreports/channels.py -> build/lib/emod_api/channelreports copying emod_api/channelreports/__main__.py -> build/lib/emod_api/channelreports copying emod_api/channelreports/__init__.py -> build/lib/emod_api/channelreports creating build/lib/emod_api/migration/client copying emod_api/migration/client/client.py -> build/lib/emod_api/migration/client copying emod_api/migration/client/__init__.py -> build/lib/emod_api/migration/client creating build/lib/tests creating build/lib/tests/unittests copying tests/unittests/test_version.py -> build/lib/tests/unittests copying tests/unittests/test_schema_imports.py -> build/lib/tests/unittests copying tests/unittests/test_demographics_imports.py -> build/lib/tests/unittests copying tests/unittests/test_migration_imports.py -> build/lib/tests/unittests copying tests/unittests/test_config_imports.py -> build/lib/tests/unittests copying tests/unittests/__init__.py -> build/lib/tests/unittests creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/egg creating build/bdist.linux-x86_64/egg/emod_api creating build/bdist.linux-x86_64/egg/emod_api/schema copying build/lib/emod_api/schema/dtk_post_process_schema.py -> build/bdist.linux-x86_64/egg/emod_api/schema copying build/lib/emod_api/schema/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/schema copying build/lib/emod_api/schema/get_schema.py -> build/bdist.linux-x86_64/egg/emod_api/schema copying build/lib/emod_api/schema/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/schema creating build/bdist.linux-x86_64/egg/emod_api/tabularoutput copying build/lib/emod_api/tabularoutput/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/tabularoutput copying build/lib/emod_api/tabularoutput/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/tabularoutput creating build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/from_poi_and_binary.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/from_schema.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/dtk_post_process_adhocevents.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/from_overrides.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/default_from_schema.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/default_from_schema_no_validation.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/schema_to_config.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/dtk_pre_process_adhocevents.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/dtk_pre_process_w5ml.py -> build/bdist.linux-x86_64/egg/emod_api/config creating build/bdist.linux-x86_64/egg/emod_api/spatialreports copying build/lib/emod_api/spatialreports/spatial.py -> build/bdist.linux-x86_64/egg/emod_api/spatialreports copying build/lib/emod_api/spatialreports/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/spatialreports copying build/lib/emod_api/spatialreports/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/spatialreports creating build/bdist.linux-x86_64/egg/emod_api/weather copying build/lib/emod_api/weather/weather.py -> build/bdist.linux-x86_64/egg/emod_api/weather copying build/lib/emod_api/weather/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/weather copying build/lib/emod_api/weather/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/weather copying build/lib/emod_api/__main__.py -> build/bdist.linux-x86_64/egg/emod_api creating build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/dtkFileSupport.py -> build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/dtkFileUtility.py -> build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/dtkFileTools.py -> build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/SerializedPopulation.py -> build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/CensusAndModPop.py -> build/bdist.linux-x86_64/egg/emod_api/serialization creating build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/simple_vaccine.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/import_pressure.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/utils.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/outbreak.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/node_multiplier.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/common.py -> build/bdist.linux-x86_64/egg/emod_api/interventions creating build/bdist.linux-x86_64/egg/emod_api/migration copying build/lib/emod_api/migration/migration.py -> build/bdist.linux-x86_64/egg/emod_api/migration copying build/lib/emod_api/migration/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/migration copying build/lib/emod_api/migration/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/migration creating build/bdist.linux-x86_64/egg/emod_api/migration/client copying build/lib/emod_api/migration/client/client.py -> build/bdist.linux-x86_64/egg/emod_api/migration/client copying build/lib/emod_api/migration/client/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/migration/client creating build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/DemographicsInputDataParsers.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/Node.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/DemographicsGenerator.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/demographics_utils.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/Demographics.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/grid_construction.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/BaseInputFile.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/DemographicsTemplates.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/__init__.py -> build/bdist.linux-x86_64/egg/emod_api copying build/lib/emod_api/campaign.py -> build/bdist.linux-x86_64/egg/emod_api creating build/bdist.linux-x86_64/egg/emod_api/channelreports copying build/lib/emod_api/channelreports/channels.py -> build/bdist.linux-x86_64/egg/emod_api/channelreports copying build/lib/emod_api/channelreports/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/channelreports copying build/lib/emod_api/channelreports/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/channelreports copying build/lib/emod_api/schema_to_class.py -> build/bdist.linux-x86_64/egg/emod_api creating build/bdist.linux-x86_64/egg/examples copying build/lib/examples/spatial_report.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/weather_file.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/write_config_from_default_and_params.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/intervention_from_schema.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/default_from_schema.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/migration.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/serialized_file_mc_to_sc.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/__init__.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/some_config_i_found.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/insetchart.py -> build/bdist.linux-x86_64/egg/examples creating build/bdist.linux-x86_64/egg/tests creating build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_version.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_schema_imports.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_demographics_imports.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_migration_imports.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_config_imports.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/__init__.py -> build/bdist.linux-x86_64/egg/tests/unittests byte-compiling build/bdist.linux-x86_64/egg/emod_api/schema/dtk_post_process_schema.py to dtk_post_process_schema.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/schema/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/schema/get_schema.py to get_schema.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/schema/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/tabularoutput/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/tabularoutput/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/from_poi_and_binary.py to from_poi_and_binary.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/from_schema.py to from_schema.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/dtk_post_process_adhocevents.py to dtk_post_process_adhocevents.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/from_overrides.py to from_overrides.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/default_from_schema.py to default_from_schema.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/default_from_schema_no_validation.py to default_from_schema_no_validation.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/schema_to_config.py to schema_to_config.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/dtk_pre_process_adhocevents.py to dtk_pre_process_adhocevents.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/dtk_pre_process_w5ml.py to dtk_pre_process_w5ml.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/spatialreports/spatial.py to spatial.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/spatialreports/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/spatialreports/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/weather/weather.py to weather.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/weather/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/weather/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/dtkFileSupport.py to dtkFileSupport.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/dtkFileUtility.py to dtkFileUtility.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/dtkFileTools.py to dtkFileTools.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/SerializedPopulation.py to SerializedPopulation.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/CensusAndModPop.py to CensusAndModPop.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/simple_vaccine.py to simple_vaccine.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/import_pressure.py to import_pressure.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/utils.py to utils.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/outbreak.py to outbreak.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/node_multiplier.py to node_multiplier.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/common.py to common.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/migration/migration.py to migration.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/migration/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/migration/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/migration/client/client.py to client.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/migration/client/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/DemographicsInputDataParsers.py to DemographicsInputDataParsers.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/Node.py to Node.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/DemographicsGenerator.py to DemographicsGenerator.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/demographics_utils.py to demographics_utils.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/Demographics.py to Demographics.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/grid_construction.py to grid_construction.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/BaseInputFile.py to BaseInputFile.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/DemographicsTemplates.py to DemographicsTemplates.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/campaign.py to campaign.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/channelreports/channels.py to channels.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/channelreports/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/channelreports/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/schema_to_class.py to schema_to_class.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/spatial_report.py to spatial_report.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/weather_file.py to weather_file.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/write_config_from_default_and_params.py to write_config_from_default_and_params.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/intervention_from_schema.py to intervention_from_schema.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/default_from_schema.py to default_from_schema.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/migration.py to migration.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/serialized_file_mc_to_sc.py to serialized_file_mc_to_sc.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/some_config_i_found.py to some_config_i_found.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/insetchart.py to insetchart.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_version.py to test_version.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_schema_imports.py to test_schema_imports.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_demographics_imports.py to test_demographics_imports.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_migration_imports.py to test_migration_imports.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_config_imports.py to test_config_imports.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/__init__.py to __init__.cpython-37.pyc creating build/bdist.linux-x86_64/egg/EGG-INFO copying emod_api.egg-info/PKG-INFO -> build/bdist.linux-x86_64/egg/EGG-INFO copying emod_api.egg-info/SOURCES.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying emod_api.egg-info/dependency_links.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying emod_api.egg-info/requires.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying emod_api.egg-info/top_level.txt -> build/bdist.linux-x86_64/egg/EGG-INFO zip_safe flag not set; analyzing archive contents... emod_api.config.__pycache__.from_poi_and_binary.cpython-37: module references __file__ emod_api.serialization.__pycache__.dtkFileTools.cpython-37: module references __file__ emod_api.serialization.__pycache__.dtkFileUtility.cpython-37: module references __file__ examples.__pycache__.insetchart.cpython-37: module references __file__ examples.__pycache__.spatial_report.cpython-37: module references __file__ examples.__pycache__.weather_file.cpython-37: module references __file__ creating dist creating 'dist/emod_api-1.16.2-py3.7.egg' and adding 'build/bdist.linux-x86_64/egg' to it removing 'build/bdist.linux-x86_64/egg' (and everything under it) Processing emod_api-1.16.2-py3.7.egg creating /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/v1.16.2/lib/python3.7/site-packages/emod_api-1.16.2-py3.7.egg Extracting emod_api-1.16.2-py3.7.egg to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/v1.16.2/lib/python3.7/site-packages Adding emod-api 1.16.2 to easy-install.pth file Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/v1.16.2/lib/python3.7/site-packages/emod_api-1.16.2-py3.7.egg Processing dependencies for emod-api==1.16.2 Searching for sklearn==0.0 Best match: sklearn 0.0 Adding sklearn 0.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/v1.16.2/lib/python3.7/site-packages Searching for geographiclib==1.52 Best match: geographiclib 1.52 Adding geographiclib 1.52 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/v1.16.2/lib/python3.7/site-packages Searching for pyproj==3.2.1 Best match: pyproj 3.2.1 Adding pyproj 3.2.1 to easy-install.pth file Installing pyproj script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/v1.16.2/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/v1.16.2/lib/python3.7/site-packages Searching for Shapely==1.8.0 Best match: Shapely 1.8.0 Adding Shapely 1.8.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/v1.16.2/lib/python3.7/site-packages Searching for scipy==1.5.3 Best match: scipy 1.5.3 Adding scipy 1.5.3 to easy-install.pth file Using /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages Searching for pandas==1.1.3 Best match: pandas 1.1.3 pandas 1.1.3 is already the active version in easy-install.pth Using /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages Searching for PyYAML==6.0 Best match: PyYAML 6.0 Adding PyYAML 6.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/v1.16.2/lib/python3.7/site-packages Searching for lz4==3.1.3 Best match: lz4 3.1.3 Adding lz4 3.1.3 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/v1.16.2/lib/python3.7/site-packages Searching for numpy==1.19.2 Best match: numpy 1.19.2 numpy 1.19.2 is already the active version in easy-install.pth Installing f2py script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/v1.16.2/bin Installing f2py3 script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/v1.16.2/bin Installing f2py3.7 script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/v1.16.2/bin Using /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages Searching for scikit-learn==1.0.1 Best match: scikit-learn 1.0.1 Adding scikit-learn 1.0.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/v1.16.2/lib/python3.7/site-packages Searching for certifi==2021.10.8 Best match: certifi 2021.10.8 Adding certifi 2021.10.8 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/v1.16.2/lib/python3.7/site-packages Searching for pytz==2021.3 Best match: pytz 2021.3 Adding pytz 2021.3 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/v1.16.2/lib/python3.7/site-packages Searching for python-dateutil==2.8.1 Best match: python-dateutil 2.8.1 python-dateutil 2.8.1 is already the active version in easy-install.pth Using /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages Searching for joblib==1.1.0 Best match: joblib 1.1.0 Adding joblib 1.1.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/v1.16.2/lib/python3.7/site-packages Searching for threadpoolctl==3.0.0 Best match: threadpoolctl 3.0.0 Adding threadpoolctl 3.0.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/v1.16.2/lib/python3.7/site-packages Searching for six==1.16.0 Best match: six 1.16.0 Adding six 1.16.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/v1.16.2/lib/python3.7/site-packages Finished processing dependencies for emod-api==1.16.2 [rtd-command-info] start-time: 2021-10-25T18:07:36.360324Z, end-time: 2021-10-25T18:07:36.424305Z, duration: 0, exit-code: 0 cat docs/conf.py # -*- coding: utf-8 -*- # # Sphinx Demo docs build configuration file, created by # sphinx-quickstart on Fri Aug 26 16:52:16 2016. # # This file is execfile()d with the current directory set to its # containing dir. # # Note that not all possible configuration values are present in this # autogenerated file. # # All configuration values have a default; values that are commented out # serve to show the default. # If extensions (or modules to document with autodoc) are in another directory, # add these directories to sys.path here. If the directory is relative to the # docs root, use os.path.abspath to make it absolute, like shown here. # import os import subprocess import sys import sphinx_rtd_theme import configparser from datetime import datetime if sys.platform in ["linux", "darwin"]: subprocess.check_output(["make", "generate-api"], cwd=os.path.dirname(os.path.abspath(__file__))) else: subprocess.check_output(["make.bat", "generate-api"], cwd=os.path.dirname(os.path.abspath(__file__))) # -- General configuration ------------------------------------------------ tags.add('emodapi') # If your docs needs a minimal Sphinx version, state it here. # # needs_sphinx = '1.0' # Add any Sphinx extension module names here, as strings. They can be # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom # ones. extensions = [ 'sphinx.ext.mathjax', 'sphinx.ext.githubpages', 'sphinx.ext.autodoc', 'sphinxcontrib.napoleon', 'sphinx.ext.todo', 'plantweb.directive', 'sphinxcontrib.programoutput', 'sphinx_copybutton', 'sphinx.ext.intersphinx', 'sphinxext.remoteliteralinclude' ] plantuml = 'plantweb' autodoc_default_options = { 'member-order': 'bysource', 'members': None, 'exclude-members': '__all__' } autodoc_mock_imports = ['emod_api.dtk_tools'] napoleon_google_docstring = True # napoleon_numpy_docstring = True # Add any paths that contain templates here, relative to this directory. templates_path = ['_templates'] # The suffix(es) of source filenames. # You can specify multiple suffix as a list of string: # # source_suffix = ['.rst', '.md'] source_suffix = '.rst' # The encoding of source files. # # source_encoding = 'utf-8-sig' # The master toctree document. master_doc = 'index' # General information about the project. project = u'emod-api' copyright = f'1999 - {datetime.today().year}, Bill & Melinda Gates Foundation. All rights reserved.' author = u'Institute for Disease Modeling' # The version info for the project you're documenting, acts as replacement for # |version| and |release|, also used in various other places throughout the # built documents. # # The short X.Y version. #current_path = os.path.dirname(__file__) #version_path = os.path.join(current_path, '..', '.bumpversion.cfg') #config = configparser.ConfigParser() #config.read(version_path) #version = config['bumpversion']['current_version'] # The full version, including alpha/beta/rc tags. # release = u'1.0' # The language for content autogenerated by Sphinx. Refer to docs # for a list of supported languages. # # This is also used if you do content translation via gettext catalogs. # Usually you set "language" from the command line for these cases. language = None # There are two options for replacing |today|: either, you set today to some # non-false value, then it is used: # # today = '' # # Else, today_fmt is used as the format for a strftime call. # # today_fmt = '%B %d, %Y' # List of patterns, relative to source directory, that match files and # directories to ignore when looking for source files. # This patterns also effect to html_static_path and html_extra_path exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store'] # The reST default role (used for this markup: `text`) to use for all # documents. # # default_role = None # If true, '()' will be appended to :func: etc. cross-reference text. # # add_function_parentheses = True # If true, the current module name will be prepended to all description # unit titles (such as .. function::). # # add_module_names = True # If true, sectionauthor and moduleauthor directives will be shown in the # output. They are ignored by default. # # show_authors = False # The name of the Pygments (syntax highlighting) style to use. pygments_style = 'sphinx' # A list of ignored prefixes for module index sorting. # modindex_common_prefix = [] # If true, keep warnings as "system message" paragraphs in the built documents. # keep_warnings = False # If true, `todo` and `todoList` produce output, else they produce nothing. todo_include_todos = False # RST epilog is added to the end of every topic. Useful for replace # directives to use across the docset. rst_epilog = "\n.. include:: /variables.txt" # -- Options for HTML output ---------------------------------------------- # The theme to use for HTML and HTML Help pages. See the docs for # a list of builtin themes. # html_theme = 'sphinx_rtd_theme' # Theme options are theme-specific and customize the look and feel of a theme # further. For a list of options available for each theme, see the # docs. # # # html_theme_options = { # } # Add any paths that contain custom themes here, relative to this directory. html_theme_path = [sphinx_rtd_theme.get_html_theme_path()] # The name for this set of Sphinx documents. # " v docs" by default. # # html_title = u'Sphinx Demo v1.0' # A shorter title for the navigation bar. Default is the same as html_title. # # html_short_title = None # The name of an image file (relative to this directory) to place at the top # of the sidebar. # html_logo = "images/IDM_white.png" # The name of an image file (relative to this directory) to use as a favicon of # the docs. This file should be a Windows icon file (.ico) being 16x16 or 32x32 # pixels large. # html_favicon = "images/favicon.ico" # Add any paths that contain custom static files (such as style sheets) here, # relative to this directory. They are copied after the builtin static files, # so a file named "default.css" will overwrite the builtin "default.css". html_static_path = ['_static'] html_context = { 'css_files': [ '_static/theme_overrides.css', '_static/copy_button.css' ] } html_js_files = ['show_block_by_os.js'] # Add any extra paths that contain custom files (such as robots.txt or # .htaccess) here, relative to this directory. These files are copied # directly to the root of the docs. # # html_extra_path = [] # If not None, a 'Last updated on:' timestamp is inserted at every page # bottom, using the given strftime format. # The empty string is equivalent to '%b %d, %Y'. # # html_last_updated_fmt = None # If true, SmartyPants will be used to convert quotes and dashes to # typographically correct entities. # # html_use_smartypants = True # Custom sidebar templates, maps document names to template names. # # html_sidebars = {} # Additional templates that should be rendered to pages, maps page names to # template names. # # html_additional_pages = {} # If false, no module index is generated. # # html_domain_indices = True # If false, no index is generated. # # html_use_index = True # If true, the index is split into individual pages for each letter. # # html_split_index = False # If true, links to the reST sources are added to the pages. # html_show_sourcelink = False # If true, "Created using Sphinx" is shown in the HTML footer. Default is True. # html_show_sphinx = False # If true, "(C) Copyright ..." is shown in the HTML footer. Default is True. # # html_show_copyright = True # If true, an OpenSearch description file will be output, and all pages will # contain a tag referring to it. The value of this option must be the # base URL from which the finished HTML is served. # html_use_opensearch = 'www.idmod.org/docs/' # This is the file name suffix for HTML files (e.g. ".xhtml"). # html_file_suffix = None # Language to be used for generating the HTML full-text search index. # Sphinx supports the following languages: # 'da', 'de', 'en', 'es', 'fi', 'fr', 'hu', 'it', 'ja' # 'nl', 'no', 'pt', 'ro', 'ru', 'sv', 'tr', 'zh' # # html_search_language = 'en' # A dictionary with options for the search language support, empty by default. # 'ja' uses this config value. # 'zh' user can custom change `jieba` dictionary path. # # html_search_options = {'type': 'default'} # The name of a javascript file (relative to the configuration directory) that # implements a search results scorer. If empty, the default will be used. # # html_search_scorer = 'scorer.js' # Output file base name for HTML help builder. htmlhelp_basename = 'EMOD-API' # -- Options for LaTeX output --------------------------------------------- latex_elements = { # The paper size ('letterpaper' or 'a4paper'). # # 'papersize': 'letterpaper', # The font size ('10pt', '11pt' or '12pt'). # # 'pointsize': '10pt', # Additional stuff for the LaTeX preamble. # # 'preamble': '', # Latex figure (float) alignment # # 'figure_align': 'htbp', } # Grouping the document tree into LaTeX files. List of tuples # (source start file, target name, title, # author, documentclass [howto, manual, or own class]). latex_documents = [ (master_doc, 'emod-api-docs.tex', u'emod-api', u'Institute for Disease Modeling', 'manual'), ] # The name of an image file (relative to this directory) to place at the top of # the title page. # # latex_logo = None # For "manual" documents, if this is true, then toplevel headings are parts, # not chapters. # # latex_use_parts = False # If true, show page references after internal links. # # latex_show_pagerefs = False # If true, show URL addresses after external links. # # latex_show_urls = False # Documents to append as an appendix to all manuals. # # latex_appendices = [] # It false, will not define \strong, \code, itleref, \crossref ... but only # \sphinxstrong, ..., \sphinxtitleref, ... To help avoid clash with user added # packages. # # latex_keep_old_macro_names = True # If false, no module index is generated. # # latex_domain_indices = True # -- Options for manual page output --------------------------------------- # One entry per manual page. List of tuples # (source start file, name, description, authors, manual section). man_pages = [ (master_doc, 'emod-api-docs', u'emod-api', [author], 1) ] # If true, show URL addresses after external links. # man_show_urls = True # -- Options for Texinfo output ------------------------------------------- # Grouping the document tree into Texinfo files. List of tuples # (source start file, target name, title, author, # dir menu entry, description, category) texinfo_documents = [ (master_doc, 'emod-api-docs', u'emod-api', author, 'Institute for Disease Modeling', 'How to use emodpy for disease simulations.', 'Miscellaneous'), ] # Documents to append as an appendix to all manuals. # # texinfo_appendices = [] # If false, no module index is generated. # # texinfo_domain_indices = True # How to display URL addresses: 'footnote', 'no', or 'inline'. # # texinfo_show_urls = 'footnote' # If true, do not generate a @detailmenu in the "Top" node's menu. # # texinfo_no_detailmenu = False # Example configuration for intersphinx: refer to the Python standard library. intersphinx_mapping = {'python': ('https://docs.python.org/3', None), 'emodpy': ('https://docs.idmod.org/projects/emodpy/en/latest/', None), 'idmtools': ('https://docs.idmod.org/projects/idmtools/en/latest/', None), 'pycomps': ('https://docs.idmod.org/projects/pycomps/en/latest/', None) } ########################################################################### # auto-created readthedocs.org specific configuration # ########################################################################### # # The following code was added during an automated build on readthedocs.org # It is auto created and injected for every build. The result is based on the # conf.py.tmpl file found in the readthedocs.org codebase: # https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl # # Note: this file shouldn't rely on extra dependencies. import importlib import sys import os.path # Borrowed from six. PY3 = sys.version_info[0] == 3 string_types = str if PY3 else basestring from sphinx import version_info # Get suffix for proper linking to GitHub # This is deprecated in Sphinx 1.3+, # as each page can have its own suffix if globals().get('source_suffix', False): if isinstance(source_suffix, string_types): SUFFIX = source_suffix elif isinstance(source_suffix, (list, tuple)): # Sphinx >= 1.3 supports list/tuple to define multiple suffixes SUFFIX = source_suffix[0] elif isinstance(source_suffix, dict): # Sphinx >= 1.8 supports a mapping dictionary for multiple suffixes SUFFIX = list(source_suffix.keys())[0] # make a ``list()`` for py2/py3 compatibility else: # default to .rst SUFFIX = '.rst' else: SUFFIX = '.rst' # Add RTD Static Path. Add to the end because it overwrites previous files. if not 'html_static_path' in globals(): html_static_path = [] if os.path.exists('_static'): html_static_path.append('_static') # Add RTD Theme only if they aren't overriding it already using_rtd_theme = ( ( 'html_theme' in globals() and html_theme in ['default'] and # Allow people to bail with a hack of having an html_style 'html_style' not in globals() ) or 'html_theme' not in globals() ) if using_rtd_theme: theme = importlib.import_module('sphinx_rtd_theme') html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} if 'html_theme_path' in globals(): html_theme_path.append(theme.get_html_theme_path()) else: html_theme_path = [theme.get_html_theme_path()] if globals().get('websupport2_base_url', False): websupport2_base_url = 'https://readthedocs.com/websupport' websupport2_static_url = 'https://assets.readthedocs.com/' #Add project information to the template context. context = { 'using_theme': using_rtd_theme, 'html_theme': html_theme, 'current_version': "v1.16.2", 'version_slug': "v1.16.2", 'MEDIA_URL': "https://media.readthedocs.com/media/", 'STATIC_URL': "https://assets.readthedocs.com/", 'PRODUCTION_DOMAIN': "readthedocs.com", 'versions': [ ("latest", "/en/latest/"), ("v1.16.2", "/en/v1.16.2/"), ("v1.15.6", "/en/v1.15.6/"), ("v1.15.4", "/en/v1.15.4/"), ("v1.15.1", "/en/v1.15.1/"), ("v1.14.7", "/en/v1.14.7/"), ("v1.14.1", "/en/v1.14.1/"), ("v1.13.1", "/en/v1.13.1/"), ("v1.12.1", "/en/v1.12.1/"), ("v1.11.7", "/en/v1.11.7/"), ("v1.11.4", "/en/v1.11.4/"), ("v1.11.0", "/en/v1.11.0/"), ("v1.10.8", "/en/v1.10.8/"), ("v1.10.6", "/en/v1.10.6/"), ("v1.10.5", "/en/v1.10.5/"), ("v1.10.3", "/en/v1.10.3/"), ("v1.10.2", "/en/v1.10.2/"), ("v1.9.2", "/en/v1.9.2/"), ("v1.9.1", "/en/v1.9.1/"), ("v1.8.9", "/en/v1.8.9/"), ("v1.8.8", "/en/v1.8.8/"), ("v1.8.6", "/en/v1.8.6/"), ("v1.8.2", "/en/v1.8.2/"), ("v1.7.5", "/en/v1.7.5/"), ("v1.7.4", "/en/v1.7.4/"), ("v1.7.1", "/en/v1.7.1/"), ("v1.6.3", "/en/v1.6.3/"), ("v1.5.1", "/en/v1.5.1/"), ("v1.5.0", "/en/v1.5.0/"), ], 'downloads': [ ], 'subprojects': [ ], 'slug': 'institute-for-disease-modeling-emod-api', 'name': u'emod-api', 'rtd_language': u'en', 'programming_language': u'py', 'canonical_url': 'https://docs.idmod.org/projects/emod-api/en/latest/', 'analytics_code': 'UA-87656833-3', 'single_version': False, 'conf_py_path': '/docs/', 'api_host': 'https://readthedocs.com', 'github_user': 'InstituteforDiseaseModeling', 'proxied_api_host': '/_', 'github_repo': 'emod-api', 'github_version': 'v1.16.2', 'display_github': True, 'bitbucket_user': 'None', 'bitbucket_repo': 'None', 'bitbucket_version': 'v1.16.2', 'display_bitbucket': False, 'gitlab_user': 'None', 'gitlab_repo': 'None', 'gitlab_version': 'v1.16.2', 'display_gitlab': False, 'READTHEDOCS': True, 'using_theme': (html_theme == "default"), 'new_theme': (html_theme == "sphinx_rtd_theme"), 'source_suffix': SUFFIX, 'ad_free': False, 'docsearch_disabled': False, 'user_analytics_code': 'UA-87656833-3', 'global_analytics_code': 'UA-17997319-2', 'commit': 'f7c97c18', } # For sphinx >=1.8 we can use html_baseurl to set the canonical URL. # https://www.sphinx-doc.org/en/master/usage/configuration.html#confval-html_baseurl if version_info >= (1, 8): if not globals().get('html_baseurl'): html_baseurl = context['canonical_url'] context['canonical_url'] = None if 'html_context' in globals(): html_context.update(context) else: html_context = context # Add custom RTD extension if 'extensions' in globals(): # Insert at the beginning because it can interfere # with other extensions. # See https://github.com/rtfd/readthedocs.org/pull/4054 extensions.insert(0, "readthedocs_ext.readthedocs") else: extensions = ["readthedocs_ext.readthedocs"] # Add External version warning banner to the external version documentation if 'tag' == 'external': extensions.insert(1, "readthedocs_ext.external_version_warning") readthedocs_vcs_url = 'None' readthedocs_build_url = 'https://readthedocs.com/projects/institute-for-disease-modeling-emod-api/builds/755024/' project_language = 'en' # User's Sphinx configurations language_user = globals().get('language', None) latex_engine_user = globals().get('latex_engine', None) latex_elements_user = globals().get('latex_elements', None) # Remove this once xindy gets installed in Docker image and XINDYOPS # env variable is supported # https://github.com/rtfd/readthedocs-docker-images/pull/98 latex_use_xindy = False chinese = any([ language_user in ('zh_CN', 'zh_TW'), project_language in ('zh_CN', 'zh_TW'), ]) japanese = any([ language_user == 'ja', project_language == 'ja', ]) if chinese: latex_engine = latex_engine_user or 'xelatex' latex_elements_rtd = { 'preamble': '\\usepackage[UTF8]{ctex}\n', } latex_elements = latex_elements_user or latex_elements_rtd elif japanese: latex_engine = latex_engine_user or 'platex' # Make sure our build directory is always excluded exclude_patterns = globals().get('exclude_patterns', []) exclude_patterns.extend(['_build']) [rtd-command-info] start-time: 2021-10-25T18:07:36.539303Z, end-time: 2021-10-25T18:07:58.045888Z, duration: 21, exit-code: 0 python -m sphinx -T -W --keep-going -b html -d _build/doctrees -D language=en . _build/html Running Sphinx v3.2.1 rm: cannot remove 'emod_api_index.rst': No such file or directory rm: cannot remove 'modules.rst': No such file or directory make: [generate-api] Error 1 (ignored) loading translations [en]... done making output directory... done loading intersphinx inventory from https://docs.python.org/3/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emodpy/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/idmtools/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/pycomps/en/latest/objects.inv... building [mo]: targets for 0 po files that are out of date building [html]: targets for 54 source files that are out of date updating environment: [new config] 54 added, 0 changed, 0 removed reading sources... [ 1%] emod_api reading sources... [ 3%] emod_api.campaign reading sources... [ 5%] emod_api.channelreports reading sources... [ 7%] emod_api.channelreports.channels reading sources... [ 9%] emod_api.config reading sources... [ 11%] emod_api.config.default_from_schema reading sources... [ 12%] emod_api.config.default_from_schema_no_validation reading sources... [ 14%] emod_api.config.dtk_post_process_adhocevents reading sources... [ 16%] emod_api.config.dtk_pre_process_adhocevents reading sources... [ 18%] emod_api.config.dtk_pre_process_w5ml reading sources... [ 20%] emod_api.config.from_overrides reading sources... [ 22%] emod_api.config.from_poi_and_binary reading sources... [ 24%] emod_api.config.from_schema reading sources... [ 25%] emod_api.config.schema_to_config emod_api.config.schema_to_config is deprecated. Please use emod_api.config.from_schema. reading sources... [ 27%] emod_api.demographics reading sources... [ 29%] emod_api.demographics.BaseInputFile reading sources... [ 31%] emod_api.demographics.Demographics reading sources... [ 33%] emod_api.demographics.DemographicsGenerator reading sources... [ 35%] emod_api.demographics.DemographicsInputDataParsers reading sources... [ 37%] emod_api.demographics.DemographicsTemplates reading sources... [ 38%] emod_api.demographics.Node reading sources... [ 40%] emod_api.demographics.demographics_utils reading sources... [ 42%] emod_api.demographics.grid_construction reading sources... [ 44%] emod_api.interventions reading sources... [ 46%] emod_api.interventions.common reading sources... [ 48%] emod_api.interventions.import_pressure reading sources... [ 50%] emod_api.interventions.node_multiplier reading sources... [ 51%] emod_api.interventions.outbreak reading sources... [ 53%] emod_api.interventions.simple_vaccine reading sources... [ 55%] emod_api.interventions.utils reading sources... [ 57%] emod_api.migration reading sources... [ 59%] emod_api.migration.client reading sources... [ 61%] emod_api.migration.client.client reading sources... [ 62%] emod_api.migration.migration reading sources... [ 64%] emod_api.schema reading sources... [ 66%] emod_api.schema.dtk_post_process_schema reading sources... [ 68%] emod_api.schema.get_schema reading sources... [ 70%] emod_api.schema_to_class reading sources... [ 72%] emod_api.serialization reading sources... [ 74%] emod_api.serialization.CensusAndModPop reading sources... [ 75%] emod_api.serialization.SerializedPopulation reading sources... [ 77%] emod_api.serialization.dtkFileSupport reading sources... [ 79%] emod_api.serialization.dtkFileTools reading sources... [ 81%] emod_api.serialization.dtkFileUtility reading sources... [ 83%] emod_api.spatialreports reading sources... [ 85%] emod_api.spatialreports.spatial reading sources... [ 87%] emod_api.tabularoutput reading sources... [ 88%] emod_api.weather reading sources... [ 90%] emod_api.weather.weather reading sources... [ 92%] emod_api_index reading sources... [ 94%] faq reading sources... [ 96%] glossary reading sources... [ 98%] index reading sources... [100%] installation looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 1%] emod_api writing output... [ 3%] emod_api.campaign writing output... [ 5%] emod_api.channelreports writing output... [ 7%] emod_api.channelreports.channels writing output... [ 9%] emod_api.config writing output... [ 11%] emod_api.config.default_from_schema writing output... [ 12%] emod_api.config.default_from_schema_no_validation writing output... [ 14%] emod_api.config.dtk_post_process_adhocevents writing output... [ 16%] emod_api.config.dtk_pre_process_adhocevents writing output... [ 18%] emod_api.config.dtk_pre_process_w5ml writing output... [ 20%] emod_api.config.from_overrides writing output... [ 22%] emod_api.config.from_poi_and_binary writing output... [ 24%] emod_api.config.from_schema writing output... [ 25%] emod_api.config.schema_to_config writing output... [ 27%] emod_api.demographics writing output... [ 29%] emod_api.demographics.BaseInputFile writing output... [ 31%] emod_api.demographics.Demographics writing output... [ 33%] emod_api.demographics.DemographicsGenerator writing output... [ 35%] emod_api.demographics.DemographicsInputDataParsers writing output... [ 37%] emod_api.demographics.DemographicsTemplates writing output... [ 38%] emod_api.demographics.Node writing output... [ 40%] emod_api.demographics.demographics_utils writing output... [ 42%] emod_api.demographics.grid_construction writing output... [ 44%] emod_api.interventions writing output... [ 46%] emod_api.interventions.common writing output... [ 48%] emod_api.interventions.import_pressure writing output... [ 50%] emod_api.interventions.node_multiplier writing output... [ 51%] emod_api.interventions.outbreak writing output... [ 53%] emod_api.interventions.simple_vaccine writing output... [ 55%] emod_api.interventions.utils writing output... [ 57%] emod_api.migration writing output... [ 59%] emod_api.migration.client writing output... [ 61%] emod_api.migration.client.client writing output... [ 62%] emod_api.migration.migration writing output... [ 64%] emod_api.schema writing output... [ 66%] emod_api.schema.dtk_post_process_schema writing output... [ 68%] emod_api.schema.get_schema writing output... [ 70%] emod_api.schema_to_class writing output... [ 72%] emod_api.serialization writing output... [ 74%] emod_api.serialization.CensusAndModPop writing output... [ 75%] emod_api.serialization.SerializedPopulation writing output... [ 77%] emod_api.serialization.dtkFileSupport writing output... [ 79%] emod_api.serialization.dtkFileTools writing output... [ 81%] emod_api.serialization.dtkFileUtility writing output... [ 83%] emod_api.spatialreports writing output... [ 85%] emod_api.spatialreports.spatial writing output... [ 87%] emod_api.tabularoutput writing output... [ 88%] emod_api.weather writing output... [ 90%] emod_api.weather.weather writing output... [ 92%] emod_api_index writing output... [ 94%] faq writing output... [ 96%] glossary writing output... [ 98%] index writing output... [100%] installation generating indices... genindex py-modindexdone writing additional pages... search opensearchdone copying static files... ... done copying extra files... done dumping search index in English (code: en)... done dumping object inventory... done build succeeded. The HTML pages are in _build/html. Updating searchtools for Read the Docs search... /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/v1.16.2/lib/python3.7/importlib/_bootstrap.py:219: RuntimeWarning: numpy.ufunc size changed, may indicate binary incompatibility. Expected 192 from C header, got 216 from PyObject return f(*args, **kwds) [rtd-command-info] start-time: 2021-10-25T18:07:58.185141Z, end-time: 2021-10-25T18:08:00.423226Z, duration: 2, exit-code: 0 python -m sphinx -T -W --keep-going -b readthedocssinglehtmllocalmedia -d _build/doctrees -D language=en . _build/localmedia Running Sphinx v3.2.1 rm: cannot remove 'modules.rst': No such file or directory make: [generate-api] Error 1 (ignored) loading translations [en]... done making output directory... done loading pickled environment... done building [mo]: targets for 0 po files that are out of date building [readthedocssinglehtmllocalmedia]: all documents updating environment: 0 added, 1 changed, 0 removed reading sources... [100%] emod_api_index looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done assembling single document... installation faq emod_api_index emod_api emod_api.channelreports emod_api.channelreports.channels emod_api.config emod_api.config.default_from_schema emod_api.config.default_from_schema_no_validation emod_api.config.dtk_post_process_adhocevents emod_api.config.dtk_pre_process_adhocevents emod_api.config.dtk_pre_process_w5ml emod_api.config.from_overrides emod_api.config.from_poi_and_binary emod_api.config.from_schema emod_api.config.schema_to_config emod_api.demographics emod_api.demographics.BaseInputFile emod_api.demographics.Demographics emod_api.demographics.DemographicsGenerator emod_api.demographics.DemographicsInputDataParsers emod_api.demographics.DemographicsTemplates emod_api.demographics.Node emod_api.demographics.demographics_utils emod_api.demographics.grid_construction emod_api.interventions emod_api.interventions.common emod_api.interventions.import_pressure emod_api.interventions.node_multiplier emod_api.interventions.outbreak emod_api.interventions.simple_vaccine emod_api.interventions.utils emod_api.migration emod_api.migration.client emod_api.migration.client.client emod_api.migration.migration emod_api.schema emod_api.schema.dtk_post_process_schema emod_api.schema.get_schema emod_api.serialization emod_api.serialization.CensusAndModPop emod_api.serialization.SerializedPopulation emod_api.serialization.dtkFileSupport emod_api.serialization.dtkFileTools emod_api.serialization.dtkFileUtility emod_api.spatialreports emod_api.spatialreports.spatial emod_api.tabularoutput emod_api.weather emod_api.weather.weather emod_api.campaign emod_api.schema_to_class glossary done writing... done writing additional files... opensearchdone copying static files... ... done copying extra files... done dumping object inventory... done build succeeded. The HTML page is in _build/localmedia. Updating searchtools for Read the Docs search... [rtd-command-info] start-time: 2021-10-25T18:08:00.583689Z, end-time: 2021-10-25T18:08:02.652749Z, duration: 2, exit-code: 0 python -m sphinx -b latex -D language=en -d _build/doctrees . _build/latex Running Sphinx v3.2.1 rm: cannot remove 'modules.rst': No such file or directory make: [generate-api] Error 1 (ignored) loading translations [en]... done making output directory... done loading pickled environment... done building [mo]: targets for 0 po files that are out of date building [latex]: all documents updating environment: 0 added, 1 changed, 0 removed reading sources... [100%] emod_api_index looking for now-outdated files... none found pickling environment... done checking consistency... done processing emod-api-docs.tex... index installation faq emod_api_index emod_api emod_api.channelreports emod_api.channelreports.channels emod_api.config emod_api.config.default_from_schema emod_api.config.default_from_schema_no_validation emod_api.config.dtk_post_process_adhocevents emod_api.config.dtk_pre_process_adhocevents emod_api.config.dtk_pre_process_w5ml emod_api.config.from_overrides emod_api.config.from_poi_and_binary emod_api.config.from_schema emod_api.config.schema_to_config emod_api.demographics emod_api.demographics.BaseInputFile emod_api.demographics.Demographics emod_api.demographics.DemographicsGenerator emod_api.demographics.DemographicsInputDataParsers emod_api.demographics.DemographicsTemplates emod_api.demographics.Node emod_api.demographics.demographics_utils emod_api.demographics.grid_construction emod_api.interventions emod_api.interventions.common emod_api.interventions.import_pressure emod_api.interventions.node_multiplier emod_api.interventions.outbreak emod_api.interventions.simple_vaccine emod_api.interventions.utils emod_api.migration emod_api.migration.client emod_api.migration.client.client emod_api.migration.migration emod_api.schema emod_api.schema.dtk_post_process_schema emod_api.schema.get_schema emod_api.serialization emod_api.serialization.CensusAndModPop emod_api.serialization.SerializedPopulation emod_api.serialization.dtkFileSupport emod_api.serialization.dtkFileTools emod_api.serialization.dtkFileUtility emod_api.spatialreports emod_api.spatialreports.spatial emod_api.tabularoutput emod_api.weather emod_api.weather.weather emod_api.campaign emod_api.schema_to_class glossary resolving references... done writing... done copying TeX support files... copying TeX support files... done build succeeded. The LaTeX files are in _build/latex. Run 'make' in that directory to run these through (pdf)latex (use `make latexpdf' here to do that automatically). WARNING: Missing searchtools: /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/checkouts/v1.16.2/docs/_build/latex/_static/searchtools.js [rtd-command-info] start-time: 2021-10-25T18:08:02.975665Z, end-time: 2021-10-25T18:08:03.048564Z, duration: 0, exit-code: 0 cat latexmkrc $latex = 'latex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $pdflatex = 'pdflatex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $lualatex = 'lualatex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $xelatex = 'xelatex --no-pdf ' . $ENV{'LATEXOPTS'} . ' %O %S'; $makeindex = 'makeindex -s python.ist %O -o %D %S'; add_cus_dep( "glo", "gls", 0, "makeglo" ); sub makeglo { return system( "makeindex -s gglo.ist -o '$_[0].gls' '$_[0].glo'" ); } [rtd-command-info] start-time: 2021-10-25T18:08:03.164809Z, end-time: 2021-10-25T18:08:05.668193Z, duration: 2, exit-code: 0 latexmk -r latexmkrc -pdf -f -dvi- -ps- -jobname=institute-for-disease-modeling-emod-api -interaction=nonstopmode Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 1, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 2, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 3, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 4, chunk 1. Subroutine makeglo redefined at (eval 11) line 7, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 1, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 2, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 3, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 4, chunk 1. Latexmk: This is Latexmk, John Collins, 1 January 2015, version: 4.41. File::Glob::glob() will disappear in perl 5.30. Use File::Glob::bsd_glob() instead. at /usr/bin/latexmk line 7482. 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(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) [3] [4] Chapter 2. Underfull \hbox (badness 10000) in paragraph at lines 227--231 []\T1/ptm/m/n/10 Sure. [5] [6] Chapter 3. Underfull \hbox (badness 10000) in paragraph at lines 240--242 []\T1/ptm/m/n/10 python -m Underfull \hbox (badness 10000) in paragraph at lines 243--245 []\T1/ptm/m/n/10 python -m [7] Underfull \hbox (badness 10000) in paragraph at lines 369--369 []\T1/ptm/m/it/10 filename: [][]str[][] = None\T1/ptm/m/n/10 , [8] Overfull \hbox (73.14464pt too wide) in paragraph at lines 487--487 []\T1/ptm/m/it/10 schema_path_in\T1/ptm/m/n/10 , Overfull \hbox (27.46486pt too wide) in paragraph at lines 487--487 \T1/ptm/m/it/10 subn- Overfull \hbox (43.09444pt too wide) in paragraph at lines 487--487 \T1/ptm/m/it/10 ode_list\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 490--492 []\T1/ptm/m/n/10 config = json.load(open(^^Pdefault_config.json^^Q), ob-ject_ho ok=s2c.ReadOnlyDict) os.remove( ^^Pde- Overfull \hbox (79.14464pt too wide) in paragraph at lines 498--498 []\T1/ptm/m/it/10 path_to_schema\T1/ptm/m/n/10 , Overfull \hbox (96.61464pt too wide) in paragraph at lines 498--498 \T1/ptm/m/it/10 schema_node=True\T1/pcr/m/n/10 ) Overfull \hbox (47.68495pt too wide) in paragraph at lines 508--508 []\T1/ptm/m/it/10 config\T1/pcr/m/n/10 ) Overfull \hbox (114.96484pt too wide) in paragraph at lines 522--522 []\T1/ptm/m/it/10 config_path\T1/ptm/m/n/10 , Overfull \hbox (95.13463pt too wide) in paragraph at lines 522--522 \T1/ptm/m/it/10 set_fn\T1/pcr/m/n/10 ) Overfull \hbox (126.96484pt too wide) in paragraph at lines 548--548 []\T1/ptm/m/it/10 config_path\T1/ptm/m/n/10 , Overfull \hbox (103.63463pt too wide) in paragraph at lines 548--548 \T1/ptm/m/it/10 set_fn\T1/ptm/m/n/10 , Overfull \hbox (95.01491pt too wide) in paragraph at lines 548--548 \T1/ptm/m/it/10 con- Overfull \hbox (133.8048pt too wide) in paragraph at lines 548--548 \T1/ptm/m/it/10 fig_out_path\T1/pcr/m/n/10 ) [9] Overfull \hbox (7.52466pt too wide) in paragraph at lines 586--586 \T1/ptm/m/it/10 hoc_events\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 616--616 []\T1/ptm/m/it/10 configjson_path\T1/ptm/m/n/10 , Overfull \hbox (63.52425pt too wide) in paragraph at lines 645--645 []\T1/ptm/m/it/10 start_config_dict\T1/ptm/m/n/10 , Overfull \hbox (71.87448pt too wide) in paragraph at lines 645--645 \T1/ptm/m/it/10 poi_set_param_fn\T1/pcr/m/n/10 ) Overfull \hbox (66.30441pt too wide) in paragraph at lines 654--654 []\T1/ptm/m/it/10 start_config_path\T1/ptm/m/n/10 , Overfull \hbox (71.87448pt too wide) in paragraph at lines 654--654 \T1/ptm/m/it/10 poi_set_param_fn\T1/pcr/m/n/10 ) Overfull \hbox (18.36475pt too wide) in paragraph at lines 663--663 []\T1/ptm/m/it/10 schema_path\T1/ptm/m/n/10 , Overfull \hbox (41.87448pt too wide) in paragraph at lines 663--663 \T1/ptm/m/it/10 poi_set_param_fn\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 672--672 []\T1/ptm/m/it/10 eradication_path\T1/ptm/m/n/10 , [10] Underfull \hbox (badness 10000) in paragraph at lines 720--722 []\T1/ptm/m/n/10 builder = s2c.SchemaConfigBuilder( Underfull \hbox (badness 10000) in paragraph at lines 729--729 []\T1/ptm/m/it/10 schema_name=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 schema.json\TS1 /ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 729--729 \T1/ptm/m/it/10 model=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 GENERIC_SIM\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 729--729 \T1/ptm/m/it/10 con-fig_out=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 config.json\TS1/p tm/m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (28.28418pt too wide) in paragraph at lines 740--740 []\T1/ptm/m/it/10 schema_name=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 schema.json\TS1 /ptm/m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (11.09424pt too wide) in paragraph at lines 740--740 \T1/ptm/m/it/10 model=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 GENERIC_SIM\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 740--740 \T1/ptm/m/it/10 con- Underfull \hbox (badness 10000) in paragraph at lines 740--740 \T1/ptm/m/it/10 fig_out=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 config.json\TS1/ptm/m /it/10 '\T1/ptm/m/n/10 , LaTeX Warning: Hyper reference `emod_api.config.from_schema:emod_api.config.fro m_schema.SchemaConfigBuilder' on page 11 undefined on input line 741. 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in paragraph at lines 1282--1282 \T1/ptm/m/it/10 load_other_columns_as_attributes=False\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1282--1282 \T1/ptm/m/it/10 tional[List[[][]str[][]]] Underfull \hbox (badness 10000) in paragraph at lines 1282--1282 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ex- Underfull \hbox (badness 10000) in paragraph at lines 1282--1282 \T1/ptm/m/it/10 clude_columns: Underfull \hbox (badness 10000) in paragraph at lines 1282--1282 \T1/ptm/m/it/10 Op-tional[List[[][]str[][]]] Underfull \hbox (badness 10000) in paragraph at lines 1282--1282 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Overfull \hbox (0.89452pt too wide) in paragraph at lines 1282--1282 \T1/ptm/m/it/10 nodeid_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1282--1282 \T1/ptm/m/it/10 Op-tional[[][]str[][]] Underfull \hbox (badness 10000) in paragraph at lines 1282--1282 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lat-i- Underfull \hbox (badness 10000) in paragraph at lines 1282--1282 \T1/ptm/m/it/10 tude_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1282--1282 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 lat\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lon-gi- Underfull \hbox (badness 10000) in paragraph at lines 1282--1282 \T1/ptm/m/it/10 tude_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1282--1282 \T1/ptm/m/it/10 tion_column_name: Overfull \hbox (54.94496pt too wide) in paragraph at lines 1297--1298 []\T1/pcr/b/n/10 apply. If not specified, we use the DefaultWorldBankEquilibriu mConcern [16] Underfull \hbox (badness 10000) in paragraph at lines 1345--1345 []\T1/ptm/m/it/10 population_input_file: Underfull \hbox (badness 10000) in paragraph at lines 1345--1345 [][]\T1/ptm/m/it/10 str[][]\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-mo-graph- Underfull \hbox (badness 7851) in paragraph at lines 1345--1345 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 con-cerns: Op- Overfull \hbox (349.54115pt too wide) in paragraph at lines 1345--1345 \T1/ptm/m/it/10 tional[Union[emod_api.dtk_tools.demographics.DemographicsGenera torConcern.DemographicsGeneratorConcern, Overfull \hbox (321.49101pt too wide) in paragraph at lines 1345--1345 \T1/ptm/m/it/10 List[emod_api.dtk_tools.demographics.DemographicsGeneratorConce rn.DemographicsGeneratorConcern]]] Underfull \hbox (badness 10000) in paragraph at lines 1345--1345 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1345--1345 \T1/ptm/m/it/10 res_in_arcsec=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 custom\TS1/ptm/ m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (0.83415pt too wide) in paragraph at lines 1345--1345 \T1/ptm/m/it/10 node_id_from_lat_long=True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1345--1345 \T1/ptm/m/it/10 de-fault_population: Underfull \hbox (badness 10000) in paragraph at lines 1345--1345 [][]\T1/ptm/m/it/10 int[][] = 1000\T1/ptm/m/n/10 , Overfull \hbox (49.21327pt too wide) in paragraph at lines 1345--1345 \T1/ptm/m/it/10 load_other_columns_as_attributes=False\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1345--1345 \T1/ptm/m/it/10 in-clude_columns: Op- Underfull \hbox (badness 10000) in paragraph at lines 1345--1345 \T1/ptm/m/it/10 tional[List[[][]str[][]]] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1345--1345 \T1/ptm/m/it/10 ex-clude_columns: Op- Underfull \hbox (badness 10000) in paragraph at lines 1345--1345 \T1/ptm/m/it/10 tional[List[[][]str[][]]] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1345--1345 \T1/ptm/m/it/10 nodeid_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1345--1345 \T1/ptm/m/it/10 Op-tional[[][]str[][]] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1345--1345 \T1/ptm/m/it/10 lat-i-tude_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1345--1345 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 lat\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lon-gi- Underfull \hbox (badness 10000) in paragraph at lines 1345--1345 \T1/ptm/m/it/10 tude_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1345--1345 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 lon\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pop-u-la- Underfull \hbox (badness 6236) in paragraph at lines 1345--1345 \T1/ptm/m/it/10 tion_column_name: [][]str[][] = Overfull \hbox (54.94496pt too wide) in paragraph at lines 1360--1361 []\T1/pcr/b/n/10 apply. If not specified, we use the DefaultWorldBankEquilibriu mConcern [17] Overfull \hbox (6.3048pt too wide) in paragraph at lines 1416--1416 []\T1/ptm/m/it/10 lat\T1/ptm/m/n/10 , Overfull \hbox (13.5249pt too wide) in paragraph at lines 1416--1416 \T1/ptm/m/it/10 long\T1/ptm/m/n/10 , Overfull \hbox (115.34473pt too wide) in paragraph at lines 1416--1416 \T1/ptm/m/it/10 res=0.008333333333333333\T1/pcr/m/n/10 ) Overfull \hbox (37.09444pt too wide) in paragraph at lines 1422--1422 []\T1/ptm/m/it/10 nodelist\T1/pcr/m/n/10 ) Overfull \hbox (11.74474pt too wide) in paragraph at lines 1428--1428 []\T1/ptm/m/it/10 node_info\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1428--1428 \T1/ptm/m/it/10 De- Underfull \hbox (badness 10000) in paragraph at lines 1428--1428 \T1/ptm/m/it/10 moDf\T1/ptm/m/n/10 , Overfull \hbox (91.34473pt too wide) in paragraph at lines 1428--1428 \T1/ptm/m/it/10 res=0.008333333333333333\T1/pcr/m/n/10 ) Overfull \hbox (71.74474pt too wide) in paragraph at lines 1434--1434 []\T1/ptm/m/it/10 node_info\T1/ptm/m/n/10 , Overfull \hbox (41.2549pt too wide) in paragraph at lines 1434--1434 \T1/ptm/m/it/10 ex- Overfull \hbox (118.90427pt too wide) in paragraph at lines 1434--1434 \T1/ptm/m/it/10 tra_data_columns=[]\T1/ptm/m/n/10 , Overfull \hbox (151.34473pt too wide) in paragraph at lines 1434--1434 \T1/ptm/m/it/10 res=0.008333333333333333\T1/pcr/m/n/10 ) [18] Underfull \hbox (badness 10000) in paragraph at lines 1474--1476 []\T1/ptm/m/n/10 json ob-ject aka python dict that can be di-rectly passed to D e-mo-graph- Underfull \hbox (badness 10000) in paragraph at lines 1487--1487 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1487--1487 \T1/ptm/m/it/10 mean=0.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1499--1501 []\T1/ptm/m/n/10 json ob-ject aka python dict that can be di-rectly passed to D e-mo-graph- Underfull \hbox (badness 10000) in paragraph at lines 1512--1512 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1518--1520 []\T1/ptm/m/n/10 json ob-ject aka python dict that can be di-rectly passed to D e-mo-graph- Underfull \hbox (badness 10000) in paragraph at lines 1550--1550 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , \T1/ptm/m/it/10 low_prev\T1/ptm/m/n/10 , Underfull \hbox (badness 5091) in paragraph at lines 1550--1550 \T1/ptm/m/it/10 high_prev\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-scrip- [19] Overfull \hbox (22.30493pt too wide) in paragraph at lines 1562--1562 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Overfull \hbox (7.6847pt too wide) in paragraph at lines 1562--1562 \T1/ptm/m/it/10 set- Overfull \hbox (34.0548pt too wide) in paragraph at lines 1562--1562 \T1/ptm/m/it/10 ting=1.0\T1/pcr/m/n/10 ) Overfull \hbox (10.30493pt too wide) in paragraph at lines 1568--1568 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1568--1568 \T1/ptm/m/it/10 pro- Overfull \hbox (58.54413pt too wide) in paragraph at lines 1568--1568 \T1/ptm/m/it/10 tected_setting=0.0\T1/ptm/m/n/10 , Overfull \hbox (9.20457pt too wide) in paragraph at lines 1568--1568 \T1/ptm/m/it/10 thresh- Overfull \hbox (53.51486pt too wide) in paragraph at lines 1568--1568 \T1/ptm/m/it/10 old_age=1825.0\T1/pcr/m/n/10 ) Overfull \hbox (46.30493pt too wide) in paragraph at lines 1574--1574 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Overfull \hbox (42.23488pt too wide) in paragraph at lines 1574--1574 \T1/ptm/m/it/10 mean- Overfull \hbox (44.91478pt too wide) in paragraph at lines 1574--1574 \T1/ptm/m/it/10 AgeAt- Overfull \hbox (28.90492pt too wide) in paragraph at lines 1574--1574 \T1/ptm/m/it/10 In- Overfull \hbox (32.23474pt too wide) in paragraph at lines 1574--1574 \T1/ptm/m/it/10 fec- Overfull \hbox (58.0548pt too wide) in paragraph at lines 1574--1574 \T1/ptm/m/it/10 tion=2.5\T1/pcr/m/n/10 ) Overfull \hbox (55.80493pt too wide) in paragraph at lines 1580--1580 []\T1/ptm/m/it/10 demog\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1586--1586 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1586--1586 \T1/ptm/m/it/10 age_bins\T1/ptm/m/n/10 , Overfull \hbox (25.80493pt too wide) in paragraph at lines 1608--1608 []\T1/ptm/m/it/10 demog\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1626--1627 []\T1/pcr/b/n/10 "15-19", etc. up to "45-49", and a column named "Years" with [20] LaTeX Warning: Hyper reference `emod_api.demographics.Node:emod_api.demographic s.Node.Node.IndividualAttributes' on page 21 undefined on input line 1695. LaTeX Warning: Hyper reference `emod_api.demographics.Node:emod_api.demographic s.Node.Node.IndividualProperties' on page 21 undefined on input line 1695. LaTeX Warning: Hyper reference `emod_api.demographics.Node:emod_api.demographic s.Node.Node.NodeAttributes' on page 21 undefined on input line 1695. Overfull \hbox (12.76291pt too wide) in paragraph at lines 1695--1695 \T1/ptm/m/n/10 emod_api.demographics.Node.Node.IndividualAttributes Underfull \hbox (badness 10000) in paragraph at lines 1695--1695 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in-di-vid-ual_properties : Overfull \hbox (13.51294pt too wide) in paragraph at lines 1695--1695 \T1/ptm/m/n/10 emod_api.demographics.Node.Node.IndividualProperties Underfull \hbox (badness 10000) in paragraph at lines 1695--1695 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 node_attributes: Underfull \hbox (badness 10000) in paragraph at lines 1695--1695 \T1/ptm/m/n/10 emod_api.demographics.Node.Node.NodeAttributes LaTeX Warning: Hyper reference `emod_api.demographics.Node:emod_api.demographic s.Node.Updateable' on page 21 undefined on input line 1696. LaTeX Warning: Hyper reference `emod_api.demographics.Node:emod_api.demographic s.Node.Updateable' on page 21 undefined on input line 1713. LaTeX Warning: Hyper reference `emod_api.demographics.Node:emod_api.demographic s.Node.Updateable' on page 21 undefined on input line 1727. Underfull \hbox (badness 10000) in paragraph at lines 1757--1757 []\T1/ptm/m/it/10 age_distribution_flag=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ag e_distribution1=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1757--1757 \T1/ptm/m/it/10 age_distribution2=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 age_dist ribution=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1757--1757 \T1/ptm/m/it/10 preva-lence_distribution_flag=None\T1/ptm/m/n/10 , \T1/ptm/m/it /10 preva- Underfull \hbox (badness 10000) in paragraph at lines 1757--1757 \T1/ptm/m/it/10 im-mu-nity_distribution2=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 r isk_distribution_flag=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1757--1757 \T1/ptm/m/it/10 risk_distribution1=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 risk_di stribution2=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 mi- Underfull \hbox (badness 10000) in paragraph at lines 1757--1757 \T1/ptm/m/it/10 gra-tion_heterogeneity_distribution_flag=None\T1/ptm/m/n/10 , \ T1/ptm/m/it/10 mi- Underfull \hbox (badness 10000) in paragraph at lines 1757--1757 \T1/ptm/m/it/10 gra-tion_heterogeneity_distribution1=None\T1/ptm/m/n/10 , \T1/p tm/m/it/10 mi-gra- Underfull \hbox (badness 10000) in paragraph at lines 1757--1757 \T1/ptm/m/it/10 tion_heterogeneity_distribution2=None\T1/ptm/m/n/10 , \T1/ptm/m /it/10 mor-tal- LaTeX Warning: Hyper reference `emod_api.demographics.Node:emod_api.demographic s.Node.Updateable' on page 21 undefined on input line 1758. Underfull \hbox (badness 7256) in paragraph at lines 1762--1762 []\T1/ptm/m/it/10 distribution_values: List[[][]float[][]] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- LaTeX Warning: Hyper reference `emod_api.demographics.Node:emod_api.demographic s.Node.Updateable' on page 21 undefined on input line 1763. [21] Underfull \hbox (badness 10000) in paragraph at lines 1776--1776 []\T1/ptm/m/it/10 distribution_values=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-s ult_scale_factor=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- LaTeX Warning: Hyper reference `emod_api.demographics.Node:emod_api.demographic s.Node.Updateable' on page 22 undefined on input line 1777. Underfull \hbox (badness 10000) in paragraph at lines 1796--1796 []\T1/ptm/m/it/10 axis_names: List[[][]str[][]] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1796--1796 \T1/ptm/m/it/10 axis_scale_factor: List[[][]float[][]] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1796--1796 \T1/ptm/m/it/10 axis_units=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 num_distributio n_axes=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1796--1796 \T1/ptm/m/it/10 num_population_axes=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1796--1796 \T1/ptm/m/it/10 num_population_groups=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pop- u-la- Underfull \hbox (badness 10000) in paragraph at lines 1796--1796 \T1/ptm/m/it/10 tion_groups=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-sult_scale_ factor=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- LaTeX Warning: Hyper reference `emod_api.demographics.Node:emod_api.demographic s.Node.Updateable' on page 22 undefined on input line 1797. LaTeX Warning: Hyper reference `emod_api.demographics.Node:emod_api.demographic s.Node.Updateable' on page 22 undefined on input line 1832. LaTeX Warning: Hyper reference `emod_api.demographics.Node:emod_api.demographic s.Node.Node.IndividualAttributes' on page 22 undefined on input line 1903. Overfull \hbox (26.9222pt too wide) in paragraph at lines 1903--1903 []\T1/ptm/m/it/10 ind_attribute: \T1/ptm/m/n/10 emod_api.demographics.Node.Node .IndividualAttributes\T1/pcr/m/n/10 ) LaTeX Warning: Hyper reference `emod_api.demographics.Node:emod_api.demographic s.Node.Node.IndividualProperties' on page 22 undefined on input line 1909. Overfull \hbox (34.08215pt too wide) in paragraph at lines 1909--1909 []\T1/ptm/m/it/10 ind_properties: \T1/ptm/m/n/10 emod_api.demographics.Node.Nod e.IndividualProperties\T1/pcr/m/n/10 ) LaTeX Warning: Hyper reference `emod_api.demographics.Node:emod_api.demographic s.Node.Node.NodeAttributes' on page 22 undefined on input line 1915. [22] LaTeX Warning: Hyper reference `emod_api.demographics.Node:emod_api.demographic s.Node.Node' on page 23 undefined on input line 1925. Overfull \hbox (22.9045pt too wide) in paragraph at lines 1940--1940 []\T1/ptm/m/it/10 nodeid\T1/ptm/m/n/10 , \T1/ptm/m/it/10 res_in_deg=0.041666666 666666664\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1946--1946 []\T1/ptm/m/it/10 lat\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lon\T1/ptm/m/n/10 , Overfull \hbox (9.16464pt too wide) in paragraph at lines 1946--1946 \T1/ptm/m/it/10 res_in_deg=0.041666666666666664\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1952--1952 []\T1/ptm/m/it/10 lat\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lon\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1981--1982 []\T1/pcr/b/n/10 distribution \T1/ptm/m/n/10 ^^U The se-lected dis-tri-bu-tion (need to come from Underfull \hbox (badness 10000) in paragraph at lines 2001--2001 []\T1/ptm/m/it/10 filename\T1/ptm/m/n/10 , \T1/ptm/m/it/10 dis-tri-bu-tion\T1/p tm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2002--2003 \T1/ptm/m/n/10 Set the \T1/pcr/m/n/10 ImmunityDistributionFlag\T1/ptm/m/n/10 , \T1/pcr/m/n/10 ImmunityDistribution1 \T1/ptm/m/n/10 and Underfull \hbox (badness 10000) in paragraph at lines 2029--2029 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2029--2029 \T1/ptm/m/it/10 fn\T1/ptm/m/n/10 , [23] Underfull \hbox (badness 10000) in paragraph at lines 2099--2099 []\T1/ptm/m/it/10 cb\T1/ptm/m/n/10 , Overfull \hbox (28.70406pt too wide) in paragraph at lines 2099--2099 \T1/ptm/m/it/10 use_existing=False\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 2125--2125 []\T1/ptm/m/it/10 cb\T1/ptm/m/n/10 , Overfull \hbox (34.70406pt too wide) in paragraph at lines 2125--2125 \T1/ptm/m/it/10 use_existing=False\T1/pcr/m/n/10 ) LaTeX Warning: Hyper reference `emod_api.demographics.demographics_utils:emod_a pi.demographics.demographics_utils.set_static_demographics' on page 24 undefine d on input line 2126. [24] Underfull \hbox (badness 10000) in paragraph at lines 2197--2197 []\T1/ptm/m/it/10 point\T1/ptm/m/n/10 , Overfull \hbox (37.41425pt too wide) in paragraph at lines 2197--2197 \T1/ptm/m/it/10 grid_id_2_cell_id\T1/ptm/m/n/10 , LaTeX Warning: Hyper reference `emod_api.schema_to_class:emod_api.schema_to_cla ss.ReadOnlyDict' on page 25 undefined on input line 2229. Underfull \hbox (badness 10000) in paragraph at lines 2238--2238 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Event_Trigger\T1/ptm/m/n /10 , Overfull \hbox (73.22345pt too wide) in paragraph at lines 2238--2238 \T1/ptm/m/it/10 Node_Selection_Type=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 DISTANCE_ ONLY\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (57.50374pt too wide) in paragraph at lines 2238--2238 \T1/ptm/m/it/10 Max_Distance_To_Other_Nodes_Km=- [25] LaTeX Warning: Hyper reference `emod_api.schema_to_class:emod_api.schema_to_cla ss.ReadOnlyDict' on page 26 undefined on input line 2264. 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(rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc}< /usr/share/texlive/texmf-dist/fonts/type1/urw/courier/ucrr8a.pfb>< /usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmri8a.pfb> Output written on institute-for-disease-modeling-emod-api.pdf (53 pages, 246122 bytes). Transcript written on institute-for-disease-modeling-emod-api.log. Latexmk: Index file 'institute-for-disease-modeling-emod-api.idx' was written Latexmk: Missing input file: 'institute-for-disease-modeling-emod-api.ind' from line 'No file institute-for-disease-modeling-emod-api.ind.' Latexmk: References changed. Latexmk: References changed. Latexmk: Log file says output to 'institute-for-disease-modeling-emod-api.pdf' Latexmk: Log file says output to 'institute-for-disease-modeling-emod-api.pdf' Latexmk: List of undefined refs and citations: Reference `emod_api.campaign:module-emod_api.campaign' on page 49 undefined on input line 4372 Reference `emod_api.channelreports.channels:module-emod_api.channelreports.channels' on page 49 undefined on input line 4374 Reference `emod_api.channelreports:module-emod_api.channelreports' on page 49 undefined on input line 4373 Reference `emod_api.config.default_from_schema:module-emod_api.config.default_from_schema' on page 49 undefined on input line 4376 Reference `emod_api.config.default_from_schema_no_validation:module-emod_api.config.default_from_schema_no_validation' on page 49 undefined on input line 4377 Reference `emod_api.config.dtk_post_process_adhocevents:module-emod_api.config.dtk_post_process_adhocevents' on page 49 undefined on input line 4378 Reference 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`emod_api.demographics.Demographics:module-emod_api.demographics.Demographics' on page 49 undefined on input line 4387 Reference `emod_api.demographics.DemographicsGenerator:module-emod_api.demographics.DemographicsGenerator' on page 49 undefined on input line 4389 Reference `emod_api.demographics.DemographicsInputDataParsers:module-emod_api.demographics.DemographicsInputDataParsers' on page 49 undefined on input line 4390 Reference `emod_api.demographics.DemographicsTemplates:module-emod_api.demographics.DemographicsTemplates' on page 49 undefined on input line 4391 Reference `emod_api.demographics.Node:module-emod_api.demographics.Node' on page 49 undefined on input line 4393 Reference `emod_api.demographics.demographics_utils:module-emod_api.demographics.demographics_utils' on page 49 undefined on input line 4388 Reference `emod_api.demographics.grid_construction:module-emod_api.demographics.grid_construction' on page 49 undefined on input line 4392 Reference `emod_api.demographics:module-emod_api.demographics' on page 49 undefined on input line 4385 Reference `emod_api.interventions.common:module-emod_api.interventions.common' on page 49 undefined on input line 4395 Reference `emod_api.interventions.import_pressure:module-emod_api.interventions.import_pressure' on page 49 undefined on input line 4396 Reference `emod_api.interventions.node_multiplier:module-emod_api.interventions.node_multiplier' on page 49 undefined on input line 4397 Reference `emod_api.interventions.outbreak:module-emod_api.interventions.outbreak' on page 49 undefined on input line 4398 Reference `emod_api.interventions.simple_vaccine:module-emod_api.interventions.simple_vaccine' on page 49 undefined on input line 4399 Reference `emod_api.interventions.utils:module-emod_api.interventions.utils' on page 49 undefined on input line 4400 Reference `emod_api.interventions:module-emod_api.interventions' on page 49 undefined on input line 4394 Reference `emod_api.migration.client.client:module-emod_api.migration.client.client' on page 49 undefined on input line 4403 Reference `emod_api.migration.client:module-emod_api.migration.client' on page 49 undefined on input line 4402 Reference `emod_api.migration.migration:module-emod_api.migration.migration' on page 49 undefined on input line 4404 Reference `emod_api.migration:module-emod_api.migration' on page 49 undefined on input line 4401 Reference `emod_api.schema.dtk_post_process_schema:module-emod_api.schema.dtk_post_process_schema' on page 49 undefined on input line 4406 Reference `emod_api.schema.get_schema:module-emod_api.schema.get_schema' on page 49 undefined on input line 4407 Reference `emod_api.schema:module-emod_api.schema' on page 49 undefined on input line 4405 Reference `emod_api.schema_to_class:module-emod_api.schema_to_class' on page 49 undefined on input line 4408 Reference `emod_api.serialization.CensusAndModPop:module-emod_api.serialization.CensusAndModPop' on page 49 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input line 4417 Reference `emod_api.weather.weather:module-emod_api.weather.weather' on page 49 undefined on input line 4419 Reference `emod_api.weather:module-emod_api.weather' on page 49 undefined on input line 4418 Reference `emod_api:module-emod_api' on page 49 undefined on input line 4371 Latexmk: Summary of warnings: Latex failed to resolve 49 reference(s) Rule 'makeindex institute-for-disease-modeling-emod-api.idx': File changes, etc: Non-existent destination files: 'institute-for-disease-modeling-emod-api.ind' ------------ Run number 1 of rule 'makeindex institute-for-disease-modeling-emod-api.idx' ------------ ------------ Running 'makeindex -s python.ist -o "institute-for-disease-modeling-emod-api.ind" "institute-for-disease-modeling-emod-api.idx"' ------------ Latexmk: applying rule 'makeindex institute-for-disease-modeling-emod-api.idx'... This is makeindex, version 2.15 [TeX Live 2017] (kpathsea + Thai support). Scanning style file ./python.ist.......done (7 attributes redefined, 0 ignored). Scanning input file institute-for-disease-modeling-emod-api.idx....done (462 entries accepted, 0 rejected). Sorting entries......done (4437 comparisons). Generating output file institute-for-disease-modeling-emod-api.ind....done (884 lines written, 0 warnings). Output written in institute-for-disease-modeling-emod-api.ind. Transcript written in institute-for-disease-modeling-emod-api.ilg. Rule 'pdflatex': File changes, etc: Changed files, or newly in use since previous run(s): 'institute-for-disease-modeling-emod-api.aux' 'institute-for-disease-modeling-emod-api.ind' ------------ Run number 2 of rule 'pdflatex' ------------ ------------ Running 'pdflatex -interaction=nonstopmode -recorder --jobname="institute-for-disease-modeling-emod-api" "emod-api-docs.tex"' ------------ Latexmk: applying rule 'pdflatex'... 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(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) (./institute-for-disease-modeling-emod-api.out) (./institute-for-disease-modeling-emod-api.out) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd)<><><><> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}] [2] (./institute-for-disease-modeling-emod-api.toc) [1] [2] [1] [2] Chapter 1. (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) [3] [4] Chapter 2. Underfull \hbox (badness 10000) in paragraph at lines 227--231 []\T1/ptm/m/n/10 Sure. [5] [6] Chapter 3. Underfull \hbox (badness 10000) in paragraph at lines 240--242 []\T1/ptm/m/n/10 python -m Underfull \hbox (badness 10000) in paragraph at lines 243--245 []\T1/ptm/m/n/10 python -m [7] Underfull \hbox (badness 10000) in paragraph at lines 369--369 []\T1/ptm/m/it/10 filename: [][]str[][] = None\T1/ptm/m/n/10 , [8] Overfull \hbox (73.14464pt too wide) in paragraph at lines 487--487 []\T1/ptm/m/it/10 schema_path_in\T1/ptm/m/n/10 , Overfull \hbox (27.46486pt too wide) in paragraph at lines 487--487 \T1/ptm/m/it/10 subn- Overfull \hbox (43.09444pt too wide) in paragraph at lines 487--487 \T1/ptm/m/it/10 ode_list\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 490--492 []\T1/ptm/m/n/10 config = json.load(open(^^Pdefault_config.json^^Q), ob-ject_ho ok=s2c.ReadOnlyDict) os.remove( ^^Pde- Overfull \hbox (79.14464pt too wide) in paragraph at lines 498--498 []\T1/ptm/m/it/10 path_to_schema\T1/ptm/m/n/10 , Overfull \hbox (96.61464pt too wide) in paragraph at lines 498--498 \T1/ptm/m/it/10 schema_node=True\T1/pcr/m/n/10 ) Overfull \hbox (47.68495pt too wide) in paragraph at lines 508--508 []\T1/ptm/m/it/10 config\T1/pcr/m/n/10 ) Overfull \hbox (114.96484pt too wide) in paragraph at lines 522--522 []\T1/ptm/m/it/10 config_path\T1/ptm/m/n/10 , Overfull \hbox (95.13463pt too wide) in paragraph at lines 522--522 \T1/ptm/m/it/10 set_fn\T1/pcr/m/n/10 ) Overfull \hbox (126.96484pt too wide) in paragraph at lines 548--548 []\T1/ptm/m/it/10 config_path\T1/ptm/m/n/10 , Overfull \hbox (103.63463pt too wide) in paragraph at lines 548--548 \T1/ptm/m/it/10 set_fn\T1/ptm/m/n/10 , Overfull \hbox (95.01491pt too wide) in paragraph at lines 548--548 \T1/ptm/m/it/10 con- Overfull \hbox (133.8048pt too wide) in paragraph at lines 548--548 \T1/ptm/m/it/10 fig_out_path\T1/pcr/m/n/10 ) [9] Overfull \hbox (7.52466pt too wide) in paragraph at lines 586--586 \T1/ptm/m/it/10 hoc_events\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 616--616 []\T1/ptm/m/it/10 configjson_path\T1/ptm/m/n/10 , Overfull \hbox (63.52425pt too wide) in paragraph at lines 645--645 []\T1/ptm/m/it/10 start_config_dict\T1/ptm/m/n/10 , Overfull \hbox (71.87448pt too wide) in paragraph at lines 645--645 \T1/ptm/m/it/10 poi_set_param_fn\T1/pcr/m/n/10 ) Overfull \hbox (66.30441pt too wide) in paragraph at lines 654--654 []\T1/ptm/m/it/10 start_config_path\T1/ptm/m/n/10 , Overfull \hbox (71.87448pt too wide) in paragraph at lines 654--654 \T1/ptm/m/it/10 poi_set_param_fn\T1/pcr/m/n/10 ) Overfull \hbox (18.36475pt too wide) in paragraph at lines 663--663 []\T1/ptm/m/it/10 schema_path\T1/ptm/m/n/10 , Overfull \hbox (41.87448pt too wide) in paragraph at lines 663--663 \T1/ptm/m/it/10 poi_set_param_fn\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 672--672 []\T1/ptm/m/it/10 eradication_path\T1/ptm/m/n/10 , [10] Underfull \hbox (badness 10000) in paragraph at lines 720--722 []\T1/ptm/m/n/10 builder = s2c.SchemaConfigBuilder( Underfull \hbox (badness 10000) in paragraph at lines 729--729 []\T1/ptm/m/it/10 schema_name=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 schema.json\TS1 /ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 729--729 \T1/ptm/m/it/10 model=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 GENERIC_SIM\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 729--729 \T1/ptm/m/it/10 con-fig_out=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 config.json\TS1/p tm/m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (28.28418pt too wide) in paragraph at lines 740--740 []\T1/ptm/m/it/10 schema_name=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 schema.json\TS1 /ptm/m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (11.09424pt too wide) in paragraph at lines 740--740 \T1/ptm/m/it/10 model=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 GENERIC_SIM\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 740--740 \T1/ptm/m/it/10 con- Underfull \hbox (badness 10000) in paragraph at lines 740--740 \T1/ptm/m/it/10 fig_out=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 config.json\TS1/ptm/m /it/10 '\T1/ptm/m/n/10 , [11] Underfull \hbox (badness 10000) in paragraph at lines 783--783 \T1/ptm/m/it/10 name=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Erewhon\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 807--807 []\T1/ptm/m/it/10 tot_pop\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 807--807 \T1/ptm/m/it/10 num_nodes\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 816--816 []\T1/ptm/m/it/10 tot_pop=1000000\T1/ptm/m/n/10 , \T1/ptm/m/it/10 num_nodes=100 \T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 833--833 []\T1/ptm/m/it/10 pop_filename_in\T1/ptm/m/n/10 , Overfull \hbox (28.44351pt too wide) in paragraph at lines 833--833 \T1/ptm/m/it/10 pop_filename_out=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 spatial_grid ded_pop_dir\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 839--839 []\T1/ptm/m/it/10 nodes\T1/ptm/m/n/10 , \T1/ptm/m/it/10 idref=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Gridded Underfull \hbox (badness 10000) in paragraph at lines 839--839 \T1/ptm/m/it/10 world grump2.5arcmin\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , [12] Underfull \hbox (badness 10000) in paragraph at lines 1016--1016 []\T1/ptm/m/it/10 CrudeBirthRate=0.04\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Crude-Mor - [13] Underfull \hbox (badness 10000) in paragraph at lines 1105--1105 []\T1/ptm/m/it/10 file_male\T1/ptm/m/n/10 , \T1/ptm/m/it/10 file_female\T1/ptm/ m/n/10 , \T1/ptm/m/it/10 in-ter-val_fit=[1970, 1980]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1117--1117 []\T1/ptm/m/it/10 nodes=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1117--1117 \T1/ptm/m/it/10 meta_data: [][]dict[][] Overfull \hbox (7.52411pt too wide) in paragraph at lines 1117--1117 \T1/ptm/m/it/10 ual_attributes=None\T1/ptm/m/n/10 , Overfull \hbox (14.18416pt too wide) in paragraph at lines 1117--1117 \T1/ptm/m/it/10 node_attributes=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1117--1117 \T1/ptm/m/it/10 mor-tal- Overfull \hbox (16.5839pt too wide) in paragraph at lines 1117--1117 \T1/ptm/m/it/10 ity_distribution=None\T1/pcr/m/n/10 ) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pcr.fd) Overfull \hbox (18.60422pt too wide) in paragraph at lines 1178--1178 []\T1/ptm/m/it/10 res_in_arcsec\T1/pcr/m/n/10 ) [14] Overfull \hbox (13.07484pt too wide) in paragraph at lines 1197--1197 []\T1/ptm/m/it/10 nodes\T1/ptm/m/n/10 , Overfull \hbox (5.01491pt too wide) in paragraph at lines 1197--1197 \T1/ptm/m/it/10 con- Overfull \hbox (12.23463pt too wide) in paragraph at lines 1197--1197 \T1/ptm/m/it/10 cerns: Overfull \hbox (2.79494pt too wide) in paragraph at lines 1197--1197 \T1/ptm/m/it/10 Op- Overfull \hbox (457.54115pt too wide) in paragraph at lines 1197--1197 \T1/ptm/m/it/10 tional[Union[emod_api.dtk_tools.demographics.DemographicsGenera torConcern.DemographicsGeneratorConcern, Overfull \hbox (429.49101pt too wide) in paragraph at lines 1197--1197 \T1/ptm/m/it/10 List[emod_api.dtk_tools.demographics.DemographicsGeneratorConce rn.DemographicsGeneratorConcern]]] Underfull \hbox (badness 10000) in paragraph at lines 1197--1197 \T1/ptm/m/it/10 = Overfull \hbox (10.85487pt too wide) in paragraph at lines 1197--1197 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (84.4637pt too wide) in paragraph at lines 1197--1197 \T1/ptm/m/it/10 res_in_arcsec=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 custom\TS1/ptm/ m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (115.46402pt too wide) in paragraph at lines 1197--1197 \T1/ptm/m/it/10 node_id_from_lat_long=False\T1/pcr/m/n/10 ) [15] Underfull \hbox (badness 10000) in paragraph at lines 1282--1282 []\T1/ptm/m/it/10 df\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-mo-graph- Underfull \hbox (badness 10000) in paragraph at lines 1282--1282 \T1/ptm/m/it/10 ics_filename: Op- Underfull \hbox (badness 10000) in paragraph at lines 1282--1282 \T1/ptm/m/it/10 tional[[][]str[][]] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1282--1282 \T1/ptm/m/it/10 con-cerns: Op- Overfull \hbox (379.54115pt too wide) in paragraph at lines 1282--1282 \T1/ptm/m/it/10 tional[Union[emod_api.dtk_tools.demographics.DemographicsGenera torConcern.DemographicsGeneratorConcern, Overfull \hbox (351.49101pt too wide) in paragraph at lines 1282--1282 \T1/ptm/m/it/10 List[emod_api.dtk_tools.demographics.DemographicsGeneratorConce rn.DemographicsGeneratorConcern]]] Underfull \hbox (badness 10000) in paragraph at lines 1282--1282 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Overfull \hbox (6.4637pt too wide) in paragraph at lines 1282--1282 \T1/ptm/m/it/10 res_in_arcsec=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 custom\TS1/ptm/ m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (30.83415pt too wide) in paragraph at lines 1282--1282 \T1/ptm/m/it/10 node_id_from_lat_long=True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1282--1282 \T1/ptm/m/it/10 de-fault_population: Underfull \hbox (badness 10000) in paragraph at lines 1282--1282 [][]\T1/ptm/m/it/10 int[][] = 1000\T1/ptm/m/n/10 , Overfull \hbox (79.21327pt too wide) in paragraph at lines 1282--1282 \T1/ptm/m/it/10 load_other_columns_as_attributes=False\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1282--1282 \T1/ptm/m/it/10 tional[List[[][]str[][]]] Underfull \hbox (badness 10000) in paragraph at lines 1282--1282 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ex- Underfull \hbox (badness 10000) in paragraph at lines 1282--1282 \T1/ptm/m/it/10 clude_columns: Underfull \hbox (badness 10000) in paragraph at lines 1282--1282 \T1/ptm/m/it/10 Op-tional[List[[][]str[][]]] Underfull \hbox (badness 10000) in paragraph at lines 1282--1282 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Overfull \hbox (0.89452pt too wide) in paragraph at lines 1282--1282 \T1/ptm/m/it/10 nodeid_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1282--1282 \T1/ptm/m/it/10 Op-tional[[][]str[][]] Underfull \hbox (badness 10000) in paragraph at lines 1282--1282 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lat-i- Underfull \hbox (badness 10000) in paragraph at lines 1282--1282 \T1/ptm/m/it/10 tude_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1282--1282 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 lat\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lon-gi- Underfull \hbox (badness 10000) in paragraph at lines 1282--1282 \T1/ptm/m/it/10 tude_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1282--1282 \T1/ptm/m/it/10 tion_column_name: Overfull \hbox (54.94496pt too wide) in paragraph at lines 1297--1298 []\T1/pcr/b/n/10 apply. If not specified, we use the DefaultWorldBankEquilibriu mConcern [16] Underfull \hbox (badness 10000) in paragraph at lines 1345--1345 []\T1/ptm/m/it/10 population_input_file: Underfull \hbox (badness 10000) in paragraph at lines 1345--1345 [][]\T1/ptm/m/it/10 str[][]\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-mo-graph- Underfull \hbox (badness 7851) in paragraph at lines 1345--1345 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 con-cerns: Op- Overfull \hbox (349.54115pt too wide) in paragraph at lines 1345--1345 \T1/ptm/m/it/10 tional[Union[emod_api.dtk_tools.demographics.DemographicsGenera torConcern.DemographicsGeneratorConcern, Overfull \hbox (321.49101pt too wide) in paragraph at lines 1345--1345 \T1/ptm/m/it/10 List[emod_api.dtk_tools.demographics.DemographicsGeneratorConce rn.DemographicsGeneratorConcern]]] Underfull \hbox (badness 10000) in paragraph at lines 1345--1345 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1345--1345 \T1/ptm/m/it/10 res_in_arcsec=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 custom\TS1/ptm/ m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (0.83415pt too wide) in paragraph at lines 1345--1345 \T1/ptm/m/it/10 node_id_from_lat_long=True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1345--1345 \T1/ptm/m/it/10 de-fault_population: Underfull \hbox (badness 10000) in paragraph at lines 1345--1345 [][]\T1/ptm/m/it/10 int[][] = 1000\T1/ptm/m/n/10 , Overfull \hbox (49.21327pt too wide) in paragraph at lines 1345--1345 \T1/ptm/m/it/10 load_other_columns_as_attributes=False\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1345--1345 \T1/ptm/m/it/10 in-clude_columns: Op- Underfull \hbox (badness 10000) in paragraph at lines 1345--1345 \T1/ptm/m/it/10 tional[List[[][]str[][]]] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1345--1345 \T1/ptm/m/it/10 ex-clude_columns: Op- Underfull \hbox (badness 10000) in paragraph at lines 1345--1345 \T1/ptm/m/it/10 tional[List[[][]str[][]]] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1345--1345 \T1/ptm/m/it/10 nodeid_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1345--1345 \T1/ptm/m/it/10 Op-tional[[][]str[][]] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1345--1345 \T1/ptm/m/it/10 lat-i-tude_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1345--1345 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 lat\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lon-gi- Underfull \hbox (badness 10000) in paragraph at lines 1345--1345 \T1/ptm/m/it/10 tude_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1345--1345 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 lon\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pop-u-la- Underfull \hbox (badness 6236) in paragraph at lines 1345--1345 \T1/ptm/m/it/10 tion_column_name: [][]str[][] = Overfull \hbox (54.94496pt too wide) in paragraph at lines 1360--1361 []\T1/pcr/b/n/10 apply. If not specified, we use the DefaultWorldBankEquilibriu mConcern [17] Overfull \hbox (6.3048pt too wide) in paragraph at lines 1416--1416 []\T1/ptm/m/it/10 lat\T1/ptm/m/n/10 , Overfull \hbox (13.5249pt too wide) in paragraph at lines 1416--1416 \T1/ptm/m/it/10 long\T1/ptm/m/n/10 , Overfull \hbox (115.34473pt too wide) in paragraph at lines 1416--1416 \T1/ptm/m/it/10 res=0.008333333333333333\T1/pcr/m/n/10 ) Overfull \hbox (37.09444pt too wide) in paragraph at lines 1422--1422 []\T1/ptm/m/it/10 nodelist\T1/pcr/m/n/10 ) Overfull \hbox (11.74474pt too wide) in paragraph at lines 1428--1428 []\T1/ptm/m/it/10 node_info\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1428--1428 \T1/ptm/m/it/10 De- Underfull \hbox (badness 10000) in paragraph at lines 1428--1428 \T1/ptm/m/it/10 moDf\T1/ptm/m/n/10 , Overfull \hbox (91.34473pt too wide) in paragraph at lines 1428--1428 \T1/ptm/m/it/10 res=0.008333333333333333\T1/pcr/m/n/10 ) Overfull \hbox (71.74474pt too wide) in paragraph at lines 1434--1434 []\T1/ptm/m/it/10 node_info\T1/ptm/m/n/10 , Overfull \hbox (41.2549pt too wide) in paragraph at lines 1434--1434 \T1/ptm/m/it/10 ex- Overfull \hbox (118.90427pt too wide) in paragraph at lines 1434--1434 \T1/ptm/m/it/10 tra_data_columns=[]\T1/ptm/m/n/10 , Overfull \hbox (151.34473pt too wide) in paragraph at lines 1434--1434 \T1/ptm/m/it/10 res=0.008333333333333333\T1/pcr/m/n/10 ) [18] Underfull \hbox (badness 10000) in paragraph at lines 1474--1476 []\T1/ptm/m/n/10 json ob-ject aka python dict that can be di-rectly passed to D e-mo-graph- Underfull \hbox (badness 10000) in paragraph at lines 1487--1487 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1487--1487 \T1/ptm/m/it/10 mean=0.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1499--1501 []\T1/ptm/m/n/10 json ob-ject aka python dict that can be di-rectly passed to D e-mo-graph- Underfull \hbox (badness 10000) in paragraph at lines 1512--1512 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1518--1520 []\T1/ptm/m/n/10 json ob-ject aka python dict that can be di-rectly passed to D e-mo-graph- Underfull \hbox (badness 10000) in paragraph at lines 1550--1550 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , \T1/ptm/m/it/10 low_prev\T1/ptm/m/n/10 , Underfull \hbox (badness 5091) in paragraph at lines 1550--1550 \T1/ptm/m/it/10 high_prev\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-scrip- [19] Overfull \hbox (22.30493pt too wide) in paragraph at lines 1562--1562 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Overfull \hbox (7.6847pt too wide) in paragraph at lines 1562--1562 \T1/ptm/m/it/10 set- Overfull \hbox (34.0548pt too wide) in paragraph at lines 1562--1562 \T1/ptm/m/it/10 ting=1.0\T1/pcr/m/n/10 ) Overfull \hbox (10.30493pt too wide) in paragraph at lines 1568--1568 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1568--1568 \T1/ptm/m/it/10 pro- Overfull \hbox (58.54413pt too wide) in paragraph at lines 1568--1568 \T1/ptm/m/it/10 tected_setting=0.0\T1/ptm/m/n/10 , Overfull \hbox (9.20457pt too wide) in paragraph at lines 1568--1568 \T1/ptm/m/it/10 thresh- Overfull \hbox (53.51486pt too wide) in paragraph at lines 1568--1568 \T1/ptm/m/it/10 old_age=1825.0\T1/pcr/m/n/10 ) Overfull \hbox (46.30493pt too wide) in paragraph at lines 1574--1574 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Overfull \hbox (42.23488pt too wide) in paragraph at lines 1574--1574 \T1/ptm/m/it/10 mean- Overfull \hbox (44.91478pt too wide) in paragraph at lines 1574--1574 \T1/ptm/m/it/10 AgeAt- Overfull \hbox (28.90492pt too wide) in paragraph at lines 1574--1574 \T1/ptm/m/it/10 In- Overfull \hbox (32.23474pt too wide) in paragraph at lines 1574--1574 \T1/ptm/m/it/10 fec- Overfull \hbox (58.0548pt too wide) in paragraph at lines 1574--1574 \T1/ptm/m/it/10 tion=2.5\T1/pcr/m/n/10 ) Overfull \hbox (55.80493pt too wide) in paragraph at lines 1580--1580 []\T1/ptm/m/it/10 demog\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1586--1586 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1586--1586 \T1/ptm/m/it/10 age_bins\T1/ptm/m/n/10 , Overfull \hbox (25.80493pt too wide) in paragraph at lines 1608--1608 []\T1/ptm/m/it/10 demog\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1626--1627 []\T1/pcr/b/n/10 "15-19", etc. up to "45-49", and a column named "Years" with [20] Overfull \hbox (12.76291pt too wide) in paragraph at lines 1695--1695 [][]\T1/ptm/m/n/10 emod_api.demographics.Node.Node.IndividualAttributes[][] Underfull \hbox (badness 10000) in paragraph at lines 1695--1695 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in-di-vid-ual_properties : Overfull \hbox (13.51294pt too wide) in paragraph at lines 1695--1695 [][]\T1/ptm/m/n/10 emod_api.demographics.Node.Node.IndividualProperties[][] Underfull \hbox (badness 10000) in paragraph at lines 1695--1695 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 node_attributes: Underfull \hbox (badness 10000) in paragraph at lines 1695--1695 [][]\T1/ptm/m/n/10 emod_api.demographics.Node.Node.NodeAttributes[][] Underfull \hbox (badness 10000) in paragraph at lines 1757--1757 []\T1/ptm/m/it/10 age_distribution_flag=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ag e_distribution1=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1757--1757 \T1/ptm/m/it/10 age_distribution2=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 age_dist ribution=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1757--1757 \T1/ptm/m/it/10 preva-lence_distribution_flag=None\T1/ptm/m/n/10 , \T1/ptm/m/it /10 preva- Underfull \hbox (badness 10000) in paragraph at lines 1757--1757 \T1/ptm/m/it/10 im-mu-nity_distribution2=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 r isk_distribution_flag=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1757--1757 \T1/ptm/m/it/10 risk_distribution1=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 risk_di stribution2=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 mi- Underfull \hbox (badness 10000) in paragraph at lines 1757--1757 \T1/ptm/m/it/10 gra-tion_heterogeneity_distribution_flag=None\T1/ptm/m/n/10 , \ T1/ptm/m/it/10 mi- Underfull \hbox (badness 10000) in paragraph at lines 1757--1757 \T1/ptm/m/it/10 gra-tion_heterogeneity_distribution1=None\T1/ptm/m/n/10 , \T1/p tm/m/it/10 mi-gra- Underfull \hbox (badness 10000) in paragraph at lines 1757--1757 \T1/ptm/m/it/10 tion_heterogeneity_distribution2=None\T1/ptm/m/n/10 , \T1/ptm/m /it/10 mor-tal- Underfull \hbox (badness 7256) in paragraph at lines 1762--1762 []\T1/ptm/m/it/10 distribution_values: List[[][]float[][]] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- [21] Underfull \hbox (badness 10000) in paragraph at lines 1776--1776 []\T1/ptm/m/it/10 distribution_values=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-s ult_scale_factor=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 1796--1796 []\T1/ptm/m/it/10 axis_names: List[[][]str[][]] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1796--1796 \T1/ptm/m/it/10 axis_scale_factor: List[[][]float[][]] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1796--1796 \T1/ptm/m/it/10 axis_units=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 num_distributio n_axes=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1796--1796 \T1/ptm/m/it/10 num_population_axes=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1796--1796 \T1/ptm/m/it/10 num_population_groups=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pop- u-la- Underfull \hbox (badness 10000) in paragraph at lines 1796--1796 \T1/ptm/m/it/10 tion_groups=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-sult_scale_ factor=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Overfull \hbox (26.9222pt too wide) in paragraph at lines 1903--1903 []\T1/ptm/m/it/10 ind_attribute: [][]\T1/ptm/m/n/10 emod_api.demographics.Node. Node.IndividualAttributes[][]\T1/pcr/m/n/10 ) Overfull \hbox (34.08215pt too wide) in paragraph at lines 1909--1909 []\T1/ptm/m/it/10 ind_properties: [][]\T1/ptm/m/n/10 emod_api.demographics.Node .Node.IndividualProperties[][]\T1/pcr/m/n/10 ) [22] Overfull \hbox (22.9045pt too wide) in paragraph at lines 1940--1940 []\T1/ptm/m/it/10 nodeid\T1/ptm/m/n/10 , \T1/ptm/m/it/10 res_in_deg=0.041666666 666666664\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1946--1946 []\T1/ptm/m/it/10 lat\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lon\T1/ptm/m/n/10 , Overfull \hbox (9.16464pt too wide) in paragraph at lines 1946--1946 \T1/ptm/m/it/10 res_in_deg=0.041666666666666664\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1952--1952 []\T1/ptm/m/it/10 lat\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lon\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1981--1982 []\T1/pcr/b/n/10 distribution \T1/ptm/m/n/10 ^^U The se-lected dis-tri-bu-tion (need to come from Underfull \hbox (badness 10000) in paragraph at lines 2001--2001 []\T1/ptm/m/it/10 filename\T1/ptm/m/n/10 , \T1/ptm/m/it/10 dis-tri-bu-tion\T1/p tm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2002--2003 \T1/ptm/m/n/10 Set the \T1/pcr/m/n/10 ImmunityDistributionFlag\T1/ptm/m/n/10 , \T1/pcr/m/n/10 ImmunityDistribution1 \T1/ptm/m/n/10 and Underfull \hbox (badness 10000) in paragraph at lines 2029--2029 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2029--2029 \T1/ptm/m/it/10 fn\T1/ptm/m/n/10 , [23] Underfull \hbox (badness 10000) in paragraph at lines 2099--2099 []\T1/ptm/m/it/10 cb\T1/ptm/m/n/10 , Overfull \hbox (28.70406pt too wide) in paragraph at lines 2099--2099 \T1/ptm/m/it/10 use_existing=False\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 2125--2125 []\T1/ptm/m/it/10 cb\T1/ptm/m/n/10 , Overfull \hbox (34.70406pt too wide) in paragraph at lines 2125--2125 \T1/ptm/m/it/10 use_existing=False\T1/pcr/m/n/10 ) [24] Underfull \hbox (badness 10000) in paragraph at lines 2197--2197 []\T1/ptm/m/it/10 point\T1/ptm/m/n/10 , Overfull \hbox (37.41425pt too wide) in paragraph at lines 2197--2197 \T1/ptm/m/it/10 grid_id_2_cell_id\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2238--2238 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Event_Trigger\T1/ptm/m/n /10 , Overfull \hbox (73.22345pt too wide) in paragraph at lines 2238--2238 \T1/ptm/m/it/10 Node_Selection_Type=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 DISTANCE_ ONLY\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (57.50374pt too wide) in paragraph at lines 2238--2238 \T1/ptm/m/it/10 Max_Distance_To_Other_Nodes_Km=- [25] Underfull \hbox (badness 10000) in paragraph at lines 2273--2273 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 In-ter-ven- Underfull \hbox (badness 10000) in paragraph at lines 2316--2317 []\T1/pcr/b/n/10 but without the distribution, which is inferred. E.g., Underfull \hbox (badness 10000) in paragraph at lines 2337--2337 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Event_Or_Config=\TS1/ptm /m/it/10 '\T1/ptm/m/it/10 Event\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/ 10 Con-fig=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2337--2337 \T1/ptm/m/it/10 Event=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 NoTrigger\TS1/ptm/m/it/ 10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Ten-dency=1.0\T1/ptm/m/n/10 , \T1/ptm/m/it /10 Sin-gle_Use=True\T1/ptm/m/n/10 , [26] Underfull \hbox (badness 10000) in paragraph at lines 2381--2381 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Trig-gers\T1/ptm/m/n/10 , \T1/ptm/m/it/10 In-ter-ven-tions\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Prop- Underfull \hbox (badness 10000) in paragraph at lines 2381--2381 \T1/ptm/m/it/10 erty_Restrictions=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 De-mo- Underfull \hbox (badness 10000) in paragraph at lines 2381--2381 \T1/ptm/m/it/10 graphic_Coverage=1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar-get_Ag e_Min=0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar- Underfull \hbox (badness 10000) in paragraph at lines 2381--2381 \T1/ptm/m/it/10 get_Age_Max=45625\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar-get_Gende r=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 All\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/p tm/m/it/10 Tar- Underfull \hbox (badness 10000) in paragraph at lines 2381--2381 \T1/ptm/m/it/10 get_Residents_Only=1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Duration=- 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Black- Underfull \hbox (badness 10000) in paragraph at lines 2381--2381 \T1/ptm/m/it/10 out_Event_Trigger=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Blackout_Ev ent_Trigger\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Black- Underfull \hbox (badness 10000) in paragraph at lines 2381--2381 \T1/ptm/m/it/10 out_Period=0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Black-out_On_First _Occurrence=0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2443--2443 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar-get_Property_Key\T1/ ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2443--2443 \T1/ptm/m/it/10 Tar-get_Property_Value\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2443--2443 \T1/ptm/m/it/10 New_Property_Value\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2443--2443 \T1/ptm/m/it/10 Daily_Probability=1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Max-i- Underfull \hbox (badness 10000) in paragraph at lines 2443--2443 \T1/ptm/m/it/10 In-ter-ven-tion_Name=\TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2443--2443 \T1/ptm/m/it/10 Event_Trigger_Distributed=\TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , [27] Underfull \hbox (badness 10000) in paragraph at lines 2463--2463 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Start_Day\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Node- Underfull \hbox (badness 10000) in paragraph at lines 2463--2463 \T1/ptm/m/it/10 set_Config=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Num- Underfull \hbox (badness 10000) in paragraph at lines 2463--2463 \T1/ptm/m/it/10 ber_Repetitions=1\T1/ptm/m/n/10 , Overfull \hbox (11.65335pt too wide) in paragraph at lines 2463--2463 \T1/ptm/m/it/10 Timesteps_Between_Repetitions=- Underfull \hbox (badness 10000) in paragraph at lines 2463--2463 \T1/ptm/m/it/10 1\T1/ptm/m/n/10 , Overfull \hbox (53.26375pt too wide) in paragraph at lines 2463--2463 \T1/ptm/m/it/10 Event_Name=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Scheduled_Campaign _Event\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2463--2463 \T1/ptm/m/it/10 Prop-erty_Restrictions=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2463--2463 \T1/ptm/m/it/10 De-mo-graphic_Coverage=1.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2463--2463 \T1/ptm/m/it/10 Tar-get_Age_Min=0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar- Underfull \hbox (badness 10000) in paragraph at lines 2463--2463 \T1/ptm/m/it/10 get_Age_Max=45625\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar- Underfull \hbox (badness 10000) in paragraph at lines 2463--2463 \T1/ptm/m/it/10 get_Gender=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 All\TS1/ptm/m/it/1 0 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 In-ter-ven- [28] Underfull \hbox (badness 10000) in paragraph at lines 2523--2523 \T1/ptm/m/it/10 Trig-gers\T1/ptm/m/n/10 , \T1/ptm/m/it/10 In-ter-ven-tion_List\ T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2523--2523 \T1/ptm/m/it/10 Node-set_Config=None\T1/ptm/m/n/10 , Overfull \hbox (17.59343pt too wide) in paragraph at lines 2523--2523 \T1/ptm/m/it/10 Node_Property_Restrictions=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2523--2523 \T1/ptm/m/it/10 Prop-erty_Restrictions=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2523--2523 \T1/ptm/m/it/10 Num-ber_Repetitions=1\T1/ptm/m/n/10 , Overfull \hbox (11.65335pt too wide) in paragraph at lines 2523--2523 \T1/ptm/m/it/10 Timesteps_Between_Repetitions=- Underfull \hbox (badness 10000) in paragraph at lines 2523--2523 \T1/ptm/m/it/10 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 De-mo- Underfull \hbox (badness 10000) in paragraph at lines 2523--2523 \T1/ptm/m/it/10 graphic_Coverage=1.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2523--2523 \T1/ptm/m/it/10 Tar-get_Age_Min=0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar- Underfull \hbox (badness 10000) in paragraph at lines 2523--2523 \T1/ptm/m/it/10 get_Age_Max=45625\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2523--2523 \T1/ptm/m/it/10 Tar-get_Gender=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 All\TS1/ptm/m/ it/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar- Underfull \hbox (badness 10000) in paragraph at lines 2523--2523 \T1/ptm/m/it/10 get_Residents_Only=1\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2523--2523 \T1/ptm/m/it/10 Duration=- 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Black- Overfull \hbox (59.96321pt too wide) in paragraph at lines 2523--2523 \T1/ptm/m/it/10 out_Event_Trigger=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Blackout_Ev ent_Trigger\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2523--2523 \T1/ptm/m/it/10 Black-out_Period=0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Black- Underfull \hbox (badness 10000) in paragraph at lines 2523--2523 \T1/ptm/m/it/10 out_On_First_Occurrence=0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2523--2523 \T1/ptm/m/it/10 Dis-qual-i-fy- Underfull \hbox (badness 10000) in paragraph at lines 2523--2523 \T1/ptm/m/it/10 ing_Properties=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 De- [29] Underfull \hbox (badness 10000) in paragraph at lines 2604--2604 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Base_Sensitivity=1\T1/pt m/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2604--2604 \T1/ptm/m/it/10 Base_Specificity=1\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2604--2604 \T1/ptm/m/it/10 Days_To_Diagnosis=0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2604--2604 \T1/ptm/m/it/10 Treat-ment_Fraction=1\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2651--2651 \T1/ptm/m/it/10 pro-file=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 CONST\TS1/ptm/m/it/1 0 '\T1/ptm/m/n/10 , ! LaTeX Error: Too deeply nested. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.2660 ...{CONST(ANT)}] \leavevmode\begin{itemize} [30] Underfull \hbox (badness 10000) in paragraph at lines 2722--2722 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day=1\T1/ptm/m/n/1 0 , Underfull \hbox (badness 10000) in paragraph at lines 2722--2722 \T1/ptm/m/it/10 new_infectivity=1.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2722--2722 \T1/ptm/m/it/10 pro-file=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 CONST\TS1/ptm/m/it/1 0 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2722--2722 \T1/ptm/m/it/10 node_ids=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2722--2722 \T1/ptm/m/it/10 re-cur-ring=True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2730--2730 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2750--2750 []\T1/ptm/m/it/10 campaign_builder\T1/ptm/m/n/10 , \T1/ptm/m/it/10 timestep\T1/ ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2784--2784 \T1/ptm/m/it/10 ef-fi-cacy=1.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2784--2784 \T1/ptm/m/it/10 sv_name=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Vaccine\TS1/ptm/m/it/ 10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2784--2784 \T1/ptm/m/it/10 wan-ing_duration=100\T1/ptm/m/n/10 , [31] Underfull \hbox (badness 10000) in paragraph at lines 2805--2805 []\T1/ptm/m/it/10 timestep\T1/ptm/m/n/10 , \T1/ptm/m/it/10 file- Underfull \hbox (badness 10000) in paragraph at lines 2822--2822 []\T1/ptm/m/it/10 schema_path\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ini-tial=1.0\T1/p tm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2822--2822 \T1/ptm/m/it/10 box_duration=365\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de- [32] Underfull \hbox (badness 5548) in paragraph at lines 2929--2932 []\T1/ptm/m/n/10 EMOD/DTK for-mat mi-gra-tion files (and as-so-ci-ated meta-dat a files) can be writ-ten with mi-gra- [33] [34] Underfull \hbox (badness 10000) in paragraph at lines 3195--3195 \T1/ptm/m/it/10 num_nodes=100\T1/ptm/m/n/10 , \T1/ptm/m/it/10 mig_factor=1.0\T1 /ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3195--3195 \T1/ptm/m/it/10 frac_rural=0.3\T1/ptm/m/n/10 , \T1/ptm/m/it/10 id_ref=\TS1/ptm/ m/it/10 '\T1/ptm/m/it/10 from_params\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm/ m/it/10 mi- Overfull \hbox (68.98433pt too wide) in paragraph at lines 3206--3206 []\T1/ptm/m/it/10 demographics_file_path: Underfull \hbox (badness 10000) in paragraph at lines 3206--3206 [][]\T1/ptm/m/it/10 str[][]\T1/ptm/m/n/10 , Overfull \hbox (2.42482pt too wide) in paragraph at lines 3206--3206 \T1/ptm/m/it/10 params: Underfull \hbox (badness 10000) in paragraph at lines 3206--3206 [][]\T1/ptm/m/it/10 str[][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3206--3206 \T1/ptm/m/it/10 id_ref: Underfull \hbox (badness 10000) in paragraph at lines 3206--3206 [][]\T1/ptm/m/it/10 str[][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3206--3206 \T1/ptm/m/it/10 mi-gra- Overfull \hbox (24.21457pt too wide) in paragraph at lines 3206--3206 \T1/ptm/m/it/10 tion_type=1\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 3206--3206 \OMS/cmsy/m/n/10 !$ Overfull \hbox (135.19371pt too wide) in paragraph at lines 3206--3206 [][]\T1/ptm/m/it/10 emod_api.migration.migration.Migration[][] Overfull \hbox (2.15437pt too wide) in paragraph at lines 3234--3234 []\T1/ptm/m/it/10 demographics_file_path\T1/ptm/m/n/10 , [35] Overfull \hbox (24.70302pt too wide) in paragraph at lines 3272--3272 []\T1/ptm/m/it/10 path_to_binary\T1/ptm/m/n/10 , \T1/ptm/m/it/10 path_to_write_ schema=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 schema.json\TS1/ptm/m/it/10 '\T1/pcr/m /n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 3293--3293 []\T1/ptm/m/it/10 input_serpop_path\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3293--3293 \T1/ptm/m/it/10 mod_fn=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3314--3314 []\T1/ptm/m/it/10 file: [36] [37] Underfull \hbox (badness 10000) in paragraph at lines 3440--3440 []\T1/ptm/m/it/10 name: [][]str[][]\T1/ptm/m/n/10 , \T1/ptm/m/it/10 han-dle\T1/ ptm/m/n/10 , \T1/ptm/m/it/10 cur- Underfull \hbox (badness 10000) in paragraph at lines 3475--3475 []\T1/ptm/m/it/10 handle\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cur- [38] Underfull \hbox (badness 6493) in paragraph at lines 3604--3604 \T1/ptm/m/it/10 True, \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 date\TS1/ptm/m/it/10 '\ T1/ptm/m/it/10 : \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Mon Oct 25 Underfull \hbox (badness 5050) in paragraph at lines 3604--3604 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 tool\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 : \TS1/ ptm/m/it/10 '\T1/ptm/m/it/10 dtk-File-Tools.py\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 , \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 ver- [39] [40] Underfull \hbox (badness 10000) in paragraph at lines 3838--3838 \T1/ptm/m/it/10 List[[][]int[][]] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 data: Underfull \hbox (badness 10000) in paragraph at lines 3838--3838 \T1/ptm/m/it/10 numpy.array = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start: [41] [42] [43] [44] [45] [46] Chapter 4. [47] [48] Overfull \hbox (66.6225pt too wide) in paragraph at lines 4377--4378 []\T1/pcr/m/n/10 emod_api.config.default_from_schema_no_validation\T1/ptm/m/n/1 0 , Overfull \hbox (36.6225pt too wide) in paragraph at lines 4378--4379 []\T1/pcr/m/n/10 emod_api.config.dtk_post_process_adhocevents\T1/ptm/m/n/10 , Overfull \hbox (30.6225pt too wide) in paragraph at lines 4379--4380 []\T1/pcr/m/n/10 emod_api.config.dtk_pre_process_adhocevents\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4380--4381 []\T1/pcr/m/n/10 emod_api.config.dtk_pre_process_w5ml\T1/ptm/m/n/10 , Overfull \hbox (12.6225pt too wide) in paragraph at lines 4388--4389 []\T1/pcr/m/n/10 emod_api.demographics.demographics_utils\T1/ptm/m/n/10 , Overfull \hbox (30.6225pt too wide) in paragraph at lines 4389--4390 []\T1/pcr/m/n/10 emod_api.demographics.DemographicsGenerator\T1/ptm/m/n/10 , Overfull \hbox (72.6225pt too wide) in paragraph at lines 4390--4391 []\T1/pcr/m/n/10 emod_api.demographics.DemographicsInputDataParsers\T1/ptm/m/n/ 10 , Overfull \hbox (30.6225pt too wide) in paragraph at lines 4391--4392 []\T1/pcr/m/n/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 , Overfull \hbox (6.6225pt too wide) in paragraph at lines 4392--4393 []\T1/pcr/m/n/10 emod_api.demographics.grid_construction\T1/ptm/m/n/10 , Overfull \hbox (0.6225pt too wide) in paragraph at lines 4396--4397 []\T1/pcr/m/n/10 emod_api.interventions.import_pressure\T1/ptm/m/n/10 , Overfull \hbox (0.6225pt too wide) in paragraph at lines 4397--4398 []\T1/pcr/m/n/10 emod_api.interventions.node_multiplier\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4399--4400 []\T1/pcr/m/n/10 emod_api.interventions.simple_vaccine\T1/ptm/m/n/10 , Overfull \hbox (6.6225pt too wide) in paragraph at lines 4406--4407 []\T1/pcr/m/n/10 emod_api.schema.dtk_post_process_schema\T1/ptm/m/n/10 , Overfull \hbox (0.6225pt too wide) in paragraph at lines 4410--4411 []\T1/pcr/m/n/10 emod_api.serialization.CensusAndModPop\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4411--4412 []\T1/pcr/m/n/10 emod_api.serialization.dtkFileSupport\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4413--4414 []\T1/pcr/m/n/10 emod_api.serialization.dtkFileUtility\T1/ptm/m/n/10 , Overfull \hbox (30.6225pt too wide) in paragraph at lines 4414--4415 []\T1/pcr/m/n/10 emod_api.serialization.SerializedPopulation\T1/ptm/m/n/10 , [49] (./institute-for-disease-modeling-emod-api.ind [50] Overfull \hbox (36.00078pt too wide) in paragraph at lines 8--10 []\T1/pcr/m/n/10 add() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.No de.Node.IndividualProperties Overfull \hbox (96.00078pt too wide) in paragraph at lines 11--13 []\T1/pcr/m/n/10 add_parameter() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demog raphics.Node.Node.IndividualProperties Overfull \hbox (36.32152pt too wide) in paragraph at lines 13--15 []\T1/pcr/m/n/10 add_parameter() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demog raphics.Node.Updateable Underfull \hbox (badness 10000) in paragraph at lines 15--17 []\T1/pcr/m/n/10 AddAgeDependentTransmission() Overfull \hbox (34.06111pt too wide) in paragraph at lines 15--17 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 17--19 []\T1/pcr/m/n/10 AddIndividualPropertyAndHINT() Overfull \hbox (34.06111pt too wide) in paragraph at lines 17--19 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 19--21 []\T1/pcr/m/n/10 AgeStructureUNWPP() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (15.62103pt too wide) in paragraph at lines 19--21 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Overfull \hbox (7.30118pt too wide) in paragraph at lines 21--23 []\T1/pcr/m/n/10 AgesYears() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration .migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 23--24 []\T1/pcr/m/n/10 AIR \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.migrati on.Migration at- Overfull \hbox (37.49991pt too wide) in paragraph at lines 24--26 []\T1/pcr/m/n/10 append() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializatio n.dtkFileTools.DtkFile.Contents Overfull \hbox (32.4899pt too wide) in paragraph at lines 26--28 []\T1/pcr/m/n/10 append() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializatio n.dtkFileTools.DtkFile.Objects Underfull \hbox (badness 10000) in paragraph at lines 28--30 []\T1/pcr/m/n/10 application() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (7.95116pt too wide) in paragraph at lines 28--30 \T1/ptm/m/it/10 emod_api.config.dtk_post_process_adhocevents\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 30--32 []\T1/pcr/m/n/10 application() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (4.2412pt too wide) in paragraph at lines 30--32 \T1/ptm/m/it/10 emod_api.config.dtk_pre_process_adhocevents\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 32--34 []\T1/pcr/m/n/10 application() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 32--34 \T1/ptm/m/it/10 emod_api.config.dtk_pre_process_w5ml\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 34--36 []\T1/pcr/m/n/10 application() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 34--36 \T1/ptm/m/it/10 emod_api.schema.dtk_post_process_schema\T1/ptm/m/n/10 ), Overfull \hbox (85.96114pt too wide) in paragraph at lines 36--38 []\T1/pcr/m/n/10 apply_overlay() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demog raphics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 38--40 []\T1/pcr/m/n/10 apply_to_defaults_or_nodes() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 i n mod-ule Underfull \hbox (badness 10000) in paragraph at lines 38--40 \T1/ptm/m/it/10 emod_api.demographics.demographics_utils\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 40--42 []\T1/pcr/m/n/10 arcsec_to_deg() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (17.1711pt too wide) in paragraph at lines 40--42 \T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/ptm/m/n/10 ), Overfull \hbox (62.83089pt too wide) in paragraph at lines 42--44 []\T1/pcr/m/n/10 as_dataframe() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channe lreports.channels.ChannelReport Overfull \hbox (41.61118pt too wide) in paragraph at lines 44--46 []\T1/pcr/m/n/10 as_dictionary() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.chann elreports.channels.Channel Overfull \hbox (37.71117pt too wide) in paragraph at lines 46--48 []\T1/pcr/m/n/10 as_dictionary() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.chann elreports.channels.Header Underfull \hbox (badness 10000) in paragraph at lines 50--52 []\T1/pcr/m/n/10 Author() 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10000) in paragraph at lines 126--128 []\T1/pcr/m/n/10 date() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serialization. dtkFileTools.DtkFile Overfull \hbox (19.30118pt too wide) in paragraph at lines 128--130 []\T1/pcr/m/n/10 DateCreated() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migrati on.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 130--132 []\T1/pcr/m/n/10 default_population Underfull \hbox (badness 10000) in paragraph at lines 130--132 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Node.Node at- Underfull \hbox (badness 7291) in paragraph at lines 132--134 []\T1/pcr/m/n/10 DefaultSusceptibilityDistribution() \T1/ptm/m/n/10 (\T1/ptm/m/ it/10 in Overfull \hbox (46.96086pt too wide) in paragraph at lines 132--134 \T1/ptm/m/it/10 mod-ule emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/ 10 ), Underfull \hbox (badness 10000) in paragraph at lines 134--136 []\T1/pcr/m/n/10 DelayedIntervention() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 136--138 []\T1/pcr/m/n/10 Demographics \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 136--138 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 138--140 []\T1/pcr/m/n/10 DemographicsGenerator \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Overfull \hbox (17.1711pt too wide) in paragraph at lines 138--140 \T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 140--142 []\T1/pcr/m/n/10 DemographicsOverlay \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 140--142 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 142--144 []\T1/pcr/m/n/10 DemographicsType \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Overfull \hbox (17.1711pt too wide) in paragraph at lines 142--144 \T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 144--146 []\T1/pcr/m/n/10 do_mapping_from_events() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule Overfull \hbox (4.2412pt too wide) in paragraph at lines 144--146 \T1/ptm/m/it/10 emod_api.config.dtk_pre_process_adhocevents\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 147--149 []\T1/pcr/m/n/10 dtk_to_schema() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (56.83089pt too wide) in paragraph at lines 149--151 []\T1/pcr/m/n/10 dtk_version() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channel reports.channels.ChannelReport Overfull \hbox (25.71117pt too wide) in paragraph at lines 151--153 []\T1/pcr/m/n/10 dtk_version() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channel reports.channels.Header Underfull \hbox (badness 10000) in paragraph at lines 154--156 []\T1/pcr/m/n/10 DtkFile.Contents \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 156--158 []\T1/pcr/m/n/10 DtkFile.Objects \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 158--160 []\T1/pcr/m/n/10 DtkFileV1 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 160--162 []\T1/pcr/m/n/10 DtkFileV2 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 162--164 []\T1/pcr/m/n/10 DtkFileV2.NodesV2 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 164--166 []\T1/pcr/m/n/10 DtkFileV3 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 166--168 []\T1/pcr/m/n/10 DtkFileV3.NodesV3 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 168--170 []\T1/pcr/m/n/10 DtkFileV4 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 170--172 []\T1/pcr/m/n/10 DtkHeader \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in [52] Underfull \hbox (badness 10000) in paragraph at lines 172--174 []\T1/pcr/m/n/10 duplicate_nodeID_check() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule Overfull \hbox (46.65079pt too wide) in paragraph at lines 172--174 \T1/ptm/m/it/10 emod_api.demographics.DemographicsInputDataParsers\T1/ptm/m/n/1 0 ), Underfull \hbox (badness 10000) in paragraph at lines 177--179 []\T1/pcr/m/n/10 EllZeeFour \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Overfull \hbox (64.1225pt too wide) in paragraph at lines 191--192 []\T1/pcr/m/n/10 emod_api.config.default_from_schema_no_validation Overfull \hbox (34.1225pt too wide) in paragraph at lines 193--194 []\T1/pcr/m/n/10 emod_api.config.dtk_post_process_adhocevents Overfull \hbox (28.1225pt too wide) in paragraph at lines 195--196 []\T1/pcr/m/n/10 emod_api.config.dtk_pre_process_adhocevents Overfull \hbox (10.1225pt too wide) in paragraph at lines 213--214 []\T1/pcr/m/n/10 emod_api.demographics.demographics_utils Overfull \hbox (28.1225pt too wide) in paragraph at lines 215--216 []\T1/pcr/m/n/10 emod_api.demographics.DemographicsGenerator Overfull \hbox (70.1225pt too wide) in paragraph at lines 217--218 []\T1/pcr/m/n/10 emod_api.demographics.DemographicsInputDataParsers Overfull \hbox (28.1225pt too wide) in paragraph at lines 219--220 []\T1/pcr/m/n/10 emod_api.demographics.DemographicsTemplates Overfull \hbox (4.1225pt too wide) in paragraph at lines 221--222 []\T1/pcr/m/n/10 emod_api.demographics.grid_construction Overfull \hbox (4.1225pt too wide) in paragraph at lines 249--250 []\T1/pcr/m/n/10 emod_api.schema.dtk_post_process_schema Overfull \hbox (28.1225pt too wide) in paragraph at lines 265--266 []\T1/pcr/m/n/10 emod_api.serialization.SerializedPopulation Overfull \hbox (15.62103pt too wide) in paragraph at lines 277--279 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), [53] Underfull \hbox (badness 10000) in paragraph at lines 279--281 []\T1/pcr/m/n/10 examine_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 289--291 []\T1/pcr/m/n/10 fill_nodes_legacy() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (46.65079pt too wide) in paragraph at lines 289--291 \T1/ptm/m/it/10 emod_api.demographics.DemographicsInputDataParsers\T1/ptm/m/n/1 0 ), Overfull \hbox (4.62106pt too wide) in paragraph at lines 291--293 []\T1/pcr/m/n/10 finalize() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.schema_to_ class.ReadOnlyDict Overfull \hbox (36.30013pt too wide) in paragraph at lines 293--295 []\T1/pcr/m/n/10 find() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule emod_api.ser ialization.SerializedPopulation\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 295--297 []\T1/pcr/m/n/10 flattenConfig() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (81.59949pt too wide) in paragraph at lines 297--299 []\T1/pcr/m/n/10 flush() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serialization .SerializedPopulation.SerializedPopulation Underfull \hbox (badness 10000) in paragraph at lines 301--303 []\T1/pcr/m/n/10 from_csv() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 301--303 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 303--305 []\T1/pcr/m/n/10 from_data() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demograph ics.Node.Node Underfull \hbox (badness 10000) in paragraph at lines 305--307 []\T1/pcr/m/n/10 from_dataframe() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (17.1711pt too wide) in paragraph at lines 305--307 \T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/ptm/m/n/10 ), Overfull \hbox (16.1225pt too wide) in paragraph at lines 309--311 []\T1/pcr/m/n/10 from_demog_and_param_gravity_webservice() Overfull \hbox (69.48074pt too wide) in paragraph at lines 311--313 []\T1/pcr/m/n/10 from_dict() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demograph ics.Node.Node.IndividualAttributes Overfull \hbox (136.12994pt too wide) in paragraph at lines 313--315 []\T1/pcr/m/n/10 from_dict() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demograph ics.Node.Node.IndividualAttributes.AgeDistribution Overfull \hbox (158.45937pt too wide) in paragraph at lines 315--317 []\T1/pcr/m/n/10 from_dict() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demograph ics.Node.Node.IndividualAttributes.MortalityDistribution Overfull \hbox (49.48103pt too wide) in paragraph at lines 317--319 []\T1/pcr/m/n/10 from_dict() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demograph ics.Node.Node.NodeAttributes Underfull \hbox (badness 10000) in paragraph at lines 319--321 []\T1/pcr/m/n/10 from_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.weather.w eather.Metadata Underfull \hbox (badness 10000) in paragraph at lines 321--323 []\T1/pcr/m/n/10 from_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 321--323 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 323--325 []\T1/pcr/m/n/10 from_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (17.1711pt too wide) in paragraph at lines 323--325 \T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 325--326 []\T1/pcr/m/n/10 from_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 326--328 []\T1/pcr/m/n/10 from_params() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 326--328 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 328--329 []\T1/pcr/m/n/10 from_params() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 329--331 []\T1/pcr/m/n/10 from_pop_csv() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 329--331 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 331--333 []\T1/pcr/m/n/10 from_template_node() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 331--333 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 333--335 []\T1/pcr/m/n/10 FullRisk() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (15.62103pt too wide) in paragraph at lines 333--335 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Overfull \hbox (37.30118pt too wide) in paragraph at lines 338--340 []\T1/pcr/m/n/10 GenderDataType() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migr ation.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 340--342 []\T1/pcr/m/n/10 generate_demographics() Overfull \hbox (115.97037pt too wide) in paragraph at lines 340--342 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator.Dem ographicsGenerator Overfull \hbox (80.97084pt too wide) in paragraph at lines 342--344 []\T1/pcr/m/n/10 generate_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demog raphics.BaseInputFile.BaseInputFile Overfull \hbox (85.96114pt too wide) in paragraph at lines 344--346 []\T1/pcr/m/n/10 generate_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demog raphics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 346--348 []\T1/pcr/m/n/10 generate_headers() Overfull \hbox (29.07082pt too wide) in paragraph at lines 346--348 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.BaseInputFile.BaseInputFi le Underfull \hbox (badness 10000) in paragraph at lines 348--350 []\T1/pcr/m/n/10 generate_metadata() Overfull \hbox (115.97037pt too wide) in paragraph at lines 348--350 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator.Dem ographicsGenerator Overfull \hbox (173.87039pt too wide) in paragraph at lines 350--352 []\T1/pcr/m/n/10 generate_nodes() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demo graphics.DemographicsGenerator.DemographicsGenerator Underfull \hbox (badness 10000) in paragraph at lines 353--355 []\T1/pcr/m/n/10 get_bbox() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 353--355 \T1/ptm/m/it/10 emod_api.demographics.grid_construction\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 355--357 []\T1/pcr/m/n/10 get_class_with_defaults() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in m od-ule Overfull \hbox (62.64088pt too wide) in paragraph at lines 357--359 \T1/ptm/m/it/10 mod-ule emod_api.config.default_from_schema_no_validation\T1/pt m/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 362--364 []\T1/pcr/m/n/10 get_fert_dist() \T1/ptm/m/n/10 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Overfull \hbox (55.96114pt too wide) in paragraph at lines 370--372 []\T1/pcr/m/n/10 get_node() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographi cs.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 372--374 []\T1/pcr/m/n/10 get_node_ids_from_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 372--374 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 374--376 []\T1/pcr/m/n/10 get_node_offsets() Underfull \hbox (badness 10000) in paragraph at lines 374--376 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 376--378 []\T1/pcr/m/n/10 get_node_pops_from_params() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 378--380 []\T1/pcr/m/n/10 get_parameters() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox 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ts.channels.ChannelReport Underfull \hbox (badness 10000) in paragraph at lines 403--405 []\T1/pcr/m/n/10 id() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.spatialreports.s patial.SpatialNode Underfull \hbox (badness 7308) in paragraph at lines 405--406 []\T1/pcr/m/n/10 id() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.weather.weather. 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in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 612--614 []\T1/pcr/m/n/10 NoInitialPrevalence() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-u le Overfull \hbox (15.62103pt too wide) in paragraph at lines 612--614 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 614--616 []\T1/pcr/m/n/10 NoRisk() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (15.62103pt too wide) in paragraph at lines 614--616 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Overfull \hbox (8.94016pt too wide) in paragraph at lines 616--618 []\T1/pcr/m/n/10 NullPtr \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in emod_api.seri alization.dtkFileSupport\T1/ptm/m/n/10 ), Overfull \hbox (62.83089pt too wide) in paragraph at lines 618--620 []\T1/pcr/m/n/10 num_channels() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channe lreports.channels.ChannelReport Overfull \hbox (31.71117pt too wide) in paragraph at 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emod_api.demogr aphics.Node.Node Underfull \hbox (badness 10000) in paragraph at lines 670--672 []\T1/pcr/m/n/10 SAME_FOR_BOTH_GENDERS Underfull \hbox (badness 10000) in paragraph at lines 670--672 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 673--675 []\T1/pcr/m/n/10 ScheduledCampaignEvent() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 675--677 []\T1/pcr/m/n/10 schema_to_config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 675--677 \T1/ptm/m/it/10 emod_api.config.from_poi_and_binary\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 677--679 []\T1/pcr/m/n/10 schema_to_config_subnode() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (31.30106pt too wide) in paragraph at lines 677--679 \T1/ptm/m/it/10 emod_api.config.default_from_schema_no_validation\T1/ptm/m/n/10 ), 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paragraph at lines 698--700 []\T1/pcr/m/n/10 set_individual_properties() Underfull \hbox (badness 10000) in paragraph at lines 700--702 []\T1/pcr/m/n/10 set_node_attributes() Overfull \hbox (173.87039pt too wide) in paragraph at lines 702--704 []\T1/pcr/m/n/10 set_resolution() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demo graphics.DemographicsGenerator.DemographicsGenerator Underfull \hbox (badness 10000) in paragraph at lines 704--706 []\T1/pcr/m/n/10 set_risk_mod() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 704--706 \T1/ptm/m/it/10 emod_api.demographics.demographics_utils\T1/ptm/m/n/10 ), Overfull \hbox (16.62106pt too wide) in paragraph at lines 706--708 []\T1/pcr/m/n/10 set_schema() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.schema_t o_class.ReadOnlyDict Underfull \hbox (badness 10000) in paragraph at lines 709--711 []\T1/pcr/m/n/10 set_schema() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 709--711 \T1/ptm/m/it/10 emod_api.config.from_poi_and_binary\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 711--713 []\T1/pcr/m/n/10 set_static_demographics() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in m od-ule Underfull \hbox (badness 10000) in paragraph at lines 711--713 \T1/ptm/m/it/10 emod_api.demographics.demographics_utils\T1/ptm/m/n/10 ), Overfull \hbox (79.96114pt too wide) in paragraph at lines 713--715 []\T1/pcr/m/n/10 SetBirthRate() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demogr aphics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 715--717 []\T1/pcr/m/n/10 SetConstantRisk() Overfull \hbox (34.06111pt too wide) in paragraph at lines 715--717 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 717--719 []\T1/pcr/m/n/10 SetConstantSusceptibility() Overfull \hbox (34.06111pt too wide) in paragraph at lines 717--719 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SetHeteroRiskExponDist() Overfull \hbox (34.06111pt too wide) in paragraph at lines 733--735 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 735--737 []\T1/pcr/m/n/10 SetHeteroRiskLognormalDist() Overfull \hbox (34.06111pt too wide) in paragraph at lines 735--737 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 737--739 []\T1/pcr/m/n/10 SetHeteroRiskUniformDist() Overfull \hbox (34.06111pt too wide) in paragraph at lines 737--739 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 739--741 []\T1/pcr/m/n/10 SetIndividualAttributesWithFertMort() Overfull \hbox (34.06111pt too wide) in paragraph at lines 739--741 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at 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emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/ 10 ), Overfull \hbox (34.70026pt too wide) in paragraph at lines 757--759 []\T1/pcr/m/n/10 simulation() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializ ation.dtkFileTools.DtkFileV1 Overfull \hbox (34.70026pt too wide) in paragraph at lines 759--761 []\T1/pcr/m/n/10 simulation() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializ ation.dtkFileTools.DtkFileV2 Overfull \hbox (34.70026pt too wide) in paragraph at lines 761--763 []\T1/pcr/m/n/10 simulation() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializ ation.dtkFileTools.DtkFileV3 Overfull \hbox (2.94016pt too wide) in paragraph at lines 763--764 []\T1/pcr/m/n/10 Snappy \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in emod_api.seria lization.dtkFileSupport\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 764--765 []\T1/pcr/m/n/10 SpatialNode \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 765--767 []\T1/pcr/m/n/10 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step_size() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channelre ports.channels.ChannelReport Overfull \hbox (13.71117pt too wide) in paragraph at lines 779--781 []\T1/pcr/m/n/10 step_size() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channelre ports.channels.Header Underfull \hbox (badness 10000) in paragraph at lines 781--783 []\T1/pcr/m/n/10 StepFunctionSusceptibility() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 i n mod-ule Overfull \hbox (15.62103pt too wide) in paragraph at lines 781--783 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Overfull \hbox (50.83089pt too wide) in paragraph at lines 788--790 []\T1/pcr/m/n/10 time_stamp() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channelr eports.channels.ChannelReport Overfull \hbox (19.71117pt too wide) in paragraph at lines 790--792 []\T1/pcr/m/n/10 time_stamp() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channelr eports.channels.Header Overfull \hbox (32.8303pt too wide) in paragraph at lines 792--794 []\T1/pcr/m/n/10 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configjson_path\T1/ptm/m/n/10 , Overfull \hbox (63.52425pt too wide) in paragraph at lines 645--645 []\T1/ptm/m/it/10 start_config_dict\T1/ptm/m/n/10 , Overfull \hbox (71.87448pt too wide) in paragraph at lines 645--645 \T1/ptm/m/it/10 poi_set_param_fn\T1/pcr/m/n/10 ) Overfull \hbox (66.30441pt too wide) in paragraph at lines 654--654 []\T1/ptm/m/it/10 start_config_path\T1/ptm/m/n/10 , Overfull \hbox (71.87448pt too wide) in paragraph at lines 654--654 \T1/ptm/m/it/10 poi_set_param_fn\T1/pcr/m/n/10 ) Overfull \hbox (18.36475pt too wide) in paragraph at lines 663--663 []\T1/ptm/m/it/10 schema_path\T1/ptm/m/n/10 , Overfull \hbox (41.87448pt too wide) in paragraph at lines 663--663 \T1/ptm/m/it/10 poi_set_param_fn\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 672--672 []\T1/ptm/m/it/10 eradication_path\T1/ptm/m/n/10 , [10] Underfull \hbox (badness 10000) in paragraph at lines 720--722 []\T1/ptm/m/n/10 builder = s2c.SchemaConfigBuilder( Underfull \hbox (badness 10000) in paragraph at lines 729--729 []\T1/ptm/m/it/10 schema_name=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 schema.json\TS1 /ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 729--729 \T1/ptm/m/it/10 model=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 GENERIC_SIM\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 729--729 \T1/ptm/m/it/10 con-fig_out=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 config.json\TS1/p tm/m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (28.28418pt too wide) in paragraph at lines 740--740 []\T1/ptm/m/it/10 schema_name=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 schema.json\TS1 /ptm/m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (11.09424pt too wide) in paragraph at lines 740--740 \T1/ptm/m/it/10 model=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 GENERIC_SIM\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 740--740 \T1/ptm/m/it/10 con- Underfull \hbox (badness 10000) in paragraph at lines 740--740 \T1/ptm/m/it/10 fig_out=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 config.json\TS1/ptm/m /it/10 '\T1/ptm/m/n/10 , [11] Underfull \hbox (badness 10000) in paragraph at lines 783--783 \T1/ptm/m/it/10 name=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Erewhon\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 807--807 []\T1/ptm/m/it/10 tot_pop\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 807--807 \T1/ptm/m/it/10 num_nodes\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 816--816 []\T1/ptm/m/it/10 tot_pop=1000000\T1/ptm/m/n/10 , \T1/ptm/m/it/10 num_nodes=100 \T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 833--833 []\T1/ptm/m/it/10 pop_filename_in\T1/ptm/m/n/10 , Overfull \hbox (28.44351pt too wide) in paragraph at lines 833--833 \T1/ptm/m/it/10 pop_filename_out=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 spatial_grid ded_pop_dir\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 839--839 []\T1/ptm/m/it/10 nodes\T1/ptm/m/n/10 , \T1/ptm/m/it/10 idref=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Gridded Underfull \hbox (badness 10000) in paragraph at lines 839--839 \T1/ptm/m/it/10 world grump2.5arcmin\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , [12] Underfull \hbox (badness 10000) in paragraph at lines 1016--1016 []\T1/ptm/m/it/10 CrudeBirthRate=0.04\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Crude-Mor - [13] Underfull \hbox (badness 10000) in paragraph at lines 1105--1105 []\T1/ptm/m/it/10 file_male\T1/ptm/m/n/10 , \T1/ptm/m/it/10 file_female\T1/ptm/ m/n/10 , \T1/ptm/m/it/10 in-ter-val_fit=[1970, 1980]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1117--1117 []\T1/ptm/m/it/10 nodes=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1117--1117 \T1/ptm/m/it/10 meta_data: [][]dict[][] Overfull \hbox (7.52411pt too wide) in paragraph at lines 1117--1117 \T1/ptm/m/it/10 ual_attributes=None\T1/ptm/m/n/10 , Overfull \hbox (14.18416pt too wide) in paragraph at lines 1117--1117 \T1/ptm/m/it/10 node_attributes=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1117--1117 \T1/ptm/m/it/10 mor-tal- Overfull \hbox (16.5839pt too wide) in paragraph at lines 1117--1117 \T1/ptm/m/it/10 ity_distribution=None\T1/pcr/m/n/10 ) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pcr.fd) Overfull \hbox (18.60422pt too wide) in paragraph at lines 1178--1178 []\T1/ptm/m/it/10 res_in_arcsec\T1/pcr/m/n/10 ) [14] Overfull \hbox (13.07484pt too wide) in paragraph at lines 1197--1197 []\T1/ptm/m/it/10 nodes\T1/ptm/m/n/10 , Overfull \hbox (5.01491pt too wide) in paragraph at lines 1197--1197 \T1/ptm/m/it/10 con- Overfull \hbox (12.23463pt too wide) in paragraph at lines 1197--1197 \T1/ptm/m/it/10 cerns: Overfull \hbox (2.79494pt too wide) in paragraph at lines 1197--1197 \T1/ptm/m/it/10 Op- Overfull \hbox (457.54115pt too wide) in paragraph at lines 1197--1197 \T1/ptm/m/it/10 tional[Union[emod_api.dtk_tools.demographics.DemographicsGenera torConcern.DemographicsGeneratorConcern, Overfull \hbox (429.49101pt too wide) in paragraph at lines 1197--1197 \T1/ptm/m/it/10 List[emod_api.dtk_tools.demographics.DemographicsGeneratorConce rn.DemographicsGeneratorConcern]]] Underfull \hbox (badness 10000) in paragraph at lines 1197--1197 \T1/ptm/m/it/10 = Overfull \hbox (10.85487pt too wide) in paragraph at lines 1197--1197 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (84.4637pt too wide) in paragraph at lines 1197--1197 \T1/ptm/m/it/10 res_in_arcsec=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 custom\TS1/ptm/ m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (115.46402pt too wide) in paragraph at lines 1197--1197 \T1/ptm/m/it/10 node_id_from_lat_long=False\T1/pcr/m/n/10 ) [15] Underfull \hbox (badness 10000) in paragraph at lines 1282--1282 []\T1/ptm/m/it/10 df\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-mo-graph- Underfull \hbox (badness 10000) in paragraph at lines 1282--1282 \T1/ptm/m/it/10 ics_filename: Op- Underfull \hbox (badness 10000) in paragraph at lines 1282--1282 \T1/ptm/m/it/10 tional[[][]str[][]] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1282--1282 \T1/ptm/m/it/10 con-cerns: Op- Overfull \hbox (379.54115pt too wide) in paragraph at lines 1282--1282 \T1/ptm/m/it/10 tional[Union[emod_api.dtk_tools.demographics.DemographicsGenera torConcern.DemographicsGeneratorConcern, Overfull \hbox (351.49101pt too wide) in paragraph at lines 1282--1282 \T1/ptm/m/it/10 List[emod_api.dtk_tools.demographics.DemographicsGeneratorConce rn.DemographicsGeneratorConcern]]] Underfull \hbox (badness 10000) in paragraph at lines 1282--1282 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Overfull \hbox (6.4637pt too wide) in paragraph at lines 1282--1282 \T1/ptm/m/it/10 res_in_arcsec=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 custom\TS1/ptm/ m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (30.83415pt too wide) in paragraph at lines 1282--1282 \T1/ptm/m/it/10 node_id_from_lat_long=True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1282--1282 \T1/ptm/m/it/10 de-fault_population: Underfull \hbox (badness 10000) in paragraph at lines 1282--1282 [][]\T1/ptm/m/it/10 int[][] = 1000\T1/ptm/m/n/10 , Overfull \hbox (79.21327pt too wide) in paragraph at lines 1282--1282 \T1/ptm/m/it/10 load_other_columns_as_attributes=False\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1282--1282 \T1/ptm/m/it/10 tional[List[[][]str[][]]] Underfull \hbox (badness 10000) in paragraph at lines 1282--1282 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ex- Underfull \hbox (badness 10000) in paragraph at lines 1282--1282 \T1/ptm/m/it/10 clude_columns: Underfull \hbox (badness 10000) in paragraph at lines 1282--1282 \T1/ptm/m/it/10 Op-tional[List[[][]str[][]]] Underfull \hbox (badness 10000) in paragraph at lines 1282--1282 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Overfull \hbox (0.89452pt too wide) in paragraph at lines 1282--1282 \T1/ptm/m/it/10 nodeid_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1282--1282 \T1/ptm/m/it/10 Op-tional[[][]str[][]] Underfull \hbox (badness 10000) in paragraph at lines 1282--1282 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lat-i- Underfull \hbox (badness 10000) in paragraph at lines 1282--1282 \T1/ptm/m/it/10 tude_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1282--1282 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 lat\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lon-gi- Underfull \hbox (badness 10000) in paragraph at lines 1282--1282 \T1/ptm/m/it/10 tude_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1282--1282 \T1/ptm/m/it/10 tion_column_name: Overfull \hbox (54.94496pt too wide) in paragraph at lines 1297--1298 []\T1/pcr/b/n/10 apply. If not specified, we use the DefaultWorldBankEquilibriu mConcern [16] Underfull \hbox (badness 10000) in paragraph at lines 1345--1345 []\T1/ptm/m/it/10 population_input_file: Underfull \hbox (badness 10000) in paragraph at lines 1345--1345 [][]\T1/ptm/m/it/10 str[][]\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-mo-graph- Underfull \hbox (badness 7851) in paragraph at lines 1345--1345 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 con-cerns: Op- Overfull \hbox (349.54115pt too wide) in paragraph at lines 1345--1345 \T1/ptm/m/it/10 tional[Union[emod_api.dtk_tools.demographics.DemographicsGenera torConcern.DemographicsGeneratorConcern, Overfull \hbox (321.49101pt too wide) in paragraph at lines 1345--1345 \T1/ptm/m/it/10 List[emod_api.dtk_tools.demographics.DemographicsGeneratorConce rn.DemographicsGeneratorConcern]]] Underfull \hbox (badness 10000) in paragraph at lines 1345--1345 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1345--1345 \T1/ptm/m/it/10 res_in_arcsec=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 custom\TS1/ptm/ m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (0.83415pt too wide) in paragraph at lines 1345--1345 \T1/ptm/m/it/10 node_id_from_lat_long=True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1345--1345 \T1/ptm/m/it/10 de-fault_population: Underfull \hbox (badness 10000) in paragraph at lines 1345--1345 [][]\T1/ptm/m/it/10 int[][] = 1000\T1/ptm/m/n/10 , Overfull \hbox (49.21327pt too wide) in paragraph at lines 1345--1345 \T1/ptm/m/it/10 load_other_columns_as_attributes=False\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1345--1345 \T1/ptm/m/it/10 in-clude_columns: Op- Underfull \hbox (badness 10000) in paragraph at lines 1345--1345 \T1/ptm/m/it/10 tional[List[[][]str[][]]] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1345--1345 \T1/ptm/m/it/10 ex-clude_columns: Op- Underfull \hbox (badness 10000) in paragraph at lines 1345--1345 \T1/ptm/m/it/10 tional[List[[][]str[][]]] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1345--1345 \T1/ptm/m/it/10 nodeid_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1345--1345 \T1/ptm/m/it/10 Op-tional[[][]str[][]] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1345--1345 \T1/ptm/m/it/10 lat-i-tude_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1345--1345 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 lat\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lon-gi- Underfull \hbox (badness 10000) in paragraph at lines 1345--1345 \T1/ptm/m/it/10 tude_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1345--1345 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 lon\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pop-u-la- Underfull \hbox (badness 6236) in paragraph at lines 1345--1345 \T1/ptm/m/it/10 tion_column_name: [][]str[][] = Overfull \hbox (54.94496pt too wide) in paragraph at lines 1360--1361 []\T1/pcr/b/n/10 apply. If not specified, we use the DefaultWorldBankEquilibriu mConcern [17] Overfull \hbox (6.3048pt too wide) in paragraph at lines 1416--1416 []\T1/ptm/m/it/10 lat\T1/ptm/m/n/10 , Overfull \hbox (13.5249pt too wide) in paragraph at lines 1416--1416 \T1/ptm/m/it/10 long\T1/ptm/m/n/10 , Overfull \hbox (115.34473pt too wide) in paragraph at lines 1416--1416 \T1/ptm/m/it/10 res=0.008333333333333333\T1/pcr/m/n/10 ) Overfull \hbox (37.09444pt too wide) in paragraph at lines 1422--1422 []\T1/ptm/m/it/10 nodelist\T1/pcr/m/n/10 ) Overfull \hbox (11.74474pt too wide) in paragraph at lines 1428--1428 []\T1/ptm/m/it/10 node_info\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1428--1428 \T1/ptm/m/it/10 De- Underfull \hbox (badness 10000) in paragraph at lines 1428--1428 \T1/ptm/m/it/10 moDf\T1/ptm/m/n/10 , Overfull \hbox (91.34473pt too wide) in paragraph at lines 1428--1428 \T1/ptm/m/it/10 res=0.008333333333333333\T1/pcr/m/n/10 ) Overfull \hbox (71.74474pt too wide) in paragraph at lines 1434--1434 []\T1/ptm/m/it/10 node_info\T1/ptm/m/n/10 , Overfull \hbox (41.2549pt too wide) in paragraph at lines 1434--1434 \T1/ptm/m/it/10 ex- Overfull \hbox (118.90427pt too wide) in paragraph at lines 1434--1434 \T1/ptm/m/it/10 tra_data_columns=[]\T1/ptm/m/n/10 , Overfull \hbox (151.34473pt too wide) in paragraph at lines 1434--1434 \T1/ptm/m/it/10 res=0.008333333333333333\T1/pcr/m/n/10 ) [18] Underfull \hbox (badness 10000) in paragraph at lines 1474--1476 []\T1/ptm/m/n/10 json ob-ject aka python dict that can be di-rectly passed to D e-mo-graph- Underfull \hbox (badness 10000) in paragraph at lines 1487--1487 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1487--1487 \T1/ptm/m/it/10 mean=0.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1499--1501 []\T1/ptm/m/n/10 json ob-ject aka python dict that can be di-rectly passed to D e-mo-graph- Underfull \hbox (badness 10000) in paragraph at lines 1512--1512 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1518--1520 []\T1/ptm/m/n/10 json ob-ject aka python dict that can be di-rectly passed to D e-mo-graph- Underfull \hbox (badness 10000) in paragraph at lines 1550--1550 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , \T1/ptm/m/it/10 low_prev\T1/ptm/m/n/10 , Underfull \hbox (badness 5091) in paragraph at lines 1550--1550 \T1/ptm/m/it/10 high_prev\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-scrip- [19] Overfull \hbox (22.30493pt too wide) in paragraph at lines 1562--1562 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Overfull \hbox (7.6847pt too wide) in paragraph at lines 1562--1562 \T1/ptm/m/it/10 set- Overfull \hbox (34.0548pt too wide) in paragraph at lines 1562--1562 \T1/ptm/m/it/10 ting=1.0\T1/pcr/m/n/10 ) Overfull \hbox (10.30493pt too wide) in paragraph at lines 1568--1568 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1568--1568 \T1/ptm/m/it/10 pro- Overfull \hbox (58.54413pt too wide) in paragraph at lines 1568--1568 \T1/ptm/m/it/10 tected_setting=0.0\T1/ptm/m/n/10 , Overfull \hbox (9.20457pt too wide) in paragraph at lines 1568--1568 \T1/ptm/m/it/10 thresh- Overfull \hbox (53.51486pt too wide) in paragraph at lines 1568--1568 \T1/ptm/m/it/10 old_age=1825.0\T1/pcr/m/n/10 ) Overfull \hbox (46.30493pt too wide) in paragraph at lines 1574--1574 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Overfull \hbox (42.23488pt too wide) in paragraph at lines 1574--1574 \T1/ptm/m/it/10 mean- Overfull \hbox (44.91478pt too wide) in paragraph at lines 1574--1574 \T1/ptm/m/it/10 AgeAt- Overfull \hbox (28.90492pt too wide) in paragraph at lines 1574--1574 \T1/ptm/m/it/10 In- Overfull \hbox (32.23474pt too wide) in paragraph at lines 1574--1574 \T1/ptm/m/it/10 fec- Overfull \hbox (58.0548pt too wide) in paragraph at lines 1574--1574 \T1/ptm/m/it/10 tion=2.5\T1/pcr/m/n/10 ) Overfull \hbox (55.80493pt too wide) in paragraph at lines 1580--1580 []\T1/ptm/m/it/10 demog\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1586--1586 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1586--1586 \T1/ptm/m/it/10 age_bins\T1/ptm/m/n/10 , Overfull \hbox (25.80493pt too wide) in paragraph at lines 1608--1608 []\T1/ptm/m/it/10 demog\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1626--1627 []\T1/pcr/b/n/10 "15-19", etc. up to "45-49", and a column named "Years" with [20] Overfull \hbox (12.76291pt too wide) in paragraph at lines 1695--1695 [][]\T1/ptm/m/n/10 emod_api.demographics.Node.Node.IndividualAttributes[][] Underfull \hbox (badness 10000) in paragraph at lines 1695--1695 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in-di-vid-ual_properties : Overfull \hbox (13.51294pt too wide) in paragraph at lines 1695--1695 [][]\T1/ptm/m/n/10 emod_api.demographics.Node.Node.IndividualProperties[][] Underfull \hbox (badness 10000) in paragraph at lines 1695--1695 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 node_attributes: Underfull \hbox (badness 10000) in paragraph at lines 1695--1695 [][]\T1/ptm/m/n/10 emod_api.demographics.Node.Node.NodeAttributes[][] Underfull \hbox (badness 10000) in paragraph at lines 1757--1757 []\T1/ptm/m/it/10 age_distribution_flag=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ag e_distribution1=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1757--1757 \T1/ptm/m/it/10 age_distribution2=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 age_dist ribution=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1757--1757 \T1/ptm/m/it/10 preva-lence_distribution_flag=None\T1/ptm/m/n/10 , \T1/ptm/m/it /10 preva- Underfull \hbox (badness 10000) in paragraph at lines 1757--1757 \T1/ptm/m/it/10 im-mu-nity_distribution2=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 r isk_distribution_flag=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1757--1757 \T1/ptm/m/it/10 risk_distribution1=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 risk_di stribution2=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 mi- Underfull \hbox (badness 10000) in paragraph at lines 1757--1757 \T1/ptm/m/it/10 gra-tion_heterogeneity_distribution_flag=None\T1/ptm/m/n/10 , \ T1/ptm/m/it/10 mi- Underfull \hbox (badness 10000) in paragraph at lines 1757--1757 \T1/ptm/m/it/10 gra-tion_heterogeneity_distribution1=None\T1/ptm/m/n/10 , \T1/p tm/m/it/10 mi-gra- Underfull \hbox (badness 10000) in paragraph at lines 1757--1757 \T1/ptm/m/it/10 tion_heterogeneity_distribution2=None\T1/ptm/m/n/10 , \T1/ptm/m /it/10 mor-tal- Underfull \hbox (badness 7256) in paragraph at lines 1762--1762 []\T1/ptm/m/it/10 distribution_values: List[[][]float[][]] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- [21] Underfull \hbox (badness 10000) in paragraph at lines 1776--1776 []\T1/ptm/m/it/10 distribution_values=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-s ult_scale_factor=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 1796--1796 []\T1/ptm/m/it/10 axis_names: List[[][]str[][]] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1796--1796 \T1/ptm/m/it/10 axis_scale_factor: List[[][]float[][]] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1796--1796 \T1/ptm/m/it/10 axis_units=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 num_distributio n_axes=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1796--1796 \T1/ptm/m/it/10 num_population_axes=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1796--1796 \T1/ptm/m/it/10 num_population_groups=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pop- u-la- Underfull \hbox (badness 10000) in paragraph at lines 1796--1796 \T1/ptm/m/it/10 tion_groups=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-sult_scale_ factor=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Overfull \hbox (26.9222pt too wide) in paragraph at lines 1903--1903 []\T1/ptm/m/it/10 ind_attribute: [][]\T1/ptm/m/n/10 emod_api.demographics.Node. Node.IndividualAttributes[][]\T1/pcr/m/n/10 ) Overfull \hbox (34.08215pt too wide) in paragraph at lines 1909--1909 []\T1/ptm/m/it/10 ind_properties: [][]\T1/ptm/m/n/10 emod_api.demographics.Node .Node.IndividualProperties[][]\T1/pcr/m/n/10 ) [22] Overfull \hbox (22.9045pt too wide) in paragraph at lines 1940--1940 []\T1/ptm/m/it/10 nodeid\T1/ptm/m/n/10 , \T1/ptm/m/it/10 res_in_deg=0.041666666 666666664\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1946--1946 []\T1/ptm/m/it/10 lat\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lon\T1/ptm/m/n/10 , Overfull \hbox (9.16464pt too wide) in paragraph at lines 1946--1946 \T1/ptm/m/it/10 res_in_deg=0.041666666666666664\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1952--1952 []\T1/ptm/m/it/10 lat\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lon\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1981--1982 []\T1/pcr/b/n/10 distribution \T1/ptm/m/n/10 ^^U The se-lected dis-tri-bu-tion (need to come from Underfull \hbox (badness 10000) in paragraph at lines 2001--2001 []\T1/ptm/m/it/10 filename\T1/ptm/m/n/10 , \T1/ptm/m/it/10 dis-tri-bu-tion\T1/p tm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2002--2003 \T1/ptm/m/n/10 Set the \T1/pcr/m/n/10 ImmunityDistributionFlag\T1/ptm/m/n/10 , \T1/pcr/m/n/10 ImmunityDistribution1 \T1/ptm/m/n/10 and Underfull \hbox (badness 10000) in paragraph at lines 2029--2029 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2029--2029 \T1/ptm/m/it/10 fn\T1/ptm/m/n/10 , [23] Underfull \hbox (badness 10000) in paragraph at lines 2099--2099 []\T1/ptm/m/it/10 cb\T1/ptm/m/n/10 , Overfull \hbox (28.70406pt too wide) in paragraph at lines 2099--2099 \T1/ptm/m/it/10 use_existing=False\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 2125--2125 []\T1/ptm/m/it/10 cb\T1/ptm/m/n/10 , Overfull \hbox (34.70406pt too wide) in paragraph at lines 2125--2125 \T1/ptm/m/it/10 use_existing=False\T1/pcr/m/n/10 ) [24] Underfull \hbox (badness 10000) in paragraph at lines 2197--2197 []\T1/ptm/m/it/10 point\T1/ptm/m/n/10 , Overfull \hbox (37.41425pt too wide) in paragraph at lines 2197--2197 \T1/ptm/m/it/10 grid_id_2_cell_id\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2238--2238 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Event_Trigger\T1/ptm/m/n /10 , Overfull \hbox (73.22345pt too wide) in paragraph at lines 2238--2238 \T1/ptm/m/it/10 Node_Selection_Type=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 DISTANCE_ ONLY\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (57.50374pt too wide) in paragraph at lines 2238--2238 \T1/ptm/m/it/10 Max_Distance_To_Other_Nodes_Km=- [25] Underfull \hbox (badness 10000) in paragraph at lines 2273--2273 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 In-ter-ven- Underfull \hbox (badness 10000) in paragraph at lines 2316--2317 []\T1/pcr/b/n/10 but without the distribution, which is inferred. E.g., Underfull \hbox (badness 10000) in paragraph at lines 2337--2337 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Event_Or_Config=\TS1/ptm /m/it/10 '\T1/ptm/m/it/10 Event\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/ 10 Con-fig=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2337--2337 \T1/ptm/m/it/10 Event=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 NoTrigger\TS1/ptm/m/it/ 10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Ten-dency=1.0\T1/ptm/m/n/10 , \T1/ptm/m/it /10 Sin-gle_Use=True\T1/ptm/m/n/10 , [26] Underfull \hbox (badness 10000) in paragraph at lines 2381--2381 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Trig-gers\T1/ptm/m/n/10 , \T1/ptm/m/it/10 In-ter-ven-tions\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Prop- Underfull \hbox (badness 10000) in paragraph at lines 2381--2381 \T1/ptm/m/it/10 erty_Restrictions=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 De-mo- Underfull \hbox (badness 10000) in paragraph at lines 2381--2381 \T1/ptm/m/it/10 graphic_Coverage=1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar-get_Ag e_Min=0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar- Underfull \hbox (badness 10000) in paragraph at lines 2381--2381 \T1/ptm/m/it/10 get_Age_Max=45625\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar-get_Gende r=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 All\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/p tm/m/it/10 Tar- Underfull \hbox (badness 10000) in paragraph at lines 2381--2381 \T1/ptm/m/it/10 get_Residents_Only=1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Duration=- 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Black- Underfull \hbox (badness 10000) in paragraph at lines 2381--2381 \T1/ptm/m/it/10 out_Event_Trigger=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Blackout_Ev ent_Trigger\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Black- Underfull \hbox (badness 10000) in paragraph at lines 2381--2381 \T1/ptm/m/it/10 out_Period=0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Black-out_On_First _Occurrence=0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2443--2443 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar-get_Property_Key\T1/ ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2443--2443 \T1/ptm/m/it/10 Tar-get_Property_Value\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2443--2443 \T1/ptm/m/it/10 New_Property_Value\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2443--2443 \T1/ptm/m/it/10 Daily_Probability=1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Max-i- Underfull \hbox (badness 10000) in paragraph at lines 2443--2443 \T1/ptm/m/it/10 In-ter-ven-tion_Name=\TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2443--2443 \T1/ptm/m/it/10 Event_Trigger_Distributed=\TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , [27] Underfull \hbox (badness 10000) in paragraph at lines 2463--2463 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Start_Day\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Node- Underfull \hbox (badness 10000) in paragraph at lines 2463--2463 \T1/ptm/m/it/10 set_Config=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Num- Underfull \hbox (badness 10000) in paragraph at lines 2463--2463 \T1/ptm/m/it/10 ber_Repetitions=1\T1/ptm/m/n/10 , Overfull \hbox (11.65335pt too wide) in paragraph at lines 2463--2463 \T1/ptm/m/it/10 Timesteps_Between_Repetitions=- Underfull \hbox (badness 10000) in paragraph at lines 2463--2463 \T1/ptm/m/it/10 1\T1/ptm/m/n/10 , Overfull \hbox (53.26375pt too wide) in paragraph at lines 2463--2463 \T1/ptm/m/it/10 Event_Name=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Scheduled_Campaign _Event\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2463--2463 \T1/ptm/m/it/10 Prop-erty_Restrictions=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2463--2463 \T1/ptm/m/it/10 De-mo-graphic_Coverage=1.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2463--2463 \T1/ptm/m/it/10 Tar-get_Age_Min=0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar- Underfull \hbox (badness 10000) in paragraph at lines 2463--2463 \T1/ptm/m/it/10 get_Age_Max=45625\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar- Underfull \hbox (badness 10000) in paragraph at lines 2463--2463 \T1/ptm/m/it/10 get_Gender=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 All\TS1/ptm/m/it/1 0 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 In-ter-ven- [28] Underfull \hbox (badness 10000) in paragraph at lines 2523--2523 \T1/ptm/m/it/10 Trig-gers\T1/ptm/m/n/10 , \T1/ptm/m/it/10 In-ter-ven-tion_List\ T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2523--2523 \T1/ptm/m/it/10 Node-set_Config=None\T1/ptm/m/n/10 , Overfull \hbox (17.59343pt too wide) in paragraph at lines 2523--2523 \T1/ptm/m/it/10 Node_Property_Restrictions=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2523--2523 \T1/ptm/m/it/10 Prop-erty_Restrictions=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2523--2523 \T1/ptm/m/it/10 Num-ber_Repetitions=1\T1/ptm/m/n/10 , Overfull \hbox (11.65335pt too wide) in paragraph at lines 2523--2523 \T1/ptm/m/it/10 Timesteps_Between_Repetitions=- Underfull \hbox (badness 10000) in paragraph at lines 2523--2523 \T1/ptm/m/it/10 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 De-mo- Underfull \hbox (badness 10000) in paragraph at lines 2523--2523 \T1/ptm/m/it/10 graphic_Coverage=1.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2523--2523 \T1/ptm/m/it/10 Tar-get_Age_Min=0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar- Underfull \hbox (badness 10000) in paragraph at lines 2523--2523 \T1/ptm/m/it/10 get_Age_Max=45625\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2523--2523 \T1/ptm/m/it/10 Tar-get_Gender=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 All\TS1/ptm/m/ it/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar- Underfull \hbox (badness 10000) in paragraph at lines 2523--2523 \T1/ptm/m/it/10 get_Residents_Only=1\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2523--2523 \T1/ptm/m/it/10 Duration=- 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Black- Overfull \hbox (59.96321pt too wide) in paragraph at lines 2523--2523 \T1/ptm/m/it/10 out_Event_Trigger=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Blackout_Ev ent_Trigger\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2523--2523 \T1/ptm/m/it/10 Black-out_Period=0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Black- Underfull \hbox (badness 10000) in paragraph at lines 2523--2523 \T1/ptm/m/it/10 out_On_First_Occurrence=0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2523--2523 \T1/ptm/m/it/10 Dis-qual-i-fy- Underfull \hbox (badness 10000) in paragraph at lines 2523--2523 \T1/ptm/m/it/10 ing_Properties=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 De- [29] Underfull \hbox (badness 10000) in paragraph at lines 2604--2604 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Base_Sensitivity=1\T1/pt m/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2604--2604 \T1/ptm/m/it/10 Base_Specificity=1\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2604--2604 \T1/ptm/m/it/10 Days_To_Diagnosis=0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2604--2604 \T1/ptm/m/it/10 Treat-ment_Fraction=1\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2651--2651 \T1/ptm/m/it/10 pro-file=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 CONST\TS1/ptm/m/it/1 0 '\T1/ptm/m/n/10 , ! LaTeX Error: Too deeply nested. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.2660 ...{CONST(ANT)}] \leavevmode\begin{itemize} [30] Underfull \hbox (badness 10000) in paragraph at lines 2722--2722 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day=1\T1/ptm/m/n/1 0 , Underfull \hbox (badness 10000) in paragraph at lines 2722--2722 \T1/ptm/m/it/10 new_infectivity=1.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2722--2722 \T1/ptm/m/it/10 pro-file=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 CONST\TS1/ptm/m/it/1 0 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2722--2722 \T1/ptm/m/it/10 node_ids=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2722--2722 \T1/ptm/m/it/10 re-cur-ring=True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2730--2730 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2750--2750 []\T1/ptm/m/it/10 campaign_builder\T1/ptm/m/n/10 , \T1/ptm/m/it/10 timestep\T1/ ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2784--2784 \T1/ptm/m/it/10 ef-fi-cacy=1.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2784--2784 \T1/ptm/m/it/10 sv_name=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Vaccine\TS1/ptm/m/it/ 10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2784--2784 \T1/ptm/m/it/10 wan-ing_duration=100\T1/ptm/m/n/10 , [31] Underfull \hbox (badness 10000) in paragraph at lines 2805--2805 []\T1/ptm/m/it/10 timestep\T1/ptm/m/n/10 , \T1/ptm/m/it/10 file- Underfull \hbox (badness 10000) in paragraph at lines 2822--2822 []\T1/ptm/m/it/10 schema_path\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ini-tial=1.0\T1/p tm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2822--2822 \T1/ptm/m/it/10 box_duration=365\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de- [32] Underfull \hbox (badness 5548) in paragraph at lines 2929--2932 []\T1/ptm/m/n/10 EMOD/DTK for-mat mi-gra-tion files (and as-so-ci-ated meta-dat a files) can be writ-ten with mi-gra- [33] [34] Underfull \hbox (badness 10000) in paragraph at lines 3195--3195 \T1/ptm/m/it/10 num_nodes=100\T1/ptm/m/n/10 , \T1/ptm/m/it/10 mig_factor=1.0\T1 /ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3195--3195 \T1/ptm/m/it/10 frac_rural=0.3\T1/ptm/m/n/10 , \T1/ptm/m/it/10 id_ref=\TS1/ptm/ m/it/10 '\T1/ptm/m/it/10 from_params\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm/ m/it/10 mi- Overfull \hbox (68.98433pt too wide) in paragraph at lines 3206--3206 []\T1/ptm/m/it/10 demographics_file_path: Underfull \hbox (badness 10000) in paragraph at lines 3206--3206 [][]\T1/ptm/m/it/10 str[][]\T1/ptm/m/n/10 , Overfull \hbox (2.42482pt too wide) in paragraph at lines 3206--3206 \T1/ptm/m/it/10 params: Underfull \hbox (badness 10000) in paragraph at lines 3206--3206 [][]\T1/ptm/m/it/10 str[][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3206--3206 \T1/ptm/m/it/10 id_ref: Underfull \hbox (badness 10000) in paragraph at lines 3206--3206 [][]\T1/ptm/m/it/10 str[][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3206--3206 \T1/ptm/m/it/10 mi-gra- Overfull \hbox (24.21457pt too wide) in paragraph at lines 3206--3206 \T1/ptm/m/it/10 tion_type=1\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 3206--3206 \OMS/cmsy/m/n/10 !$ Overfull \hbox (135.19371pt too wide) in paragraph at lines 3206--3206 [][]\T1/ptm/m/it/10 emod_api.migration.migration.Migration[][] Overfull \hbox (2.15437pt too wide) in paragraph at lines 3234--3234 []\T1/ptm/m/it/10 demographics_file_path\T1/ptm/m/n/10 , [35] Overfull \hbox (24.70302pt too wide) in paragraph at lines 3272--3272 []\T1/ptm/m/it/10 path_to_binary\T1/ptm/m/n/10 , \T1/ptm/m/it/10 path_to_write_ schema=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 schema.json\TS1/ptm/m/it/10 '\T1/pcr/m /n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 3293--3293 []\T1/ptm/m/it/10 input_serpop_path\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3293--3293 \T1/ptm/m/it/10 mod_fn=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3314--3314 []\T1/ptm/m/it/10 file: [36] [37] Underfull \hbox (badness 10000) in paragraph at lines 3440--3440 []\T1/ptm/m/it/10 name: [][]str[][]\T1/ptm/m/n/10 , \T1/ptm/m/it/10 han-dle\T1/ ptm/m/n/10 , \T1/ptm/m/it/10 cur- Underfull \hbox (badness 10000) in paragraph at lines 3475--3475 []\T1/ptm/m/it/10 handle\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cur- [38] Underfull \hbox (badness 6493) in paragraph at lines 3604--3604 \T1/ptm/m/it/10 True, \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 date\TS1/ptm/m/it/10 '\ T1/ptm/m/it/10 : \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Mon Oct 25 Underfull \hbox (badness 5050) in paragraph at lines 3604--3604 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 tool\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 : \TS1/ ptm/m/it/10 '\T1/ptm/m/it/10 dtk-File-Tools.py\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 , \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 ver- [39] [40] Underfull \hbox (badness 10000) in paragraph at lines 3838--3838 \T1/ptm/m/it/10 List[[][]int[][]] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 data: Underfull \hbox (badness 10000) in paragraph at lines 3838--3838 \T1/ptm/m/it/10 numpy.array = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start: [41] [42] [43] [44] [45] [46] Chapter 4. [47] [48] Overfull \hbox (66.6225pt too wide) in paragraph at lines 4377--4378 []\T1/pcr/m/n/10 emod_api.config.default_from_schema_no_validation\T1/ptm/m/n/1 0 , Overfull \hbox (36.6225pt too wide) in paragraph at lines 4378--4379 []\T1/pcr/m/n/10 emod_api.config.dtk_post_process_adhocevents\T1/ptm/m/n/10 , Overfull \hbox (30.6225pt too wide) in paragraph at lines 4379--4380 []\T1/pcr/m/n/10 emod_api.config.dtk_pre_process_adhocevents\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4380--4381 []\T1/pcr/m/n/10 emod_api.config.dtk_pre_process_w5ml\T1/ptm/m/n/10 , Overfull \hbox (12.6225pt too wide) in paragraph at lines 4388--4389 []\T1/pcr/m/n/10 emod_api.demographics.demographics_utils\T1/ptm/m/n/10 , Overfull \hbox (30.6225pt too wide) in paragraph at lines 4389--4390 []\T1/pcr/m/n/10 emod_api.demographics.DemographicsGenerator\T1/ptm/m/n/10 , Overfull \hbox (72.6225pt too wide) in paragraph at lines 4390--4391 []\T1/pcr/m/n/10 emod_api.demographics.DemographicsInputDataParsers\T1/ptm/m/n/ 10 , Overfull \hbox (30.6225pt too wide) in paragraph at lines 4391--4392 []\T1/pcr/m/n/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 , Overfull \hbox (6.6225pt too wide) in paragraph at lines 4392--4393 []\T1/pcr/m/n/10 emod_api.demographics.grid_construction\T1/ptm/m/n/10 , Overfull \hbox (0.6225pt too wide) in paragraph at lines 4396--4397 []\T1/pcr/m/n/10 emod_api.interventions.import_pressure\T1/ptm/m/n/10 , Overfull \hbox (0.6225pt too wide) in paragraph at lines 4397--4398 []\T1/pcr/m/n/10 emod_api.interventions.node_multiplier\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4399--4400 []\T1/pcr/m/n/10 emod_api.interventions.simple_vaccine\T1/ptm/m/n/10 , Overfull \hbox (6.6225pt too wide) in paragraph at lines 4406--4407 []\T1/pcr/m/n/10 emod_api.schema.dtk_post_process_schema\T1/ptm/m/n/10 , Overfull \hbox (0.6225pt too wide) in paragraph at lines 4410--4411 []\T1/pcr/m/n/10 emod_api.serialization.CensusAndModPop\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4411--4412 []\T1/pcr/m/n/10 emod_api.serialization.dtkFileSupport\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4413--4414 []\T1/pcr/m/n/10 emod_api.serialization.dtkFileUtility\T1/ptm/m/n/10 , Overfull \hbox (30.6225pt too wide) in paragraph at lines 4414--4415 []\T1/pcr/m/n/10 emod_api.serialization.SerializedPopulation\T1/ptm/m/n/10 , [49] (./institute-for-disease-modeling-emod-api.ind [50] Overfull \hbox (36.00078pt too wide) in paragraph at lines 8--10 []\T1/pcr/m/n/10 add() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.No de.Node.IndividualProperties Overfull \hbox (96.00078pt too wide) in paragraph at lines 11--13 []\T1/pcr/m/n/10 add_parameter() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demog raphics.Node.Node.IndividualProperties Overfull \hbox (36.32152pt too wide) in paragraph at lines 13--15 []\T1/pcr/m/n/10 add_parameter() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demog raphics.Node.Updateable Underfull \hbox (badness 10000) in paragraph at lines 15--17 []\T1/pcr/m/n/10 AddAgeDependentTransmission() Overfull \hbox (34.06111pt too wide) in paragraph at lines 15--17 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 17--19 []\T1/pcr/m/n/10 AddIndividualPropertyAndHINT() Overfull \hbox (34.06111pt too wide) in paragraph at lines 17--19 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 19--21 []\T1/pcr/m/n/10 AgeStructureUNWPP() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (15.62103pt too wide) in paragraph at lines 19--21 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Overfull \hbox (7.30118pt too wide) in paragraph at lines 21--23 []\T1/pcr/m/n/10 AgesYears() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration .migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 23--24 []\T1/pcr/m/n/10 AIR \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.migrati on.Migration at- Overfull \hbox (37.49991pt too wide) in paragraph at lines 24--26 []\T1/pcr/m/n/10 append() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializatio n.dtkFileTools.DtkFile.Contents Overfull \hbox (32.4899pt too wide) in paragraph at lines 26--28 []\T1/pcr/m/n/10 append() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializatio n.dtkFileTools.DtkFile.Objects Underfull \hbox (badness 10000) in paragraph at lines 28--30 []\T1/pcr/m/n/10 application() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (7.95116pt too wide) in paragraph at lines 28--30 \T1/ptm/m/it/10 emod_api.config.dtk_post_process_adhocevents\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 30--32 []\T1/pcr/m/n/10 application() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (4.2412pt too wide) in paragraph at lines 30--32 \T1/ptm/m/it/10 emod_api.config.dtk_pre_process_adhocevents\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 32--34 []\T1/pcr/m/n/10 application() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 32--34 \T1/ptm/m/it/10 emod_api.config.dtk_pre_process_w5ml\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 34--36 []\T1/pcr/m/n/10 application() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 34--36 \T1/ptm/m/it/10 emod_api.schema.dtk_post_process_schema\T1/ptm/m/n/10 ), Overfull \hbox (85.96114pt too wide) in paragraph at lines 36--38 []\T1/pcr/m/n/10 apply_overlay() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demog raphics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 38--40 []\T1/pcr/m/n/10 apply_to_defaults_or_nodes() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 i n mod-ule Underfull \hbox (badness 10000) in paragraph at lines 38--40 \T1/ptm/m/it/10 emod_api.demographics.demographics_utils\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 40--42 []\T1/pcr/m/n/10 arcsec_to_deg() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (17.1711pt too wide) in paragraph at lines 40--42 \T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/ptm/m/n/10 ), Overfull \hbox (62.83089pt too wide) in paragraph at lines 42--44 []\T1/pcr/m/n/10 as_dataframe() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channe lreports.channels.ChannelReport Overfull \hbox (41.61118pt too wide) in paragraph at lines 44--46 []\T1/pcr/m/n/10 as_dictionary() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.chann elreports.channels.Channel Overfull \hbox (37.71117pt too wide) in paragraph at lines 46--48 []\T1/pcr/m/n/10 as_dictionary() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.chann elreports.channels.Header Underfull \hbox (badness 10000) in paragraph at lines 50--52 []\T1/pcr/m/n/10 Author() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.mi gration.Migration Underfull \hbox (badness 10000) in paragraph at lines 59--61 []\T1/pcr/m/n/10 BaseInputFile \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 59--61 \T1/ptm/m/it/10 emod_api.demographics.BaseInputFile\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 61--62 []\T1/pcr/m/n/10 basicNode() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 62--64 []\T1/pcr/m/n/10 BroadcastEvent() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 64--66 []\T1/pcr/m/n/10 BroadcastEventToOtherNodes() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 i n mod-ule Overfull \hbox (23.59027pt too wide) in paragraph at lines 67--69 []\T1/pcr/m/n/10 byte_count() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializ ation.dtkFileTools.DtkFile Underfull \hbox (badness 10000) in paragraph at lines 72--74 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10000) in paragraph at lines 126--128 []\T1/pcr/m/n/10 date() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serialization. dtkFileTools.DtkFile Overfull \hbox (19.30118pt too wide) in paragraph at lines 128--130 []\T1/pcr/m/n/10 DateCreated() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migrati on.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 130--132 []\T1/pcr/m/n/10 default_population Underfull \hbox (badness 10000) in paragraph at lines 130--132 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Node.Node at- Underfull \hbox (badness 7291) in paragraph at lines 132--134 []\T1/pcr/m/n/10 DefaultSusceptibilityDistribution() \T1/ptm/m/n/10 (\T1/ptm/m/ it/10 in Overfull \hbox (46.96086pt too wide) in paragraph at lines 132--134 \T1/ptm/m/it/10 mod-ule emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/ 10 ), Underfull \hbox (badness 10000) in paragraph at lines 134--136 []\T1/pcr/m/n/10 DelayedIntervention() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 136--138 []\T1/pcr/m/n/10 Demographics \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 136--138 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 138--140 []\T1/pcr/m/n/10 DemographicsGenerator \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Overfull \hbox (17.1711pt too wide) in paragraph at lines 138--140 \T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 140--142 []\T1/pcr/m/n/10 DemographicsOverlay \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 140--142 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 142--144 []\T1/pcr/m/n/10 DemographicsType \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Overfull \hbox (17.1711pt too wide) in paragraph at lines 142--144 \T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 144--146 []\T1/pcr/m/n/10 do_mapping_from_events() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule Overfull \hbox (4.2412pt too wide) in paragraph at lines 144--146 \T1/ptm/m/it/10 emod_api.config.dtk_pre_process_adhocevents\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 147--149 []\T1/pcr/m/n/10 dtk_to_schema() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (56.83089pt too wide) in paragraph at lines 149--151 []\T1/pcr/m/n/10 dtk_version() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channel reports.channels.ChannelReport Overfull \hbox (25.71117pt too wide) in paragraph at lines 151--153 []\T1/pcr/m/n/10 dtk_version() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channel reports.channels.Header Underfull \hbox (badness 10000) in paragraph at lines 154--156 []\T1/pcr/m/n/10 DtkFile.Contents \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 156--158 []\T1/pcr/m/n/10 DtkFile.Objects \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 158--160 []\T1/pcr/m/n/10 DtkFileV1 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 160--162 []\T1/pcr/m/n/10 DtkFileV2 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 162--164 []\T1/pcr/m/n/10 DtkFileV2.NodesV2 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 164--166 []\T1/pcr/m/n/10 DtkFileV3 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 166--168 []\T1/pcr/m/n/10 DtkFileV3.NodesV3 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 168--170 []\T1/pcr/m/n/10 DtkFileV4 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 170--172 []\T1/pcr/m/n/10 DtkHeader \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in [52] Underfull \hbox (badness 10000) in paragraph at lines 172--174 []\T1/pcr/m/n/10 duplicate_nodeID_check() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule Overfull \hbox (46.65079pt too wide) in paragraph at lines 172--174 \T1/ptm/m/it/10 emod_api.demographics.DemographicsInputDataParsers\T1/ptm/m/n/1 0 ), Underfull \hbox (badness 10000) in paragraph at lines 177--179 []\T1/pcr/m/n/10 EllZeeFour \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Overfull \hbox (64.1225pt too wide) in paragraph at lines 191--192 []\T1/pcr/m/n/10 emod_api.config.default_from_schema_no_validation Overfull \hbox (34.1225pt too wide) in paragraph at lines 193--194 []\T1/pcr/m/n/10 emod_api.config.dtk_post_process_adhocevents Overfull \hbox (28.1225pt too wide) in paragraph at lines 195--196 []\T1/pcr/m/n/10 emod_api.config.dtk_pre_process_adhocevents Overfull \hbox (10.1225pt too wide) in paragraph at lines 213--214 []\T1/pcr/m/n/10 emod_api.demographics.demographics_utils Overfull \hbox (28.1225pt too wide) in paragraph at lines 215--216 []\T1/pcr/m/n/10 emod_api.demographics.DemographicsGenerator Overfull \hbox (70.1225pt too wide) in paragraph at lines 217--218 []\T1/pcr/m/n/10 emod_api.demographics.DemographicsInputDataParsers Overfull \hbox (28.1225pt too wide) in paragraph at lines 219--220 []\T1/pcr/m/n/10 emod_api.demographics.DemographicsTemplates Overfull \hbox (4.1225pt too wide) in paragraph at lines 221--222 []\T1/pcr/m/n/10 emod_api.demographics.grid_construction Overfull \hbox (4.1225pt too wide) in paragraph at lines 249--250 []\T1/pcr/m/n/10 emod_api.schema.dtk_post_process_schema Overfull \hbox (28.1225pt too wide) in paragraph at lines 265--266 []\T1/pcr/m/n/10 emod_api.serialization.SerializedPopulation Overfull \hbox (15.62103pt too wide) in paragraph at lines 277--279 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), [53] Underfull \hbox (badness 10000) in paragraph at lines 279--281 []\T1/pcr/m/n/10 examine_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 289--291 []\T1/pcr/m/n/10 fill_nodes_legacy() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (46.65079pt too wide) in paragraph at lines 289--291 \T1/ptm/m/it/10 emod_api.demographics.DemographicsInputDataParsers\T1/ptm/m/n/1 0 ), Overfull \hbox (4.62106pt too wide) in paragraph at lines 291--293 []\T1/pcr/m/n/10 finalize() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.schema_to_ class.ReadOnlyDict Overfull \hbox (36.30013pt too wide) in paragraph at lines 293--295 []\T1/pcr/m/n/10 find() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule emod_api.ser ialization.SerializedPopulation\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 295--297 []\T1/pcr/m/n/10 flattenConfig() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (81.59949pt too wide) in paragraph at lines 297--299 []\T1/pcr/m/n/10 flush() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serialization .SerializedPopulation.SerializedPopulation Underfull \hbox (badness 10000) in paragraph at lines 301--303 []\T1/pcr/m/n/10 from_csv() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 301--303 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 303--305 []\T1/pcr/m/n/10 from_data() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demograph ics.Node.Node Underfull \hbox (badness 10000) in paragraph at lines 305--307 []\T1/pcr/m/n/10 from_dataframe() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (17.1711pt too wide) in paragraph at lines 305--307 \T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/ptm/m/n/10 ), Overfull \hbox (16.1225pt too wide) in paragraph at lines 309--311 []\T1/pcr/m/n/10 from_demog_and_param_gravity_webservice() Overfull \hbox (69.48074pt too wide) in paragraph at lines 311--313 []\T1/pcr/m/n/10 from_dict() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demograph ics.Node.Node.IndividualAttributes Overfull \hbox (136.12994pt too wide) in paragraph at lines 313--315 []\T1/pcr/m/n/10 from_dict() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demograph ics.Node.Node.IndividualAttributes.AgeDistribution Overfull \hbox (158.45937pt too wide) in paragraph at lines 315--317 []\T1/pcr/m/n/10 from_dict() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demograph ics.Node.Node.IndividualAttributes.MortalityDistribution Overfull \hbox (49.48103pt too wide) in paragraph at lines 317--319 []\T1/pcr/m/n/10 from_dict() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demograph ics.Node.Node.NodeAttributes Underfull \hbox (badness 10000) in paragraph at lines 319--321 []\T1/pcr/m/n/10 from_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.weather.w eather.Metadata Underfull \hbox (badness 10000) in paragraph at lines 321--323 []\T1/pcr/m/n/10 from_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 321--323 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 323--325 []\T1/pcr/m/n/10 from_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (17.1711pt too wide) in paragraph at lines 323--325 \T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 325--326 []\T1/pcr/m/n/10 from_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 326--328 []\T1/pcr/m/n/10 from_params() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 326--328 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 328--329 []\T1/pcr/m/n/10 from_params() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 329--331 []\T1/pcr/m/n/10 from_pop_csv() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 329--331 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 331--333 []\T1/pcr/m/n/10 from_template_node() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 331--333 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 333--335 []\T1/pcr/m/n/10 FullRisk() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (15.62103pt too wide) in paragraph at lines 333--335 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Overfull \hbox (37.30118pt too wide) in paragraph at lines 338--340 []\T1/pcr/m/n/10 GenderDataType() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migr ation.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 340--342 []\T1/pcr/m/n/10 generate_demographics() Overfull \hbox (115.97037pt too wide) in paragraph at lines 340--342 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator.Dem ographicsGenerator Overfull \hbox (80.97084pt too wide) in paragraph at lines 342--344 []\T1/pcr/m/n/10 generate_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demog raphics.BaseInputFile.BaseInputFile Overfull \hbox (85.96114pt too wide) in paragraph at lines 344--346 []\T1/pcr/m/n/10 generate_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demog raphics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 346--348 []\T1/pcr/m/n/10 generate_headers() Overfull \hbox (29.07082pt too wide) in paragraph at lines 346--348 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.BaseInputFile.BaseInputFi le Underfull \hbox (badness 10000) in paragraph at lines 348--350 []\T1/pcr/m/n/10 generate_metadata() Overfull \hbox (115.97037pt too wide) in paragraph at lines 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(\T1/ptm/m/it/10 in mod-ule Overfull \hbox (15.62103pt too wide) in paragraph at lines 362--364 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 364--366 []\T1/pcr/m/n/10 get_grid_cell_id() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 364--366 \T1/ptm/m/it/10 emod_api.demographics.grid_construction\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 366--368 []\T1/pcr/m/n/10 get_next_individual_suid() Overfull \hbox (77.69946pt too wide) in paragraph at lines 366--368 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serialization.SerializedPopulation.Ser ializedPopulation Underfull \hbox (badness 10000) in paragraph at lines 368--370 []\T1/pcr/m/n/10 get_next_infection_suid() Overfull \hbox (77.69946pt too wide) in paragraph at lines 368--370 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serialization.SerializedPopulation.Ser ializedPopulation [54] Overfull \hbox (55.96114pt too wide) in paragraph at lines 370--372 []\T1/pcr/m/n/10 get_node() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographi cs.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 372--374 []\T1/pcr/m/n/10 get_node_ids_from_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 372--374 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 374--376 []\T1/pcr/m/n/10 get_node_offsets() Underfull \hbox (badness 10000) in paragraph at lines 374--376 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 376--378 []\T1/pcr/m/n/10 get_node_pops_from_params() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 378--380 []\T1/pcr/m/n/10 get_parameters() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 378--380 \T1/ptm/m/it/10 emod_api.serialization.SerializedPopulation\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 380--381 []\T1/pcr/m/n/10 get_recv_trigger() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 382--383 []\T1/pcr/m/n/10 get_send_trigger() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 383--384 []\T1/pcr/m/n/10 get_trigger_list() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 384--386 []\T1/pcr/m/n/10 get_waning_from_params() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 386--388 []\T1/pcr/m/n/10 get_xpix_ypix() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (26.83089pt too wide) in paragraph at lines 392--394 []\T1/pcr/m/n/10 header() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channelrepor ts.channels.ChannelReport Underfull \hbox (badness 10000) in paragraph at lines 403--405 []\T1/pcr/m/n/10 id() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.spatialreports.s patial.SpatialNode Underfull \hbox (badness 7308) in paragraph at lines 405--406 []\T1/pcr/m/n/10 id() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.weather.weather. WeatherNode prop- Overfull \hbox (6.84114pt too wide) in paragraph at lines 406--408 []\T1/pcr/m/n/10 id_reference() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.weathe r.weather.Metadata Overfull \hbox (1.47115pt too wide) in paragraph at lines 408--410 []\T1/pcr/m/n/10 id_reference() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.weathe r.weather.Weather Underfull \hbox (badness 10000) in paragraph at lines 410--412 []\T1/pcr/m/n/10 IDREF_GRUMP1DEGREE Underfull \hbox (badness 10000) in paragraph at lines 410--412 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 412--414 []\T1/pcr/m/n/10 IDREF_GRUMP2PT5ARCMIN Underfull \hbox (badness 10000) in paragraph at lines 412--414 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 414--416 []\T1/pcr/m/n/10 IDREF_GRUMP30ARCSEC Underfull \hbox (badness 10000) in paragraph at lines 414--416 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.migration.Migration Overfull \hbox (13.30058pt too wide) in paragraph at lines 416--418 []\T1/pcr/m/n/10 IDREF_LEGACY \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migratio n.migration.Migration Overfull \hbox (19.30118pt too wide) in paragraph at lines 418--420 []\T1/pcr/m/n/10 IdReference() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migrati on.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 420--422 []\T1/pcr/m/n/10 infer_natural_mortality() Overfull \hbox (34.06111pt too wide) in paragraph at lines 420--422 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 422--424 []\T1/pcr/m/n/10 init_resolution_from_file() Underfull \hbox (badness 10000) in paragraph at lines 422--424 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Node.Node class Underfull \hbox (badness 10000) in paragraph at lines 424--426 []\T1/pcr/m/n/10 InitAgeUniform() 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emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 432--434 []\T1/pcr/m/n/10 InitRiskUniform() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (15.62103pt too wide) in paragraph at lines 432--434 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 434--436 []\T1/pcr/m/n/10 InitSusceptConstant() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-u le Overfull \hbox (15.62103pt too wide) in paragraph at lines 434--436 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 436--438 []\T1/pcr/m/n/10 InterpolationType() Underfull \hbox (badness 10000) in paragraph at lines 436--438 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.migration.Migration Overfull \hbox (20.8303pt too wide) in paragraph at lines 438--440 []\T1/pcr/m/n/10 interval() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 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10000) in paragraph at lines 549--551 []\T1/pcr/m/n/10 new_intervention_as_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 551--553 []\T1/pcr/m/n/10 new_intervention_as_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 553--555 []\T1/pcr/m/n/10 new_intervention_as_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 555--557 []\T1/pcr/m/n/10 new_scheduled_event() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 555--557 \T1/ptm/m/it/10 emod_api.interventions.node_multiplier\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 559--561 []\T1/pcr/m/n/10 Node.IndividualAttributes \T1/ptm/m/n/10 (\T1/ptm/m/it/10 clas s in Overfull \hbox (16.1225pt too wide) in paragraph at lines 561--563 []\T1/pcr/m/n/10 Node.IndividualAttributes.AgeDistribution Overfull \hbox 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lines 620--622 []\T1/pcr/m/n/10 num_channels() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channe lreports.channels.Header Overfull \hbox (74.83089pt too wide) in paragraph at lines 622--624 []\T1/pcr/m/n/10 num_time_steps() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.chan nelreports.channels.ChannelReport Overfull \hbox (43.71117pt too wide) in paragraph at lines 624--626 []\T1/pcr/m/n/10 num_time_steps() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.chan nelreports.channels.Header Underfull \hbox (badness 10000) in paragraph at lines 629--631 []\T1/pcr/m/n/10 ONE_FOR_EACH_GENDER Underfull \hbox (badness 10000) in paragraph at lines 629--631 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 631--632 []\T1/pcr/m/n/10 OverlayNode \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in [57] Underfull \hbox (badness 10000) in paragraph at lines 635--637 []\T1/pcr/m/n/10 PIECEWISE_CONSTANT Underfull \hbox (badness 10000) in paragraph at 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emod_api.demogr aphics.Node.Node Underfull \hbox (badness 10000) in paragraph at lines 670--672 []\T1/pcr/m/n/10 SAME_FOR_BOTH_GENDERS Underfull \hbox (badness 10000) in paragraph at lines 670--672 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 673--675 []\T1/pcr/m/n/10 ScheduledCampaignEvent() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 675--677 []\T1/pcr/m/n/10 schema_to_config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 675--677 \T1/ptm/m/it/10 emod_api.config.from_poi_and_binary\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 677--679 []\T1/pcr/m/n/10 schema_to_config_subnode() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (31.30106pt too wide) in paragraph at lines 677--679 \T1/ptm/m/it/10 emod_api.config.default_from_schema_no_validation\T1/ptm/m/n/10 ), 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paragraph at lines 709--711 \T1/ptm/m/it/10 emod_api.config.from_poi_and_binary\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 711--713 []\T1/pcr/m/n/10 set_static_demographics() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in m od-ule Underfull \hbox (badness 10000) in paragraph at lines 711--713 \T1/ptm/m/it/10 emod_api.demographics.demographics_utils\T1/ptm/m/n/10 ), Overfull \hbox (79.96114pt too wide) in paragraph at lines 713--715 []\T1/pcr/m/n/10 SetBirthRate() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demogr aphics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 715--717 []\T1/pcr/m/n/10 SetConstantRisk() Overfull \hbox (34.06111pt too wide) in paragraph at lines 715--717 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 717--719 []\T1/pcr/m/n/10 SetConstantSusceptibility() Overfull \hbox (34.06111pt too wide) in paragraph at lines 717--719 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SetHeteroRiskExponDist() Overfull \hbox (34.06111pt too wide) in paragraph at lines 733--735 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 735--737 []\T1/pcr/m/n/10 SetHeteroRiskLognormalDist() Overfull \hbox (34.06111pt too wide) in paragraph at lines 735--737 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 737--739 []\T1/pcr/m/n/10 SetHeteroRiskUniformDist() Overfull \hbox (34.06111pt too wide) in paragraph at lines 737--739 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 739--741 []\T1/pcr/m/n/10 SetIndividualAttributesWithFertMort() Overfull \hbox (34.06111pt too wide) in paragraph at lines 739--741 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at 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emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/ 10 ), Overfull \hbox (34.70026pt too wide) in paragraph at lines 757--759 []\T1/pcr/m/n/10 simulation() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializ ation.dtkFileTools.DtkFileV1 Overfull \hbox (34.70026pt too wide) in paragraph at lines 759--761 []\T1/pcr/m/n/10 simulation() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializ ation.dtkFileTools.DtkFileV2 Overfull \hbox (34.70026pt too wide) in paragraph at lines 761--763 []\T1/pcr/m/n/10 simulation() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializ ation.dtkFileTools.DtkFileV3 Overfull \hbox (2.94016pt too wide) in paragraph at lines 763--764 []\T1/pcr/m/n/10 Snappy \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in emod_api.seria lization.dtkFileSupport\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 764--765 []\T1/pcr/m/n/10 SpatialNode \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 765--767 []\T1/pcr/m/n/10 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