Read the Docs build information Build id: 730362 Project: institute-for-disease-modeling-emodpy-malaria Version: latest Commit: b50aef4f5b1d31cd1ee136b203e6d1e19b503cc3 Date: 2021-09-25T00:41:08.118893Z State: finished Success: True [rtd-command-info] start-time: 2021-09-25T00:41:09.589674Z, end-time: 2021-09-25T00:41:12.021579Z, duration: 2, exit-code: 0 git clone --no-single-branch --depth 50 git@github.com:InstituteforDiseaseModeling/emodpy-malaria.git . Cloning into '.'... Warning: Permanently added 'github.com,192.30.255.113' (RSA) to the list of known hosts. [rtd-command-info] start-time: 2021-09-25T00:41:12.148224Z, end-time: 2021-09-25T00:41:12.229170Z, duration: 0, exit-code: 0 git checkout --force origin/main Note: checking out 'origin/main'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at b50aef4 Merge pull request #299 from jgsuresh/main [rtd-command-info] start-time: 2021-09-25T00:41:12.354437Z, end-time: 2021-09-25T00:41:12.421050Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2021-09-25T00:41:13.518818Z, end-time: 2021-09-25T00:41:17.780720Z, duration: 4, exit-code: 0 python3.7 -mvirtualenv Using base prefix '/home/docs/.pyenv/versions/3.7.9' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2021-09-25T00:41:17.917942Z, end-time: 2021-09-25T00:41:19.307320Z, duration: 1, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip setuptools Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/simple Requirement already satisfied: pip in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages (21.2.4) Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages (58.1.0) [rtd-command-info] start-time: 2021-09-25T00:41:19.408724Z, end-time: 2021-09-25T00:41:27.959464Z, duration: 8, exit-code: 0 python -m pip install --upgrade --no-cache-dir mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<2.2 Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/simple Collecting mock==1.0.1 Downloading mock-1.0.1.zip (861 kB) Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.5-py2.py3-none-any.whl (3.1 MB) Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) Collecting readthedocs-sphinx-ext<2.2 Downloading readthedocs_sphinx_ext-2.1.4-py2.py3-none-any.whl (29 kB) Collecting future Downloading future-0.18.2.tar.gz (829 kB) Collecting docutils>=0.11 Downloading docutils-0.17.1-py2.py3-none-any.whl (575 kB) Collecting babel!=2.0,>=1.3 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Collecting MarkupSafe>=2.0 Downloading MarkupSafe-2.0.1-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (31 kB) Collecting idna<4,>=2.5 Downloading idna-3.2-py3-none-any.whl (59 kB) Collecting urllib3<1.27,>=1.21.1 Downloading urllib3-1.26.7-py2.py3-none-any.whl (138 kB) Collecting charset-normalizer~=2.0.0 Downloading charset_normalizer-2.0.6-py3-none-any.whl (37 kB) Collecting certifi>=2017.4.17 Downloading certifi-2021.5.30-py2.py3-none-any.whl (145 kB) Collecting pyparsing>=2.0.2 Downloading pyparsing-2.4.7-py2.py3-none-any.whl (67 kB) Collecting sphinxcontrib-serializinghtml Downloading sphinxcontrib_serializinghtml-1.1.5-py2.py3-none-any.whl (94 kB) Building wheels for collected packages: mock, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23772 sha256=80c37a9e638093fd46d4ccaae7eeaea329bdc870b53c5bbd6c12d3d8e5730c5d Stored in directory: /tmp/pip-ephem-wheel-cache-9r8sgpin/wheels/7a/94/b1/0fdc5339a5bd487a5cc15421ec200d9ba3e2aa7190e4a727f1 Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491070 sha256=f24d21e1d152f673d9d640969c8832babed68a423c99f8f1861cd6388d655a9f Stored in directory: /tmp/pip-ephem-wheel-cache-9r8sgpin/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0 Successfully built mock future Installing collected packages: urllib3, sphinxcontrib-serializinghtml, pytz, pyparsing, MarkupSafe, idna, charset-normalizer, certifi, sphinxcontrib-websupport, snowballstemmer, six, requests, Pygments, packaging, Jinja2, imagesize, future, docutils, babel, alabaster, sphinx, commonmark, sphinx-rtd-theme, recommonmark, readthedocs-sphinx-ext, pillow, mock Successfully installed Jinja2-3.0.1 MarkupSafe-2.0.1 Pygments-2.10.0 alabaster-0.7.12 babel-2.9.1 certifi-2021.5.30 charset-normalizer-2.0.6 commonmark-0.8.1 docutils-0.17.1 future-0.18.2 idna-3.2 imagesize-1.2.0 mock-1.0.1 packaging-21.0 pillow-5.4.1 pyparsing-2.4.7 pytz-2021.1 readthedocs-sphinx-ext-2.1.4 recommonmark-0.5.0 requests-2.26.0 six-1.16.0 snowballstemmer-2.1.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-serializinghtml-1.1.5 sphinxcontrib-websupport-1.2.4 urllib3-1.26.7 [rtd-command-info] start-time: 2021-09-25T00:41:28.074764Z, end-time: 2021-09-25T00:41:53.333757Z, duration: 25, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r requirements.txt Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/simple Collecting emodpy~=1.14.0 Downloading https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/emodpy/1.14.0/emodpy-1.14.0-py3-none-any.whl (114 kB) Collecting emod-malaria==0.0.0 Downloading 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tabulate<0.9,>=0.8.9 Downloading tabulate-0.8.9-py3-none-any.whl (25 kB) Collecting pipreqs<0.5,>=0.4.10 Downloading pipreqs-0.4.10-py2.py3-none-any.whl (25 kB) Collecting humanfriendly>=9.1 Downloading humanfriendly-10.0-py2.py3-none-any.whl (86 kB) Collecting jinja2~=2.11.3 Downloading Jinja2-2.11.3-py2.py3-none-any.whl (125 kB) Collecting pyCOMPS~=2.4.1 Downloading https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/pyCOMPS/2.4.1/pyCOMPS-2.4.1-py2.py3-none-any.whl (55 kB) Requirement already satisfied: MarkupSafe>=0.23 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages (from jinja2~=2.11.3->idmtools-models~=1.6.0->emodpy~=1.14.0->-r requirements.txt (line 1)) (2.0.1) Requirement already satisfied: pyparsing>=2.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages (from 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sha256=7d521fe9056eb13e8f97c88710d60cf2906edc642092739c2b4909c2362d8e60 Stored in directory: /tmp/pip-ephem-wheel-cache-f4i8tv3y/wheels/0a/9e/ba/20e5bbc1afef3a491f0b3bb74d508f99403aabe76eda2167ca Building wheel for docopt (setup.py): started Building wheel for docopt (setup.py): finished with status 'done' Created wheel for docopt: filename=docopt-0.6.2-py2.py3-none-any.whl size=13724 sha256=735a03874028f7a71f01409a084001ceb3b99d448ad7028f5aeb7868dcf4044f Stored in directory: /tmp/pip-ephem-wheel-cache-f4i8tv3y/wheels/72/b0/3f/1d95f96ff986c7dfffe46ce2be4062f38ebd04b506c77c81b9 Building wheel for sklearn (setup.py): started Building wheel for sklearn (setup.py): finished with status 'done' Created wheel for sklearn: filename=sklearn-0.0-py2.py3-none-any.whl size=1309 sha256=2d5f54a3596b8769a1b5f93b90bd18b722a8f0b0a290a61b9fa15f668966dee4 Stored in directory: /tmp/pip-ephem-wheel-cache-f4i8tv3y/wheels/46/ef/c3/157e41f5ee1372d1be90b09f74f82b10e391eaacca8f22d33e Successfully built bs4 docopt sklearn Installing collected packages: zipp, typing-extensions, pycparser, numpy, yarg, threadpoolctl, scipy, python-dateutil, joblib, importlib-metadata, humanfriendly, docopt, cffi, cached-property, xdg, tqdm, tabulate, soupsieve, scikit-learn, pyyaml, pygit2, pluggy, pipreqs, pandas, packaging, more-itertools, jeepney, diskcache, cryptography, coloredlogs, backoff, sklearn, shapely, SecretStorage, pyproj, pyCOMPS, pillow, lz4, kiwisolver, jinja2, idmtools, geographiclib, cycler, beautifulsoup4, matplotlib, keyring, idmtools-platform-comps, idmtools-models, emod-api, click, bs4, astunparse, astor, emodpy, emod-malaria Attempting uninstall: packaging Found existing installation: packaging 21.0 Uninstalling packaging-21.0: Successfully uninstalled packaging-21.0 Attempting uninstall: pillow Found existing installation: Pillow 5.4.1 Uninstalling Pillow-5.4.1: Successfully uninstalled Pillow-5.4.1 Attempting uninstall: jinja2 Found existing installation: Jinja2 3.0.1 Uninstalling Jinja2-3.0.1: Successfully uninstalled Jinja2-3.0.1 Successfully installed SecretStorage-3.3.1 astor-0.8.1 astunparse-1.6.3 backoff-1.10.0 beautifulsoup4-4.10.0 bs4-0.0.1 cached-property-1.5.2 cffi-1.14.6 click-7.1.2 coloredlogs-15.0.1 cryptography-3.4.8 cycler-0.10.0 diskcache-5.1.0 docopt-0.6.2 emod-api-1.15.1 emod-malaria-0.0.0 emodpy-1.14.0 geographiclib-1.52 humanfriendly-10.0 idmtools-1.6.3 idmtools-models-1.6.3 idmtools-platform-comps-1.6.3 importlib-metadata-4.8.1 jeepney-0.7.1 jinja2-2.11.3 joblib-1.0.1 keyring-23.2.1 kiwisolver-1.3.2 lz4-3.1.3 matplotlib-3.4.3 more-itertools-8.7.0 numpy-1.21.2 packaging-20.9 pandas-1.1.5 pillow-8.3.2 pipreqs-0.4.10 pluggy-0.13.1 pyCOMPS-2.4.1 pycparser-2.20 pygit2-1.5.0 pyproj-3.2.1 python-dateutil-2.8.2 pyyaml-5.4.1 scikit-learn-1.0 scipy-1.7.1 shapely-1.7.1 sklearn-0.0 soupsieve-2.2.1 tabulate-0.8.9 threadpoolctl-2.2.0 tqdm-4.62.3 typing-extensions-3.10.0.2 xdg-5.1.1 yarg-0.1.9 zipp-3.5.0 [rtd-command-info] start-time: 2021-09-25T00:41:53.443257Z, end-time: 2021-09-25T00:42:00.154473Z, duration: 6, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r docs/requirements.txt Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/simple Collecting plantweb~=1.2.1 Downloading plantweb-1.2.1-py3-none-any.whl (20 kB) Collecting pygit2~=1.4.0 Downloading pygit2-1.4.0-cp37-cp37m-manylinux2010_x86_64.whl (3.0 MB) Collecting PyGithub~=1.54 Downloading PyGithub-1.55-py3-none-any.whl (291 kB) Collecting sphinx-copybutton~=0.3.1 Downloading sphinx_copybutton-0.3.3-py3-none-any.whl (12 kB) Collecting sphinx-rtd-theme~=0.5.0 Downloading sphinx_rtd_theme-0.5.2-py2.py3-none-any.whl (9.1 MB) Collecting sphinxcontrib-napoleon~=0.7 Downloading sphinxcontrib_napoleon-0.7-py2.py3-none-any.whl (17 kB) Collecting sphinxcontrib-programoutput~=0.16 Downloading sphinxcontrib_programoutput-0.17-py2.py3-none-any.whl (22 kB) Collecting sphinx~=3.3.1 Downloading Sphinx-3.3.1-py3-none-any.whl (2.9 MB) Collecting sphinxext.remoteliteralinclude Downloading sphinxext_remoteliteralinclude-0.3.0-py3-none-any.whl (6.3 kB) Requirement already satisfied: docutils in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages (from plantweb~=1.2.1->-r docs/requirements.txt (line 1)) (0.17.1) Requirement already satisfied: six in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages (from plantweb~=1.2.1->-r docs/requirements.txt (line 1)) (1.16.0) Requirement already satisfied: requests in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages (from plantweb~=1.2.1->-r docs/requirements.txt (line 1)) (2.26.0) Requirement already satisfied: cffi>=1.4.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages (from pygit2~=1.4.0->-r docs/requirements.txt (line 2)) (1.14.6) Requirement already satisfied: cached-property in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages (from pygit2~=1.4.0->-r docs/requirements.txt (line 2)) (1.5.2) Collecting pynacl>=1.4.0 Downloading PyNaCl-1.4.0-cp35-abi3-manylinux1_x86_64.whl (961 kB) Collecting deprecated Downloading Deprecated-1.2.13-py2.py3-none-any.whl (9.6 kB) Collecting pyjwt>=2.0 Downloading PyJWT-2.1.0-py3-none-any.whl (16 kB) Collecting docutils Downloading docutils-0.16-py2.py3-none-any.whl (548 kB) Collecting pockets>=0.3 Downloading pockets-0.9.1-py2.py3-none-any.whl (26 kB) Requirement already satisfied: babel>=1.3 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages (from sphinx~=3.3.1->-r docs/requirements.txt (line 8)) (2.9.1) Collecting sphinxcontrib-devhelp Downloading sphinxcontrib_devhelp-1.0.2-py2.py3-none-any.whl (84 kB) Requirement already satisfied: snowballstemmer>=1.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages (from sphinx~=3.3.1->-r docs/requirements.txt (line 8)) (2.1.0) Requirement already satisfied: imagesize in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages (from sphinx~=3.3.1->-r docs/requirements.txt (line 8)) (1.2.0) Requirement already satisfied: sphinxcontrib-serializinghtml in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages (from sphinx~=3.3.1->-r docs/requirements.txt (line 8)) (1.1.5) Collecting sphinxcontrib-jsmath Downloading sphinxcontrib_jsmath-1.0.1-py2.py3-none-any.whl (5.1 kB) Requirement already satisfied: packaging in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages (from sphinx~=3.3.1->-r docs/requirements.txt (line 8)) (20.9) Collecting sphinxcontrib-htmlhelp Downloading sphinxcontrib_htmlhelp-2.0.0-py2.py3-none-any.whl (100 kB) Requirement already satisfied: alabaster<0.8,>=0.7 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages (from sphinx~=3.3.1->-r docs/requirements.txt (line 8)) (0.7.12) Collecting sphinxcontrib-applehelp Downloading sphinxcontrib_applehelp-1.0.2-py2.py3-none-any.whl (121 kB) Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages (from sphinx~=3.3.1->-r docs/requirements.txt (line 8)) (58.1.0) Collecting sphinxcontrib-qthelp Downloading sphinxcontrib_qthelp-1.0.3-py2.py3-none-any.whl (90 kB) Requirement already satisfied: Pygments>=2.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages (from sphinx~=3.3.1->-r docs/requirements.txt (line 8)) (2.10.0) Requirement already satisfied: Jinja2>=2.3 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages (from sphinx~=3.3.1->-r docs/requirements.txt (line 8)) (2.11.3) Requirement already satisfied: pytz>=2015.7 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages (from babel>=1.3->sphinx~=3.3.1->-r docs/requirements.txt (line 8)) (2021.1) Requirement already satisfied: pycparser in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages (from cffi>=1.4.0->pygit2~=1.4.0->-r docs/requirements.txt (line 2)) (2.20) Requirement already satisfied: MarkupSafe>=0.23 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages (from Jinja2>=2.3->sphinx~=3.3.1->-r docs/requirements.txt (line 8)) (2.0.1) Requirement already satisfied: charset-normalizer~=2.0.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages (from requests->plantweb~=1.2.1->-r docs/requirements.txt (line 1)) (2.0.6) Requirement already satisfied: certifi>=2017.4.17 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages (from requests->plantweb~=1.2.1->-r docs/requirements.txt (line 1)) (2021.5.30) Requirement already satisfied: idna<4,>=2.5 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages (from requests->plantweb~=1.2.1->-r docs/requirements.txt (line 1)) (3.2) Requirement already satisfied: urllib3<1.27,>=1.21.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages (from requests->plantweb~=1.2.1->-r docs/requirements.txt (line 1)) (1.26.7) Collecting wrapt<2,>=1.10 Downloading wrapt-1.12.1.tar.gz (27 kB) Requirement already satisfied: pyparsing>=2.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages (from packaging->sphinx~=3.3.1->-r docs/requirements.txt (line 8)) (2.4.7) Building wheels for collected packages: wrapt Building wheel for wrapt (setup.py): started Building wheel for wrapt (setup.py): finished with status 'done' Created wheel for wrapt: filename=wrapt-1.12.1-cp37-cp37m-linux_x86_64.whl size=71044 sha256=24ccb4f2edc051d18792a2afb8fa6ea1114210dbc570fc587742530f07f76226 Stored in directory: /tmp/pip-ephem-wheel-cache-co9r3m50/wheels/62/76/4c/aa25851149f3f6d9785f6c869387ad82b3fd37582fa8147ac6 Successfully built wrapt Installing collected packages: wrapt, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, docutils, sphinx, pynacl, pyjwt, pockets, deprecated, sphinxext.remoteliteralinclude, sphinxcontrib-programoutput, sphinxcontrib-napoleon, sphinx-rtd-theme, sphinx-copybutton, PyGithub, pygit2, plantweb Attempting uninstall: docutils Found existing installation: docutils 0.17.1 Uninstalling docutils-0.17.1: Successfully uninstalled docutils-0.17.1 Attempting uninstall: sphinx Found existing installation: Sphinx 1.8.5 Uninstalling Sphinx-1.8.5: Successfully uninstalled Sphinx-1.8.5 Attempting uninstall: sphinx-rtd-theme Found existing installation: sphinx-rtd-theme 0.4.3 Uninstalling sphinx-rtd-theme-0.4.3: Successfully uninstalled sphinx-rtd-theme-0.4.3 Attempting uninstall: pygit2 Found existing installation: pygit2 1.5.0 Uninstalling pygit2-1.5.0: Successfully uninstalled pygit2-1.5.0 Successfully installed PyGithub-1.55 deprecated-1.2.13 docutils-0.16 plantweb-1.2.1 pockets-0.9.1 pygit2-1.4.0 pyjwt-2.1.0 pynacl-1.4.0 sphinx-3.3.1 sphinx-copybutton-0.3.3 sphinx-rtd-theme-0.5.2 sphinxcontrib-applehelp-1.0.2 sphinxcontrib-devhelp-1.0.2 sphinxcontrib-htmlhelp-2.0.0 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-napoleon-0.7 sphinxcontrib-programoutput-0.17 sphinxcontrib-qthelp-1.0.3 sphinxext.remoteliteralinclude-0.3.0 wrapt-1.12.1 [rtd-command-info] start-time: 2021-09-25T00:42:00.285839Z, end-time: 2021-09-25T00:42:01.340882Z, duration: 1, exit-code: 0 python ./setup.py install --force running install running bdist_egg running egg_info creating emodpy_malaria.egg-info writing emodpy_malaria.egg-info/PKG-INFO writing dependency_links to emodpy_malaria.egg-info/dependency_links.txt writing requirements to emodpy_malaria.egg-info/requires.txt writing top-level names to emodpy_malaria.egg-info/top_level.txt writing manifest file 'emodpy_malaria.egg-info/SOURCES.txt' reading manifest file 'emodpy_malaria.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'emodpy_malaria.egg-info/SOURCES.txt' installing library code to build/bdist.linux-x86_64/egg running install_lib running build_py creating build creating build/lib creating build/lib/emodpy_malaria copying emodpy_malaria/vector_config.py -> build/lib/emodpy_malaria copying emodpy_malaria/__init__.py -> build/lib/emodpy_malaria copying emodpy_malaria/malaria_config.py -> build/lib/emodpy_malaria creating build/lib/tests copying tests/__init__.py -> build/lib/tests creating build/lib/emodpy_malaria/demographics copying emodpy_malaria/demographics/MalariaDemographics.py -> build/lib/emodpy_malaria/demographics copying emodpy_malaria/demographics/__init__.py -> build/lib/emodpy_malaria/demographics creating build/lib/emodpy_malaria/reporters copying emodpy_malaria/reporters/builtin.py -> build/lib/emodpy_malaria/reporters copying emodpy_malaria/reporters/__init__.py -> build/lib/emodpy_malaria/reporters creating build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/diag_survey.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/outbreak.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/irs.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/mosquitorelease.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/drug.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/spacespraying.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/inputeir.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/common.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/udbednet.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/sugartrap.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/outdoorrestkill.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/bednet.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/treatment_seeking.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/ivermectin.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/drug_campaign.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/__init__.py -> build/lib/emodpy_malaria/interventions creating build/lib/tests/unittests copying tests/unittests/get_latest_schema.py -> build/lib/tests/unittests copying tests/unittests/test_malaria_reporters.py -> build/lib/tests/unittests copying tests/unittests/test_malaria_config.py -> build/lib/tests/unittests copying tests/unittests/get_unittest_coverage.py -> build/lib/tests/unittests copying tests/unittests/schema_path_file.py -> build/lib/tests/unittests copying tests/unittests/test_treatment_seeking.py -> build/lib/tests/unittests copying tests/unittests/test_malaria_interventions_as_files.py -> build/lib/tests/unittests copying tests/unittests/test_import.py -> build/lib/tests/unittests copying tests/unittests/test_malaria_interventions.py -> build/lib/tests/unittests copying tests/unittests/__init__.py -> build/lib/tests/unittests copying emodpy_malaria/malaria_drug_params.csv -> build/lib/emodpy_malaria copying emodpy_malaria/malaria_vector_species_params.csv -> build/lib/emodpy_malaria creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/egg creating build/bdist.linux-x86_64/egg/emodpy_malaria copying build/lib/emodpy_malaria/malaria_vector_species_params.csv -> build/bdist.linux-x86_64/egg/emodpy_malaria creating build/bdist.linux-x86_64/egg/emodpy_malaria/demographics copying build/lib/emodpy_malaria/demographics/MalariaDemographics.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/demographics copying build/lib/emodpy_malaria/demographics/__init__.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/demographics creating build/bdist.linux-x86_64/egg/emodpy_malaria/reporters copying build/lib/emodpy_malaria/reporters/builtin.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/reporters copying build/lib/emodpy_malaria/reporters/__init__.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/reporters copying build/lib/emodpy_malaria/vector_config.py -> build/bdist.linux-x86_64/egg/emodpy_malaria copying build/lib/emodpy_malaria/malaria_drug_params.csv -> build/bdist.linux-x86_64/egg/emodpy_malaria creating build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/diag_survey.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/outbreak.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/irs.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/mosquitorelease.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/drug.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/spacespraying.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/inputeir.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/common.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/udbednet.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/sugartrap.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/outdoorrestkill.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/bednet.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/treatment_seeking.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/ivermectin.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/drug_campaign.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/__init__.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/__init__.py -> build/bdist.linux-x86_64/egg/emodpy_malaria copying build/lib/emodpy_malaria/malaria_config.py -> build/bdist.linux-x86_64/egg/emodpy_malaria creating build/bdist.linux-x86_64/egg/tests creating build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/get_latest_schema.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_malaria_reporters.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_malaria_config.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/get_unittest_coverage.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/schema_path_file.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_treatment_seeking.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_malaria_interventions_as_files.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_import.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_malaria_interventions.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/__init__.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/__init__.py -> build/bdist.linux-x86_64/egg/tests byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/demographics/MalariaDemographics.py to MalariaDemographics.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/demographics/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/reporters/builtin.py to builtin.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/reporters/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/vector_config.py to vector_config.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/diag_survey.py to diag_survey.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/outbreak.py to outbreak.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/irs.py to irs.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/mosquitorelease.py to mosquitorelease.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/drug.py to drug.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/spacespraying.py to spacespraying.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/inputeir.py to inputeir.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/common.py to common.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/udbednet.py to udbednet.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/sugartrap.py to sugartrap.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/outdoorrestkill.py to outdoorrestkill.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/bednet.py to bednet.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/treatment_seeking.py to treatment_seeking.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/ivermectin.py to ivermectin.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/drug_campaign.py to drug_campaign.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/malaria_config.py to malaria_config.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/get_latest_schema.py to get_latest_schema.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_malaria_reporters.py to test_malaria_reporters.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_malaria_config.py to test_malaria_config.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/get_unittest_coverage.py to get_unittest_coverage.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/schema_path_file.py to schema_path_file.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_treatment_seeking.py to test_treatment_seeking.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_malaria_interventions_as_files.py to test_malaria_interventions_as_files.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_import.py to test_import.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_malaria_interventions.py to test_malaria_interventions.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/__init__.py to __init__.cpython-37.pyc creating build/bdist.linux-x86_64/egg/EGG-INFO copying emodpy_malaria.egg-info/PKG-INFO -> build/bdist.linux-x86_64/egg/EGG-INFO copying emodpy_malaria.egg-info/SOURCES.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying emodpy_malaria.egg-info/dependency_links.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying emodpy_malaria.egg-info/requires.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying emodpy_malaria.egg-info/top_level.txt -> build/bdist.linux-x86_64/egg/EGG-INFO zip_safe flag not set; analyzing archive contents... emodpy_malaria.__pycache__.malaria_config.cpython-37: module references __file__ emodpy_malaria.__pycache__.vector_config.cpython-37: module references __file__ tests.unittests.__pycache__.schema_path_file.cpython-37: module references __file__ tests.unittests.__pycache__.test_malaria_config.cpython-37: module references __file__ tests.unittests.__pycache__.test_malaria_interventions.cpython-37: module references __file__ tests.unittests.__pycache__.test_malaria_reporters.cpython-37: module references __file__ tests.unittests.__pycache__.test_treatment_seeking.cpython-37: module references __file__ creating dist creating 'dist/emodpy_malaria-0.0.90-py3.7.egg' and adding 'build/bdist.linux-x86_64/egg' to it removing 'build/bdist.linux-x86_64/egg' (and everything under it) Processing emodpy_malaria-0.0.90-py3.7.egg creating /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages/emodpy_malaria-0.0.90-py3.7.egg Extracting emodpy_malaria-0.0.90-py3.7.egg to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Adding emodpy-malaria 0.0.90 to easy-install.pth file Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages/emodpy_malaria-0.0.90-py3.7.egg Processing dependencies for emodpy-malaria==0.0.90 Searching for emod-malaria==0.0.0 Best match: emod-malaria 0.0.0 Adding emod-malaria 0.0.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for emodpy==1.14.0 Best match: emodpy 1.14.0 Adding emodpy 1.14.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for astunparse==1.6.3 Best match: astunparse 1.6.3 Adding astunparse 1.6.3 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for astor==0.8.1 Best match: astor 0.8.1 Adding astor 0.8.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for idmtools-models==1.6.3 Best match: idmtools-models 1.6.3 Adding idmtools-models 1.6.3 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for click==7.1.2 Best match: click 7.1.2 Adding click 7.1.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for idmtools-platform-comps==1.6.3 Best match: idmtools-platform-comps 1.6.3 Adding idmtools-platform-comps 1.6.3 to easy-install.pth file Installing comps-cli script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for keyring==23.2.1 Best match: keyring 23.2.1 Adding keyring 23.2.1 to easy-install.pth file Installing keyring script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for matplotlib==3.4.3 Best match: matplotlib 3.4.3 Adding matplotlib 3.4.3 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for bs4==0.0.1 Best match: bs4 0.0.1 Adding bs4 0.0.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for idmtools==1.6.3 Best match: idmtools 1.6.3 Adding idmtools 1.6.3 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for emod-api==1.15.1 Best match: emod-api 1.15.1 Adding emod-api 1.15.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for six==1.16.0 Best match: six 1.16.0 Adding six 1.16.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for wheel==0.37.0 Best match: wheel 0.37.0 Adding wheel 0.37.0 to easy-install.pth file Installing wheel script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for Jinja2==2.11.3 Best match: Jinja2 2.11.3 Adding Jinja2 2.11.3 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for pyCOMPS==2.4.1 Best match: pyCOMPS 2.4.1 Adding pyCOMPS 2.4.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for tqdm==4.62.3 Best match: tqdm 4.62.3 Adding tqdm 4.62.3 to easy-install.pth file Installing tqdm script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for SecretStorage==3.3.1 Best match: SecretStorage 3.3.1 Adding SecretStorage 3.3.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for importlib-metadata==4.8.1 Best match: importlib-metadata 4.8.1 Adding importlib-metadata 4.8.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for jeepney==0.7.1 Best match: jeepney 0.7.1 Adding jeepney 0.7.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for python-dateutil==2.8.2 Best match: python-dateutil 2.8.2 Adding python-dateutil 2.8.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for kiwisolver==1.3.2 Best match: kiwisolver 1.3.2 Adding kiwisolver 1.3.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for numpy==1.21.2 Best match: numpy 1.21.2 Adding numpy 1.21.2 to easy-install.pth file Installing f2py script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Installing f2py3 script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Installing f2py3.7 script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for pyparsing==2.4.7 Best match: pyparsing 2.4.7 Adding pyparsing 2.4.7 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for cycler==0.10.0 Best match: cycler 0.10.0 Adding cycler 0.10.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for Pillow==8.3.2 Best match: Pillow 8.3.2 Adding Pillow 8.3.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for beautifulsoup4==4.10.0 Best match: beautifulsoup4 4.10.0 Adding beautifulsoup4 4.10.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for pygit2==1.4.0 Best match: pygit2 1.4.0 Adding pygit2 1.4.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for tabulate==0.8.9 Best match: tabulate 0.8.9 Adding tabulate 0.8.9 to easy-install.pth file Installing tabulate script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for PyYAML==5.4.1 Best match: PyYAML 5.4.1 Adding PyYAML 5.4.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for backoff==1.10.0 Best match: backoff 1.10.0 Adding backoff 1.10.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for coloredlogs==15.0.1 Best match: coloredlogs 15.0.1 Adding coloredlogs 15.0.1 to easy-install.pth file Installing coloredlogs script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for pluggy==0.13.1 Best match: pluggy 0.13.1 Adding pluggy 0.13.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for diskcache==5.1.0 Best match: diskcache 5.1.0 Adding diskcache 5.1.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for pandas==1.1.5 Best match: pandas 1.1.5 Adding pandas 1.1.5 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for packaging==20.9 Best match: packaging 20.9 Adding packaging 20.9 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for more-itertools==8.7.0 Best match: more-itertools 8.7.0 Adding more-itertools 8.7.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for pipreqs==0.4.10 Best match: pipreqs 0.4.10 Adding pipreqs 0.4.10 to easy-install.pth file Installing pipreqs script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for lz4==3.1.3 Best match: lz4 3.1.3 Adding lz4 3.1.3 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for Shapely==1.7.1 Best match: Shapely 1.7.1 Adding Shapely 1.7.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for geographiclib==1.52 Best match: geographiclib 1.52 Adding geographiclib 1.52 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for pyproj==3.2.1 Best match: pyproj 3.2.1 Adding pyproj 3.2.1 to easy-install.pth file Installing pyproj script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for scipy==1.7.1 Best match: scipy 1.7.1 Adding scipy 1.7.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for sklearn==0.0 Best match: sklearn 0.0 Adding sklearn 0.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for MarkupSafe==2.0.1 Best match: MarkupSafe 2.0.1 Adding MarkupSafe 2.0.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for xdg==5.1.1 Best match: xdg 5.1.1 Adding xdg 5.1.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for pytz==2021.1 Best match: pytz 2021.1 Adding pytz 2021.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for future==0.18.2 Best match: future 0.18.2 Adding future 0.18.2 to easy-install.pth file Installing futurize script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Installing pasteurize script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for requests==2.26.0 Best match: requests 2.26.0 Adding requests 2.26.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for cryptography==3.4.8 Best match: cryptography 3.4.8 Adding cryptography 3.4.8 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for typing-extensions==3.10.0.2 Best match: typing-extensions 3.10.0.2 Adding typing-extensions 3.10.0.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for zipp==3.5.0 Best match: zipp 3.5.0 Adding zipp 3.5.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for soupsieve==2.2.1 Best match: soupsieve 2.2.1 Adding soupsieve 2.2.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for cached-property==1.5.2 Best match: cached-property 1.5.2 Adding cached-property 1.5.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for cffi==1.14.6 Best match: cffi 1.14.6 Adding cffi 1.14.6 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for humanfriendly==10.0 Best match: humanfriendly 10.0 Adding humanfriendly 10.0 to easy-install.pth file Installing humanfriendly script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for yarg==0.1.9 Best match: yarg 0.1.9 Adding yarg 0.1.9 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for docopt==0.6.2 Best match: docopt 0.6.2 Adding docopt 0.6.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for certifi==2021.5.30 Best match: certifi 2021.5.30 Adding certifi 2021.5.30 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for scikit-learn==1.0 Best match: scikit-learn 1.0 Adding scikit-learn 1.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for idna==3.2 Best match: idna 3.2 Adding idna 3.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for charset-normalizer==2.0.6 Best match: charset-normalizer 2.0.6 Adding charset-normalizer 2.0.6 to easy-install.pth file Installing normalizer script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for urllib3==1.26.7 Best match: urllib3 1.26.7 Adding urllib3 1.26.7 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for pycparser==2.20 Best match: pycparser 2.20 Adding pycparser 2.20 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for joblib==1.0.1 Best match: joblib 1.0.1 Adding joblib 1.0.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for threadpoolctl==2.2.0 Best match: threadpoolctl 2.2.0 Adding threadpoolctl 2.2.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Finished processing dependencies for emodpy-malaria==0.0.90 [rtd-command-info] start-time: 2021-09-25T00:42:02.610644Z, end-time: 2021-09-25T00:42:02.677901Z, duration: 0, exit-code: 0 cat docs/conf.py # -*- coding: utf-8 -*- # # Sphinx Demo docs build configuration file, created by # sphinx-quickstart on Fri Aug 26 16:52:16 2016. # # This file is execfile()d with the current directory set to its # containing dir. # # Note that not all possible configuration values are present in this # autogenerated file. # # All configuration values have a default; values that are commented out # serve to show the default. # If extensions (or modules to document with autodoc) are in another directory, # add these directories to sys.path here. If the directory is relative to the # docs root, use os.path.abspath to make it absolute, like shown here. # import os import subprocess import sys import sphinx_rtd_theme import configparser from datetime import datetime from urllib.request import urlretrieve if sys.platform in ["linux", "darwin"]: subprocess.check_output(["make", "generate-api"], cwd=os.path.dirname(os.path.abspath(__file__))) else: subprocess.check_output(["make.bat", "generate-api"], cwd=os.path.dirname(os.path.abspath(__file__))) # -- General configuration ------------------------------------------------ tags.add('emodpymalaria') # If your docs needs a minimal Sphinx version, state it here. # # needs_sphinx = '1.0' # Add any Sphinx extension module names here, as strings. They can be # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom # ones. extensions = [ 'sphinx.ext.mathjax', 'sphinx.ext.githubpages', 'sphinx.ext.autodoc', 'sphinxcontrib.napoleon', 'sphinx.ext.todo', 'plantweb.directive', 'sphinxcontrib.programoutput', 'sphinx_copybutton', 'sphinx.ext.intersphinx', 'sphinxext.remoteliteralinclude' ] plantuml = 'plantweb' autodoc_default_options = { 'member-order': 'bysource', 'members': None, 'exclude-members': '__all__' } autodoc_mock_imports = [] napoleon_google_docstring = True # napoleon_numpy_docstring = True # Add any paths that contain templates here, relative to this directory. templates_path = ['_templates'] # The suffix(es) of source filenames. # You can specify multiple suffix as a list of string: # # source_suffix = ['.rst', '.md'] source_suffix = '.rst' # The encoding of source files. # # source_encoding = 'utf-8-sig' # The master toctree document. master_doc = 'index' # General information about the project. project = u'emodpy-malaria' copyright = f'1999 - {datetime.today().year}, Bill & Melinda Gates Foundation. All rights reserved.' author = u'Institute for Disease Modeling' # The version info for the project you're documenting, acts as replacement for # |version| and |release|, also used in various other places throughout the # built documents. # # The short X.Y version. #current_path = os.path.dirname(__file__) #version_path = os.path.join(current_path, '..', '.bumpversion.cfg') #config = configparser.ConfigParser() #config.read(version_path) #version = config['bumpversion']['current_version'] # The full version, including alpha/beta/rc tags. # release = u'1.0' # The language for content autogenerated by Sphinx. Refer to docs # for a list of supported languages. # # This is also used if you do content translation via gettext catalogs. # Usually you set "language" from the command line for these cases. language = None # There are two options for replacing |today|: either, you set today to some # non-false value, then it is used: # # today = '' # # Else, today_fmt is used as the format for a strftime call. # # today_fmt = '%B %d, %Y' # List of patterns, relative to source directory, that match files and # directories to ignore when looking for source files. # This patterns also effect to html_static_path and html_extra_path exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store'] # The reST default role (used for this markup: `text`) to use for all # documents. # # default_role = None # If true, '()' will be appended to :func: etc. cross-reference text. # # add_function_parentheses = True # If true, the current module name will be prepended to all description # unit titles (such as .. function::). # # add_module_names = True # If true, sectionauthor and moduleauthor directives will be shown in the # output. They are ignored by default. # # show_authors = False # The name of the Pygments (syntax highlighting) style to use. pygments_style = 'sphinx' # A list of ignored prefixes for module index sorting. # modindex_common_prefix = [] # If true, keep warnings as "system message" paragraphs in the built documents. # keep_warnings = False # If true, `todo` and `todoList` produce output, else they produce nothing. todo_include_todos = False # RST epilog is added to the end of every topic. Useful for replace # directives to use across the docset. rst_epilog = "\n.. include:: /variables.txt" # -- Options for HTML output ---------------------------------------------- # The theme to use for HTML and HTML Help pages. See the docs for # a list of builtin themes. # html_theme = 'sphinx_rtd_theme' # Theme options are theme-specific and customize the look and feel of a theme # further. For a list of options available for each theme, see the # docs. # # # html_theme_options = { # } # Add any paths that contain custom themes here, relative to this directory. html_theme_path = [sphinx_rtd_theme.get_html_theme_path()] # The name for this set of Sphinx documents. # " v docs" by default. # # html_title = u'Sphinx Demo v1.0' # A shorter title for the navigation bar. Default is the same as html_title. # # html_short_title = None # The name of an image file (relative to this directory) to place at the top # of the sidebar. # html_logo = "images/IDM_white.png" # The name of an image file (relative to this directory) to use as a favicon of # the docs. This file should be a Windows icon file (.ico) being 16x16 or 32x32 # pixels large. # html_favicon = "images/favicon.ico" # Add any paths that contain custom static files (such as style sheets) here, # relative to this directory. They are copied after the builtin static files, # so a file named "default.css" will overwrite the builtin "default.css". html_static_path = ['_static'] html_context = { 'css_files': [ '_static/theme_overrides.css', '_static/copy_button.css' ] } html_js_files = ['show_block_by_os.js'] # Add any extra paths that contain custom files (such as robots.txt or # .htaccess) here, relative to this directory. These files are copied # directly to the root of the docs. # # html_extra_path = [] # If not None, a 'Last updated on:' timestamp is inserted at every page # bottom, using the given strftime format. # The empty string is equivalent to '%b %d, %Y'. # # html_last_updated_fmt = None # If true, SmartyPants will be used to convert quotes and dashes to # typographically correct entities. # # html_use_smartypants = True # Custom sidebar templates, maps document names to template names. # # html_sidebars = {} # Additional templates that should be rendered to pages, maps page names to # template names. # # html_additional_pages = {} # If false, no module index is generated. # # html_domain_indices = True # If false, no index is generated. # # html_use_index = True # If true, the index is split into individual pages for each letter. # # html_split_index = False # If true, links to the reST sources are added to the pages. # html_show_sourcelink = False # If true, "Created using Sphinx" is shown in the HTML footer. Default is True. # html_show_sphinx = False # If true, "(C) Copyright ..." is shown in the HTML footer. Default is True. # # html_show_copyright = True # If true, an OpenSearch description file will be output, and all pages will # contain a tag referring to it. The value of this option must be the # base URL from which the finished HTML is served. # html_use_opensearch = 'www.idmod.org/docs/' # This is the file name suffix for HTML files (e.g. ".xhtml"). # html_file_suffix = None # Language to be used for generating the HTML full-text search index. # Sphinx supports the following languages: # 'da', 'de', 'en', 'es', 'fi', 'fr', 'hu', 'it', 'ja' # 'nl', 'no', 'pt', 'ro', 'ru', 'sv', 'tr', 'zh' # # html_search_language = 'en' # A dictionary with options for the search language support, empty by default. # 'ja' uses this config value. # 'zh' user can custom change `jieba` dictionary path. # # html_search_options = {'type': 'default'} # The name of a javascript file (relative to the configuration directory) that # implements a search results scorer. If empty, the default will be used. # # html_search_scorer = 'scorer.js' # Output file base name for HTML help builder. htmlhelp_basename = 'emodpy-malaria' # -- Options for LaTeX output --------------------------------------------- latex_elements = { # The paper size ('letterpaper' or 'a4paper'). # # 'papersize': 'letterpaper', # The font size ('10pt', '11pt' or '12pt'). # # 'pointsize': '10pt', # Additional stuff for the LaTeX preamble. # # 'preamble': '', # Latex figure (float) alignment # # 'figure_align': 'htbp', } # Grouping the document tree into LaTeX files. List of tuples # (source start file, target name, title, # author, documentclass [howto, manual, or own class]). latex_documents = [ (master_doc, 'emodpy-malaria-docs.tex', u'emodpy-malaria', u'Institute for Disease Modeling', 'manual'), ] # The name of an image file (relative to this directory) to place at the top of # the title page. # # latex_logo = None # For "manual" documents, if this is true, then toplevel headings are parts, # not chapters. # # latex_use_parts = False # If true, show page references after internal links. # # latex_show_pagerefs = False # If true, show URL addresses after external links. # # latex_show_urls = False # Documents to append as an appendix to all manuals. # # latex_appendices = [] # It false, will not define \strong, \code, itleref, \crossref ... but only # \sphinxstrong, ..., \sphinxtitleref, ... To help avoid clash with user added # packages. # # latex_keep_old_macro_names = True # If false, no module index is generated. # # latex_domain_indices = True # -- Options for manual page output --------------------------------------- # One entry per manual page. List of tuples # (source start file, name, description, authors, manual section). man_pages = [ (master_doc, 'emodpy-malaria-docs', u'emodpy-malaria', [author], 1) ] # If true, show URL addresses after external links. # man_show_urls = True # -- Options for Texinfo output ------------------------------------------- # Grouping the document tree into Texinfo files. List of tuples # (source start file, target name, title, author, # dir menu entry, description, category) texinfo_documents = [ (master_doc, 'emodpy-malaria-docs', u'emodpy-malaria', author, 'Institute for Disease Modeling', 'How to use emodpy for malaria simulations.', 'Miscellaneous'), ] # Documents to append as an appendix to all manuals. # # texinfo_appendices = [] # If false, no module index is generated. # # texinfo_domain_indices = True # How to display URL addresses: 'footnote', 'no', or 'inline'. # # texinfo_show_urls = 'footnote' # If true, do not generate a @detailmenu in the "Top" node's menu. # # texinfo_no_detailmenu = False # Example configuration for intersphinx: refer to the Python standard library. intersphinx_mapping = {'python': ('https://docs.python.org/3', None), 'emod_api': ('https://docs.idmod.org/projects/emod-api/en/latest/', None), 'emodpy': ('https://docs.idmod.org/projects/emodpy/en/latest/', None), 'idmtools': ('https://docs.idmod.org/projects/idmtools/en/latest/', None), 'emod-malaria': ('https://docs.idmod.org/projects/emod-malaria/en/latest/', None), 'pycomps': ('https://docs.idmod.org/projects/pycomps/en/latest/', None) } ########################################################################### # auto-created readthedocs.org specific configuration # ########################################################################### # # The following code was added during an automated build on readthedocs.org # It is auto created and injected for every build. The result is based on the # conf.py.tmpl file found in the readthedocs.org codebase: # https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl # # Note: this file shouldn't rely on extra dependencies. import importlib import sys import os.path # Borrowed from six. PY3 = sys.version_info[0] == 3 string_types = str if PY3 else basestring from sphinx import version_info # Get suffix for proper linking to GitHub # This is deprecated in Sphinx 1.3+, # as each page can have its own suffix if globals().get('source_suffix', False): if isinstance(source_suffix, string_types): SUFFIX = source_suffix elif isinstance(source_suffix, (list, tuple)): # Sphinx >= 1.3 supports list/tuple to define multiple suffixes SUFFIX = source_suffix[0] elif isinstance(source_suffix, dict): # Sphinx >= 1.8 supports a mapping dictionary for multiple suffixes SUFFIX = list(source_suffix.keys())[0] # make a ``list()`` for py2/py3 compatibility else: # default to .rst SUFFIX = '.rst' else: SUFFIX = '.rst' # Add RTD Static Path. Add to the end because it overwrites previous files. if not 'html_static_path' in globals(): html_static_path = [] if os.path.exists('_static'): html_static_path.append('_static') # Add RTD Theme only if they aren't overriding it already using_rtd_theme = ( ( 'html_theme' in globals() and html_theme in ['default'] and # Allow people to bail with a hack of having an html_style 'html_style' not in globals() ) or 'html_theme' not in globals() ) if using_rtd_theme: theme = importlib.import_module('sphinx_rtd_theme') html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} if 'html_theme_path' in globals(): html_theme_path.append(theme.get_html_theme_path()) else: html_theme_path = [theme.get_html_theme_path()] if globals().get('websupport2_base_url', False): websupport2_base_url = 'https://readthedocs.com/websupport' websupport2_static_url = 'https://assets.readthedocs.com/' #Add project information to the template context. context = { 'using_theme': using_rtd_theme, 'html_theme': html_theme, 'current_version': "latest", 'version_slug': "latest", 'MEDIA_URL': "https://media.readthedocs.com/media/", 'STATIC_URL': "https://assets.readthedocs.com/", 'PRODUCTION_DOMAIN': "readthedocs.com", 'versions': [ ("latest", "/en/latest/"), ("stable", "/en/stable/"), ("v0.0.61", "/en/v0.0.61/"), ("v0.0.50", "/en/v0.0.50/"), ("0.0.50", "/en/0.0.50/"), ("v0.0.48", "/en/v0.0.48/"), ("v0.0.45", "/en/v0.0.45/"), ("v0.0.44", "/en/v0.0.44/"), ("v0.0.29", "/en/v0.0.29/"), ("v0.0.18", "/en/v0.0.18/"), ], 'downloads': [ ("pdf", "//docs.idmod.org/_/downloads/emodpy-malaria/en/latest/pdf/"), ("html", "//docs.idmod.org/_/downloads/emodpy-malaria/en/latest/htmlzip/"), ], 'subprojects': [ ], 'slug': 'institute-for-disease-modeling-emodpy-malaria', 'name': u'emodpy-malaria', 'rtd_language': u'en', 'programming_language': u'words', 'canonical_url': 'https://docs.idmod.org/projects/emodpy-malaria/en/latest/', 'analytics_code': 'UA-87656833-3', 'single_version': False, 'conf_py_path': '/docs/', 'api_host': 'https://readthedocs.com', 'github_user': 'InstituteforDiseaseModeling', 'proxied_api_host': '/_', 'github_repo': 'emodpy-malaria', 'github_version': 'main', 'display_github': True, 'bitbucket_user': 'None', 'bitbucket_repo': 'None', 'bitbucket_version': 'main', 'display_bitbucket': False, 'gitlab_user': 'None', 'gitlab_repo': 'None', 'gitlab_version': 'main', 'display_gitlab': False, 'READTHEDOCS': True, 'using_theme': (html_theme == "default"), 'new_theme': (html_theme == "sphinx_rtd_theme"), 'source_suffix': SUFFIX, 'ad_free': False, 'docsearch_disabled': False, 'user_analytics_code': 'UA-87656833-3', 'global_analytics_code': 'UA-17997319-2', 'commit': 'b50aef4f', } # For sphinx >=1.8 we can use html_baseurl to set the canonical URL. # https://www.sphinx-doc.org/en/master/usage/configuration.html#confval-html_baseurl if version_info >= (1, 8): if not globals().get('html_baseurl'): html_baseurl = context['canonical_url'] context['canonical_url'] = None if 'html_context' in globals(): html_context.update(context) else: html_context = context # Add custom RTD extension if 'extensions' in globals(): # Insert at the beginning because it can interfere # with other extensions. # See https://github.com/rtfd/readthedocs.org/pull/4054 extensions.insert(0, "readthedocs_ext.readthedocs") else: extensions = ["readthedocs_ext.readthedocs"] # Add External version warning banner to the external version documentation if 'branch' == 'external': extensions.insert(1, "readthedocs_ext.external_version_warning") readthedocs_vcs_url = 'None' readthedocs_build_url = 'https://readthedocs.com/projects/institute-for-disease-modeling-emodpy-malaria/builds/730362/' project_language = 'en' # User's Sphinx configurations language_user = globals().get('language', None) latex_engine_user = globals().get('latex_engine', None) latex_elements_user = globals().get('latex_elements', None) # Remove this once xindy gets installed in Docker image and XINDYOPS # env variable is supported # https://github.com/rtfd/readthedocs-docker-images/pull/98 latex_use_xindy = False chinese = any([ language_user in ('zh_CN', 'zh_TW'), project_language in ('zh_CN', 'zh_TW'), ]) japanese = any([ language_user == 'ja', project_language == 'ja', ]) if chinese: latex_engine = latex_engine_user or 'xelatex' latex_elements_rtd = { 'preamble': '\\usepackage[UTF8]{ctex}\n', } latex_elements = latex_elements_user or latex_elements_rtd elif japanese: latex_engine = latex_engine_user or 'platex' # Make sure our build directory is always excluded exclude_patterns = globals().get('exclude_patterns', []) exclude_patterns.extend(['_build']) [rtd-command-info] start-time: 2021-09-25T00:42:02.789932Z, end-time: 2021-09-25T00:42:08.761348Z, duration: 5, exit-code: 0 python -m sphinx -T -E -W --keep-going -b html -d _build/doctrees -D language=en . _build/html Running Sphinx v3.3.1 rm: cannot remove 'modules.rst': No such file or directory make: [generate-api] Error 1 (ignored) rm: cannot remove 'emodpy_malaria_index.rst': No such file or directory make: [generate-api] Error 1 (ignored) loading translations [en]... done making output directory... done loading intersphinx inventory from https://docs.python.org/3/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emod-api/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emodpy/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/idmtools/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emod-malaria/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/pycomps/en/latest/objects.inv... building [mo]: targets for 0 po files that are out of date building [html]: targets for 28 source files that are out of date updating environment: [new config] 28 added, 0 changed, 0 removed reading sources... [ 3%] emodpy_malaria reading sources... [ 7%] emodpy_malaria.demographics reading sources... [ 10%] emodpy_malaria.demographics.MalariaDemographics reading sources... [ 14%] emodpy_malaria.interventions reading sources... [ 17%] emodpy_malaria.interventions.bednet reading sources... [ 21%] emodpy_malaria.interventions.common reading sources... [ 25%] emodpy_malaria.interventions.diag_survey reading sources... [ 28%] emodpy_malaria.interventions.drug reading sources... [ 32%] emodpy_malaria.interventions.drug_campaign reading sources... [ 35%] emodpy_malaria.interventions.inputeir reading sources... [ 39%] emodpy_malaria.interventions.irs reading sources... [ 42%] emodpy_malaria.interventions.ivermectin reading sources... [ 46%] emodpy_malaria.interventions.mosquitorelease reading sources... [ 50%] emodpy_malaria.interventions.outbreak reading sources... [ 53%] emodpy_malaria.interventions.outdoorrestkill reading sources... [ 57%] emodpy_malaria.interventions.spacespraying reading sources... [ 60%] emodpy_malaria.interventions.sugartrap reading sources... [ 64%] emodpy_malaria.interventions.treatment_seeking reading sources... [ 67%] emodpy_malaria.interventions.udbednet reading sources... [ 71%] emodpy_malaria.malaria_config reading sources... [ 75%] emodpy_malaria.reporters reading sources... [ 78%] emodpy_malaria.reporters.builtin /!\ WARNING: File 'idmtools.ini' Not Found! For details on how to configure idmtools, see https://docs.idmod.org/projects/idmtools/en/v1.6.3/configuration.html for details on how to configure idmtools. reading sources... [ 82%] emodpy_malaria.vector_config reading sources... [ 85%] emodpy_malaria_index reading sources... [ 89%] faq reading sources... [ 92%] index reading sources... [ 96%] installation reading sources... [100%] installation-basic looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 3%] emodpy_malaria writing output... [ 7%] emodpy_malaria.demographics writing output... [ 10%] emodpy_malaria.demographics.MalariaDemographics writing output... [ 14%] emodpy_malaria.interventions writing output... [ 17%] emodpy_malaria.interventions.bednet writing output... [ 21%] emodpy_malaria.interventions.common writing output... [ 25%] emodpy_malaria.interventions.diag_survey writing output... [ 28%] emodpy_malaria.interventions.drug writing output... [ 32%] emodpy_malaria.interventions.drug_campaign writing output... [ 35%] emodpy_malaria.interventions.inputeir writing output... [ 39%] emodpy_malaria.interventions.irs writing output... [ 42%] emodpy_malaria.interventions.ivermectin writing output... [ 46%] emodpy_malaria.interventions.mosquitorelease writing output... [ 50%] emodpy_malaria.interventions.outbreak writing output... [ 53%] emodpy_malaria.interventions.outdoorrestkill writing output... [ 57%] emodpy_malaria.interventions.spacespraying writing output... [ 60%] emodpy_malaria.interventions.sugartrap writing output... [ 64%] emodpy_malaria.interventions.treatment_seeking writing output... [ 67%] emodpy_malaria.interventions.udbednet writing output... [ 71%] emodpy_malaria.malaria_config writing output... [ 75%] emodpy_malaria.reporters writing output... [ 78%] emodpy_malaria.reporters.builtin writing output... [ 82%] emodpy_malaria.vector_config writing output... [ 85%] emodpy_malaria_index writing output... [ 89%] faq writing output... [ 92%] index writing output... [ 96%] installation writing output... [100%] installation-basic generating indices... genindex py-modindex done writing additional pages... search opensearch done copying static files... done copying extra files... done dumping search index in English (code: en)... done dumping object inventory... done build succeeded. The HTML pages are in _build/html. Updating searchtools for Read the Docs search... [rtd-command-info] start-time: 2021-09-25T00:42:08.896965Z, end-time: 2021-09-25T00:42:11.049559Z, duration: 2, exit-code: 0 python -m sphinx -T -W --keep-going -b readthedocssinglehtmllocalmedia -d _build/doctrees -D language=en . _build/localmedia Running Sphinx v3.3.1 rm: cannot remove 'modules.rst': No such file or directory make: [generate-api] Error 1 (ignored) loading translations [en]... done making output directory... done loading pickled environment... done building [mo]: targets for 0 po files that are out of date building [readthedocssinglehtmllocalmedia]: all documents updating environment: 0 added, 1 changed, 0 removed reading sources... [100%] emodpy_malaria_index looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done assembling single document... installation installation-basic faq emodpy_malaria_index emodpy_malaria emodpy_malaria.demographics emodpy_malaria.demographics.MalariaDemographics emodpy_malaria.interventions emodpy_malaria.interventions.bednet emodpy_malaria.interventions.common emodpy_malaria.interventions.diag_survey emodpy_malaria.interventions.drug emodpy_malaria.interventions.drug_campaign emodpy_malaria.interventions.inputeir emodpy_malaria.interventions.irs emodpy_malaria.interventions.ivermectin emodpy_malaria.interventions.mosquitorelease emodpy_malaria.interventions.outbreak emodpy_malaria.interventions.outdoorrestkill emodpy_malaria.interventions.spacespraying emodpy_malaria.interventions.sugartrap emodpy_malaria.interventions.treatment_seeking emodpy_malaria.interventions.udbednet emodpy_malaria.reporters emodpy_malaria.reporters.builtin emodpy_malaria.malaria_config emodpy_malaria.vector_config done writing... done writing additional files... opensearchdone copying static files... done copying extra files... done dumping object inventory... done build succeeded. The HTML page is in _build/localmedia. Updating searchtools for Read the Docs search... [rtd-command-info] start-time: 2021-09-25T00:42:11.196845Z, end-time: 2021-09-25T00:42:13.252046Z, duration: 2, exit-code: 0 python -m sphinx -b latex -D language=en -d _build/doctrees . _build/latex Running Sphinx v3.3.1 rm: cannot remove 'modules.rst': No such file or directory make: [generate-api] Error 1 (ignored) loading translations [en]... done making output directory... done loading pickled environment... done building [mo]: targets for 0 po files that are out of date building [latex]: all documents updating environment: 0 added, 1 changed, 0 removed reading sources... [100%] emodpy_malaria_index looking for now-outdated files... none found pickling environment... done checking consistency... done processing emodpy-malaria-docs.tex... index installation installation-basic faq emodpy_malaria_index emodpy_malaria emodpy_malaria.demographics emodpy_malaria.demographics.MalariaDemographics emodpy_malaria.interventions emodpy_malaria.interventions.bednet emodpy_malaria.interventions.common emodpy_malaria.interventions.diag_survey emodpy_malaria.interventions.drug emodpy_malaria.interventions.drug_campaign emodpy_malaria.interventions.inputeir emodpy_malaria.interventions.irs emodpy_malaria.interventions.ivermectin emodpy_malaria.interventions.mosquitorelease emodpy_malaria.interventions.outbreak emodpy_malaria.interventions.outdoorrestkill emodpy_malaria.interventions.spacespraying emodpy_malaria.interventions.sugartrap emodpy_malaria.interventions.treatment_seeking emodpy_malaria.interventions.udbednet emodpy_malaria.reporters emodpy_malaria.reporters.builtin emodpy_malaria.malaria_config emodpy_malaria.vector_config resolving references... done writing... done copying TeX support files... copying TeX support files... done build succeeded. The LaTeX files are in _build/latex. Run 'make' in that directory to run these through (pdf)latex (use `make latexpdf' here to do that automatically). WARNING: Missing searchtools: /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/checkouts/latest/docs/_build/latex/_static/searchtools.js [rtd-command-info] start-time: 2021-09-25T00:42:13.454508Z, end-time: 2021-09-25T00:42:13.529275Z, duration: 0, exit-code: 0 cat latexmkrc $latex = 'latex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $pdflatex = 'pdflatex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $lualatex = 'lualatex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $xelatex = 'xelatex --no-pdf ' . $ENV{'LATEXOPTS'} . ' %O %S'; $makeindex = 'makeindex -s python.ist %O -o %D %S'; add_cus_dep( "glo", "gls", 0, "makeglo" ); sub makeglo { return system( "makeindex -s gglo.ist -o '$_[0].gls' '$_[0].glo'" ); } [rtd-command-info] start-time: 2021-09-25T00:42:13.637349Z, end-time: 2021-09-25T00:42:16.215306Z, duration: 2, exit-code: 0 latexmk -r latexmkrc -pdf -f -dvi- -ps- -jobname=institute-for-disease-modeling-emodpy-malaria -interaction=nonstopmode Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 1, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 2, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 3, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 4, chunk 1. Subroutine makeglo redefined at (eval 11) line 7, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 1, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 2, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 3, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 4, chunk 1. Latexmk: This is Latexmk, John Collins, 1 January 2015, version: 4.41. File::Glob::glob() will disappear in perl 5.30. Use File::Glob::bsd_glob() instead. at /usr/bin/latexmk line 7482. Rule 'pdflatex': Rules & subrules not known to be previously run: pdflatex Rule 'pdflatex': The following rules & subrules became out-of-date: 'pdflatex' ------------ Run number 1 of rule 'pdflatex' ------------ Latexmk: applying rule 'pdflatex'... ------------ Running 'pdflatex -interaction=nonstopmode -recorder --jobname="institute-for-disease-modeling-emodpy-malaria" "emodpy-malaria-docs.tex"' ------------ This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./emodpy-malaria-docs.tex LaTeX2e <2017-04-15> Babel <3.18> and hyphenation patterns for 84 language(s) loaded. 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[10] Underfull \hbox (badness 10000) in paragraph at lines 616--616 [][]\T1/ptm/m/it/10 float[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 block-ing_pre decay_duration: Underfull \hbox (badness 10000) in paragraph at lines 616--616 [][]\T1/ptm/m/it/10 int[][] = 365\T1/ptm/m/n/10 , \T1/ptm/m/it/10 killing_decay _rate: [][]float[][] Underfull \hbox (badness 10000) in paragraph at lines 616--616 \T1/ptm/m/it/10 = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 killing_predecay_duration: [][]int[][] Underfull \hbox (badness 10000) in paragraph at lines 616--616 \T1/ptm/m/it/10 = 365\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-pelling_decay_rate: [] []float[][] = Underfull \hbox (badness 10000) in paragraph at lines 616--616 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-pelling_predecay_duration: [][]int[][] = Underfull \hbox (badness 5091) in paragraph at lines 616--616 \T1/ptm/m/it/10 365\T1/ptm/m/n/10 , \T1/ptm/m/it/10 us-age_decay_rate: [][]floa t[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 us- [11] Underfull \hbox (badness 10000) in paragraph at lines 693--693 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age=1.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 693--693 \T1/ptm/m/it/10 block-ing_eff=1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 killing_eff=1\T 1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 736--736 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day\T1/ptm/m/n/10 , [12] Underfull \hbox (badness 10000) in paragraph at lines 767--767 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Mea-sure- Underfull \hbox (badness 10000) in paragraph at lines 767--767 \T1/ptm/m/it/10 ment_Sensitivity\T1/ptm/m/n/10 , \T1/ptm/m/it/10 De-tec- Underfull \hbox (badness 10000) in paragraph at lines 767--767 \T1/ptm/m/it/10 tion_Threshold\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Di-ag-nos- Overfull \hbox (31.21352pt too wide) in paragraph at lines 836--836 \T1/ptm/m/it/10 tsteps_btwn_repetitions: Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 get: [][]ob-ject[][] Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Ev-ery-one\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 6364) in paragraph at lines 836--836 \T1/ptm/m/it/10 start_day: [][]int[][] Underfull \hbox (badness 5203) in paragraph at lines 836--836 \T1/ptm/m/it/10 = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 di-ag-nos- Overfull \hbox (63.55446pt too wide) in paragraph at lines 836--836 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 BLOOD_SMEAR_PARASITES\TS1/ptm/m/it/10 '\T1/pt m/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 di-ag-nos- Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 tic_threshold: Underfull \hbox (badness 10000) in paragraph at lines 836--836 [][]\T1/ptm/m/it/10 float[][] = 40\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 mea-sure- Overfull \hbox (1.01384pt too wide) in paragraph at lines 836--836 \T1/ptm/m/it/10 ment_sensitivity: Underfull \hbox (badness 10000) in paragraph at lines 836--836 [][]\T1/ptm/m/it/10 float[][] = 0.1\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 event_name: Underfull \hbox (badness 10000) in paragraph at lines 836--836 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Di-ag- Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 nos-tic Sur-vey\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 6364) in paragraph at lines 836--836 \T1/ptm/m/it/10 node_ids: [][]list[][] Overfull \hbox (27.58405pt too wide) in paragraph at lines 836--836 \T1/ptm/m/it/10 tive_diagnosis_configs: Underfull \hbox (badness 10000) in paragraph at lines 836--836 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 neg-a- Overfull \hbox (27.58405pt too wide) in paragraph at lines 836--836 \T1/ptm/m/it/10 tive_diagnosis_configs: Overfull \hbox (6.95406pt too wide) in paragraph at lines 836--836 \T1/ptm/m/it/10 ceived_test_event: Underfull \hbox (badness 10000) in paragraph at lines 836--836 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Re- Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 ceived_Test\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 IP_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 836--836 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 NP_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 836--836 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 dis-qual-i-fy- Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 ing_properties: Overfull \hbox (9.814pt too wide) in paragraph at lines 836--836 \T1/ptm/m/it/10 ger_condition_list: Underfull \hbox (badness 10000) in paragraph at lines 836--836 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 lis-ten- Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 ing_duration: Overfull \hbox (29.97432pt too wide) in paragraph at lines 836--836 \T1/ptm/m/it/10 gered_campaign_delay: Underfull \hbox (badness 10000) in paragraph at lines 836--836 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , Overfull \hbox (47.68343pt too wide) in paragraph at lines 836--836 \T1/ptm/m/it/10 check_eligibility_at_trigger: Overfull \hbox (9.71407pt too wide) in paragraph at lines 836--836 \T1/ptm/m/it/10 pire_recent_drugs: LaTeX Warning: Hyper 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[13] [14] Underfull \hbox (badness 10000) in paragraph at lines 869--872 []\T1/pcr/b/n/10 diagnostic_type \T1/ptm/m/n/10 ^^U Type of malaria di-ag-nos-t ic used. De-fault is Underfull \hbox (badness 10000) in paragraph at lines 911--914 []\T1/ptm/m/n/10 In ga-me-to-cytes/microliter, use mea-sure- LaTeX Warning: Hyper reference `emodpy_malaria.interventions.common:emodpy_mala ria.interventions.common.MalariaDiagnostic' on page 15 undefined on input line 935. Underfull \hbox (badness 10000) in paragraph at lines 934--936 []\T1/pcr/b/n/10 measurement_sensitivity \T1/ptm/m/n/10 ^^U Set-ting for \T1/pt m/b/n/10 Mea-sure-ment_Sensitivity \T1/ptm/m/n/10 in [15] Underfull \hbox (badness 10000) in paragraph at lines 957--962 []\T1/pcr/b/n/10 IP_restrictions \T1/ptm/m/n/10 ^^U List of In-di-vid-u-al-Prop -erty key:value pairs that Underfull \hbox (badness 10000) in paragraph at lines 957--962 \T1/ptm/m/n/10 in-di-vid-u-als must have to re-ceive the di-ag-nos-tic in-ter-v en-tion. For Underfull \hbox (badness 10000) in paragraph at lines 957--962 \T1/ptm/m/n/10 ex-am-ple, \T1/pcr/m/n/10 [{"IndividualProperty1":"PropertyValue 1"}, Underfull \hbox (badness 10000) in paragraph at lines 964--969 []\T1/pcr/b/n/10 NP_restrictions \T1/ptm/m/n/10 ^^U List of Node-Prop-erty key: value pairs Underfull \hbox (badness 10000) in paragraph at lines 964--969 \T1/ptm/m/n/10 that nodes must have to re-ceive the di-ag-nos-tic in-ter-ven-ti on. Underfull \hbox (badness 10000) in paragraph at lines 964--969 \T1/ptm/m/n/10 For ex-am-ple, \T1/pcr/m/n/10 [{"NodeProperty1":"PropertyValue1" }, Underfull \hbox (badness 10000) in paragraph at lines 971--975 []\T1/pcr/b/n/10 disqualifying_properties \T1/ptm/m/n/10 ^^U List of In-di-vid- u-al-Prop-erty Underfull \hbox (badness 10000) in paragraph at lines 971--975 \T1/ptm/m/n/10 key:value pairs that cause an in-ter-ven-tion to be aborted. For ex- Underfull \hbox (badness 10000) in paragraph at lines 971--975 \T1/ptm/m/n/10 am-ple, \T1/pcr/m/n/10 [{"IndividualProperty1":"PropertyValue1"} , Underfull \hbox (badness 10000) in paragraph at lines 994--997 []\T1/pcr/b/n/10 expire_recent_drugs \T1/ptm/m/n/10 ^^U Adds \T1/pcr/m/n/10 [{" DrugStatus:None"}] \T1/ptm/m/n/10 to \T1/ptm/b/n/10 Prop- [16] Underfull \hbox (badness 10000) in paragraph at lines 1083--1083 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1083--1083 \T1/ptm/m/it/10 drug_code: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cam- Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 paign_type: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 MDA\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 6775) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_days: Overfull \hbox (19.21352pt too wide) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 tsteps_btwn_repetitions: Underfull \hbox (badness 7344) in paragraph at lines 1114--1114 [][]\T1/ptm/m/it/10 int[][] = 60\T1/ptm/m/n/10 , \T1/ptm/m/it/10 di-ag- Overfull \hbox (51.55446pt too wide) in paragraph at lines 1114--1114 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 BLOOD_SMEAR_PARASITES\TS1/ptm/m/it/10 '\T1/pt m/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 di-ag-nos- Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 = 40\T1/ptm/m/n/10 , \T1/ptm/m/it/10 mea-sure- Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 ment_sensitivity: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 [][]\T1/ptm/m/it/10 float[][] = 0.1\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 fmda_radius: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , Overfull \hbox (6.22408pt too wide) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 node_selection_type: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 DIS- Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 TANCE_ONLY\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 trig-ger_coverage: Underfull \hbox (badness 5667) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 balls: [][]int[][] = 0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 treat-ment_delay: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 trig- Overfull \hbox (17.97432pt too wide) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 gered_campaign_delay: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 tar-get_group: Overfull \hbox (33.88365pt too wide) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 drug_ineligibility_duration: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , Overfull \hbox (33.19351pt too wide) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Overfull \hbox (26.53346pt too wide) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 dis-qual-i-fy- Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 ing_properties: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 ger_condition_list: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 ten-ing_duration: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 ent_drug_configs: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 get_residents_only: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 [][]\T1/ptm/m/it/10 int[][] = 1\T1/ptm/m/n/10 , Overfull \hbox (35.68343pt too wide) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 check_eligibility_at_trigger: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 [][]\T1/ptm/m/it/10 bool[][] = Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 False\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-ceiv- Overfull \hbox (144.47322pt too wide) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 ing_drugs_event_name=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Received _Campaign_Drugs\TS1/ptm/m/it/10 '\T1/pcr/m/n/10 ) [17] [18] [19] Underfull \hbox (badness 10000) in paragraph at lines 1265--1268 []\T1/pcr/b/n/10 ind_property_restrictions \T1/ptm/m/n/10 ^^U The set-ting for \T1/ptm/b/n/10 Prop- Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_days: [][]list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age: [][]float[][] = Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 drug_configs: [][]list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-ceiv-ing_drugs_event: Overfull \hbox (57.71327pt too wide) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 emod_api.interventions.common.BroadcastEvent Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 rep-e-ti-tions: [][]int[ ][] = Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tsteps_btwn_repetitions: Underfull \hbox (badness 6348) in paragraph at lines 1310--1310 [][]\T1/ptm/m/it/10 int[][] = 60\T1/ptm/m/n/10 , \T1/ptm/m/it/10 node_ids: [][] list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ex-pire_recent_drugs: Overfull \hbox (86.50304pt too wide) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 emod_api.interventions.common.PropertyValueChanger Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 6032) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 dis-qual-i- fy- Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 ing_properties: [][]list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 trig-ger_condition_list: [][]list[][] = LaTeX Warning: Hyper reference `emodpy_malaria.interventions.drug_campaign:emod py_malaria.interventions.drug_campaign.add_drug_campaign' on page 20 undefined on input line 1312. [20] Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_days: [][]list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age: [][]float[][] = Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 \T1/ptm/m/it/10 1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 drug_configs: [][]list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-ceiv-ing_drugs_event: Overfull \hbox (63.71327pt too wide) in paragraph at lines 1325--1325 \T1/ptm/m/it/10 emod_api.interventions.common.BroadcastEvent Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 \T1/ptm/m/it/10 tsteps_btwn_repetitions: [][]int[][] Underfull \hbox (badness 7504) in paragraph at lines 1325--1325 \T1/ptm/m/it/10 = 60\T1/ptm/m/n/10 , \T1/ptm/m/it/10 treat-ment_delay: [][]int[ ][] Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 BLOOD_SMEAR_PARASITES\TS1/ptm/m/it/10 '\T1/pt m/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 \T1/ptm/m/it/10 40\T1/ptm/m/n/10 , \T1/ptm/m/it/10 mea-sure-ment_sensitivity: Underfull \hbox (badness 6063) in paragraph at lines 1325--1325 [][]\T1/ptm/m/it/10 float[][] = 0.1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 node_ids: [ ][]list[][] Overfull \hbox (92.50304pt too wide) in paragraph at lines 1325--1325 \T1/ptm/m/it/10 emod_api.interventions.common.PropertyValueChanger Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar-get_gro up: Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 \T1/ptm/m/it/10 any = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Ev-ery-one\TS1/ptm/m/it /10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 trig- Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 \T1/ptm/m/it/10 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 check_eligibility_at_trigger: LaTeX Warning: Hyper reference `emodpy_malaria.interventions.drug_campaign:emod py_malaria.interventions.drug_campaign.add_drug_campaign' on page 21 undefined on input line 1327. Underfull \hbox (badness 10000) in paragraph at lines 1326--1329 \T1/ptm/m/n/10 Add an MSAT (mass screen-ing and treat-ment) drug in-ter-ven-tio n to your cam-paign. See [21] Underfull \hbox (badness 10000) in paragraph at lines 1340--1340 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_days: [][]list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1340--1340 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 trig-ger_coverage: Underfull \hbox (badness 7221) in paragraph at lines 1340--1340 [][]\T1/ptm/m/it/10 float[][] = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age: [ ][]float[][] Underfull \hbox (badness 7595) in paragraph at lines 1340--1340 \T1/ptm/m/it/10 = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 drug_configs: [][]list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1340--1340 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-ceiv-ing_drugs_event: Overfull \hbox (63.71327pt too wide) in paragraph at lines 1340--1340 \T1/ptm/m/it/10 emod_api.interventions.common.BroadcastEvent Underfull \hbox (badness 10000) in paragraph at lines 1340--1340 \T1/ptm/m/it/10 tsteps_btwn_repetitions: [][]int[][] Underfull \hbox (badness 10000) in paragraph at lines 1340--1340 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 BLOOD_SMEAR_PARASITES\TS1/ptm/m/it/10 '\T1/pt m/m/n/10 , Overfull \hbox (92.50304pt too wide) in paragraph at lines 1340--1340 \T1/ptm/m/it/10 emod_api.interventions.common.PropertyValueChanger Underfull \hbox (badness 10000) in paragraph at lines 1340--1340 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1340--1340 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1340--1340 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1340--1340 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar-get_gro up: Underfull \hbox (badness 10000) in paragraph at lines 1340--1340 \T1/ptm/m/it/10 any = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Ev-ery-one\TS1/ptm/m/it /10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 trig- LaTeX Warning: Hyper reference `emodpy_malaria.interventions.drug_campaign:emod py_malaria.interventions.drug_campaign.add_drug_campaign' on page 22 undefined on input line 1342. Underfull \hbox (badness 7869) in paragraph at lines 1341--1344 \T1/ptm/m/n/10 Add an fMDA (fo-cal mass drug ad-min-is-tra-tion) drug in-ter-ve n-tion to your cam-paign. See Underfull \hbox (badness 10000) in paragraph at lines 1355--1355 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day: [][]int[][] = Underfull \hbox (badness 6141) in paragraph at lines 1355--1355 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age: [][]float[][] = 1 \T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1355--1355 \T1/ptm/m/it/10 re-ceiv-ing_drugs_event: Overfull \hbox (75.71327pt too wide) in paragraph at lines 1355--1355 \T1/ptm/m/it/10 emod_api.interventions.common.BroadcastEvent Overfull \hbox (9.55446pt too wide) in paragraph at lines 1355--1355 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 BLOOD_SMEAR_PARASITES\TS1/ptm/m/it/10 '\T1/pt m/m/n/10 , Overfull \hbox (104.50304pt too wide) in paragraph at lines 1355--1355 \T1/ptm/m/it/10 emod_api.interventions.common.PropertyValueChanger Underfull \hbox (badness 10000) in paragraph at lines 1355--1355 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1355--1355 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1355--1355 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1355--1355 \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1355--1355 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 dis-qual-i- fy- LaTeX Warning: Hyper reference `emodpy_malaria.interventions.drug_campaign:emod py_malaria.interventions.drug_campaign.add_drug_campaign' on page 22 undefined on input line 1357. [22] Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day: [][]int[][] = Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age: [][]float[][] = 1 \T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 \T1/ptm/m/it/10 re-ceiv-ing_drugs_event: Overfull \hbox (69.71327pt too wide) in paragraph at lines 1370--1370 \T1/ptm/m/it/10 emod_api.interventions.common.BroadcastEvent Underfull \hbox (badness 7613) in paragraph at lines 1370--1370 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lis-ten-ing_duration: Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 trig-ger_covera ge: Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 \T1/ptm/m/it/10 = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 node_selection_type: Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 DIS-TANCE_ONLY\ TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 \T1/ptm/m/it/10 node_ids: [][]list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 \T1/ptm/m/it/10 ex-pire_recent_drugs: Overfull \hbox (98.50304pt too wide) in paragraph at lines 1370--1370 \T1/ptm/m/it/10 emod_api.interventions.common.PropertyValueChanger Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 dis-qual-i- fy- LaTeX Warning: Hyper reference `emodpy_malaria.interventions.drug_campaign:emod py_malaria.interventions.drug_campaign.add_drug_campaign' on page 23 undefined on input line 1372. Underfull \hbox (badness 10000) in paragraph at lines 1385--1385 \T1/ptm/m/it/10 TANCE_ONLY\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ev ent_trigger: [23] Underfull \hbox (badness 5091) in paragraph at lines 1448--1448 [][]\T1/ptm/m/it/10 int[][] = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 node_ids: [][]l ist[][] = None\T1/ptm/m/n/10 , [24] Underfull \hbox (badness 10000) in paragraph at lines 1485--1485 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1485--1485 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 5274) in paragraph at lines 1521--1521 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er- Underfull \hbox (badness 10000) in paragraph at lines 1521--1521 \T1/ptm/m/it/10 killing_eff=1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in- Underfull \hbox (badness 10000) in paragraph at lines 1521--1521 \T1/ptm/m/it/10 sec-ti-cide=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1542--1542 []\T1/ptm/m/it/10 schema_path_container\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1542--1542 [][]\T1/ptm/m/it/10 float[][] = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-mo- Underfull \hbox (badness 10000) in paragraph at lines 1542--1542 \T1/ptm/m/it/10 killing_exponential_decay_rate: [25] Underfull \hbox (badness 10000) in paragraph at lines 1585--1585 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1585--1585 \T1/ptm/m/it/10 re-leased_number: Underfull \hbox (badness 5954) in paragraph at lines 1585--1585 [][]\T1/ptm/m/it/10 int[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 1585--1585 \T1/ptm/m/it/10 leased_fraction: Underfull \hbox (badness 10000) in paragraph at lines 1585--1585 \T1/ptm/m/it/10 leased_infectious: Underfull \hbox (badness 10000) in paragraph at lines 1585--1585 [][]\T1/ptm/m/it/10 float[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 1585--1585 \T1/ptm/m/it/10 leased_species: Underfull \hbox (badness 10000) in paragraph at lines 1585--1585 \T1/ptm/m/it/10 re-leased_genome: Underfull \hbox (badness 10000) in paragraph at lines 1585--1585 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1605--1607 []\T1/pcr/b/n/10 released_infectious \T1/ptm/m/n/10 ^^U The frac-tion of vec-to rs re-leased that Underfull \hbox (badness 10000) in paragraph at lines 1605--1607 \T1/ptm/m/n/10 are to be in-fec-tious. One can only use this fea-ture when Overfull \hbox (16.27205pt too wide) in paragraph at lines 1605--1607 \T1/ptm/m/n/10 `Malaria_Model'!='MALARIA_MECHANISTIC_MODEL_WITH_PARASITE_GENETI CS' Underfull \hbox (badness 10000) in paragraph at lines 1631--1631 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Overfull \hbox (16.35448pt too wide) in paragraph at lines 1631--1631 \T1/ptm/m/it/10 start_day: Underfull \hbox (badness 10000) in paragraph at lines 1631--1631 [][]\T1/ptm/m/it/10 int[][] Underfull \hbox (badness 10000) in paragraph at lines 1631--1631 \T1/ptm/m/it/10 = 1\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1631--1631 \T1/ptm/m/it/10 file- Overfull \hbox (2.35487pt too wide) in paragraph at lines 1631--1631 \T1/ptm/m/it/10 None\T1/pcr/m/n/10 ) [26] Underfull \hbox (badness 10000) in paragraph at lines 1657--1657 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1657--1657 \T1/ptm/m/it/10 start_day: [][]int[][] Underfull \hbox (badness 10000) in paragraph at lines 1657--1657 \T1/ptm/m/it/10 = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-mo- Overfull \hbox (2.73457pt too wide) in paragraph at lines 1657--1657 \T1/ptm/m/it/10 graphic_coverage: Overfull \hbox (14.36418pt too wide) in paragraph at lines 1657--1657 \T1/ptm/m/it/10 get_num_individuals: Underfull \hbox (badness 10000) in paragraph at lines 1657--1657 [][]\T1/ptm/m/it/10 int[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1657--1657 \T1/ptm/m/it/10 node_ids: [][]list[][] Overfull \hbox (52.97314pt too wide) in paragraph at lines 1657--1657 \T1/ptm/m/it/10 timesteps_between_repetitions: Underfull \hbox (badness 10000) in paragraph at lines 1657--1657 [][]\T1/ptm/m/it/10 int[][] = 365\T1/ptm/m/n/10 , Overfull \hbox (32.53346pt too wide) in paragraph at lines 1657--1657 \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1657--1657 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Overfull \hbox (39.19351pt too wide) in paragraph at lines 1657--1657 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1657--1657 \T1/ptm/m/it/10 get_age_min: Underfull \hbox (badness 10000) in paragraph at lines 1657--1657 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar- Underfull \hbox (badness 10000) in paragraph at lines 1657--1657 \T1/ptm/m/it/10 get_age_max: Underfull \hbox (badness 10000) in paragraph at lines 1657--1657 \T1/ptm/m/it/10 get_gender: Underfull \hbox (badness 5359) in paragraph at lines 1657--1657 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 All\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ig- Underfull \hbox (badness 10000) in paragraph at lines 1657--1657 \T1/ptm/m/it/10 nore_immunity: Underfull \hbox (badness 10000) in paragraph at lines 1657--1657 [][]\T1/ptm/m/it/10 bool[][] = True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1657--1657 \T1/ptm/m/it/10 in-cu-ba- Overfull \hbox (16.02399pt too wide) in paragraph at lines 1657--1657 \T1/ptm/m/it/10 tion_period_override: [27] Underfull \hbox (badness 5893) in paragraph at lines 1681--1683 []\T1/pcr/b/n/10 repetitions \T1/ptm/m/n/10 ^^U The num-ber of times an in-ter- ven-tion is given, used with Overfull \hbox (5.18481pt too wide) in paragraph at lines 1733--1733 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , Overfull \hbox (4.35448pt too wide) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 start_day: Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 de-mo- Overfull \hbox (38.73457pt too wide) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 graphic_coverage: Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 [][]\T1/ptm/m/it/10 float[][] = Overfull \hbox (50.36418pt too wide) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 get_num_individuals: Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 [][]\T1/ptm/m/it/10 int[][] = Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (2.6847pt too wide) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 node_ids: Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 rep-e-ti- Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 tions: Overfull \hbox (88.97314pt too wide) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 timesteps_between_repetitions: Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 [][]\T1/ptm/m/it/10 int[][] Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 = 365\T1/ptm/m/n/10 , Overfull \hbox (68.53346pt too wide) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (75.19351pt too wide) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 tar- Overfull \hbox (17.93463pt too wide) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 get_age_min: Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 [][]\T1/ptm/m/it/10 int[][] = Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar- Overfull \hbox (19.59468pt too wide) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 get_age_max: Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 [][]\T1/ptm/m/it/10 int[][] = Overfull \hbox (11.3646pt too wide) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 get_gender: Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 [][]\T1/ptm/m/it/10 str[][] = Overfull \hbox (26.75435pt too wide) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 nore_immunity: Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 [][]\T1/ptm/m/it/10 bool[][] = Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 in-cu-ba- Overfull \hbox (52.02399pt too wide) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 tion_period_override: Underfull \hbox (badness 5077) in paragraph at lines 1733--1733 [][]\T1/ptm/m/it/10 int[][] = - Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cre- Overfull \hbox (90.54375pt too wide) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 ate_nucleotide_sequence_from: Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 [][]\T1/ptm/m/it/10 str[][] = Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 BAR- Overfull \hbox (33.99452pt too wide) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 CODE_STRING\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 bar- Overfull \hbox (13.79442pt too wide) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 code_string: Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 [][]\T1/ptm/m/it/10 str[][] = Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (52.88371pt too wide) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 drug_resistant_string: Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 [][]\T1/ptm/m/it/10 str[][] = Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (43.23422pt too wide) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 msp_variant_value: Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 [][]\T1/ptm/m/it/10 int[][] = Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (64.34395pt too wide) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 pfemp1_variants_values: Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 bar- Overfull \hbox (155.51305pt too wide) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 code_allele_frequencies_per_genome_location: Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (194.60234pt too wide) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 drug_resistant_allele_frequencies_per_genome_location: Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 [][]\T1/ptm/m/it/10 list[][] = [28] Overfull \vbox (135.66997pt too high) has occurred while \output is active [29] Underfull \hbox (badness 5893) in paragraph at lines 1760--1762 []\T1/pcr/b/n/10 repetitions \T1/ptm/m/n/10 ^^U The num-ber of times an in-ter- ven-tion is given, used with [30] Overfull \hbox (11.18481pt too wide) in paragraph at lines 1849--1849 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , Overfull \hbox (10.35448pt too wide) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 start_day: Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 de-mo- Overfull \hbox (44.73457pt too wide) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 graphic_coverage: Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 [][]\T1/ptm/m/it/10 float[][] Underfull \hbox (badness 8151) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 = 1.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 tar- Overfull \hbox (56.36418pt too wide) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 get_num_individuals: Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 [][]\T1/ptm/m/it/10 int[][] = Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (8.6847pt too wide) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 node_ids: Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 rep-e-ti- Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 tions: Overfull \hbox (94.97314pt too wide) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 timesteps_between_repetitions: Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 [][]\T1/ptm/m/it/10 int[][] = Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 365\T1/ptm/m/n/10 , Overfull \hbox (74.53346pt too wide) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (81.19351pt too wide) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 tar- Overfull \hbox (23.93463pt too wide) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 get_age_min: Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 [][]\T1/ptm/m/it/10 int[][] = Overfull \hbox (25.59468pt too wide) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 get_age_max: Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 [][]\T1/ptm/m/it/10 int[][] = Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 125\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 tar- Overfull \hbox (17.3646pt too wide) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 get_gender: Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 [][]\T1/ptm/m/it/10 str[][] = Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 All\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 ig- Overfull \hbox (32.75435pt too wide) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 nore_immunity: Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 in-cu-ba- Overfull \hbox (58.02399pt too wide) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 tion_period_override: Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 [][]\T1/ptm/m/it/10 int[][] = Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 - 1\T1/ptm/m/n/10 , Overfull \hbox (10.34447pt too wide) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 irbc_type: Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 mi- Overfull \hbox (42.5643pt too wide) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 nor_epitope_type: Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (10.3446pt too wide) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 msp_type: Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 [][]\T1/ptm/m/it/10 int[][] = [31] Overfull \vbox (3.66997pt too high) has occurred while \output is active [32] Underfull \hbox (badness 5893) in paragraph at lines 1876--1878 []\T1/pcr/b/n/10 repetitions \T1/ptm/m/n/10 ^^U The num-ber of times an in-ter- ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 1934--1934 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day: Underfull \hbox (badness 10000) in paragraph at lines 1934--1934 [][]\T1/ptm/m/it/10 int[][] = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-mo- Underfull \hbox (badness 10000) in paragraph at lines 1934--1934 \T1/ptm/m/it/10 graphic_coverage: Underfull \hbox (badness 10000) in paragraph at lines 1934--1934 [][]\T1/ptm/m/it/10 float[][] = 1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar- Underfull \hbox (badness 10000) in paragraph at lines 1934--1934 \T1/ptm/m/it/10 get_num_individuals: Underfull \hbox (badness 10000) in paragraph at lines 1934--1934 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 rep-e- Underfull \hbox (badness 10000) in paragraph at lines 1934--1934 \T1/ptm/m/it/10 ti-tions: [][]int[][] = 1\T1/ptm/m/n/10 , Overfull \hbox (22.97314pt too wide) in paragraph at lines 1934--1934 \T1/ptm/m/it/10 timesteps_between_repetitions: Underfull \hbox (badness 10000) in paragraph at lines 1934--1934 [][]\T1/ptm/m/it/10 int[][] = 365\T1/ptm/m/n/10 , Overfull \hbox (2.53346pt too wide) in paragraph at lines 1934--1934 \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1934--1934 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Overfull \hbox (9.19351pt too wide) in paragraph at lines 1934--1934 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1934--1934 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar- Underfull \hbox (badness 10000) in paragraph at lines 1934--1934 \T1/ptm/m/it/10 get_age_min: [][]int[][] = [33] Underfull \hbox (badness 5893) in paragraph at lines 1960--1962 []\T1/pcr/b/n/10 repetitions \T1/ptm/m/n/10 ^^U The num-ber of times an in-ter- ven-tion is given, used with [34] Underfull \hbox (badness 10000) in paragraph at lines 2001--2001 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2001--2001 \T1/ptm/m/it/10 cide_name: Overfull \hbox (29.51352pt too wide) in paragraph at lines 2001--2001 \T1/ptm/m/it/10 killing_initial_effect: Underfull \hbox (badness 10000) in paragraph at lines 2001--2001 [][]\T1/ptm/m/it/10 float[][] = 1\T1/ptm/m/n/10 , Overfull \hbox (32.87419pt too wide) in paragraph at lines 2001--2001 \T1/ptm/m/it/10 killing_box_duration: Underfull \hbox (badness 10000) in paragraph at lines 2001--2001 [][]\T1/ptm/m/it/10 int[][] = 365\T1/ptm/m/n/10 , Overfull \hbox (74.87367pt too wide) in paragraph at lines 2001--2001 \T1/ptm/m/it/10 killing_exponential_decay_rate: Underfull \hbox (badness 10000) in paragraph at lines 2001--2001 [][]\T1/ptm/m/it/10 float[][] = 0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2043--2043 \T1/ptm/m/it/10 = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 spray_coverage: [35] Overfull \hbox (5.18481pt too wide) in paragraph at lines 2068--2068 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , Overfull \hbox (4.35448pt too wide) in paragraph at lines 2068--2068 \T1/ptm/m/it/10 start_day: Underfull \hbox (badness 10000) in paragraph at lines 2068--2068 \T1/ptm/m/it/10 file- Underfull \hbox (badness 10000) in paragraph at lines 2068--2068 \T1/ptm/m/it/10 name: Underfull \hbox (badness 10000) in paragraph at lines 2068--2068 [][]\T1/ptm/m/it/10 str[][] = Underfull \hbox (badness 6893) in paragraph at lines 2085--2085 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day: [][]int[] [] = 0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2129--2129 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , [36] Underfull \hbox (badness 10000) in paragraph at lines 2149--2149 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Overfull \hbox (10.35448pt too wide) in paragraph at lines 2149--2149 \T1/ptm/m/it/10 start_day: Underfull \hbox (badness 10000) in paragraph at lines 2149--2149 \T1/ptm/m/it/10 tar-gets: Underfull \hbox (badness 10000) in paragraph at lines 2149--2149 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2149--2149 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2149--2149 \T1/ptm/m/it/10 drug: Underfull \hbox (badness 10000) in paragraph at lines 2149--2149 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2149--2149 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (8.6847pt too wide) in paragraph at lines 2149--2149 \T1/ptm/m/it/10 node_ids: Underfull \hbox (badness 10000) in paragraph at lines 2149--2149 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2149--2149 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (74.53346pt too wide) in paragraph at lines 2149--2149 \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 2149--2149 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2149--2149 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (81.88365pt too wide) in paragraph at lines 2149--2149 \T1/ptm/m/it/10 drug_ineligibility_duration: Underfull \hbox (badness 6204) in paragraph at lines 2149--2149 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 du- Underfull \hbox (badness 10000) in paragraph at lines 2149--2149 \T1/ptm/m/it/10 ra-tion: Underfull \hbox (badness 10000) in paragraph at lines 2149--2149 [][]\T1/ptm/m/it/10 int[][] = Underfull \hbox (badness 10000) in paragraph at lines 2149--2149 \T1/ptm/m/it/10 - 1\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2149--2149 \T1/ptm/m/it/10 broad- Overfull \hbox (41.29442pt too wide) in paragraph at lines 2149--2149 \T1/ptm/m/it/10 cast_event_name: Underfull \hbox (badness 10000) in paragraph at lines 2149--2149 [][]\T1/ptm/m/it/10 str[][] = Underfull \hbox (badness 10000) in paragraph at lines 2149--2149 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Re- Overfull \hbox (18.86435pt too wide) in paragraph at lines 2149--2149 \T1/ptm/m/it/10 ceivedTreat- Underfull \hbox (badness 10000) in paragraph at lines 2165--2169 []\T1/pcr/b/n/10 of individuals to target with the intervention. Default is Underfull \hbox (badness 10000) in paragraph at lines 2165--2169 \T1/ptm/m/n/10 (\T1/pcr/m/sl/10 properties\T1/ptm/m/n/10 ) ^^U \T1/pcr/m/n/10 [ { "trigger":"NewClinicalCase","coverage":0. Underfull \hbox (badness 10000) in paragraph at lines 2165--2169 \T1/pcr/m/n/10 8,"agemin":15,"agemax":70, "seek":0.4,"rate":0.3}, Underfull \hbox (badness 10000) in paragraph at lines 2165--2169 \T1/pcr/m/n/10 {"trigger":"NewSevereCase","coverage":0.8,"seek":0.6, Underfull \hbox (badness 10000) in paragraph at lines 2183--2184 []\T1/pcr/b/n/10 must have to receive the intervention. For example, Underfull \hbox (badness 10000) in paragraph at lines 2183--2184 \T1/ptm/m/n/10 (\T1/pcr/m/sl/10 individuals\T1/ptm/m/n/10 ) ^^U \T1/pcr/m/n/10 ["IndividualProperty1:PropertyValue1", [37] Underfull \hbox (badness 10000) in paragraph at lines 2213--2213 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day: [][]int[][] = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 dis- Underfull \hbox (badness 10000) in paragraph at lines 2213--2213 \T1/ptm/m/it/10 0.0013698630136986301\T1/ptm/m/n/10 , \T1/ptm/m/it/10 killing_e ff: Underfull \hbox (badness 10000) in paragraph at lines 2213--2213 \T1/ptm/m/it/10 0.0006849315068493151\T1/ptm/m/n/10 , \T1/ptm/m/it/10 iv_name: Underfull \hbox (badness 10000) in paragraph at lines 2213--2213 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Us-ageDe-pen-de ntBed-net\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2213--2213 \T1/ptm/m/it/10 sonal_dependence: [][]dict[][] = None\T1/ptm/m/n/10 , [38] [39] Underfull \hbox (badness 10000) in paragraph at lines 2412--2412 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2412--2412 \T1/ptm/m/it/10 start_day\T1/ptm/m/n/10 , \T1/ptm/m/it/10 file- [40] Underfull \hbox (badness 10000) in paragraph at lines 2427--2427 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2427--2427 \T1/ptm/m/it/10 start_day: [][]int[][] = Underfull \hbox (badness 10000) in paragraph at lines 2427--2427 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 du-ra-tion_days: Underfull \hbox (badness 10000) in paragraph at lines 2427--2427 [][]\T1/ptm/m/it/10 int[][] = 365000\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2427--2427 \T1/ptm/m/it/10 clude_vector_state: Underfull \hbox (badness 10000) in paragraph at lines 2427--2427 [][]\T1/ptm/m/it/10 int[][] = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 strat- Underfull \hbox (badness 10000) in paragraph at lines 2427--2427 \T1/ptm/m/it/10 ify_by: [][]str[][] = Underfull \hbox (badness 10000) in paragraph at lines 2427--2427 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 GENOME\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ ptm/m/it/10 com- Overfull \hbox (9.02399pt too wide) in paragraph at lines 2427--2427 \T1/ptm/m/it/10 bine_similar_genomes: Underfull \hbox (badness 10000) in paragraph at lines 2427--2427 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 spe- Overfull \hbox (102.76315pt too wide) in paragraph at lines 2427--2427 \T1/ptm/m/it/10 cific_genome_combinations_for_stratification: Underfull \hbox (badness 10000) in paragraph at lines 2427--2427 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 al- Overfull \hbox (64.54318pt too wide) in paragraph at lines 2427--2427 \T1/ptm/m/it/10 lele_combinations_for_stratification: Overfull \hbox (2.32376pt too wide) in paragraph at lines 2427--2427 \T1/ptm/m/it/10 les_for_stratification: Underfull \hbox (badness 10000) in paragraph at lines 2427--2427 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- [41] Underfull \hbox (badness 10000) in paragraph at lines 2507--2507 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2526--2526 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 6893) in paragraph at lines 2526--2526 \T1/ptm/m/it/10 = 365000\T1/ptm/m/n/10 , \T1/ptm/m/it/10 nodes: Underfull \hbox (badness 10000) in paragraph at lines 2526--2526 \T1/ptm/m/it/10 ual_property_filter: Underfull \hbox (badness 10000) in paragraph at lines 2526--2526 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , \T1/ptm/m/it/ 10 in-fec- Underfull \hbox (badness 10000) in paragraph at lines 2526--2526 \T1/ptm/m/it/10 tious-ness_bins: Underfull \hbox (badness 10000) in paragraph at lines 2526--2526 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Overfull \hbox (4.30418pt too wide) in paragraph at lines 2526--2526 \T1/ptm/m/it/10 max_number_reports: Underfull \hbox (badness 7291) in paragraph at lines 2526--2526 [][]\T1/ptm/m/it/10 int[][] = 100\T1/ptm/m/n/10 , \T1/ptm/m/it/10 par-a- Underfull \hbox (badness 10000) in paragraph at lines 2526--2526 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- [42] Underfull \hbox (badness 10000) in paragraph at lines 2587--2587 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i- Underfull \hbox (badness 10000) in paragraph at lines 2603--2603 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2603--2603 \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2603--2603 \T1/ptm/m/it/10 start_day: Underfull \hbox (badness 10000) in paragraph at lines 2603--2603 \T1/ptm/m/it/10 ra-tion_days: Underfull \hbox (badness 10000) in paragraph at lines 2603--2603 \T1/ptm/m/it/10 nodes: Overfull \hbox (3.20416pt too wide) in paragraph at lines 2603--2603 \T1/ptm/m/it/10 pretty_format: Overfull \hbox (15.2441pt too wide) in paragraph at lines 2603--2603 \T1/ptm/m/it/10 port_description: [43] Underfull \hbox (badness 10000) in paragraph at lines 2643--2643 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2643--2643 \T1/ptm/m/it/10 man- Underfull \hbox (badness 10000) in paragraph at lines 2643--2643 \T1/ptm/m/it/10 i-fest\T1/ptm/m/n/10 , Overfull \hbox (10.35448pt too wide) in paragraph at lines 2643--2643 \T1/ptm/m/it/10 start_day: Overfull \hbox (6.45485pt too wide) in paragraph at lines 2643--2643 \T1/ptm/m/it/10 end_day: Underfull \hbox (badness 10000) in paragraph at lines 2643--2643 [][]\T1/ptm/m/it/10 int[][] = Overfull \hbox (1.74501pt too wide) in paragraph at lines 2643--2643 \T1/ptm/m/it/10 365000\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2643--2643 \T1/ptm/m/it/10 re-port- Overfull \hbox (21.46431pt too wide) in paragraph at lines 2643--2643 \T1/ptm/m/it/10 ing_interval: Underfull \hbox (badness 10000) in paragraph at lines 2643--2643 [][]\T1/ptm/m/it/10 int[][] = Overfull \hbox (1.74501pt too wide) in paragraph at lines 2643--2643 \T1/ptm/m/it/10 365000\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2643--2643 \T1/ptm/m/it/10 nodes: Underfull \hbox (badness 10000) in paragraph at lines 2643--2643 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2643--2643 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2643--2643 \T1/ptm/m/it/10 re- Overfull \hbox (28.1245pt too wide) in paragraph at lines 2643--2643 \T1/ptm/m/it/10 port_filename: Underfull \hbox (badness 10000) in paragraph at lines 2643--2643 [][]\T1/ptm/m/it/10 str[][] = Underfull \hbox (badness 10000) in paragraph at lines 2643--2643 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Spa- Underfull \hbox (badness 10000) in paragraph at lines 2643--2643 \T1/ptm/m/it/10 tial-Re- Underfull \hbox (badness 10000) in paragraph at lines 2643--2643 \T1/ptm/m/it/10 port- Underfull \hbox (badness 10000) in paragraph at lines 2643--2643 \T1/ptm/m/it/10 Malar- Underfull \hbox (badness 10000) in paragraph at lines 2643--2643 \T1/ptm/m/it/10 i-aFil- Overfull \hbox (13.23434pt too wide) in paragraph at lines 2643--2643 \T1/ptm/m/it/10 tered.json\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2643--2643 \T1/ptm/m/it/10 spa- Overfull \hbox (56.87419pt too wide) in paragraph at lines 2643--2643 \T1/ptm/m/it/10 tial_output_channels: Underfull \hbox (badness 10000) in paragraph at lines 2643--2643 [][]\T1/ptm/m/it/10 list[][] = [44] Underfull \hbox (badness 10000) in paragraph at lines 2671--2679 \T1/ptm/m/n/10 ^^PBlood_Smear_Gametocyte_Prevalence^^Q, ^^PBlood_Smear_Parasite _Prevalence^^Q, Underfull \hbox (badness 10000) in paragraph at lines 2671--2679 \T1/ptm/m/n/10 ^^PCam-paign_Cost^^Q, ^^PDaily_Bites_Per_Human^^Q, ^^PDaily_EIR^ ^Q, ^^PDis-ease_Deaths^^Q, Underfull \hbox (badness 10000) in paragraph at lines 2671--2679 \T1/ptm/m/n/10 ^^PNew_Reported_Infections^^Q, ^^PNew_Severe_Cases^^Q, ^^PPCR_Ga metocyte_Prevalence^^Q, Underfull \hbox (badness 10000) in paragraph at lines 2671--2679 \T1/ptm/m/n/10 ^^PPCR_Parasite_Prevalence^^Q, ^^PPfHRP2_Prevalence^^Q, ^^PPop-u -la-tion^^Q, ^^PPreva- Underfull \hbox (badness 10000) in paragraph at lines 2671--2679 \T1/ptm/m/n/10 lence^^Q, ^^PRain-fall^^Q, ^^PRel-a-tive_Humidity^^Q, ^^PTrue_Pr evalence^^Q De-faults: Underfull \hbox (badness 10000) in paragraph at lines 2692--2692 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2692--2692 \T1/ptm/m/it/10 start_day: [][]int[][] = Underfull \hbox (badness 10000) in paragraph at lines 2692--2692 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 du-ra-tion_days: Underfull \hbox (badness 10000) in paragraph at lines 2692--2692 [][]\T1/ptm/m/it/10 int[][] = 365000\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2692--2692 \T1/ptm/m/it/10 event_trigger_list: Underfull \hbox (badness 6893) in paragraph at lines 2692--2692 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 nodes: Underfull \hbox (badness 10000) in paragraph at lines 2692--2692 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 2692--2692 \T1/ptm/m/it/10 port_description: Underfull \hbox (badness 10000) in paragraph at lines 2713--2713 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 end_day: Underfull \hbox (badness 10000) in paragraph at lines 2713--2713 [][]\T1/ptm/m/it/10 int[][] = 365000\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in- Underfull \hbox (badness 10000) in paragraph at lines 2713--2713 \T1/ptm/m/it/10 clude_infection_table: Underfull \hbox (badness 10000) in paragraph at lines 2713--2713 [][]\T1/ptm/m/it/10 int[][] = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in- [45] Underfull \hbox (badness 10000) in paragraph at lines 2775--2775 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 7168) in paragraph at lines 2775--2775 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 du-ra-tion_days: Underfull \hbox (badness 10000) in paragraph at lines 2775--2775 [][]\T1/ptm/m/it/10 int[][] = 365000\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2775--2775 \T1/ptm/m/it/10 re-port-ing_interval: Underfull \hbox (badness 10000) in paragraph at lines 2775--2775 [][]\T1/ptm/m/it/10 int[][] = 365000\T1/ptm/m/n/10 , Overfull \hbox (10.30418pt too wide) in paragraph at lines 2775--2775 \T1/ptm/m/it/10 max_number_reports: Underfull \hbox (badness 10000) in paragraph at lines 2775--2775 [][]\T1/ptm/m/it/10 int[][] = 365000\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2775--2775 \T1/ptm/m/it/10 nodes: [][]list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2775--2775 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 age_bins: Underfull \hbox (badness 10000) in paragraph at lines 2775--2775 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2775--2775 \T1/ptm/m/it/10 pretty_format: Underfull \hbox (badness 10000) in paragraph at lines 2775--2775 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 2775--2775 \T1/ptm/m/it/10 port_description: [46] Underfull \hbox (badness 10000) in paragraph at lines 2825--2825 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 7168) in paragraph at lines 2825--2825 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 du-ra-tion_days: Underfull \hbox (badness 10000) in paragraph at lines 2825--2825 [][]\T1/ptm/m/it/10 int[][] = 365000\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2825--2825 \T1/ptm/m/it/10 event_trigger_list: Underfull \hbox (badness 10000) in paragraph at lines 2825--2825 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Overfull \hbox (10.30418pt too wide) in paragraph at lines 2825--2825 \T1/ptm/m/it/10 max_number_reports: Underfull \hbox (badness 10000) in paragraph at lines 2825--2825 [][]\T1/ptm/m/it/10 int[][] = 365000\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2825--2825 \T1/ptm/m/it/10 nodes: [][]list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2825--2825 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in-di-vid- Overfull \hbox (20.78384pt too wide) in paragraph at lines 2825--2825 \T1/ptm/m/it/10 ual_property_to_collect: Underfull \hbox (badness 10000) in paragraph at lines 2825--2825 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2825--2825 \T1/ptm/m/it/10 pretty_format: Underfull \hbox (badness 10000) in paragraph at lines 2825--2825 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 2825--2825 \T1/ptm/m/it/10 port_description: [47] Underfull \hbox (badness 10000) in paragraph at lines 2926--2926 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2926--2926 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in-di-vid- Overfull \hbox (26.78384pt too wide) in paragraph at lines 2926--2926 \T1/ptm/m/it/10 ual_property_to_collect: Underfull \hbox (badness 6526) in paragraph at lines 2926--2926 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , \T1/ptm/m/it/ 10 strat- Underfull \hbox (badness 10000) in paragraph at lines 2926--2926 \T1/ptm/m/it/10 ify_by_gender: Overfull \hbox (47.85474pt too wide) in paragraph at lines 2960--2960 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , Overfull \hbox (49.79494pt too wide) in paragraph at lines 2960--2960 \T1/ptm/m/it/10 man- Overfull \hbox (35.35486pt too wide) in paragraph at lines 2960--2960 \T1/ptm/m/it/10 i- Overfull \hbox (45.63463pt too wide) in paragraph at lines 2960--2960 \T1/ptm/m/it/10 fest\T1/ptm/m/n/10 , Overfull \hbox (46.26491pt too wide) in paragraph at lines 2960--2960 \T1/ptm/m/it/10 bar- Overfull \hbox (55.34474pt too wide) in paragraph at lines 2960--2960 \T1/ptm/m/it/10 codes: Overfull \hbox (41.47458pt too wide) in paragraph at lines 2960--2960 [][]\T1/ptm/m/it/10 list[][] Overfull \hbox (35.99501pt too wide) in paragraph at lines 2960--2960 \T1/ptm/m/it/10 = Overfull \hbox (52.85487pt too wide) in paragraph at lines 2960--2960 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (122.7736pt too wide) in paragraph at lines 2960--2960 \T1/ptm/m/it/10 drug_resistant_strings: Overfull \hbox (41.47458pt too wide) in paragraph at lines 2960--2960 [][]\T1/ptm/m/it/10 list[][] Overfull \hbox (35.99501pt too wide) in paragraph at lines 2960--2960 \T1/ptm/m/it/10 = Overfull \hbox (52.85487pt too wide) in paragraph at lines 2960--2960 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (148.3231pt too wide) in paragraph at lines 2960--2960 \T1/ptm/m/it/10 drug_resistant_statistic_type: Overfull \hbox (39.80469pt too wide) in paragraph at lines 2960--2960 [][]\T1/ptm/m/it/10 str[][] Overfull \hbox (35.99501pt too wide) in paragraph at lines 2960--2960 \T1/ptm/m/it/10 = Overfull \hbox (240.52356pt too wide) in paragraph at lines 2960--2960 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 NUM_PEOPLE_WITH_RESISTANT_INFECTION\TS1/ptm/m /it/10 '\T1/ptm/m/n/10 , Overfull \hbox (68.48471pt too wide) in paragraph at lines 2960--2960 \T1/ptm/m/it/10 age_bins: Overfull \hbox (41.47458pt too wide) in paragraph at lines 2960--2960 [][]\T1/ptm/m/it/10 list[][] Overfull \hbox (35.99501pt too wide) in paragraph at lines 2960--2960 \T1/ptm/m/it/10 = Overfull \hbox (52.85487pt too wide) in paragraph at lines 2960--2960 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (40.35486pt too wide) in paragraph at lines 2960--2960 \T1/ptm/m/it/10 in- Overfull \hbox (40.35486pt too wide) in paragraph at lines 2960--2960 \T1/ptm/m/it/10 di- Overfull \hbox (44.7948pt too wide) in paragraph at lines 2960--2960 \T1/ptm/m/it/10 vid- Overfull \hbox (128.78384pt too wide) in paragraph at lines 2960--2960 \T1/ptm/m/it/10 ual_property_to_collect: Overfull \hbox (39.80469pt too wide) in paragraph at lines 2960--2960 [][]\T1/ptm/m/it/10 str[][] Overfull \hbox (35.99501pt too wide) in paragraph at lines 2960--2960 \T1/ptm/m/it/10 = Overfull \hbox (36.0248pt too wide) in paragraph at lines 2960--2960 \TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , Overfull \hbox (50.76463pt too wide) in paragraph at lines 2960--2960 \T1/ptm/m/it/10 strat- Overfull \hbox (89.68442pt too wide) in paragraph at lines 2960--2960 \T1/ptm/m/it/10 ify_by_gender: Overfull \hbox (39.8048pt too wide) in paragraph at lines 2960--2960 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (35.99501pt too wide) in paragraph at lines 2960--2960 \T1/ptm/m/it/10 = Overfull \hbox (40.24501pt too wide) in paragraph at lines 2960--2960 \T1/ptm/m/it/10 1\T1/pcr/m/n/10 ) [48] [49] Underfull \hbox (badness 10000) in paragraph at lines 3011--3011 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Overfull \hbox (17.85474pt too wide) in paragraph at lines 3040--3040 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , Overfull \hbox (19.79494pt too wide) in paragraph at lines 3040--3040 \T1/ptm/m/it/10 man- Overfull \hbox (5.35486pt too wide) in paragraph at lines 3040--3040 \T1/ptm/m/it/10 i- Overfull \hbox (15.63463pt too wide) in paragraph at lines 3040--3040 \T1/ptm/m/it/10 fest\T1/ptm/m/n/10 , Overfull \hbox (48.68404pt too wide) in paragraph at lines 3040--3040 \T1/ptm/m/it/10 species_list: Overfull \hbox (11.47458pt too wide) in paragraph at lines 3040--3040 [][]\T1/ptm/m/it/10 list[][] Overfull \hbox (5.99501pt too wide) in paragraph at lines 3040--3040 \T1/ptm/m/it/10 = Overfull \hbox (22.85487pt too wide) in paragraph at lines 3040--3040 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (20.76463pt too wide) in paragraph at lines 3040--3040 \T1/ptm/m/it/10 strat- Overfull \hbox (60.89413pt too wide) in paragraph at lines 3040--3040 \T1/ptm/m/it/10 ify_by_species: Overfull \hbox (9.8048pt too wide) in paragraph at lines 3040--3040 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (5.99501pt too wide) in paragraph at lines 3040--3040 \T1/ptm/m/it/10 = Overfull \hbox (6.74501pt too wide) in paragraph at lines 3040--3040 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , Overfull \hbox (10.35486pt too wide) in paragraph at lines 3040--3040 \T1/ptm/m/it/10 in- Overfull \hbox (70.75449pt too wide) in paragraph at lines 3040--3040 \T1/ptm/m/it/10 clude_wolbachia: Overfull \hbox (9.8048pt too wide) in paragraph at lines 3040--3040 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (5.99501pt too wide) in paragraph at lines 3040--3040 \T1/ptm/m/it/10 = Overfull \hbox (6.74501pt too wide) in paragraph at lines 3040--3040 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , Overfull \hbox (10.35486pt too wide) in paragraph at lines 3040--3040 \T1/ptm/m/it/10 in- Overfull \hbox (65.80426pt too wide) in paragraph at lines 3040--3040 \T1/ptm/m/it/10 clude_gestation: Overfull \hbox (9.8048pt too wide) in paragraph at lines 3040--3040 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (5.99501pt too wide) in paragraph at lines 3040--3040 \T1/ptm/m/it/10 = Overfull \hbox (6.74501pt too wide) in paragraph at lines 3040--3040 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , Overfull \hbox (16.26491pt too wide) in paragraph at lines 3040--3040 \T1/ptm/m/it/10 bar- Overfull \hbox (25.34474pt too wide) in paragraph at lines 3040--3040 \T1/ptm/m/it/10 codes: Overfull \hbox (11.47458pt too wide) in paragraph at lines 3040--3040 [][]\T1/ptm/m/it/10 list[][] Overfull \hbox (5.99501pt too wide) in paragraph at lines 3040--3040 \T1/ptm/m/it/10 = Overfull \hbox (26.35487pt too wide) in paragraph at lines 3040--3040 \T1/ptm/m/it/10 None\T1/pcr/m/n/10 ) [50] Underfull \hbox (badness 10000) in paragraph at lines 3080--3080 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pa-ram-e-ters: Underfull \hbox (badness 10000) in paragraph at lines 3080--3080 \T1/ptm/m/it/10 dict = \T1/ptm/m/n/10 , Underfull \hbox (badness 6348) in paragraph at lines 3080--3080 \T1/ptm/m/it/10 En-abled: bool = Underfull \hbox (badness 10000) in paragraph at lines 3128--3128 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pa-ram-e-ters: Underfull \hbox (badness 10000) in paragraph at lines 3128--3128 \T1/ptm/m/it/10 dict = \T1/ptm/m/n/10 , Underfull \hbox (badness 6348) in paragraph at lines 3128--3128 \T1/ptm/m/it/10 En-abled: bool = [51] Underfull \hbox (badness 10000) in paragraph at lines 3152--3152 []\T1/ptm/m/it/10 class_name: Underfull \hbox (badness 10000) in paragraph at lines 3152--3152 \T1/ptm/m/it/10 = \T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3152--3152 \T1/ptm/m/it/10 En-abled: Overfull \hbox (0.5943pt too wide) in paragraph at lines 3152--3152 \T1/ptm/m/it/10 Pretty_Format: Overfull \hbox (55.2345pt too wide) in paragraph at lines 3177--3177 []\T1/ptm/m/it/10 class_name: Overfull \hbox (15.80469pt too wide) in paragraph at lines 3177--3177 \T1/ptm/m/it/10 str Overfull \hbox (11.99501pt too wide) in paragraph at lines 3177--3177 \T1/ptm/m/it/10 = Overfull \hbox (28.85487pt too wide) in paragraph at lines 3177--3177 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (18.57497pt too wide) in paragraph at lines 3177--3177 \T1/ptm/m/it/10 pa- Overfull \hbox (24.53493pt too wide) in paragraph at lines 3177--3177 \T1/ptm/m/it/10 ram- Overfull \hbox (13.01491pt too wide) in paragraph at lines 3177--3177 \T1/ptm/m/it/10 e- Overfull \hbox (23.4746pt too wide) in paragraph at lines 3177--3177 \T1/ptm/m/it/10 ters: Overfull \hbox (20.24474pt too wide) in paragraph at lines 3177--3177 \T1/ptm/m/it/10 dict Overfull \hbox (11.99501pt too wide) in paragraph at lines 3177--3177 \T1/ptm/m/it/10 = Overfull \hbox (27.5448pt too wide) in paragraph at lines 3177--3177 \T1/ptm/m/it/10 \T1/ptm/m/n/10 , Overfull \hbox (19.68495pt too wide) in paragraph at lines 3177--3177 \T1/ptm/m/it/10 En- Overfull \hbox (30.7948pt too wide) in paragraph at lines 3177--3177 \T1/ptm/m/it/10 abled: Overfull \hbox (23.0249pt too wide) in paragraph at lines 3177--3177 \T1/ptm/m/it/10 bool Overfull \hbox (11.99501pt too wide) in paragraph at lines 3177--3177 \T1/ptm/m/it/10 = Overfull \hbox (26.08485pt too wide) in paragraph at lines 3177--3177 \T1/ptm/m/it/10 True\T1/ptm/m/n/10 , Overfull \hbox (66.5943pt too wide) in paragraph at lines 3177--3177 \T1/ptm/m/it/10 Pretty_Format: Overfull \hbox (23.0249pt too wide) in paragraph at lines 3177--3177 \T1/ptm/m/it/10 bool Overfull \hbox (11.99501pt too wide) in paragraph at lines 3177--3177 \T1/ptm/m/it/10 = Overfull \hbox (29.58485pt too wide) in paragraph at lines 3177--3177 \T1/ptm/m/it/10 True\T1/pcr/m/n/10 ) Underfull \hbox (badness 5832) in paragraph at lines 3180--3185 \T1/ptm/m/n/10 The re-port can only be used when the sim-u-la-tion setup pa-ram -e-ter \T1/ptm/b/n/10 Malaria_Model \T1/ptm/m/n/10 is set to Overfull \hbox (13.2345pt too wide) in paragraph at lines 3202--3202 []\T1/ptm/m/it/10 class_name: Underfull \hbox (badness 10000) in paragraph at lines 3202--3202 \T1/ptm/m/it/10 str = Underfull \hbox (badness 10000) in paragraph at lines 3202--3202 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3202--3202 \T1/ptm/m/it/10 pa-ram-e- Underfull \hbox (badness 10000) in paragraph at lines 3202--3202 \T1/ptm/m/it/10 tory>\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3202--3202 \T1/ptm/m/it/10 En-abled: Underfull \hbox (badness 10000) in paragraph at lines 3202--3202 \T1/ptm/m/it/10 bool Underfull \hbox (badness 10000) in paragraph at lines 3202--3202 \T1/ptm/m/it/10 = True\T1/ptm/m/n/10 , Overfull \hbox (24.5943pt too wide) in paragraph at lines 3202--3202 \T1/ptm/m/it/10 Pretty_Format: Underfull \hbox (badness 10000) in paragraph at lines 3202--3202 \T1/ptm/m/it/10 bool = [52] Underfull \hbox (badness 10000) in paragraph at lines 3227--3227 []\T1/ptm/m/it/10 class_name: str = Underfull \hbox (badness 10000) in paragraph at lines 3227--3227 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pa-ram-e-ters: Underfull \hbox (badness 6236) in paragraph at lines 3275--3275 []\T1/ptm/m/it/10 class_name: str = Underfull \hbox (badness 10000) in paragraph at lines 3275--3275 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pa-ram-e-ters: Underfull \hbox (badness 10000) in paragraph at lines 3275--3275 \T1/ptm/m/it/10 dict = \T1/ptm/m/n/10 , [53] Underfull \hbox (badness 10000) in paragraph at lines 3299--3299 []\T1/ptm/m/it/10 class_name: str Underfull \hbox (badness 7291) in paragraph at lines 3299--3299 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pa-ram- Underfull \hbox (badness 10000) in paragraph at lines 3299--3299 \T1/ptm/m/it/10 e-ters: dict = Underfull \hbox (badness 10000) in paragraph at lines 3299--3299 \T1/ptm/m/it/10 \T1/ptm/m/n/10 , \T1/ptm/m/it/10 En- Underfull \hbox (badness 10000) in paragraph at lines 3299--3299 \T1/ptm/m/it/10 Pretty_Format: Underfull \hbox (badness 10000) in paragraph at lines 3328--3328 []\T1/ptm/m/it/10 class_name: Underfull \hbox (badness 10000) in paragraph at lines 3328--3328 \T1/ptm/m/it/10 pa-ram-e- Underfull \hbox (badness 10000) in paragraph at lines 3328--3328 \T1/ptm/m/it/10 \T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3328--3328 \T1/ptm/m/it/10 En-abled: Overfull \hbox (6.5943pt too wide) in paragraph at lines 3328--3328 \T1/ptm/m/it/10 Pretty_Format: Overfull \hbox (13.2345pt too wide) in paragraph at lines 3372--3372 []\T1/ptm/m/it/10 class_name: Underfull \hbox (badness 10000) in paragraph at lines 3372--3372 \T1/ptm/m/it/10 str = Underfull \hbox (badness 10000) in paragraph at lines 3372--3372 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3372--3372 \T1/ptm/m/it/10 pa-ram-e- Underfull \hbox (badness 10000) in paragraph at lines 3372--3372 \T1/ptm/m/it/10 tory>\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3372--3372 \T1/ptm/m/it/10 En-abled: Underfull \hbox (badness 10000) in paragraph at lines 3372--3372 \T1/ptm/m/it/10 bool Underfull \hbox (badness 10000) in paragraph at lines 3372--3372 \T1/ptm/m/it/10 = True\T1/ptm/m/n/10 , Overfull \hbox (24.5943pt too wide) in paragraph at lines 3372--3372 \T1/ptm/m/it/10 Pretty_Format: Underfull \hbox (badness 10000) in paragraph at lines 3372--3372 \T1/ptm/m/it/10 bool = [54] Underfull \hbox (badness 10000) in paragraph at lines 3396--3396 []\T1/ptm/m/it/10 class_name: Underfull \hbox (badness 10000) in paragraph at lines 3396--3396 \T1/ptm/m/it/10 str = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3396--3396 \T1/ptm/m/it/10 pa-ram-e-ters: Underfull \hbox (badness 10000) in paragraph at lines 3396--3396 \T1/ptm/m/it/10 dict = \T1/ptm/m/n/10 , \T1/ptm/m/it/10 En-abled: Underfull \hbox (badness 10000) in paragraph at lines 3396--3396 \T1/ptm/m/it/10 bool = True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3396--3396 \T1/ptm/m/it/10 Pretty_Format: Overfull \hbox (67.2345pt too wide) in paragraph at lines 3419--3419 []\T1/ptm/m/it/10 class_name: Overfull \hbox (27.80469pt too wide) in paragraph at lines 3419--3419 \T1/ptm/m/it/10 str Overfull \hbox (23.99501pt too wide) in paragraph at lines 3419--3419 \T1/ptm/m/it/10 = Overfull \hbox (40.85487pt too wide) in paragraph at lines 3419--3419 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (30.57497pt too wide) in paragraph at lines 3419--3419 \T1/ptm/m/it/10 pa- Overfull \hbox (36.53493pt too wide) in paragraph at lines 3419--3419 \T1/ptm/m/it/10 ram- Overfull \hbox (25.01491pt too wide) in paragraph at lines 3419--3419 \T1/ptm/m/it/10 e- Overfull \hbox (35.4746pt too wide) in paragraph at lines 3419--3419 \T1/ptm/m/it/10 ters: Overfull \hbox (32.24474pt too wide) in paragraph at lines 3419--3419 \T1/ptm/m/it/10 dict Overfull \hbox (23.99501pt too wide) in paragraph at lines 3419--3419 \T1/ptm/m/it/10 = Overfull \hbox (39.5448pt too wide) in paragraph at lines 3419--3419 \T1/ptm/m/it/10 \T1/ptm/m/n/10 , Overfull \hbox (31.68495pt too wide) in paragraph at lines 3419--3419 \T1/ptm/m/it/10 En- Overfull \hbox (42.7948pt too wide) in paragraph at lines 3419--3419 \T1/ptm/m/it/10 abled: Overfull \hbox (35.0249pt too wide) in paragraph at lines 3419--3419 \T1/ptm/m/it/10 bool Overfull \hbox (23.99501pt too wide) in paragraph at lines 3419--3419 \T1/ptm/m/it/10 = Overfull \hbox (38.08485pt too wide) in paragraph at lines 3419--3419 \T1/ptm/m/it/10 True\T1/ptm/m/n/10 , Overfull \hbox (78.5943pt too wide) in paragraph at lines 3419--3419 \T1/ptm/m/it/10 Pretty_Format: Overfull \hbox (35.0249pt too wide) in paragraph at lines 3419--3419 \T1/ptm/m/it/10 bool Overfull \hbox (23.99501pt too wide) in paragraph at lines 3419--3419 \T1/ptm/m/it/10 = Overfull \hbox (41.58485pt too wide) in paragraph at lines 3419--3419 \T1/ptm/m/it/10 True\T1/pcr/m/n/10 ) [55] Underfull \hbox (badness 10000) in paragraph at lines 3447--3447 []\T1/ptm/m/it/10 class_name: str Underfull \hbox (badness 7291) in paragraph at lines 3447--3447 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pa-ram- Underfull \hbox (badness 10000) in paragraph at lines 3447--3447 \T1/ptm/m/it/10 e-ters: dict = Underfull \hbox (badness 10000) in paragraph at lines 3447--3447 \T1/ptm/m/it/10 \T1/ptm/m/n/10 , \T1/ptm/m/it/10 En- Underfull \hbox (badness 10000) in paragraph at lines 3447--3447 \T1/ptm/m/it/10 Pretty_Format: Overfull \hbox (37.2345pt too wide) in paragraph at lines 3471--3471 []\T1/ptm/m/it/10 class_name: Underfull \hbox (badness 10000) in paragraph at lines 3471--3471 \T1/ptm/m/it/10 str Underfull \hbox (badness 10000) in paragraph at lines 3471--3471 \T1/ptm/m/it/10 = Overfull \hbox (10.85487pt too wide) in paragraph at lines 3471--3471 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (0.57497pt too wide) in paragraph at lines 3471--3471 \T1/ptm/m/it/10 pa- Overfull \hbox (6.53493pt too wide) in paragraph at lines 3471--3471 \T1/ptm/m/it/10 ram- Underfull \hbox (badness 10000) in paragraph at lines 3471--3471 \T1/ptm/m/it/10 e- Overfull \hbox (5.4746pt too wide) in paragraph at lines 3471--3471 \T1/ptm/m/it/10 ters: Overfull \hbox (2.24474pt too wide) in paragraph at lines 3471--3471 \T1/ptm/m/it/10 dict Underfull \hbox (badness 10000) in paragraph at lines 3471--3471 \T1/ptm/m/it/10 = Overfull \hbox (9.5448pt too wide) in paragraph at lines 3471--3471 \T1/ptm/m/it/10 \T1/ptm/m/n/10 , Overfull \hbox (1.68495pt too wide) in paragraph at lines 3471--3471 \T1/ptm/m/it/10 En- Overfull \hbox (12.7948pt too wide) in paragraph at lines 3471--3471 \T1/ptm/m/it/10 abled: Overfull \hbox (5.0249pt too wide) in paragraph at lines 3471--3471 \T1/ptm/m/it/10 bool Underfull \hbox (badness 10000) in paragraph at lines 3471--3471 \T1/ptm/m/it/10 = Overfull \hbox (8.08485pt too wide) in paragraph at lines 3471--3471 \T1/ptm/m/it/10 True\T1/ptm/m/n/10 , Overfull \hbox (48.5943pt too wide) in paragraph at lines 3471--3471 \T1/ptm/m/it/10 Pretty_Format: Overfull \hbox (5.0249pt too wide) in paragraph at lines 3471--3471 \T1/ptm/m/it/10 bool Underfull \hbox (badness 10000) in paragraph at lines 3471--3471 \T1/ptm/m/it/10 = Overfull \hbox (11.58485pt too wide) in paragraph at lines 3471--3471 \T1/ptm/m/it/10 True\T1/pcr/m/n/10 ) [56] Underfull \hbox (badness 10000) in paragraph at lines 3524--3524 []\T1/ptm/m/it/10 config\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/ 10 , Overfull \hbox (24.52415pt too wide) in paragraph at lines 3524--3524 \T1/ptm/m/it/10 var_gene_randomness_type: Underfull \hbox (badness 10000) in paragraph at lines 3524--3524 [][]\T1/ptm/m/it/10 str[][] = Underfull \hbox (badness 10000) in paragraph at lines 3525--3527 \T1/ptm/m/n/10 Sets up the de-fault pa-ram-e-ters for par-a-site ge-net-ics sim -u-la-tions Malaria_Model = [57] [58] [59] [60] Underfull \hbox (badness 10000) in paragraph at lines 3907--3907 []\T1/ptm/m/it/10 config\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/ 10 , \T1/ptm/m/it/10 in-sec- Underfull \hbox (badness 6675) in paragraph at lines 3907--3907 \T1/ptm/m/it/10 ti-cide_name: [][]str[][] = \TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , Underfull \hbox (badness 5939) in paragraph at lines 3907--3907 \T1/ptm/m/it/10 species: [][]str[][] = \TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , \T1/ ptm/m/it/10 al- Underfull \hbox (badness 6047) in paragraph at lines 3907--3907 \T1/ptm/m/it/10 block-ing: [][]float[][] = 1.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3907--3907 \T1/ptm/m/it/10 pelling: [][]float[][] = 1.0\T1/ptm/m/n/10 , [61] [62] [63] [64] LaTeX Warning: Reference `emodpy_malaria:module-emodpy_malaria' on page 65 unde fined on input line 4075. LaTeX Warning: Reference `emodpy_malaria.demographics:module-emodpy_malaria.dem ographics' on page 65 undefined on input line 4076. LaTeX Warning: Reference `emodpy_malaria.demographics.MalariaDemographics:modul e-emodpy_malaria.demographics.MalariaDemographics' on page 65 undefined on inpu t line 4077. Overfull \hbox (54.6225pt too wide) in paragraph at lines 4077--4078 []\T1/pcr/m/n/10 emodpy_malaria.demographics.MalariaDemographics\T1/ptm/m/n/10 , LaTeX Warning: Reference `emodpy_malaria.interventions:module-emodpy_malaria.in terventions' on page 65 undefined on input line 4078. LaTeX Warning: Reference `emodpy_malaria.interventions.bednet:module-emodpy_mal aria.interventions.bednet' on page 65 undefined on input line 4079. LaTeX Warning: Reference `emodpy_malaria.interventions.common:module-emodpy_mal aria.interventions.common' on page 65 undefined on input line 4080. LaTeX Warning: Reference `emodpy_malaria.interventions.diag_survey:module-emodp y_malaria.interventions.diag_survey' on page 65 undefined on input line 4081. Overfull \hbox (12.6225pt too wide) in paragraph at lines 4081--4082 []\T1/pcr/m/n/10 emodpy_malaria.interventions.diag_survey\T1/ptm/m/n/10 , LaTeX Warning: Reference `emodpy_malaria.interventions.drug:module-emodpy_malar ia.interventions.drug' on page 65 undefined on input line 4082. LaTeX Warning: Reference `emodpy_malaria.interventions.drug_campaign:module-emo dpy_malaria.interventions.drug_campaign' on page 65 undefined on input line 408 3. Overfull \hbox (24.6225pt too wide) in paragraph at lines 4083--4084 []\T1/pcr/m/n/10 emodpy_malaria.interventions.drug_campaign\T1/ptm/m/n/10 , LaTeX Warning: Reference `emodpy_malaria.interventions.inputeir:module-emodpy_m alaria.interventions.inputeir' on page 65 undefined on input line 4084. Underfull \hbox (badness 10000) in paragraph at lines 4084--4085 []\T1/pcr/m/n/10 emodpy_malaria.interventions.inputeir\T1/ptm/m/n/10 , LaTeX Warning: Reference `emodpy_malaria.interventions.irs:module-emodpy_malari a.interventions.irs' on page 65 undefined on input line 4085. LaTeX Warning: Reference `emodpy_malaria.interventions.ivermectin:module-emodpy _malaria.interventions.ivermectin' on page 65 undefined on input line 4086. Overfull \hbox (6.6225pt too wide) in paragraph at lines 4086--4087 []\T1/pcr/m/n/10 emodpy_malaria.interventions.ivermectin\T1/ptm/m/n/10 , LaTeX Warning: Reference `emodpy_malaria.interventions.mosquitorelease:module-e modpy_malaria.interventions.mosquitorelease' on page 65 undefined on input line 4087. 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LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on institute-for-disease-modeling-emodpy-malaria.pdf (69 pages, 280051 bytes). Transcript written on institute-for-disease-modeling-emodpy-malaria.log. Latexmk: Index file 'institute-for-disease-modeling-emodpy-malaria.idx' was written Latexmk: Missing input file: 'institute-for-disease-modeling-emodpy-malaria.ind' from line 'No file institute-for-disease-modeling-emodpy-malaria.ind.' Latexmk: References changed. Latexmk: References changed. Latexmk: Log file says output to 'institute-for-disease-modeling-emodpy-malaria.pdf' Latexmk: Log file says output to 'institute-for-disease-modeling-emodpy-malaria.pdf' Latexmk: List of undefined refs and citations: Reference `emodpy_malaria.demographics.MalariaDemographics:module-emodpy_malaria.demographics.MalariaDemographics' on page 65 undefined on input line 4077 Reference `emodpy_malaria.demographics:module-emodpy_malaria.demographics' on page 65 undefined on input line 4076 Reference `emodpy_malaria.interventions.bednet:module-emodpy_malaria.interventions.bednet' on page 65 undefined on input line 4079 Reference `emodpy_malaria.interventions.common:module-emodpy_malaria.interventions.common' on page 65 undefined on input line 4080 Reference `emodpy_malaria.interventions.diag_survey:module-emodpy_malaria.interventions.diag_survey' on page 65 undefined on input line 4081 Reference `emodpy_malaria.interventions.drug:module-emodpy_malaria.interventions.drug' on page 65 undefined on input line 4082 Reference `emodpy_malaria.interventions.drug_campaign:module-emodpy_malaria.interventions.drug_campaign' on page 65 undefined on input line 4083 Reference `emodpy_malaria.interventions.inputeir:module-emodpy_malaria.interventions.inputeir' on page 65 undefined on input line 4084 Reference `emodpy_malaria.interventions.irs:module-emodpy_malaria.interventions.irs' on page 65 undefined on input line 4085 Reference `emodpy_malaria.interventions.ivermectin:module-emodpy_malaria.interventions.ivermectin' on page 65 undefined on input line 4086 Reference `emodpy_malaria.interventions.mosquitorelease:module-emodpy_malaria.interventions.mosquitorelease' on page 65 undefined on input line 4087 Reference `emodpy_malaria.interventions.outbreak:module-emodpy_malaria.interventions.outbreak' on page 65 undefined on input line 4088 Reference `emodpy_malaria.interventions.outdoorrestkill:module-emodpy_malaria.interventions.outdoorrestkill' on page 65 undefined on input line 4089 Reference `emodpy_malaria.interventions.spacespraying:module-emodpy_malaria.interventions.spacespraying' on page 65 undefined on input line 4090 Reference `emodpy_malaria.interventions.sugartrap:module-emodpy_malaria.interventions.sugartrap' on page 65 undefined on input line 4091 Reference `emodpy_malaria.interventions.treatment_seeking:module-emodpy_malaria.interventions.treatment_seeking' on page 65 undefined on input line 4092 Reference `emodpy_malaria.interventions.udbednet:module-emodpy_malaria.interventions.udbednet' on page 65 undefined on input line 4093 Reference `emodpy_malaria.interventions:module-emodpy_malaria.interventions' on page 65 undefined on input line 4078 Reference `emodpy_malaria.malaria_config:module-emodpy_malaria.malaria_config' on page 65 undefined on input line 4094 Reference `emodpy_malaria.reporters.builtin:module-emodpy_malaria.reporters.builtin' on page 65 undefined on input line 4096 Reference `emodpy_malaria.reporters:module-emodpy_malaria.reporters' on page 65 undefined on input line 4095 Reference `emodpy_malaria.vector_config:module-emodpy_malaria.vector_config' on page 65 undefined on input line 4097 Reference `emodpy_malaria:module-emodpy_malaria' on page 65 undefined on input line 4075 Latexmk: Summary of warnings: Latex failed to resolve 23 reference(s) Rule 'makeindex institute-for-disease-modeling-emodpy-malaria.idx': File changes, etc: Non-existent destination files: 'institute-for-disease-modeling-emodpy-malaria.ind' ------------ Run number 1 of rule 'makeindex institute-for-disease-modeling-emodpy-malaria.idx' ------------ ------------ Running 'makeindex -s python.ist -o "institute-for-disease-modeling-emodpy-malaria.ind" "institute-for-disease-modeling-emodpy-malaria.idx"' ------------ Latexmk: applying rule 'makeindex institute-for-disease-modeling-emodpy-malaria.idx'... This is makeindex, version 2.15 [TeX Live 2017] (kpathsea + Thai support). Scanning style file ./python.ist.......done (7 attributes redefined, 0 ignored). Scanning input file institute-for-disease-modeling-emodpy-malaria.idx....done (176 entries accepted, 0 rejected). Sorting entries....done (1391 comparisons). Generating output file institute-for-disease-modeling-emodpy-malaria.ind....done (380 lines written, 0 warnings). Output written in institute-for-disease-modeling-emodpy-malaria.ind. Transcript written in institute-for-disease-modeling-emodpy-malaria.ilg. 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paragraph at lines 616--616 \T1/ptm/m/it/10 365\T1/ptm/m/n/10 , \T1/ptm/m/it/10 us-age_decay_rate: [][]floa t[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 us- [11] Underfull \hbox (badness 10000) in paragraph at lines 693--693 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age=1.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 693--693 \T1/ptm/m/it/10 block-ing_eff=1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 killing_eff=1\T 1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 736--736 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day\T1/ptm/m/n/10 , [12] Underfull \hbox (badness 10000) in paragraph at lines 767--767 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Mea-sure- Underfull \hbox (badness 10000) in paragraph at lines 767--767 \T1/ptm/m/it/10 ment_Sensitivity\T1/ptm/m/n/10 , \T1/ptm/m/it/10 De-tec- Underfull \hbox (badness 10000) in paragraph at lines 767--767 \T1/ptm/m/it/10 tion_Threshold\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Di-ag-nos- Overfull \hbox (31.21352pt too wide) in paragraph at lines 836--836 \T1/ptm/m/it/10 tsteps_btwn_repetitions: Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 get: [][]ob-ject[][] Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Ev-ery-one\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 6364) in paragraph at lines 836--836 \T1/ptm/m/it/10 start_day: [][]int[][] Underfull \hbox (badness 5203) in paragraph at lines 836--836 \T1/ptm/m/it/10 = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 di-ag-nos- Overfull \hbox (63.55446pt too wide) in paragraph at lines 836--836 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 BLOOD_SMEAR_PARASITES\TS1/ptm/m/it/10 '\T1/pt m/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 di-ag-nos- Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 tic_threshold: Underfull \hbox (badness 10000) in paragraph at lines 836--836 [][]\T1/ptm/m/it/10 float[][] = 40\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 mea-sure- Overfull \hbox (1.01384pt too wide) in paragraph at lines 836--836 \T1/ptm/m/it/10 ment_sensitivity: Underfull \hbox (badness 10000) in paragraph at lines 836--836 [][]\T1/ptm/m/it/10 float[][] = 0.1\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 event_name: Underfull \hbox (badness 10000) in paragraph at lines 836--836 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Di-ag- Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 nos-tic Sur-vey\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 6364) in paragraph at lines 836--836 \T1/ptm/m/it/10 node_ids: [][]list[][] Overfull \hbox (27.58405pt too wide) in paragraph at lines 836--836 \T1/ptm/m/it/10 tive_diagnosis_configs: Underfull \hbox (badness 10000) in paragraph at lines 836--836 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 neg-a- Overfull \hbox (27.58405pt too wide) in paragraph at lines 836--836 \T1/ptm/m/it/10 tive_diagnosis_configs: Overfull \hbox (6.95406pt too wide) in paragraph at lines 836--836 \T1/ptm/m/it/10 ceived_test_event: Underfull \hbox (badness 10000) in paragraph at lines 836--836 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Re- Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 ceived_Test\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 IP_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 836--836 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 NP_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 836--836 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 dis-qual-i-fy- Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 ing_properties: Overfull \hbox (9.814pt too wide) in paragraph at lines 836--836 \T1/ptm/m/it/10 ger_condition_list: Underfull \hbox (badness 10000) in paragraph at lines 836--836 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 lis-ten- Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 ing_duration: Overfull \hbox (29.97432pt too wide) in paragraph at lines 836--836 \T1/ptm/m/it/10 gered_campaign_delay: Underfull \hbox (badness 10000) in paragraph at lines 836--836 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , Overfull \hbox (47.68343pt too wide) in paragraph at lines 836--836 \T1/ptm/m/it/10 check_eligibility_at_trigger: Overfull \hbox (9.71407pt too wide) in paragraph at lines 836--836 \T1/ptm/m/it/10 pire_recent_drugs: [13] [14] Underfull \hbox (badness 10000) in paragraph at lines 869--872 []\T1/pcr/b/n/10 diagnostic_type \T1/ptm/m/n/10 ^^U Type of malaria di-ag-nos-t ic used. De-fault is Underfull \hbox (badness 10000) in paragraph at lines 911--914 []\T1/ptm/m/n/10 In ga-me-to-cytes/microliter, use mea-sure- Underfull \hbox (badness 10000) in paragraph at lines 934--936 []\T1/pcr/b/n/10 measurement_sensitivity \T1/ptm/m/n/10 ^^U Set-ting for \T1/pt m/b/n/10 Mea-sure-ment_Sensitivity \T1/ptm/m/n/10 in [15] Underfull \hbox (badness 10000) in paragraph at lines 957--962 []\T1/pcr/b/n/10 IP_restrictions \T1/ptm/m/n/10 ^^U List of In-di-vid-u-al-Prop -erty key:value pairs that Underfull \hbox (badness 10000) in paragraph at lines 957--962 \T1/ptm/m/n/10 in-di-vid-u-als must have to re-ceive the di-ag-nos-tic in-ter-v en-tion. For Underfull \hbox (badness 10000) in paragraph at lines 957--962 \T1/ptm/m/n/10 ex-am-ple, \T1/pcr/m/n/10 [{"IndividualProperty1":"PropertyValue 1"}, Underfull \hbox (badness 10000) in paragraph at lines 964--969 []\T1/pcr/b/n/10 NP_restrictions \T1/ptm/m/n/10 ^^U List of Node-Prop-erty key: value pairs Underfull \hbox (badness 10000) in paragraph at lines 964--969 \T1/ptm/m/n/10 that nodes must have to re-ceive the di-ag-nos-tic in-ter-ven-ti on. Underfull \hbox (badness 10000) in paragraph at lines 964--969 \T1/ptm/m/n/10 For ex-am-ple, \T1/pcr/m/n/10 [{"NodeProperty1":"PropertyValue1" }, Underfull \hbox (badness 10000) in paragraph at lines 971--975 []\T1/pcr/b/n/10 disqualifying_properties \T1/ptm/m/n/10 ^^U List of In-di-vid- u-al-Prop-erty Underfull \hbox (badness 10000) in paragraph at lines 971--975 \T1/ptm/m/n/10 key:value pairs that cause an in-ter-ven-tion to be aborted. For ex- Underfull \hbox (badness 10000) in paragraph at lines 971--975 \T1/ptm/m/n/10 am-ple, \T1/pcr/m/n/10 [{"IndividualProperty1":"PropertyValue1"} , Underfull \hbox (badness 10000) in paragraph at lines 994--997 []\T1/pcr/b/n/10 expire_recent_drugs \T1/ptm/m/n/10 ^^U Adds \T1/pcr/m/n/10 [{" DrugStatus:None"}] \T1/ptm/m/n/10 to \T1/ptm/b/n/10 Prop- [16] Underfull \hbox (badness 10000) in paragraph at lines 1083--1083 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1083--1083 \T1/ptm/m/it/10 drug_code: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cam- Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 paign_type: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 MDA\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 6775) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_days: Overfull \hbox (19.21352pt too wide) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 tsteps_btwn_repetitions: Underfull \hbox (badness 7344) in paragraph at lines 1114--1114 [][]\T1/ptm/m/it/10 int[][] = 60\T1/ptm/m/n/10 , \T1/ptm/m/it/10 di-ag- Overfull \hbox (51.55446pt too wide) in paragraph at lines 1114--1114 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 BLOOD_SMEAR_PARASITES\TS1/ptm/m/it/10 '\T1/pt m/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 di-ag-nos- Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 = 40\T1/ptm/m/n/10 , \T1/ptm/m/it/10 mea-sure- Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 ment_sensitivity: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 [][]\T1/ptm/m/it/10 float[][] = 0.1\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 fmda_radius: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , Overfull \hbox (6.22408pt too wide) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 node_selection_type: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 DIS- Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 TANCE_ONLY\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 trig-ger_coverage: Underfull \hbox (badness 5667) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 balls: [][]int[][] = 0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 treat-ment_delay: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 trig- Overfull \hbox (17.97432pt too wide) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 gered_campaign_delay: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 tar-get_group: Overfull \hbox (33.88365pt too wide) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 drug_ineligibility_duration: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , Overfull \hbox (33.19351pt too wide) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Overfull \hbox (26.53346pt too wide) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 dis-qual-i-fy- Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 ing_properties: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 ger_condition_list: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 ten-ing_duration: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 ent_drug_configs: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 get_residents_only: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 [][]\T1/ptm/m/it/10 int[][] = 1\T1/ptm/m/n/10 , Overfull \hbox (35.68343pt too wide) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 check_eligibility_at_trigger: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 [][]\T1/ptm/m/it/10 bool[][] = Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 False\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-ceiv- Overfull \hbox (144.47322pt too wide) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 ing_drugs_event_name=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Received _Campaign_Drugs\TS1/ptm/m/it/10 '\T1/pcr/m/n/10 ) [17] [18] [19] Underfull \hbox (badness 10000) in paragraph at lines 1265--1268 []\T1/pcr/b/n/10 ind_property_restrictions \T1/ptm/m/n/10 ^^U The set-ting for \T1/ptm/b/n/10 Prop- Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_days: [][]list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age: [][]float[][] = Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 drug_configs: [][]list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-ceiv-ing_drugs_event: Overfull \hbox (57.71327pt too wide) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 emod_api.interventions.common.BroadcastEvent Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 rep-e-ti-tions: [][]int[ ][] = Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tsteps_btwn_repetitions: Underfull \hbox (badness 6348) in paragraph at lines 1310--1310 [][]\T1/ptm/m/it/10 int[][] = 60\T1/ptm/m/n/10 , \T1/ptm/m/it/10 node_ids: [][] list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ex-pire_recent_drugs: Overfull \hbox (86.50304pt too wide) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 emod_api.interventions.common.PropertyValueChanger Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 6032) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 dis-qual-i- fy- Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 ing_properties: [][]list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 trig-ger_condition_list: [][]list[][] = [20] Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_days: [][]list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age: [][]float[][] = Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 \T1/ptm/m/it/10 1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 drug_configs: [][]list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-ceiv-ing_drugs_event: Overfull \hbox (63.71327pt too wide) in paragraph at lines 1325--1325 \T1/ptm/m/it/10 emod_api.interventions.common.BroadcastEvent Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 \T1/ptm/m/it/10 tsteps_btwn_repetitions: [][]int[][] Underfull \hbox (badness 7504) in paragraph at lines 1325--1325 \T1/ptm/m/it/10 = 60\T1/ptm/m/n/10 , \T1/ptm/m/it/10 treat-ment_delay: [][]int[ ][] Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 BLOOD_SMEAR_PARASITES\TS1/ptm/m/it/10 '\T1/pt m/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 \T1/ptm/m/it/10 40\T1/ptm/m/n/10 , \T1/ptm/m/it/10 mea-sure-ment_sensitivity: Underfull \hbox (badness 6063) in paragraph at lines 1325--1325 [][]\T1/ptm/m/it/10 float[][] = 0.1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 node_ids: [ ][]list[][] Overfull \hbox (92.50304pt too wide) in paragraph at lines 1325--1325 \T1/ptm/m/it/10 emod_api.interventions.common.PropertyValueChanger Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar-get_gro up: Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 \T1/ptm/m/it/10 any = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Ev-ery-one\TS1/ptm/m/it /10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 trig- Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 \T1/ptm/m/it/10 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 check_eligibility_at_trigger: Underfull \hbox (badness 10000) in paragraph at lines 1326--1329 \T1/ptm/m/n/10 Add an MSAT (mass screen-ing and treat-ment) drug in-ter-ven-tio n to your cam-paign. See [21] Underfull \hbox (badness 10000) in paragraph at lines 1340--1340 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_days: [][]list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1340--1340 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 trig-ger_coverage: Underfull \hbox (badness 7221) in paragraph at lines 1340--1340 [][]\T1/ptm/m/it/10 float[][] = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age: [ ][]float[][] Underfull \hbox (badness 7595) in paragraph at lines 1340--1340 \T1/ptm/m/it/10 = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 drug_configs: [][]list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1340--1340 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-ceiv-ing_drugs_event: Overfull \hbox (63.71327pt too wide) in paragraph at lines 1340--1340 \T1/ptm/m/it/10 emod_api.interventions.common.BroadcastEvent Underfull \hbox (badness 10000) in paragraph at lines 1340--1340 \T1/ptm/m/it/10 tsteps_btwn_repetitions: [][]int[][] Underfull \hbox (badness 10000) in paragraph at lines 1340--1340 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 BLOOD_SMEAR_PARASITES\TS1/ptm/m/it/10 '\T1/pt m/m/n/10 , Overfull \hbox (92.50304pt too wide) in paragraph at lines 1340--1340 \T1/ptm/m/it/10 emod_api.interventions.common.PropertyValueChanger Underfull \hbox (badness 10000) in paragraph at lines 1340--1340 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1340--1340 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1340--1340 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1340--1340 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar-get_gro up: Underfull \hbox (badness 10000) in paragraph at lines 1340--1340 \T1/ptm/m/it/10 any = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Ev-ery-one\TS1/ptm/m/it /10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 trig- Underfull \hbox (badness 7869) in paragraph at lines 1341--1344 \T1/ptm/m/n/10 Add an fMDA (fo-cal mass drug ad-min-is-tra-tion) drug in-ter-ve n-tion to your cam-paign. See Underfull \hbox (badness 10000) in paragraph at lines 1355--1355 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day: [][]int[][] = Underfull \hbox (badness 6141) in paragraph at lines 1355--1355 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age: [][]float[][] = 1 \T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1355--1355 \T1/ptm/m/it/10 re-ceiv-ing_drugs_event: Overfull \hbox (75.71327pt too wide) in paragraph at lines 1355--1355 \T1/ptm/m/it/10 emod_api.interventions.common.BroadcastEvent Overfull \hbox (9.55446pt too wide) in paragraph at lines 1355--1355 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 BLOOD_SMEAR_PARASITES\TS1/ptm/m/it/10 '\T1/pt m/m/n/10 , Overfull \hbox (104.50304pt too wide) in paragraph at lines 1355--1355 \T1/ptm/m/it/10 emod_api.interventions.common.PropertyValueChanger Underfull \hbox (badness 10000) in paragraph at lines 1355--1355 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1355--1355 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1355--1355 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1355--1355 \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1355--1355 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 dis-qual-i- fy- [22] Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day: [][]int[][] = Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age: [][]float[][] = 1 \T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 \T1/ptm/m/it/10 re-ceiv-ing_drugs_event: Overfull \hbox (69.71327pt too wide) in paragraph at lines 1370--1370 \T1/ptm/m/it/10 emod_api.interventions.common.BroadcastEvent Underfull \hbox (badness 7613) in paragraph at lines 1370--1370 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lis-ten-ing_duration: Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 trig-ger_covera ge: Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 \T1/ptm/m/it/10 = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 node_selection_type: Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 DIS-TANCE_ONLY\ TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 \T1/ptm/m/it/10 node_ids: [][]list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 \T1/ptm/m/it/10 ex-pire_recent_drugs: Overfull \hbox (98.50304pt too wide) in paragraph at lines 1370--1370 \T1/ptm/m/it/10 emod_api.interventions.common.PropertyValueChanger Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 dis-qual-i- fy- Underfull \hbox (badness 10000) in paragraph at lines 1385--1385 \T1/ptm/m/it/10 TANCE_ONLY\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ev ent_trigger: [23] Underfull \hbox (badness 5091) in paragraph at lines 1448--1448 [][]\T1/ptm/m/it/10 int[][] = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 node_ids: [][]l ist[][] = None\T1/ptm/m/n/10 , [24] Underfull \hbox (badness 10000) in paragraph at lines 1485--1485 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1485--1485 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 5274) in paragraph at lines 1521--1521 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er- Underfull \hbox (badness 10000) in paragraph at lines 1521--1521 \T1/ptm/m/it/10 killing_eff=1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in- Underfull \hbox (badness 10000) in paragraph at lines 1521--1521 \T1/ptm/m/it/10 sec-ti-cide=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1542--1542 []\T1/ptm/m/it/10 schema_path_container\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1542--1542 [][]\T1/ptm/m/it/10 float[][] = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-mo- Underfull \hbox (badness 10000) in paragraph at lines 1542--1542 \T1/ptm/m/it/10 killing_exponential_decay_rate: [25] Underfull \hbox (badness 10000) in paragraph at lines 1585--1585 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1585--1585 \T1/ptm/m/it/10 re-leased_number: Underfull \hbox (badness 5954) in paragraph at lines 1585--1585 [][]\T1/ptm/m/it/10 int[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 1585--1585 \T1/ptm/m/it/10 leased_fraction: Underfull \hbox (badness 10000) in paragraph at lines 1585--1585 \T1/ptm/m/it/10 leased_infectious: Underfull \hbox (badness 10000) in paragraph at lines 1585--1585 [][]\T1/ptm/m/it/10 float[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 1585--1585 \T1/ptm/m/it/10 leased_species: Underfull \hbox (badness 10000) in paragraph at lines 1585--1585 \T1/ptm/m/it/10 re-leased_genome: Underfull \hbox (badness 10000) in paragraph at lines 1585--1585 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1605--1607 []\T1/pcr/b/n/10 released_infectious \T1/ptm/m/n/10 ^^U The frac-tion of vec-to rs re-leased that Underfull \hbox (badness 10000) in paragraph at lines 1605--1607 \T1/ptm/m/n/10 are to be in-fec-tious. One can only use this fea-ture when Overfull \hbox (16.27205pt too wide) in paragraph at lines 1605--1607 \T1/ptm/m/n/10 `Malaria_Model'!='MALARIA_MECHANISTIC_MODEL_WITH_PARASITE_GENETI CS' Underfull \hbox (badness 10000) in paragraph at lines 1631--1631 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Overfull \hbox (16.35448pt too wide) in paragraph at lines 1631--1631 \T1/ptm/m/it/10 start_day: Underfull \hbox (badness 10000) in paragraph at lines 1631--1631 [][]\T1/ptm/m/it/10 int[][] Underfull \hbox (badness 10000) in paragraph at lines 1631--1631 \T1/ptm/m/it/10 = 1\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1631--1631 \T1/ptm/m/it/10 file- Overfull \hbox (2.35487pt too wide) in paragraph at lines 1631--1631 \T1/ptm/m/it/10 None\T1/pcr/m/n/10 ) [26] Underfull \hbox (badness 10000) in paragraph at lines 1657--1657 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1657--1657 \T1/ptm/m/it/10 start_day: [][]int[][] Underfull \hbox (badness 10000) in paragraph at lines 1657--1657 \T1/ptm/m/it/10 = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-mo- Overfull \hbox (2.73457pt too wide) in paragraph at lines 1657--1657 \T1/ptm/m/it/10 graphic_coverage: Overfull \hbox (14.36418pt too wide) in paragraph at lines 1657--1657 \T1/ptm/m/it/10 get_num_individuals: Underfull \hbox (badness 10000) in paragraph at lines 1657--1657 [][]\T1/ptm/m/it/10 int[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1657--1657 \T1/ptm/m/it/10 node_ids: [][]list[][] Overfull \hbox (52.97314pt too wide) in paragraph at lines 1657--1657 \T1/ptm/m/it/10 timesteps_between_repetitions: Underfull \hbox (badness 10000) in paragraph at lines 1657--1657 [][]\T1/ptm/m/it/10 int[][] = 365\T1/ptm/m/n/10 , Overfull \hbox (32.53346pt too wide) in paragraph at lines 1657--1657 \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1657--1657 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Overfull \hbox (39.19351pt too wide) in paragraph at lines 1657--1657 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1657--1657 \T1/ptm/m/it/10 get_age_min: Underfull \hbox (badness 10000) in paragraph at lines 1657--1657 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar- Underfull \hbox (badness 10000) in paragraph at lines 1657--1657 \T1/ptm/m/it/10 get_age_max: Underfull \hbox (badness 10000) in paragraph at lines 1657--1657 \T1/ptm/m/it/10 get_gender: Underfull \hbox (badness 5359) in paragraph at lines 1657--1657 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 All\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ig- Underfull \hbox (badness 10000) in paragraph at lines 1657--1657 \T1/ptm/m/it/10 nore_immunity: Underfull \hbox (badness 10000) in paragraph at lines 1657--1657 [][]\T1/ptm/m/it/10 bool[][] = True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1657--1657 \T1/ptm/m/it/10 in-cu-ba- Overfull \hbox (16.02399pt too wide) in paragraph at lines 1657--1657 \T1/ptm/m/it/10 tion_period_override: [27] Underfull \hbox (badness 5893) in paragraph at lines 1681--1683 []\T1/pcr/b/n/10 repetitions \T1/ptm/m/n/10 ^^U The num-ber of times an in-ter- ven-tion is given, used with Overfull \hbox (5.18481pt too wide) in paragraph at lines 1733--1733 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , Overfull \hbox (4.35448pt too wide) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 start_day: Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 de-mo- Overfull \hbox (38.73457pt too wide) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 graphic_coverage: Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 [][]\T1/ptm/m/it/10 float[][] = Overfull \hbox (50.36418pt too wide) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 get_num_individuals: Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 [][]\T1/ptm/m/it/10 int[][] = Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (2.6847pt too wide) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 node_ids: Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 rep-e-ti- Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 tions: Overfull \hbox (88.97314pt too wide) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 timesteps_between_repetitions: Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 [][]\T1/ptm/m/it/10 int[][] Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 = 365\T1/ptm/m/n/10 , Overfull \hbox (68.53346pt too wide) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (75.19351pt too wide) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 tar- Overfull \hbox (17.93463pt too wide) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 get_age_min: Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 [][]\T1/ptm/m/it/10 int[][] = Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar- Overfull \hbox (19.59468pt too wide) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 get_age_max: Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 [][]\T1/ptm/m/it/10 int[][] = Overfull \hbox (11.3646pt too wide) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 get_gender: Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 [][]\T1/ptm/m/it/10 str[][] = Overfull \hbox (26.75435pt too wide) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 nore_immunity: Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 [][]\T1/ptm/m/it/10 bool[][] = Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 in-cu-ba- Overfull \hbox (52.02399pt too wide) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 tion_period_override: Underfull \hbox (badness 5077) in paragraph at lines 1733--1733 [][]\T1/ptm/m/it/10 int[][] = - Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cre- Overfull \hbox (90.54375pt too wide) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 ate_nucleotide_sequence_from: Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 [][]\T1/ptm/m/it/10 str[][] = Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 BAR- Overfull \hbox (33.99452pt too wide) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 CODE_STRING\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 bar- Overfull \hbox (13.79442pt too wide) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 code_string: Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 [][]\T1/ptm/m/it/10 str[][] = Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (52.88371pt too wide) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 drug_resistant_string: Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 [][]\T1/ptm/m/it/10 str[][] = Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (43.23422pt too wide) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 msp_variant_value: Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 [][]\T1/ptm/m/it/10 int[][] = Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (64.34395pt too wide) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 pfemp1_variants_values: Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 bar- Overfull \hbox (155.51305pt too wide) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 code_allele_frequencies_per_genome_location: Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (194.60234pt too wide) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 drug_resistant_allele_frequencies_per_genome_location: Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 [][]\T1/ptm/m/it/10 list[][] = [28] Overfull \vbox (135.66997pt too high) has occurred while \output is active [29] Underfull \hbox (badness 5893) in paragraph at lines 1760--1762 []\T1/pcr/b/n/10 repetitions \T1/ptm/m/n/10 ^^U The num-ber of times an in-ter- ven-tion is given, used with [30] Overfull \hbox (11.18481pt too wide) in paragraph at lines 1849--1849 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , Overfull \hbox (10.35448pt too wide) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 start_day: Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 de-mo- Overfull \hbox (44.73457pt too wide) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 graphic_coverage: Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 [][]\T1/ptm/m/it/10 float[][] Underfull \hbox (badness 8151) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 = 1.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 tar- Overfull \hbox (56.36418pt too wide) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 get_num_individuals: Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 [][]\T1/ptm/m/it/10 int[][] = Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (8.6847pt too wide) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 node_ids: Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 rep-e-ti- Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 tions: Overfull \hbox (94.97314pt too wide) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 timesteps_between_repetitions: Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 [][]\T1/ptm/m/it/10 int[][] = Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 365\T1/ptm/m/n/10 , Overfull \hbox (74.53346pt too wide) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (81.19351pt too wide) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 tar- Overfull \hbox (23.93463pt too wide) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 get_age_min: Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 [][]\T1/ptm/m/it/10 int[][] = Overfull \hbox (25.59468pt too wide) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 get_age_max: Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 [][]\T1/ptm/m/it/10 int[][] = Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 125\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 tar- Overfull \hbox (17.3646pt too wide) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 get_gender: Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 [][]\T1/ptm/m/it/10 str[][] = Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 All\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 ig- Overfull \hbox (32.75435pt too wide) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 nore_immunity: Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 in-cu-ba- Overfull \hbox (58.02399pt too wide) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 tion_period_override: Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 [][]\T1/ptm/m/it/10 int[][] = Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 - 1\T1/ptm/m/n/10 , Overfull \hbox (10.34447pt too wide) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 irbc_type: Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 mi- Overfull \hbox (42.5643pt too wide) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 nor_epitope_type: Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (10.3446pt too wide) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 msp_type: Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 [][]\T1/ptm/m/it/10 int[][] = [31] Overfull \vbox (3.66997pt too high) has occurred while \output is active [32] Underfull \hbox (badness 5893) in paragraph at lines 1876--1878 []\T1/pcr/b/n/10 repetitions \T1/ptm/m/n/10 ^^U The num-ber of times an in-ter- ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 1934--1934 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day: Underfull \hbox (badness 10000) in paragraph at lines 1934--1934 [][]\T1/ptm/m/it/10 int[][] = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-mo- Underfull \hbox (badness 10000) in paragraph at lines 1934--1934 \T1/ptm/m/it/10 graphic_coverage: Underfull \hbox (badness 10000) in paragraph at lines 1934--1934 [][]\T1/ptm/m/it/10 float[][] = 1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar- Underfull \hbox (badness 10000) in paragraph at lines 1934--1934 \T1/ptm/m/it/10 get_num_individuals: Underfull \hbox (badness 10000) in paragraph at lines 1934--1934 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 rep-e- Underfull \hbox (badness 10000) in paragraph at lines 1934--1934 \T1/ptm/m/it/10 ti-tions: [][]int[][] = 1\T1/ptm/m/n/10 , Overfull \hbox (22.97314pt too wide) in paragraph at lines 1934--1934 \T1/ptm/m/it/10 timesteps_between_repetitions: Underfull \hbox (badness 10000) in paragraph at lines 1934--1934 [][]\T1/ptm/m/it/10 int[][] = 365\T1/ptm/m/n/10 , Overfull \hbox (2.53346pt too wide) in paragraph at lines 1934--1934 \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1934--1934 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Overfull \hbox (9.19351pt too wide) in paragraph at lines 1934--1934 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1934--1934 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar- Underfull \hbox (badness 10000) in paragraph at lines 1934--1934 \T1/ptm/m/it/10 get_age_min: [][]int[][] = [33] Underfull \hbox (badness 5893) in paragraph at lines 1960--1962 []\T1/pcr/b/n/10 repetitions \T1/ptm/m/n/10 ^^U The num-ber of times an in-ter- ven-tion is given, used with [34] Underfull \hbox (badness 10000) in paragraph at lines 2001--2001 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2001--2001 \T1/ptm/m/it/10 cide_name: Overfull \hbox (29.51352pt too wide) in paragraph at lines 2001--2001 \T1/ptm/m/it/10 killing_initial_effect: Underfull \hbox (badness 10000) in paragraph at lines 2001--2001 [][]\T1/ptm/m/it/10 float[][] = 1\T1/ptm/m/n/10 , Overfull \hbox (32.87419pt too wide) in paragraph at lines 2001--2001 \T1/ptm/m/it/10 killing_box_duration: Underfull \hbox (badness 10000) in paragraph at lines 2001--2001 [][]\T1/ptm/m/it/10 int[][] = 365\T1/ptm/m/n/10 , Overfull \hbox (74.87367pt too wide) in paragraph at lines 2001--2001 \T1/ptm/m/it/10 killing_exponential_decay_rate: Underfull \hbox (badness 10000) in paragraph at lines 2001--2001 [][]\T1/ptm/m/it/10 float[][] = 0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2043--2043 \T1/ptm/m/it/10 = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 spray_coverage: [35] Overfull \hbox (5.18481pt too wide) in paragraph at lines 2068--2068 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , Overfull \hbox (4.35448pt too wide) in paragraph at lines 2068--2068 \T1/ptm/m/it/10 start_day: Underfull \hbox (badness 10000) in paragraph at lines 2068--2068 \T1/ptm/m/it/10 file- Underfull \hbox (badness 10000) in paragraph at lines 2068--2068 \T1/ptm/m/it/10 name: Underfull \hbox (badness 10000) in paragraph at lines 2068--2068 [][]\T1/ptm/m/it/10 str[][] = Underfull \hbox (badness 6893) in paragraph at lines 2085--2085 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day: [][]int[] [] = 0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2129--2129 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , [36] Underfull \hbox (badness 10000) in paragraph at lines 2149--2149 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Overfull \hbox (10.35448pt too wide) in paragraph at lines 2149--2149 \T1/ptm/m/it/10 start_day: Underfull \hbox (badness 10000) in paragraph at lines 2149--2149 \T1/ptm/m/it/10 tar-gets: Underfull \hbox (badness 10000) in paragraph at lines 2149--2149 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2149--2149 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2149--2149 \T1/ptm/m/it/10 drug: Underfull \hbox (badness 10000) in paragraph at lines 2149--2149 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2149--2149 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (8.6847pt too wide) in paragraph at lines 2149--2149 \T1/ptm/m/it/10 node_ids: Underfull \hbox (badness 10000) in paragraph at lines 2149--2149 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2149--2149 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (74.53346pt too wide) in paragraph at lines 2149--2149 \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 2149--2149 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2149--2149 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (81.88365pt too wide) in paragraph at lines 2149--2149 \T1/ptm/m/it/10 drug_ineligibility_duration: Underfull \hbox (badness 6204) in paragraph at lines 2149--2149 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 du- Underfull \hbox (badness 10000) in paragraph at lines 2149--2149 \T1/ptm/m/it/10 ra-tion: Underfull \hbox (badness 10000) in paragraph at lines 2149--2149 [][]\T1/ptm/m/it/10 int[][] = Underfull \hbox (badness 10000) in paragraph at lines 2149--2149 \T1/ptm/m/it/10 - 1\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2149--2149 \T1/ptm/m/it/10 broad- Overfull \hbox (41.29442pt too wide) in paragraph at lines 2149--2149 \T1/ptm/m/it/10 cast_event_name: Underfull \hbox (badness 10000) in paragraph at lines 2149--2149 [][]\T1/ptm/m/it/10 str[][] = Underfull \hbox (badness 10000) in paragraph at lines 2149--2149 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Re- Overfull \hbox (18.86435pt too wide) in paragraph at lines 2149--2149 \T1/ptm/m/it/10 ceivedTreat- Underfull \hbox (badness 10000) in paragraph at lines 2165--2169 []\T1/pcr/b/n/10 of individuals to target with the intervention. Default is Underfull \hbox (badness 10000) in paragraph at lines 2165--2169 \T1/ptm/m/n/10 (\T1/pcr/m/sl/10 properties\T1/ptm/m/n/10 ) ^^U \T1/pcr/m/n/10 [ { "trigger":"NewClinicalCase","coverage":0. Underfull \hbox (badness 10000) in paragraph at lines 2165--2169 \T1/pcr/m/n/10 8,"agemin":15,"agemax":70, "seek":0.4,"rate":0.3}, Underfull \hbox (badness 10000) in paragraph at lines 2165--2169 \T1/pcr/m/n/10 {"trigger":"NewSevereCase","coverage":0.8,"seek":0.6, Underfull \hbox (badness 10000) in paragraph at lines 2183--2184 []\T1/pcr/b/n/10 must have to receive the intervention. For example, Underfull \hbox (badness 10000) in paragraph at lines 2183--2184 \T1/ptm/m/n/10 (\T1/pcr/m/sl/10 individuals\T1/ptm/m/n/10 ) ^^U \T1/pcr/m/n/10 ["IndividualProperty1:PropertyValue1", [37] Underfull \hbox (badness 10000) in paragraph at lines 2213--2213 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day: [][]int[][] = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 dis- Underfull \hbox (badness 10000) in paragraph at lines 2213--2213 \T1/ptm/m/it/10 0.0013698630136986301\T1/ptm/m/n/10 , \T1/ptm/m/it/10 killing_e ff: Underfull \hbox (badness 10000) in paragraph at lines 2213--2213 \T1/ptm/m/it/10 0.0006849315068493151\T1/ptm/m/n/10 , \T1/ptm/m/it/10 iv_name: Underfull \hbox (badness 10000) in paragraph at lines 2213--2213 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Us-ageDe-pen-de ntBed-net\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2213--2213 \T1/ptm/m/it/10 sonal_dependence: [][]dict[][] = None\T1/ptm/m/n/10 , [38] [39] Underfull \hbox (badness 10000) in paragraph at lines 2412--2412 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2412--2412 \T1/ptm/m/it/10 start_day\T1/ptm/m/n/10 , \T1/ptm/m/it/10 file- [40] Underfull \hbox (badness 10000) in paragraph at lines 2427--2427 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2427--2427 \T1/ptm/m/it/10 start_day: [][]int[][] = Underfull \hbox (badness 10000) in paragraph at lines 2427--2427 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 du-ra-tion_days: Underfull \hbox (badness 10000) in paragraph at lines 2427--2427 [][]\T1/ptm/m/it/10 int[][] = 365000\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2427--2427 \T1/ptm/m/it/10 clude_vector_state: Underfull \hbox (badness 10000) in paragraph at lines 2427--2427 [][]\T1/ptm/m/it/10 int[][] = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 strat- Underfull \hbox (badness 10000) in paragraph at lines 2427--2427 \T1/ptm/m/it/10 ify_by: [][]str[][] = Underfull \hbox (badness 10000) in paragraph at lines 2427--2427 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 GENOME\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ ptm/m/it/10 com- Overfull \hbox (9.02399pt too wide) in paragraph at lines 2427--2427 \T1/ptm/m/it/10 bine_similar_genomes: Underfull \hbox (badness 10000) in paragraph at lines 2427--2427 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 spe- Overfull \hbox (102.76315pt too wide) in paragraph at lines 2427--2427 \T1/ptm/m/it/10 cific_genome_combinations_for_stratification: Underfull \hbox (badness 10000) in paragraph at lines 2427--2427 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 al- Overfull \hbox (64.54318pt too wide) in paragraph at lines 2427--2427 \T1/ptm/m/it/10 lele_combinations_for_stratification: Overfull \hbox (2.32376pt too wide) in paragraph at lines 2427--2427 \T1/ptm/m/it/10 les_for_stratification: Underfull \hbox (badness 10000) in paragraph at lines 2427--2427 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- [41] Underfull \hbox (badness 10000) in paragraph at lines 2507--2507 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2526--2526 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 6893) in paragraph at lines 2526--2526 \T1/ptm/m/it/10 = 365000\T1/ptm/m/n/10 , \T1/ptm/m/it/10 nodes: Underfull \hbox (badness 10000) in paragraph at lines 2526--2526 \T1/ptm/m/it/10 ual_property_filter: Underfull \hbox (badness 10000) in paragraph at lines 2526--2526 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , \T1/ptm/m/it/ 10 in-fec- Underfull \hbox (badness 10000) in paragraph at lines 2526--2526 \T1/ptm/m/it/10 tious-ness_bins: Underfull \hbox (badness 10000) in paragraph at lines 2526--2526 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Overfull \hbox (4.30418pt too wide) in paragraph at lines 2526--2526 \T1/ptm/m/it/10 max_number_reports: Underfull \hbox (badness 7291) in paragraph at lines 2526--2526 [][]\T1/ptm/m/it/10 int[][] = 100\T1/ptm/m/n/10 , \T1/ptm/m/it/10 par-a- Underfull \hbox (badness 10000) in paragraph at lines 2526--2526 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- [42] Underfull \hbox (badness 10000) in paragraph at lines 2587--2587 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i- Underfull \hbox (badness 10000) in paragraph at lines 2603--2603 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2603--2603 \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2603--2603 \T1/ptm/m/it/10 start_day: Underfull \hbox (badness 10000) in paragraph at lines 2603--2603 \T1/ptm/m/it/10 ra-tion_days: Underfull \hbox (badness 10000) in paragraph at lines 2603--2603 \T1/ptm/m/it/10 nodes: Overfull \hbox (3.20416pt too wide) in paragraph at lines 2603--2603 \T1/ptm/m/it/10 pretty_format: Overfull \hbox (15.2441pt too wide) in paragraph at lines 2603--2603 \T1/ptm/m/it/10 port_description: [43] Underfull \hbox (badness 10000) in paragraph at lines 2643--2643 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2643--2643 \T1/ptm/m/it/10 man- Underfull \hbox (badness 10000) in paragraph at lines 2643--2643 \T1/ptm/m/it/10 i-fest\T1/ptm/m/n/10 , Overfull \hbox (10.35448pt too wide) in paragraph at lines 2643--2643 \T1/ptm/m/it/10 start_day: Overfull \hbox (6.45485pt too wide) in paragraph at lines 2643--2643 \T1/ptm/m/it/10 end_day: Underfull \hbox (badness 10000) in paragraph at lines 2643--2643 [][]\T1/ptm/m/it/10 int[][] = Overfull \hbox (1.74501pt too wide) in paragraph at lines 2643--2643 \T1/ptm/m/it/10 365000\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2643--2643 \T1/ptm/m/it/10 re-port- Overfull \hbox (21.46431pt too wide) in paragraph at lines 2643--2643 \T1/ptm/m/it/10 ing_interval: Underfull \hbox (badness 10000) in paragraph at lines 2643--2643 [][]\T1/ptm/m/it/10 int[][] = Overfull \hbox (1.74501pt too wide) in paragraph at lines 2643--2643 \T1/ptm/m/it/10 365000\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2643--2643 \T1/ptm/m/it/10 nodes: Underfull \hbox (badness 10000) in paragraph at lines 2643--2643 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2643--2643 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2643--2643 \T1/ptm/m/it/10 re- Overfull \hbox (28.1245pt too wide) in paragraph at lines 2643--2643 \T1/ptm/m/it/10 port_filename: Underfull \hbox (badness 10000) in paragraph at lines 2643--2643 [][]\T1/ptm/m/it/10 str[][] = Underfull \hbox (badness 10000) in paragraph at lines 2643--2643 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Spa- Underfull \hbox (badness 10000) in paragraph at lines 2643--2643 \T1/ptm/m/it/10 tial-Re- Underfull \hbox (badness 10000) in paragraph at lines 2643--2643 \T1/ptm/m/it/10 port- Underfull \hbox (badness 10000) in paragraph at lines 2643--2643 \T1/ptm/m/it/10 Malar- Underfull \hbox (badness 10000) in paragraph at lines 2643--2643 \T1/ptm/m/it/10 i-aFil- Overfull \hbox (13.23434pt too wide) in paragraph at lines 2643--2643 \T1/ptm/m/it/10 tered.json\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2643--2643 \T1/ptm/m/it/10 spa- Overfull \hbox (56.87419pt too wide) in paragraph at lines 2643--2643 \T1/ptm/m/it/10 tial_output_channels: Underfull \hbox (badness 10000) in paragraph at lines 2643--2643 [][]\T1/ptm/m/it/10 list[][] = [44] Underfull \hbox (badness 10000) in paragraph at lines 2671--2679 \T1/ptm/m/n/10 ^^PBlood_Smear_Gametocyte_Prevalence^^Q, ^^PBlood_Smear_Parasite _Prevalence^^Q, Underfull \hbox (badness 10000) in paragraph at lines 2671--2679 \T1/ptm/m/n/10 ^^PCam-paign_Cost^^Q, ^^PDaily_Bites_Per_Human^^Q, ^^PDaily_EIR^ ^Q, ^^PDis-ease_Deaths^^Q, Underfull \hbox (badness 10000) in paragraph at lines 2671--2679 \T1/ptm/m/n/10 ^^PNew_Reported_Infections^^Q, ^^PNew_Severe_Cases^^Q, ^^PPCR_Ga metocyte_Prevalence^^Q, Underfull \hbox (badness 10000) in paragraph at lines 2671--2679 \T1/ptm/m/n/10 ^^PPCR_Parasite_Prevalence^^Q, ^^PPfHRP2_Prevalence^^Q, ^^PPop-u -la-tion^^Q, ^^PPreva- Underfull \hbox (badness 10000) in paragraph at lines 2671--2679 \T1/ptm/m/n/10 lence^^Q, ^^PRain-fall^^Q, ^^PRel-a-tive_Humidity^^Q, ^^PTrue_Pr evalence^^Q De-faults: Underfull \hbox (badness 10000) in paragraph at lines 2692--2692 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2692--2692 \T1/ptm/m/it/10 start_day: [][]int[][] = Underfull \hbox (badness 10000) in paragraph at lines 2692--2692 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 du-ra-tion_days: Underfull \hbox (badness 10000) in paragraph at lines 2692--2692 [][]\T1/ptm/m/it/10 int[][] = 365000\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2692--2692 \T1/ptm/m/it/10 event_trigger_list: Underfull \hbox (badness 6893) in paragraph at lines 2692--2692 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 nodes: Underfull \hbox (badness 10000) in paragraph at lines 2692--2692 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 2692--2692 \T1/ptm/m/it/10 port_description: Underfull \hbox (badness 10000) in paragraph at lines 2713--2713 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 end_day: Underfull \hbox (badness 10000) in paragraph at lines 2713--2713 [][]\T1/ptm/m/it/10 int[][] = 365000\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in- Underfull \hbox (badness 10000) in paragraph at lines 2713--2713 \T1/ptm/m/it/10 clude_infection_table: Underfull \hbox (badness 10000) in paragraph at lines 2713--2713 [][]\T1/ptm/m/it/10 int[][] = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in- [45] Underfull \hbox (badness 10000) in paragraph at lines 2775--2775 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 7168) in paragraph at lines 2775--2775 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 du-ra-tion_days: Underfull \hbox (badness 10000) in paragraph at lines 2775--2775 [][]\T1/ptm/m/it/10 int[][] = 365000\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2775--2775 \T1/ptm/m/it/10 re-port-ing_interval: Underfull \hbox (badness 10000) in paragraph at lines 2775--2775 [][]\T1/ptm/m/it/10 int[][] = 365000\T1/ptm/m/n/10 , Overfull \hbox (10.30418pt too wide) in paragraph at lines 2775--2775 \T1/ptm/m/it/10 max_number_reports: Underfull \hbox (badness 10000) in paragraph at lines 2775--2775 [][]\T1/ptm/m/it/10 int[][] = 365000\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2775--2775 \T1/ptm/m/it/10 nodes: [][]list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2775--2775 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 age_bins: Underfull \hbox (badness 10000) in paragraph at lines 2775--2775 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2775--2775 \T1/ptm/m/it/10 pretty_format: Underfull \hbox (badness 10000) in paragraph at lines 2775--2775 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 2775--2775 \T1/ptm/m/it/10 port_description: [46] Underfull \hbox (badness 10000) in paragraph at lines 2825--2825 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 7168) in paragraph at lines 2825--2825 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 du-ra-tion_days: Underfull \hbox (badness 10000) in paragraph at lines 2825--2825 [][]\T1/ptm/m/it/10 int[][] = 365000\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2825--2825 \T1/ptm/m/it/10 event_trigger_list: Underfull \hbox (badness 10000) in paragraph at lines 2825--2825 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Overfull \hbox (10.30418pt too wide) in paragraph at lines 2825--2825 \T1/ptm/m/it/10 max_number_reports: Underfull \hbox (badness 10000) in paragraph at lines 2825--2825 [][]\T1/ptm/m/it/10 int[][] = 365000\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2825--2825 \T1/ptm/m/it/10 nodes: [][]list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2825--2825 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in-di-vid- Overfull \hbox (20.78384pt too wide) in paragraph at lines 2825--2825 \T1/ptm/m/it/10 ual_property_to_collect: Underfull \hbox (badness 10000) in paragraph at lines 2825--2825 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2825--2825 \T1/ptm/m/it/10 pretty_format: Underfull \hbox (badness 10000) in paragraph at lines 2825--2825 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 2825--2825 \T1/ptm/m/it/10 port_description: [47] Underfull \hbox (badness 10000) in paragraph at lines 2926--2926 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2926--2926 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in-di-vid- Overfull \hbox (26.78384pt too wide) in paragraph at lines 2926--2926 \T1/ptm/m/it/10 ual_property_to_collect: Underfull \hbox (badness 6526) in paragraph at lines 2926--2926 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , \T1/ptm/m/it/ 10 strat- Underfull \hbox (badness 10000) in paragraph at lines 2926--2926 \T1/ptm/m/it/10 ify_by_gender: Overfull \hbox (47.85474pt too wide) in paragraph at lines 2960--2960 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , Overfull \hbox (49.79494pt too wide) in paragraph at lines 2960--2960 \T1/ptm/m/it/10 man- Overfull \hbox (35.35486pt too wide) in paragraph at lines 2960--2960 \T1/ptm/m/it/10 i- Overfull \hbox (45.63463pt too wide) in paragraph at lines 2960--2960 \T1/ptm/m/it/10 fest\T1/ptm/m/n/10 , Overfull \hbox (46.26491pt too wide) in paragraph at lines 2960--2960 \T1/ptm/m/it/10 bar- Overfull \hbox (55.34474pt too wide) in paragraph at lines 2960--2960 \T1/ptm/m/it/10 codes: Overfull \hbox (41.47458pt too wide) in paragraph at lines 2960--2960 [][]\T1/ptm/m/it/10 list[][] Overfull \hbox (35.99501pt too wide) in paragraph at lines 2960--2960 \T1/ptm/m/it/10 = Overfull \hbox (52.85487pt too wide) in paragraph at lines 2960--2960 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (122.7736pt too wide) in paragraph at lines 2960--2960 \T1/ptm/m/it/10 drug_resistant_strings: Overfull \hbox (41.47458pt too wide) in paragraph at lines 2960--2960 [][]\T1/ptm/m/it/10 list[][] Overfull \hbox (35.99501pt too wide) in paragraph at lines 2960--2960 \T1/ptm/m/it/10 = Overfull \hbox (52.85487pt too wide) in paragraph at lines 2960--2960 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (148.3231pt too wide) in paragraph at lines 2960--2960 \T1/ptm/m/it/10 drug_resistant_statistic_type: Overfull \hbox (39.80469pt too wide) in paragraph at lines 2960--2960 [][]\T1/ptm/m/it/10 str[][] Overfull \hbox (35.99501pt too wide) in paragraph at lines 2960--2960 \T1/ptm/m/it/10 = Overfull \hbox (240.52356pt too wide) in paragraph at lines 2960--2960 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 NUM_PEOPLE_WITH_RESISTANT_INFECTION\TS1/ptm/m /it/10 '\T1/ptm/m/n/10 , Overfull \hbox (68.48471pt too wide) in paragraph at lines 2960--2960 \T1/ptm/m/it/10 age_bins: Overfull \hbox (41.47458pt too wide) in paragraph at lines 2960--2960 [][]\T1/ptm/m/it/10 list[][] Overfull \hbox (35.99501pt too wide) in paragraph at lines 2960--2960 \T1/ptm/m/it/10 = Overfull \hbox (52.85487pt too wide) in paragraph at lines 2960--2960 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (40.35486pt too wide) in paragraph at lines 2960--2960 \T1/ptm/m/it/10 in- Overfull \hbox (40.35486pt too wide) in paragraph at lines 2960--2960 \T1/ptm/m/it/10 di- Overfull \hbox (44.7948pt too wide) in paragraph at lines 2960--2960 \T1/ptm/m/it/10 vid- Overfull \hbox (128.78384pt too wide) in paragraph at lines 2960--2960 \T1/ptm/m/it/10 ual_property_to_collect: Overfull \hbox (39.80469pt too wide) in paragraph at lines 2960--2960 [][]\T1/ptm/m/it/10 str[][] Overfull \hbox (35.99501pt too wide) in paragraph at lines 2960--2960 \T1/ptm/m/it/10 = Overfull \hbox (36.0248pt too wide) in paragraph at lines 2960--2960 \TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , Overfull \hbox (50.76463pt too wide) in paragraph at lines 2960--2960 \T1/ptm/m/it/10 strat- Overfull \hbox (89.68442pt too wide) in paragraph at lines 2960--2960 \T1/ptm/m/it/10 ify_by_gender: Overfull \hbox (39.8048pt too wide) in paragraph at lines 2960--2960 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (35.99501pt too wide) in paragraph at lines 2960--2960 \T1/ptm/m/it/10 = Overfull \hbox (40.24501pt too wide) in paragraph at lines 2960--2960 \T1/ptm/m/it/10 1\T1/pcr/m/n/10 ) [48] [49] Underfull \hbox (badness 10000) in paragraph at lines 3011--3011 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Overfull \hbox (17.85474pt too wide) in paragraph at lines 3040--3040 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , Overfull \hbox (19.79494pt too wide) in paragraph at lines 3040--3040 \T1/ptm/m/it/10 man- Overfull \hbox (5.35486pt too wide) in paragraph at lines 3040--3040 \T1/ptm/m/it/10 i- Overfull \hbox (15.63463pt too wide) in paragraph at lines 3040--3040 \T1/ptm/m/it/10 fest\T1/ptm/m/n/10 , Overfull \hbox (48.68404pt too wide) in paragraph at lines 3040--3040 \T1/ptm/m/it/10 species_list: Overfull \hbox (11.47458pt too wide) in paragraph at lines 3040--3040 [][]\T1/ptm/m/it/10 list[][] Overfull \hbox (5.99501pt too wide) in paragraph at lines 3040--3040 \T1/ptm/m/it/10 = Overfull \hbox (22.85487pt too wide) in paragraph at lines 3040--3040 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (20.76463pt too wide) in paragraph at lines 3040--3040 \T1/ptm/m/it/10 strat- Overfull \hbox (60.89413pt too wide) in paragraph at lines 3040--3040 \T1/ptm/m/it/10 ify_by_species: Overfull \hbox (9.8048pt too wide) in paragraph at lines 3040--3040 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (5.99501pt too wide) in paragraph at lines 3040--3040 \T1/ptm/m/it/10 = Overfull \hbox (6.74501pt too wide) in paragraph at lines 3040--3040 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , Overfull \hbox (10.35486pt too wide) in paragraph at lines 3040--3040 \T1/ptm/m/it/10 in- Overfull \hbox (70.75449pt too wide) in paragraph at lines 3040--3040 \T1/ptm/m/it/10 clude_wolbachia: Overfull \hbox (9.8048pt too wide) in paragraph at lines 3040--3040 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (5.99501pt too wide) in paragraph at lines 3040--3040 \T1/ptm/m/it/10 = Overfull \hbox (6.74501pt too wide) in paragraph at lines 3040--3040 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , Overfull \hbox (10.35486pt too wide) in paragraph at lines 3040--3040 \T1/ptm/m/it/10 in- Overfull \hbox (65.80426pt too wide) in paragraph at lines 3040--3040 \T1/ptm/m/it/10 clude_gestation: Overfull \hbox (9.8048pt too wide) in paragraph at lines 3040--3040 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (5.99501pt too wide) in paragraph at lines 3040--3040 \T1/ptm/m/it/10 = Overfull \hbox (6.74501pt too wide) in paragraph at lines 3040--3040 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , Overfull \hbox (16.26491pt too wide) in paragraph at lines 3040--3040 \T1/ptm/m/it/10 bar- Overfull \hbox (25.34474pt too wide) in paragraph at lines 3040--3040 \T1/ptm/m/it/10 codes: Overfull \hbox (11.47458pt too wide) in paragraph at lines 3040--3040 [][]\T1/ptm/m/it/10 list[][] Overfull \hbox (5.99501pt too wide) in paragraph at lines 3040--3040 \T1/ptm/m/it/10 = Overfull \hbox (26.35487pt too wide) in paragraph at lines 3040--3040 \T1/ptm/m/it/10 None\T1/pcr/m/n/10 ) [50] Underfull \hbox (badness 10000) in paragraph at lines 3080--3080 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pa-ram-e-ters: Underfull \hbox (badness 10000) in paragraph at lines 3080--3080 \T1/ptm/m/it/10 dict = \T1/ptm/m/n/10 , Underfull \hbox (badness 6348) in paragraph at lines 3080--3080 \T1/ptm/m/it/10 En-abled: bool = Underfull \hbox (badness 10000) in paragraph at lines 3128--3128 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pa-ram-e-ters: Underfull \hbox (badness 10000) in paragraph at lines 3128--3128 \T1/ptm/m/it/10 dict = \T1/ptm/m/n/10 , Underfull \hbox (badness 6348) in paragraph at lines 3128--3128 \T1/ptm/m/it/10 En-abled: bool = [51] Underfull \hbox (badness 10000) in paragraph at lines 3152--3152 []\T1/ptm/m/it/10 class_name: Underfull \hbox (badness 10000) in paragraph at lines 3152--3152 \T1/ptm/m/it/10 = \T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3152--3152 \T1/ptm/m/it/10 En-abled: Overfull \hbox (0.5943pt too wide) in paragraph at lines 3152--3152 \T1/ptm/m/it/10 Pretty_Format: Overfull \hbox (55.2345pt too wide) in paragraph at lines 3177--3177 []\T1/ptm/m/it/10 class_name: Overfull \hbox (15.80469pt too wide) in paragraph at lines 3177--3177 \T1/ptm/m/it/10 str Overfull \hbox (11.99501pt too wide) in paragraph at lines 3177--3177 \T1/ptm/m/it/10 = Overfull \hbox (28.85487pt too wide) in paragraph at lines 3177--3177 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (18.57497pt too wide) in paragraph at lines 3177--3177 \T1/ptm/m/it/10 pa- Overfull \hbox (24.53493pt too wide) in paragraph at lines 3177--3177 \T1/ptm/m/it/10 ram- Overfull \hbox (13.01491pt too wide) in paragraph at lines 3177--3177 \T1/ptm/m/it/10 e- Overfull \hbox (23.4746pt too wide) in paragraph at lines 3177--3177 \T1/ptm/m/it/10 ters: Overfull \hbox (20.24474pt too wide) in paragraph at lines 3177--3177 \T1/ptm/m/it/10 dict Overfull \hbox (11.99501pt too wide) in paragraph at lines 3177--3177 \T1/ptm/m/it/10 = Overfull \hbox (27.5448pt too wide) in paragraph at lines 3177--3177 \T1/ptm/m/it/10 \T1/ptm/m/n/10 , Overfull \hbox (19.68495pt too wide) in paragraph at lines 3177--3177 \T1/ptm/m/it/10 En- Overfull \hbox (30.7948pt too wide) in paragraph at lines 3177--3177 \T1/ptm/m/it/10 abled: Overfull \hbox (23.0249pt too wide) in paragraph at lines 3177--3177 \T1/ptm/m/it/10 bool Overfull \hbox (11.99501pt too wide) in paragraph at lines 3177--3177 \T1/ptm/m/it/10 = Overfull \hbox (26.08485pt too wide) in paragraph at lines 3177--3177 \T1/ptm/m/it/10 True\T1/ptm/m/n/10 , Overfull \hbox (66.5943pt too wide) in paragraph at lines 3177--3177 \T1/ptm/m/it/10 Pretty_Format: Overfull \hbox (23.0249pt too wide) in paragraph at lines 3177--3177 \T1/ptm/m/it/10 bool Overfull \hbox (11.99501pt too wide) in paragraph at lines 3177--3177 \T1/ptm/m/it/10 = Overfull \hbox (29.58485pt too wide) in paragraph at lines 3177--3177 \T1/ptm/m/it/10 True\T1/pcr/m/n/10 ) Underfull \hbox (badness 5832) in paragraph at lines 3180--3185 \T1/ptm/m/n/10 The re-port can only be used when the sim-u-la-tion setup pa-ram -e-ter \T1/ptm/b/n/10 Malaria_Model \T1/ptm/m/n/10 is set to Overfull \hbox (13.2345pt too wide) in paragraph at lines 3202--3202 []\T1/ptm/m/it/10 class_name: Underfull \hbox (badness 10000) in paragraph at lines 3202--3202 \T1/ptm/m/it/10 str = Underfull \hbox (badness 10000) in paragraph at lines 3202--3202 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3202--3202 \T1/ptm/m/it/10 pa-ram-e- Underfull \hbox (badness 10000) in paragraph at lines 3202--3202 \T1/ptm/m/it/10 tory>\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3202--3202 \T1/ptm/m/it/10 En-abled: Underfull \hbox (badness 10000) in paragraph at lines 3202--3202 \T1/ptm/m/it/10 bool Underfull \hbox (badness 10000) in paragraph at lines 3202--3202 \T1/ptm/m/it/10 = True\T1/ptm/m/n/10 , Overfull \hbox (24.5943pt too wide) in paragraph at lines 3202--3202 \T1/ptm/m/it/10 Pretty_Format: Underfull \hbox (badness 10000) in paragraph at lines 3202--3202 \T1/ptm/m/it/10 bool = [52] Underfull \hbox (badness 10000) in paragraph at lines 3227--3227 []\T1/ptm/m/it/10 class_name: str = Underfull \hbox (badness 10000) in paragraph at lines 3227--3227 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pa-ram-e-ters: Underfull \hbox (badness 6236) in paragraph at lines 3275--3275 []\T1/ptm/m/it/10 class_name: str = Underfull \hbox (badness 10000) in paragraph at lines 3275--3275 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pa-ram-e-ters: Underfull \hbox (badness 10000) in paragraph at lines 3275--3275 \T1/ptm/m/it/10 dict = \T1/ptm/m/n/10 , [53] Underfull \hbox (badness 10000) in paragraph at lines 3299--3299 []\T1/ptm/m/it/10 class_name: str Underfull \hbox (badness 7291) in paragraph at lines 3299--3299 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pa-ram- Underfull \hbox (badness 10000) in paragraph at lines 3299--3299 \T1/ptm/m/it/10 e-ters: dict = Underfull \hbox (badness 10000) in paragraph at lines 3299--3299 \T1/ptm/m/it/10 \T1/ptm/m/n/10 , \T1/ptm/m/it/10 En- Underfull \hbox (badness 10000) in paragraph at lines 3299--3299 \T1/ptm/m/it/10 Pretty_Format: Underfull \hbox (badness 10000) in paragraph at lines 3328--3328 []\T1/ptm/m/it/10 class_name: Underfull \hbox (badness 10000) in paragraph at lines 3328--3328 \T1/ptm/m/it/10 pa-ram-e- Underfull \hbox (badness 10000) in paragraph at lines 3328--3328 \T1/ptm/m/it/10 \T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3328--3328 \T1/ptm/m/it/10 En-abled: Overfull \hbox (6.5943pt too wide) in paragraph at lines 3328--3328 \T1/ptm/m/it/10 Pretty_Format: Overfull \hbox (13.2345pt too wide) in paragraph at lines 3372--3372 []\T1/ptm/m/it/10 class_name: Underfull \hbox (badness 10000) in paragraph at lines 3372--3372 \T1/ptm/m/it/10 str = Underfull \hbox (badness 10000) in paragraph at lines 3372--3372 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3372--3372 \T1/ptm/m/it/10 pa-ram-e- Underfull \hbox (badness 10000) in paragraph at lines 3372--3372 \T1/ptm/m/it/10 tory>\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3372--3372 \T1/ptm/m/it/10 En-abled: Underfull \hbox (badness 10000) in paragraph at lines 3372--3372 \T1/ptm/m/it/10 bool Underfull \hbox (badness 10000) in paragraph at lines 3372--3372 \T1/ptm/m/it/10 = True\T1/ptm/m/n/10 , Overfull \hbox (24.5943pt too wide) in paragraph at lines 3372--3372 \T1/ptm/m/it/10 Pretty_Format: Underfull \hbox (badness 10000) in paragraph at lines 3372--3372 \T1/ptm/m/it/10 bool = [54] Underfull \hbox (badness 10000) in paragraph at lines 3396--3396 []\T1/ptm/m/it/10 class_name: Underfull \hbox (badness 10000) in paragraph at lines 3396--3396 \T1/ptm/m/it/10 str = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3396--3396 \T1/ptm/m/it/10 pa-ram-e-ters: Underfull \hbox (badness 10000) in paragraph at lines 3396--3396 \T1/ptm/m/it/10 dict = \T1/ptm/m/n/10 , \T1/ptm/m/it/10 En-abled: Underfull \hbox (badness 10000) in paragraph at lines 3396--3396 \T1/ptm/m/it/10 bool = True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3396--3396 \T1/ptm/m/it/10 Pretty_Format: Overfull \hbox (67.2345pt too wide) in paragraph at lines 3419--3419 []\T1/ptm/m/it/10 class_name: Overfull \hbox (27.80469pt too wide) in paragraph at lines 3419--3419 \T1/ptm/m/it/10 str Overfull \hbox (23.99501pt too wide) in paragraph at lines 3419--3419 \T1/ptm/m/it/10 = Overfull \hbox (40.85487pt too wide) in paragraph at lines 3419--3419 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (30.57497pt too wide) in paragraph at lines 3419--3419 \T1/ptm/m/it/10 pa- Overfull \hbox (36.53493pt too wide) in paragraph at lines 3419--3419 \T1/ptm/m/it/10 ram- Overfull \hbox (25.01491pt too wide) in paragraph at lines 3419--3419 \T1/ptm/m/it/10 e- Overfull \hbox (35.4746pt too wide) in paragraph at lines 3419--3419 \T1/ptm/m/it/10 ters: Overfull \hbox (32.24474pt too wide) in paragraph at lines 3419--3419 \T1/ptm/m/it/10 dict Overfull \hbox (23.99501pt too wide) in paragraph at lines 3419--3419 \T1/ptm/m/it/10 = Overfull \hbox (39.5448pt too wide) in paragraph at lines 3419--3419 \T1/ptm/m/it/10 \T1/ptm/m/n/10 , Overfull \hbox (31.68495pt too wide) in paragraph at lines 3419--3419 \T1/ptm/m/it/10 En- Overfull \hbox (42.7948pt too wide) in paragraph at lines 3419--3419 \T1/ptm/m/it/10 abled: Overfull \hbox (35.0249pt too wide) in paragraph at lines 3419--3419 \T1/ptm/m/it/10 bool Overfull \hbox (23.99501pt too wide) in paragraph at lines 3419--3419 \T1/ptm/m/it/10 = Overfull \hbox (38.08485pt too wide) in paragraph at lines 3419--3419 \T1/ptm/m/it/10 True\T1/ptm/m/n/10 , Overfull \hbox (78.5943pt too wide) in paragraph at lines 3419--3419 \T1/ptm/m/it/10 Pretty_Format: Overfull \hbox (35.0249pt too wide) in paragraph at lines 3419--3419 \T1/ptm/m/it/10 bool Overfull \hbox (23.99501pt too wide) in paragraph at lines 3419--3419 \T1/ptm/m/it/10 = Overfull \hbox (41.58485pt too wide) in paragraph at lines 3419--3419 \T1/ptm/m/it/10 True\T1/pcr/m/n/10 ) [55] Underfull \hbox (badness 10000) in paragraph at lines 3447--3447 []\T1/ptm/m/it/10 class_name: str Underfull \hbox (badness 7291) in paragraph at lines 3447--3447 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pa-ram- Underfull \hbox (badness 10000) in paragraph at lines 3447--3447 \T1/ptm/m/it/10 e-ters: dict = Underfull \hbox (badness 10000) in paragraph at lines 3447--3447 \T1/ptm/m/it/10 \T1/ptm/m/n/10 , \T1/ptm/m/it/10 En- Underfull \hbox (badness 10000) in paragraph at lines 3447--3447 \T1/ptm/m/it/10 Pretty_Format: Overfull \hbox (37.2345pt too wide) in paragraph at lines 3471--3471 []\T1/ptm/m/it/10 class_name: Underfull \hbox (badness 10000) in paragraph at lines 3471--3471 \T1/ptm/m/it/10 str Underfull \hbox (badness 10000) in paragraph at lines 3471--3471 \T1/ptm/m/it/10 = Overfull \hbox (10.85487pt too wide) in paragraph at lines 3471--3471 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (0.57497pt too wide) in paragraph at lines 3471--3471 \T1/ptm/m/it/10 pa- Overfull \hbox (6.53493pt too wide) in paragraph at lines 3471--3471 \T1/ptm/m/it/10 ram- Underfull \hbox (badness 10000) in paragraph at lines 3471--3471 \T1/ptm/m/it/10 e- Overfull \hbox (5.4746pt too wide) in paragraph at lines 3471--3471 \T1/ptm/m/it/10 ters: Overfull \hbox (2.24474pt too wide) in paragraph at lines 3471--3471 \T1/ptm/m/it/10 dict Underfull \hbox (badness 10000) in paragraph at lines 3471--3471 \T1/ptm/m/it/10 = Overfull \hbox (9.5448pt too wide) in paragraph at lines 3471--3471 \T1/ptm/m/it/10 \T1/ptm/m/n/10 , Overfull \hbox (1.68495pt too wide) in paragraph at lines 3471--3471 \T1/ptm/m/it/10 En- Overfull \hbox (12.7948pt too wide) in paragraph at lines 3471--3471 \T1/ptm/m/it/10 abled: Overfull \hbox (5.0249pt too wide) in paragraph at lines 3471--3471 \T1/ptm/m/it/10 bool Underfull \hbox (badness 10000) in paragraph at lines 3471--3471 \T1/ptm/m/it/10 = Overfull \hbox (8.08485pt too wide) in paragraph at lines 3471--3471 \T1/ptm/m/it/10 True\T1/ptm/m/n/10 , Overfull \hbox (48.5943pt too wide) in paragraph at lines 3471--3471 \T1/ptm/m/it/10 Pretty_Format: Overfull \hbox (5.0249pt too wide) in paragraph at lines 3471--3471 \T1/ptm/m/it/10 bool Underfull \hbox (badness 10000) in paragraph at lines 3471--3471 \T1/ptm/m/it/10 = Overfull \hbox (11.58485pt too wide) in paragraph at lines 3471--3471 \T1/ptm/m/it/10 True\T1/pcr/m/n/10 ) [56] Underfull \hbox (badness 10000) in paragraph at lines 3524--3524 []\T1/ptm/m/it/10 config\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/ 10 , Overfull \hbox (24.52415pt too wide) in paragraph at lines 3524--3524 \T1/ptm/m/it/10 var_gene_randomness_type: Underfull \hbox (badness 10000) in paragraph at lines 3524--3524 [][]\T1/ptm/m/it/10 str[][] = Underfull \hbox (badness 10000) in paragraph at lines 3525--3527 \T1/ptm/m/n/10 Sets up the de-fault pa-ram-e-ters for par-a-site ge-net-ics sim -u-la-tions Malaria_Model = [57] [58] [59] [60] Underfull \hbox (badness 10000) in paragraph at lines 3907--3907 []\T1/ptm/m/it/10 config\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/ 10 , \T1/ptm/m/it/10 in-sec- Underfull \hbox (badness 6675) in paragraph at lines 3907--3907 \T1/ptm/m/it/10 ti-cide_name: [][]str[][] = \TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , Underfull \hbox (badness 5939) in paragraph at lines 3907--3907 \T1/ptm/m/it/10 species: [][]str[][] = \TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , \T1/ ptm/m/it/10 al- Underfull \hbox (badness 6047) in paragraph at lines 3907--3907 \T1/ptm/m/it/10 block-ing: [][]float[][] = 1.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3907--3907 \T1/ptm/m/it/10 pelling: [][]float[][] = 1.0\T1/ptm/m/n/10 , [61] [62] [63] [64] Overfull \hbox (54.6225pt too wide) in paragraph at lines 4077--4078 []\T1/pcr/m/n/10 emodpy_malaria.demographics.MalariaDemographics\T1/ptm/m/n/10 , Overfull \hbox (12.6225pt too wide) in paragraph at lines 4081--4082 []\T1/pcr/m/n/10 emodpy_malaria.interventions.diag_survey\T1/ptm/m/n/10 , Overfull \hbox (24.6225pt too wide) in paragraph at lines 4083--4084 []\T1/pcr/m/n/10 emodpy_malaria.interventions.drug_campaign\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4084--4085 []\T1/pcr/m/n/10 emodpy_malaria.interventions.inputeir\T1/ptm/m/n/10 , Overfull \hbox (6.6225pt too wide) in paragraph at lines 4086--4087 []\T1/pcr/m/n/10 emodpy_malaria.interventions.ivermectin\T1/ptm/m/n/10 , Overfull \hbox (36.6225pt too wide) in paragraph at lines 4087--4088 []\T1/pcr/m/n/10 emodpy_malaria.interventions.mosquitorelease\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4088--4089 []\T1/pcr/m/n/10 emodpy_malaria.interventions.outbreak\T1/ptm/m/n/10 , Overfull \hbox (36.6225pt too wide) in paragraph at lines 4089--4090 []\T1/pcr/m/n/10 emodpy_malaria.interventions.outdoorrestkill\T1/ptm/m/n/10 , Overfull \hbox (24.6225pt too wide) in paragraph at lines 4090--4091 []\T1/pcr/m/n/10 emodpy_malaria.interventions.spacespraying\T1/ptm/m/n/10 , Overfull \hbox (0.6225pt too wide) in paragraph at lines 4091--4092 []\T1/pcr/m/n/10 emodpy_malaria.interventions.sugartrap\T1/ptm/m/n/10 , Overfull \hbox (48.6225pt too wide) in paragraph at lines 4092--4093 []\T1/pcr/m/n/10 emodpy_malaria.interventions.treatment_seeking\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4093--4094 []\T1/pcr/m/n/10 emodpy_malaria.interventions.udbednet\T1/ptm/m/n/10 , [65] (./institute-for-disease-modeling-emodpy-malaria.ind [66] Underfull \hbox (badness 10000) in paragraph at lines 8--10 []\T1/pcr/m/n/10 add_alleles() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 10--12 []\T1/pcr/m/n/10 add_campaign_event() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 10--12 \T1/ptm/m/it/10 emodpy_malaria.interventions.outbreak\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 12--14 []\T1/pcr/m/n/10 add_diagnostic_survey() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod -ule Underfull \hbox (badness 10000) in paragraph at lines 12--14 \T1/ptm/m/it/10 emodpy_malaria.interventions.diag_survey\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 14--16 []\T1/pcr/m/n/10 add_drug_campaign() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (4.27083pt too wide) in paragraph at lines 14--16 \T1/ptm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 16--18 []\T1/pcr/m/n/10 add_drug_resistance() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 18--20 []\T1/pcr/m/n/10 add_drug_status_report() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 20--22 []\T1/pcr/m/n/10 add_fMDA() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (4.27083pt too wide) in paragraph at lines 20--22 \T1/ptm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 24--26 []\T1/pcr/m/n/10 add_insecticide_resistance() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 i n mod-ule Underfull \hbox (badness 10000) in paragraph at lines 26--28 []\T1/pcr/m/n/10 add_insecticide_resistance() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 i n mod-ule Underfull \hbox (badness 10000) in paragraph at lines 30--32 []\T1/pcr/m/n/10 add_malaria_patient_json_report() \T1/ptm/m/n/10 (\T1/ptm/m/it /10 in Underfull \hbox (badness 10000) in paragraph at lines 32--34 []\T1/pcr/m/n/10 add_malaria_sql_report() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 34--36 []\T1/pcr/m/n/10 add_malaria_summary_report() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 i n mod-ule Underfull \hbox (badness 10000) in paragraph at lines 38--40 []\T1/pcr/m/n/10 add_malaria_transmission_report() \T1/ptm/m/n/10 (\T1/ptm/m/it /10 in Underfull \hbox (badness 10000) in paragraph at lines 40--42 []\T1/pcr/m/n/10 add_MDA() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (4.27083pt too wide) in paragraph at lines 40--42 \T1/ptm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 42--44 []\T1/pcr/m/n/10 add_MSAT() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (4.27083pt too wide) in paragraph at lines 42--44 \T1/ptm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 44--46 []\T1/pcr/m/n/10 add_mutation() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 46--48 []\T1/pcr/m/n/10 add_outbreak_individual() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in m od-ule Underfull \hbox (badness 10000) in paragraph at lines 46--48 \T1/ptm/m/it/10 emodpy_malaria.interventions.outbreak\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 48--50 \T1/ptm/m/it/10 ule emodpy_malaria.interventions.outbreak\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 50--52 \T1/ptm/m/it/10 ule emodpy_malaria.interventions.outbreak\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 52--54 []\T1/pcr/m/n/10 add_OutdoorRestKill() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 54--56 []\T1/pcr/m/n/10 add_report_event_counter() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (52.1225pt too wide) in paragraph at lines 58--60 []\T1/pcr/m/n/10 add_report_node_demographics_malaria_genetics() Underfull \hbox (badness 10000) in paragraph at lines 60--62 []\T1/pcr/m/n/10 add_report_vector_genetics() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 i n mod-ule Underfull \hbox (badness 10000) in paragraph at lines 64--66 []\T1/pcr/m/n/10 add_report_vector_stats() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in m od-ule Overfull \hbox (22.1225pt too wide) in paragraph at lines 66--68 []\T1/pcr/m/n/10 add_report_vector_stats_malaria_genetics() Underfull \hbox (badness 10000) in paragraph at lines 68--70 []\T1/pcr/m/n/10 add_rfMDA() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (4.27083pt too wide) in paragraph at lines 68--70 \T1/ptm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 70--72 []\T1/pcr/m/n/10 add_rfMSAT() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (4.27083pt too wide) in paragraph at lines 70--72 \T1/ptm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 72--74 []\T1/pcr/m/n/10 add_spatial_report_malaria_filtered() Underfull \hbox (badness 10000) in paragraph at lines 74--76 []\T1/pcr/m/n/10 add_species() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 76--78 []\T1/pcr/m/n/10 add_species() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule [67] Underfull \hbox (badness 10000) in paragraph at lines 78--80 []\T1/pcr/m/n/10 add_species_drivers() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 80--81 []\T1/pcr/m/n/10 add_trait() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 81--83 []\T1/pcr/m/n/10 add_treatment_seeking() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod -ule Overfull \hbox (13.89015pt too wide) in paragraph at lines 81--83 \T1/ptm/m/it/10 emodpy_malaria.interventions.treatment_seeking\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 83--85 []\T1/pcr/m/n/10 add_vector_habitat_report() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 85--87 []\T1/pcr/m/n/10 AntimalarialDrug() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 85--87 \T1/ptm/m/it/10 emodpy_malaria.interventions.common\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 87--89 []\T1/pcr/m/n/10 AntimalarialDrug() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 92--94 []\T1/pcr/m/n/10 BasicBednet() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 94--96 []\T1/pcr/m/n/10 Bednet() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (59.0599pt too wide) in paragraph at lines 99--101 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.MalariaImmunityReport Overfull \hbox (72.70978pt too wide) in paragraph at lines 101--103 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.MalariaPatientJSONReport Overfull \hbox (34.07018pt too wide) in paragraph at lines 103--105 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.MalariaSqlReport Overfull \hbox (59.06006pt too wide) in paragraph at lines 105--107 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.MalariaSummaryReport Overfull \hbox (79.58981pt too wide) in paragraph at lines 107--109 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.MalariaSurveyJSONAnalyzer Overfull \hbox (34.07019pt too wide) in paragraph at lines 109--111 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.ReportDrugStatus Overfull \hbox (44.06006pt too wide) in paragraph at lines 111--113 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.ReportEventCounter Overfull \hbox (93.57004pt too wide) in paragraph at lines 113--115 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.ReportHumanMigrationTracking Overfull \hbox (68.25012pt too wide) in paragraph at lines 115--117 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.ReportNodeDemographics Overfull \hbox (136.01923pt too wide) in paragraph at lines 117--119 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.ReportNodeDemographicsMalariaGenetics Overfull \hbox (125.03925pt too wide) in paragraph at lines 119--121 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.ReportSimpleMalariaTransmissionJSON Overfull \hbox (49.04977pt too wide) in paragraph at lines 121--123 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.ReportVectorGenetics Overfull \hbox (54.46992pt too wide) in paragraph at lines 123--125 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.ReportVectorMigration Overfull \hbox (33.50998pt too wide) in paragraph at lines 125--127 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.ReportVectorStats Overfull \hbox (101.27908pt too wide) in paragraph at lines 127--129 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.ReportVectorStatsMalariaGenetics Overfull \hbox (81.02942pt too wide) in paragraph at lines 129--131 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.SpatialReportMalariaFiltered Overfull \hbox (44.61995pt too wide) in paragraph at lines 131--133 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.VectorHabitatReport Underfull \hbox (badness 10000) in paragraph at lines 136--138 []\T1/pcr/m/n/10 drug_configs_from_code() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule Overfull \hbox (4.27083pt too wide) in paragraph at lines 136--138 \T1/ptm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/ptm/m/n/10 ), Overfull \hbox (52.1225pt too wide) in paragraph at lines 145--146 []\T1/pcr/m/n/10 emodpy_malaria.demographics.MalariaDemographics Overfull \hbox (10.1225pt too wide) in paragraph at lines 153--154 []\T1/pcr/m/n/10 emodpy_malaria.interventions.diag_survey Overfull \hbox (22.1225pt too wide) in paragraph at lines 157--158 []\T1/pcr/m/n/10 emodpy_malaria.interventions.drug_campaign Overfull \hbox (4.1225pt too wide) in paragraph at lines 163--164 []\T1/pcr/m/n/10 emodpy_malaria.interventions.ivermectin Overfull \hbox (34.1225pt too wide) in paragraph at lines 165--166 []\T1/pcr/m/n/10 emodpy_malaria.interventions.mosquitorelease Overfull \hbox (34.1225pt too wide) in paragraph at lines 169--170 []\T1/pcr/m/n/10 emodpy_malaria.interventions.outdoorrestkill Overfull \hbox (22.1225pt too wide) in paragraph at lines 171--172 []\T1/pcr/m/n/10 emodpy_malaria.interventions.spacespraying Overfull \hbox (46.1225pt too wide) in paragraph at lines 175--176 []\T1/pcr/m/n/10 emodpy_malaria.interventions.treatment_seeking [68] Underfull \hbox (badness 10000) in paragraph at lines 190--192 []\T1/pcr/m/n/10 fmda_cfg() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (4.27083pt too wide) in paragraph at lines 190--192 \T1/ptm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 192--194 []\T1/pcr/m/n/10 from_params() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (36.54083pt too wide) in paragraph at lines 192--194 \T1/ptm/m/it/10 emodpy_malaria.demographics.MalariaDemographics\T1/ptm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 194--196 []\T1/pcr/m/n/10 from_pop_csv() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (36.54083pt too wide) in paragraph at lines 194--196 \T1/ptm/m/it/10 emodpy_malaria.demographics.MalariaDemographics\T1/ptm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 196--198 []\T1/pcr/m/n/10 from_template_node() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ul e Overfull \hbox (36.54083pt too wide) in paragraph at lines 196--198 \T1/ptm/m/it/10 emodpy_malaria.demographics.MalariaDemographics\T1/ptm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 201--203 []\T1/pcr/m/n/10 get_drug_params() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 203--205 []\T1/pcr/m/n/10 get_file_from_http() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 205--207 []\T1/pcr/m/n/10 get_species_params() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 207--209 []\T1/pcr/m/n/10 get_species_params() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 212--214 []\T1/pcr/m/n/10 InputEIR() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 212--214 \T1/ptm/m/it/10 emodpy_malaria.interventions.inputeir\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 214--216 []\T1/pcr/m/n/10 IRSHousingModification() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 216--218 []\T1/pcr/m/n/10 Ivermectin() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 216--218 \T1/ptm/m/it/10 emodpy_malaria.interventions.ivermectin\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 221--223 []\T1/pcr/m/n/10 MalariaDemographics \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Overfull \hbox (36.54083pt too wide) in paragraph at lines 221--223 \T1/ptm/m/it/10 emodpy_malaria.demographics.MalariaDemographics\T1/ptm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 223--225 []\T1/pcr/m/n/10 MalariaDiagnostic() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 223--225 \T1/ptm/m/it/10 emodpy_malaria.interventions.common\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 225--227 []\T1/pcr/m/n/10 MalariaImmunityReport \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 227--229 []\T1/pcr/m/n/10 MalariaPatientJSONReport \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 229--231 []\T1/pcr/m/n/10 MalariaSqlReport \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 231--233 []\T1/pcr/m/n/10 MalariaSummaryReport \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 233--235 []\T1/pcr/m/n/10 MalariaSurveyJSONAnalyzer \T1/ptm/m/n/10 (\T1/ptm/m/it/10 clas s in Overfull \hbox (74.6225pt too wide) in paragraph at lines 238--239 []| \T1/pcr/m/n/10 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\T1/pcr/m/n/10 emodpy_malaria.interventions.udbednet\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 259--261 []\T1/pcr/m/n/10 MosquitoRelease() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (6.12027pt too wide) in paragraph at lines 259--261 \T1/ptm/m/it/10 emodpy_malaria.interventions.mosquitorelease\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 264--266 []\T1/pcr/m/n/10 new_intervention() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 264--266 \T1/ptm/m/it/10 emodpy_malaria.interventions.inputeir\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 266--268 []\T1/pcr/m/n/10 new_intervention_as_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 268--270 []\T1/pcr/m/n/10 new_intervention_as_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 270--272 []\T1/pcr/m/n/10 new_intervention_as_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule [69] Underfull \hbox (badness 10000) in paragraph at lines 272--274 []\T1/pcr/m/n/10 new_intervention_as_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 274--276 []\T1/pcr/m/n/10 new_intervention_as_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (6.12027pt too wide) in paragraph at lines 274--276 \T1/ptm/m/it/10 emodpy_malaria.interventions.mosquitorelease\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 276--278 []\T1/pcr/m/n/10 new_intervention_as_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 276--278 \T1/ptm/m/it/10 emodpy_malaria.interventions.spacespraying\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 278--280 []\T1/pcr/m/n/10 new_intervention_as_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 280--282 []\T1/pcr/m/n/10 new_intervention_as_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (71.0599pt too wide) in paragraph at lines 285--287 []\T1/pcr/m/n/10 parameters \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.repo rters.builtin.MalariaImmunityReport Overfull \hbox (84.70978pt too wide) in paragraph at lines 287--289 []\T1/pcr/m/n/10 parameters \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.repo rters.builtin.MalariaPatientJSONReport Overfull \hbox (46.07018pt too wide) in paragraph at lines 289--291 []\T1/pcr/m/n/10 parameters \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.repo rters.builtin.MalariaSqlReport Overfull \hbox (71.06006pt too wide) in paragraph at lines 291--293 []\T1/pcr/m/n/10 parameters \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.repo rters.builtin.MalariaSummaryReport Overfull \hbox (91.58981pt too wide) in paragraph at lines 293--295 []\T1/pcr/m/n/10 parameters \T1/ptm/m/n/10 (\T1/ptm/m/it/10 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paragraph at lines 616--616 \T1/ptm/m/it/10 365\T1/ptm/m/n/10 , \T1/ptm/m/it/10 us-age_decay_rate: [][]floa t[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 us- [11] Underfull \hbox (badness 10000) in paragraph at lines 693--693 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age=1.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 693--693 \T1/ptm/m/it/10 block-ing_eff=1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 killing_eff=1\T 1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 736--736 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day\T1/ptm/m/n/10 , [12] Underfull \hbox (badness 10000) in paragraph at lines 767--767 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Mea-sure- Underfull \hbox (badness 10000) in paragraph at lines 767--767 \T1/ptm/m/it/10 ment_Sensitivity\T1/ptm/m/n/10 , \T1/ptm/m/it/10 De-tec- Underfull \hbox (badness 10000) in paragraph at lines 767--767 \T1/ptm/m/it/10 tion_Threshold\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Di-ag-nos- Overfull \hbox (31.21352pt too wide) in paragraph at lines 836--836 \T1/ptm/m/it/10 tsteps_btwn_repetitions: Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 get: [][]ob-ject[][] Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Ev-ery-one\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 6364) in paragraph at lines 836--836 \T1/ptm/m/it/10 start_day: [][]int[][] Underfull \hbox (badness 5203) in paragraph at lines 836--836 \T1/ptm/m/it/10 = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 di-ag-nos- Overfull \hbox (63.55446pt too wide) in paragraph at lines 836--836 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 BLOOD_SMEAR_PARASITES\TS1/ptm/m/it/10 '\T1/pt m/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 di-ag-nos- Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 tic_threshold: Underfull \hbox (badness 10000) in paragraph at lines 836--836 [][]\T1/ptm/m/it/10 float[][] = 40\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 mea-sure- Overfull \hbox (1.01384pt too wide) in paragraph at lines 836--836 \T1/ptm/m/it/10 ment_sensitivity: Underfull \hbox (badness 10000) in paragraph at lines 836--836 [][]\T1/ptm/m/it/10 float[][] = 0.1\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 event_name: Underfull \hbox (badness 10000) in paragraph at lines 836--836 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Di-ag- Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 nos-tic Sur-vey\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 6364) in paragraph at lines 836--836 \T1/ptm/m/it/10 node_ids: [][]list[][] Overfull \hbox (27.58405pt too wide) in paragraph at lines 836--836 \T1/ptm/m/it/10 tive_diagnosis_configs: Underfull \hbox (badness 10000) in paragraph at lines 836--836 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 neg-a- Overfull \hbox (27.58405pt too wide) in paragraph at lines 836--836 \T1/ptm/m/it/10 tive_diagnosis_configs: Overfull \hbox (6.95406pt too wide) in paragraph at lines 836--836 \T1/ptm/m/it/10 ceived_test_event: Underfull \hbox (badness 10000) in paragraph at lines 836--836 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Re- Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 ceived_Test\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 IP_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 836--836 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 NP_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 836--836 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 dis-qual-i-fy- Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 ing_properties: Overfull \hbox (9.814pt too wide) in paragraph at lines 836--836 \T1/ptm/m/it/10 ger_condition_list: Underfull \hbox (badness 10000) in paragraph at lines 836--836 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 lis-ten- Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 ing_duration: Overfull \hbox (29.97432pt too wide) in paragraph at lines 836--836 \T1/ptm/m/it/10 gered_campaign_delay: Underfull \hbox (badness 10000) in paragraph at lines 836--836 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , Overfull \hbox (47.68343pt too wide) in paragraph at lines 836--836 \T1/ptm/m/it/10 check_eligibility_at_trigger: Overfull \hbox (9.71407pt too wide) in paragraph at lines 836--836 \T1/ptm/m/it/10 pire_recent_drugs: [13] [14] Underfull \hbox (badness 10000) in paragraph at lines 869--872 []\T1/pcr/b/n/10 diagnostic_type \T1/ptm/m/n/10 ^^U Type of malaria di-ag-nos-t ic used. De-fault is Underfull \hbox (badness 10000) in paragraph at lines 911--914 []\T1/ptm/m/n/10 In ga-me-to-cytes/microliter, use mea-sure- Underfull \hbox (badness 10000) in paragraph at lines 934--936 []\T1/pcr/b/n/10 measurement_sensitivity \T1/ptm/m/n/10 ^^U Set-ting for \T1/pt m/b/n/10 Mea-sure-ment_Sensitivity \T1/ptm/m/n/10 in [15] Underfull \hbox (badness 10000) in paragraph at lines 957--962 []\T1/pcr/b/n/10 IP_restrictions \T1/ptm/m/n/10 ^^U List of In-di-vid-u-al-Prop -erty key:value pairs that Underfull \hbox (badness 10000) in paragraph at lines 957--962 \T1/ptm/m/n/10 in-di-vid-u-als must have to re-ceive the di-ag-nos-tic in-ter-v en-tion. For Underfull \hbox (badness 10000) in paragraph at lines 957--962 \T1/ptm/m/n/10 ex-am-ple, \T1/pcr/m/n/10 [{"IndividualProperty1":"PropertyValue 1"}, Underfull \hbox (badness 10000) in paragraph at lines 964--969 []\T1/pcr/b/n/10 NP_restrictions \T1/ptm/m/n/10 ^^U List of Node-Prop-erty key: value pairs Underfull \hbox (badness 10000) in paragraph at lines 964--969 \T1/ptm/m/n/10 that nodes must have to re-ceive the di-ag-nos-tic in-ter-ven-ti on. Underfull \hbox (badness 10000) in paragraph at lines 964--969 \T1/ptm/m/n/10 For ex-am-ple, \T1/pcr/m/n/10 [{"NodeProperty1":"PropertyValue1" }, Underfull \hbox (badness 10000) in paragraph at lines 971--975 []\T1/pcr/b/n/10 disqualifying_properties \T1/ptm/m/n/10 ^^U List of In-di-vid- u-al-Prop-erty Underfull \hbox (badness 10000) in paragraph at lines 971--975 \T1/ptm/m/n/10 key:value pairs that cause an in-ter-ven-tion to be aborted. For ex- Underfull \hbox (badness 10000) in paragraph at lines 971--975 \T1/ptm/m/n/10 am-ple, \T1/pcr/m/n/10 [{"IndividualProperty1":"PropertyValue1"} , Underfull \hbox (badness 10000) in paragraph at lines 994--997 []\T1/pcr/b/n/10 expire_recent_drugs \T1/ptm/m/n/10 ^^U Adds \T1/pcr/m/n/10 [{" DrugStatus:None"}] \T1/ptm/m/n/10 to \T1/ptm/b/n/10 Prop- [16] Underfull \hbox (badness 10000) in paragraph at lines 1083--1083 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1083--1083 \T1/ptm/m/it/10 drug_code: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cam- Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 paign_type: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 MDA\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 6775) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_days: Overfull \hbox (19.21352pt too wide) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 tsteps_btwn_repetitions: Underfull \hbox (badness 7344) in paragraph at lines 1114--1114 [][]\T1/ptm/m/it/10 int[][] = 60\T1/ptm/m/n/10 , \T1/ptm/m/it/10 di-ag- Overfull \hbox (51.55446pt too wide) in paragraph at lines 1114--1114 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 BLOOD_SMEAR_PARASITES\TS1/ptm/m/it/10 '\T1/pt m/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 di-ag-nos- Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 = 40\T1/ptm/m/n/10 , \T1/ptm/m/it/10 mea-sure- Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 ment_sensitivity: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 [][]\T1/ptm/m/it/10 float[][] = 0.1\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 fmda_radius: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , Overfull \hbox (6.22408pt too wide) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 node_selection_type: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 DIS- Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 TANCE_ONLY\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 trig-ger_coverage: Underfull \hbox (badness 5667) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 balls: [][]int[][] = 0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 treat-ment_delay: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 trig- Overfull \hbox (17.97432pt too wide) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 gered_campaign_delay: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 tar-get_group: Overfull \hbox (33.88365pt too wide) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 drug_ineligibility_duration: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , Overfull \hbox (33.19351pt too wide) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Overfull \hbox (26.53346pt too wide) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 dis-qual-i-fy- Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 ing_properties: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 ger_condition_list: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 ten-ing_duration: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 ent_drug_configs: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 get_residents_only: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 [][]\T1/ptm/m/it/10 int[][] = 1\T1/ptm/m/n/10 , Overfull \hbox (35.68343pt too wide) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 check_eligibility_at_trigger: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 [][]\T1/ptm/m/it/10 bool[][] = Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 False\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-ceiv- Overfull \hbox (144.47322pt too wide) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 ing_drugs_event_name=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Received _Campaign_Drugs\TS1/ptm/m/it/10 '\T1/pcr/m/n/10 ) [17] [18] [19] Underfull \hbox (badness 10000) in paragraph at lines 1265--1268 []\T1/pcr/b/n/10 ind_property_restrictions \T1/ptm/m/n/10 ^^U The set-ting for \T1/ptm/b/n/10 Prop- Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_days: [][]list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age: [][]float[][] = Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 drug_configs: [][]list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-ceiv-ing_drugs_event: Overfull \hbox (57.71327pt too wide) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 emod_api.interventions.common.BroadcastEvent Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 rep-e-ti-tions: [][]int[ ][] = Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tsteps_btwn_repetitions: Underfull \hbox (badness 6348) in paragraph at lines 1310--1310 [][]\T1/ptm/m/it/10 int[][] = 60\T1/ptm/m/n/10 , \T1/ptm/m/it/10 node_ids: [][] list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ex-pire_recent_drugs: Overfull \hbox (86.50304pt too wide) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 emod_api.interventions.common.PropertyValueChanger Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 6032) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 dis-qual-i- fy- Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 ing_properties: [][]list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 trig-ger_condition_list: [][]list[][] = [20] Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_days: [][]list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age: [][]float[][] = Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 \T1/ptm/m/it/10 1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 drug_configs: [][]list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-ceiv-ing_drugs_event: Overfull \hbox (63.71327pt too wide) in paragraph at lines 1325--1325 \T1/ptm/m/it/10 emod_api.interventions.common.BroadcastEvent Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 \T1/ptm/m/it/10 tsteps_btwn_repetitions: [][]int[][] Underfull \hbox (badness 7504) in paragraph at lines 1325--1325 \T1/ptm/m/it/10 = 60\T1/ptm/m/n/10 , \T1/ptm/m/it/10 treat-ment_delay: [][]int[ ][] Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 BLOOD_SMEAR_PARASITES\TS1/ptm/m/it/10 '\T1/pt m/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 \T1/ptm/m/it/10 40\T1/ptm/m/n/10 , \T1/ptm/m/it/10 mea-sure-ment_sensitivity: Underfull \hbox (badness 6063) in paragraph at lines 1325--1325 [][]\T1/ptm/m/it/10 float[][] = 0.1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 node_ids: [ ][]list[][] Overfull \hbox (92.50304pt too wide) in paragraph at lines 1325--1325 \T1/ptm/m/it/10 emod_api.interventions.common.PropertyValueChanger Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar-get_gro up: Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 \T1/ptm/m/it/10 any = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Ev-ery-one\TS1/ptm/m/it /10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 trig- Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 \T1/ptm/m/it/10 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 check_eligibility_at_trigger: Underfull \hbox (badness 10000) in paragraph at lines 1326--1329 \T1/ptm/m/n/10 Add an MSAT (mass screen-ing and treat-ment) drug in-ter-ven-tio n to your cam-paign. See [21] Underfull \hbox (badness 10000) in paragraph at lines 1340--1340 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_days: [][]list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1340--1340 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 trig-ger_coverage: Underfull \hbox (badness 7221) in paragraph at lines 1340--1340 [][]\T1/ptm/m/it/10 float[][] = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age: [ ][]float[][] Underfull \hbox (badness 7595) in paragraph at lines 1340--1340 \T1/ptm/m/it/10 = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 drug_configs: [][]list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1340--1340 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-ceiv-ing_drugs_event: Overfull \hbox (63.71327pt too wide) in paragraph at lines 1340--1340 \T1/ptm/m/it/10 emod_api.interventions.common.BroadcastEvent Underfull \hbox (badness 10000) in paragraph at lines 1340--1340 \T1/ptm/m/it/10 tsteps_btwn_repetitions: [][]int[][] Underfull \hbox (badness 10000) in paragraph at lines 1340--1340 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 BLOOD_SMEAR_PARASITES\TS1/ptm/m/it/10 '\T1/pt m/m/n/10 , Overfull \hbox (92.50304pt too wide) in paragraph at lines 1340--1340 \T1/ptm/m/it/10 emod_api.interventions.common.PropertyValueChanger Underfull \hbox (badness 10000) in paragraph at lines 1340--1340 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1340--1340 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1340--1340 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1340--1340 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar-get_gro up: Underfull \hbox (badness 10000) in paragraph at lines 1340--1340 \T1/ptm/m/it/10 any = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Ev-ery-one\TS1/ptm/m/it /10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 trig- Underfull \hbox (badness 7869) in paragraph at lines 1341--1344 \T1/ptm/m/n/10 Add an fMDA (fo-cal mass drug ad-min-is-tra-tion) drug in-ter-ve n-tion to your cam-paign. See Underfull \hbox (badness 10000) in paragraph at lines 1355--1355 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day: [][]int[][] = Underfull \hbox (badness 6141) in paragraph at lines 1355--1355 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age: [][]float[][] = 1 \T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1355--1355 \T1/ptm/m/it/10 re-ceiv-ing_drugs_event: Overfull \hbox (75.71327pt too wide) in paragraph at lines 1355--1355 \T1/ptm/m/it/10 emod_api.interventions.common.BroadcastEvent Overfull \hbox (9.55446pt too wide) in paragraph at lines 1355--1355 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 BLOOD_SMEAR_PARASITES\TS1/ptm/m/it/10 '\T1/pt m/m/n/10 , Overfull \hbox (104.50304pt too wide) in paragraph at lines 1355--1355 \T1/ptm/m/it/10 emod_api.interventions.common.PropertyValueChanger Underfull \hbox (badness 10000) in paragraph at lines 1355--1355 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1355--1355 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1355--1355 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1355--1355 \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1355--1355 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 dis-qual-i- fy- [22] Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day: [][]int[][] = Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age: [][]float[][] = 1 \T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 \T1/ptm/m/it/10 re-ceiv-ing_drugs_event: Overfull \hbox (69.71327pt too wide) in paragraph at lines 1370--1370 \T1/ptm/m/it/10 emod_api.interventions.common.BroadcastEvent Underfull \hbox (badness 7613) in paragraph at lines 1370--1370 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lis-ten-ing_duration: Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 trig-ger_covera ge: Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 \T1/ptm/m/it/10 = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 node_selection_type: Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 DIS-TANCE_ONLY\ TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 \T1/ptm/m/it/10 node_ids: [][]list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 \T1/ptm/m/it/10 ex-pire_recent_drugs: Overfull \hbox (98.50304pt too wide) in paragraph at lines 1370--1370 \T1/ptm/m/it/10 emod_api.interventions.common.PropertyValueChanger Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 dis-qual-i- fy- Underfull \hbox (badness 10000) in paragraph at lines 1385--1385 \T1/ptm/m/it/10 TANCE_ONLY\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ev ent_trigger: [23] Underfull \hbox (badness 5091) in paragraph at lines 1448--1448 [][]\T1/ptm/m/it/10 int[][] = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 node_ids: [][]l ist[][] = None\T1/ptm/m/n/10 , [24] Underfull \hbox (badness 10000) in paragraph at lines 1485--1485 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1485--1485 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 5274) in paragraph at lines 1521--1521 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er- Underfull \hbox (badness 10000) in paragraph at lines 1521--1521 \T1/ptm/m/it/10 killing_eff=1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in- Underfull \hbox (badness 10000) in paragraph at lines 1521--1521 \T1/ptm/m/it/10 sec-ti-cide=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1542--1542 []\T1/ptm/m/it/10 schema_path_container\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1542--1542 [][]\T1/ptm/m/it/10 float[][] = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-mo- Underfull \hbox (badness 10000) in paragraph at lines 1542--1542 \T1/ptm/m/it/10 killing_exponential_decay_rate: [25] Underfull \hbox (badness 10000) in paragraph at lines 1585--1585 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1585--1585 \T1/ptm/m/it/10 re-leased_number: Underfull \hbox (badness 5954) in paragraph at lines 1585--1585 [][]\T1/ptm/m/it/10 int[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 1585--1585 \T1/ptm/m/it/10 leased_fraction: Underfull \hbox (badness 10000) in paragraph at lines 1585--1585 \T1/ptm/m/it/10 leased_infectious: Underfull \hbox (badness 10000) in paragraph at lines 1585--1585 [][]\T1/ptm/m/it/10 float[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 1585--1585 \T1/ptm/m/it/10 leased_species: Underfull \hbox (badness 10000) in paragraph at lines 1585--1585 \T1/ptm/m/it/10 re-leased_genome: Underfull \hbox (badness 10000) in paragraph at lines 1585--1585 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1605--1607 []\T1/pcr/b/n/10 released_infectious \T1/ptm/m/n/10 ^^U The frac-tion of vec-to rs re-leased that Underfull \hbox (badness 10000) in paragraph at lines 1605--1607 \T1/ptm/m/n/10 are to be in-fec-tious. One can only use this fea-ture when Overfull \hbox (16.27205pt too wide) in paragraph at lines 1605--1607 \T1/ptm/m/n/10 `Malaria_Model'!='MALARIA_MECHANISTIC_MODEL_WITH_PARASITE_GENETI CS' Underfull \hbox (badness 10000) in paragraph at lines 1631--1631 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Overfull \hbox (16.35448pt too wide) in paragraph at lines 1631--1631 \T1/ptm/m/it/10 start_day: Underfull \hbox (badness 10000) in paragraph at lines 1631--1631 [][]\T1/ptm/m/it/10 int[][] Underfull \hbox (badness 10000) in paragraph at lines 1631--1631 \T1/ptm/m/it/10 = 1\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1631--1631 \T1/ptm/m/it/10 file- Overfull \hbox (2.35487pt too wide) in paragraph at lines 1631--1631 \T1/ptm/m/it/10 None\T1/pcr/m/n/10 ) [26] Underfull \hbox (badness 10000) in paragraph at lines 1657--1657 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1657--1657 \T1/ptm/m/it/10 start_day: [][]int[][] Underfull \hbox (badness 10000) in paragraph at lines 1657--1657 \T1/ptm/m/it/10 = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-mo- Overfull \hbox (2.73457pt too wide) in paragraph at lines 1657--1657 \T1/ptm/m/it/10 graphic_coverage: Overfull \hbox (14.36418pt too wide) in paragraph at lines 1657--1657 \T1/ptm/m/it/10 get_num_individuals: Underfull \hbox (badness 10000) in paragraph at lines 1657--1657 [][]\T1/ptm/m/it/10 int[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1657--1657 \T1/ptm/m/it/10 node_ids: [][]list[][] Overfull \hbox (52.97314pt too wide) in paragraph at lines 1657--1657 \T1/ptm/m/it/10 timesteps_between_repetitions: Underfull \hbox (badness 10000) in paragraph at lines 1657--1657 [][]\T1/ptm/m/it/10 int[][] = 365\T1/ptm/m/n/10 , Overfull \hbox (32.53346pt too wide) in paragraph at lines 1657--1657 \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1657--1657 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Overfull \hbox (39.19351pt too wide) in paragraph at lines 1657--1657 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1657--1657 \T1/ptm/m/it/10 get_age_min: Underfull \hbox (badness 10000) in paragraph at lines 1657--1657 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar- Underfull \hbox (badness 10000) in paragraph at lines 1657--1657 \T1/ptm/m/it/10 get_age_max: Underfull \hbox (badness 10000) in paragraph at lines 1657--1657 \T1/ptm/m/it/10 get_gender: Underfull \hbox (badness 5359) in paragraph at lines 1657--1657 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 All\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ig- Underfull \hbox (badness 10000) in paragraph at lines 1657--1657 \T1/ptm/m/it/10 nore_immunity: Underfull \hbox (badness 10000) in paragraph at lines 1657--1657 [][]\T1/ptm/m/it/10 bool[][] = True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1657--1657 \T1/ptm/m/it/10 in-cu-ba- Overfull \hbox (16.02399pt too wide) in paragraph at lines 1657--1657 \T1/ptm/m/it/10 tion_period_override: [27] Underfull \hbox (badness 5893) in paragraph at lines 1681--1683 []\T1/pcr/b/n/10 repetitions \T1/ptm/m/n/10 ^^U The num-ber of times an in-ter- ven-tion is given, used with Overfull \hbox (5.18481pt too wide) in paragraph at lines 1733--1733 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , Overfull \hbox (4.35448pt too wide) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 start_day: Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 de-mo- Overfull \hbox (38.73457pt too wide) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 graphic_coverage: Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 [][]\T1/ptm/m/it/10 float[][] = Overfull \hbox (50.36418pt too wide) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 get_num_individuals: Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 [][]\T1/ptm/m/it/10 int[][] = Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (2.6847pt too wide) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 node_ids: Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 rep-e-ti- Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 tions: Overfull \hbox (88.97314pt too wide) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 timesteps_between_repetitions: Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 [][]\T1/ptm/m/it/10 int[][] Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 = 365\T1/ptm/m/n/10 , Overfull \hbox (68.53346pt too wide) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (75.19351pt too wide) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 tar- Overfull \hbox (17.93463pt too wide) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 get_age_min: Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 [][]\T1/ptm/m/it/10 int[][] = Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar- Overfull \hbox (19.59468pt too wide) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 get_age_max: Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 [][]\T1/ptm/m/it/10 int[][] = Overfull \hbox (11.3646pt too wide) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 get_gender: Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 [][]\T1/ptm/m/it/10 str[][] = Overfull \hbox (26.75435pt too wide) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 nore_immunity: Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 [][]\T1/ptm/m/it/10 bool[][] = Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 in-cu-ba- Overfull \hbox (52.02399pt too wide) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 tion_period_override: Underfull \hbox (badness 5077) in paragraph at lines 1733--1733 [][]\T1/ptm/m/it/10 int[][] = - Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cre- Overfull \hbox (90.54375pt too wide) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 ate_nucleotide_sequence_from: Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 [][]\T1/ptm/m/it/10 str[][] = Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 BAR- Overfull \hbox (33.99452pt too wide) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 CODE_STRING\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 bar- Overfull \hbox (13.79442pt too wide) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 code_string: Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 [][]\T1/ptm/m/it/10 str[][] = Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (52.88371pt too wide) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 drug_resistant_string: Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 [][]\T1/ptm/m/it/10 str[][] = Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (43.23422pt too wide) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 msp_variant_value: Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 [][]\T1/ptm/m/it/10 int[][] = Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (64.34395pt too wide) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 pfemp1_variants_values: Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 bar- Overfull \hbox (155.51305pt too wide) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 code_allele_frequencies_per_genome_location: Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (194.60234pt too wide) in paragraph at lines 1733--1733 \T1/ptm/m/it/10 drug_resistant_allele_frequencies_per_genome_location: Underfull \hbox (badness 10000) in paragraph at lines 1733--1733 [][]\T1/ptm/m/it/10 list[][] = [28] Overfull \vbox (135.66997pt too high) has occurred while \output is active [29] Underfull \hbox (badness 5893) in paragraph at lines 1760--1762 []\T1/pcr/b/n/10 repetitions \T1/ptm/m/n/10 ^^U The num-ber of times an in-ter- ven-tion is given, used with [30] Overfull \hbox (11.18481pt too wide) in paragraph at lines 1849--1849 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , Overfull \hbox (10.35448pt too wide) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 start_day: Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 de-mo- Overfull \hbox (44.73457pt too wide) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 graphic_coverage: Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 [][]\T1/ptm/m/it/10 float[][] Underfull \hbox (badness 8151) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 = 1.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 tar- Overfull \hbox (56.36418pt too wide) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 get_num_individuals: Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 [][]\T1/ptm/m/it/10 int[][] = Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (8.6847pt too wide) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 node_ids: Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 rep-e-ti- Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 tions: Overfull \hbox (94.97314pt too wide) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 timesteps_between_repetitions: Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 [][]\T1/ptm/m/it/10 int[][] = Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 365\T1/ptm/m/n/10 , Overfull \hbox (74.53346pt too wide) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (81.19351pt too wide) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 tar- Overfull \hbox (23.93463pt too wide) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 get_age_min: Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 [][]\T1/ptm/m/it/10 int[][] = Overfull \hbox (25.59468pt too wide) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 get_age_max: Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 [][]\T1/ptm/m/it/10 int[][] = Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 125\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 tar- Overfull \hbox (17.3646pt too wide) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 get_gender: Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 [][]\T1/ptm/m/it/10 str[][] = Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 All\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 ig- Overfull \hbox (32.75435pt too wide) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 nore_immunity: Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 in-cu-ba- Overfull \hbox (58.02399pt too wide) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 tion_period_override: Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 [][]\T1/ptm/m/it/10 int[][] = Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 - 1\T1/ptm/m/n/10 , Overfull \hbox (10.34447pt too wide) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 irbc_type: Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 mi- Overfull \hbox (42.5643pt too wide) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 nor_epitope_type: Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (10.3446pt too wide) in paragraph at lines 1849--1849 \T1/ptm/m/it/10 msp_type: Underfull \hbox (badness 10000) in paragraph at lines 1849--1849 [][]\T1/ptm/m/it/10 int[][] = [31] Overfull \vbox (3.66997pt too high) has occurred while \output is active [32] Underfull \hbox (badness 5893) in paragraph at lines 1876--1878 []\T1/pcr/b/n/10 repetitions \T1/ptm/m/n/10 ^^U The num-ber of times an in-ter- ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 1934--1934 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day: Underfull \hbox (badness 10000) in paragraph at lines 1934--1934 [][]\T1/ptm/m/it/10 int[][] = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-mo- Underfull \hbox (badness 10000) in paragraph at lines 1934--1934 \T1/ptm/m/it/10 graphic_coverage: Underfull \hbox (badness 10000) in paragraph at lines 1934--1934 [][]\T1/ptm/m/it/10 float[][] = 1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar- Underfull \hbox (badness 10000) in paragraph at lines 1934--1934 \T1/ptm/m/it/10 get_num_individuals: Underfull \hbox (badness 10000) in paragraph at lines 1934--1934 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 rep-e- Underfull \hbox (badness 10000) in paragraph at lines 1934--1934 \T1/ptm/m/it/10 ti-tions: [][]int[][] = 1\T1/ptm/m/n/10 , Overfull \hbox (22.97314pt too wide) in paragraph at lines 1934--1934 \T1/ptm/m/it/10 timesteps_between_repetitions: Underfull \hbox (badness 10000) in paragraph at lines 1934--1934 [][]\T1/ptm/m/it/10 int[][] = 365\T1/ptm/m/n/10 , Overfull \hbox (2.53346pt too wide) in paragraph at lines 1934--1934 \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1934--1934 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Overfull \hbox (9.19351pt too wide) in paragraph at lines 1934--1934 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1934--1934 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar- Underfull \hbox (badness 10000) in paragraph at lines 1934--1934 \T1/ptm/m/it/10 get_age_min: [][]int[][] = [33] Underfull \hbox (badness 5893) in paragraph at lines 1960--1962 []\T1/pcr/b/n/10 repetitions \T1/ptm/m/n/10 ^^U The num-ber of times an in-ter- ven-tion is given, used with [34] Underfull \hbox (badness 10000) in paragraph at lines 2001--2001 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2001--2001 \T1/ptm/m/it/10 cide_name: Overfull \hbox (29.51352pt too wide) in paragraph at lines 2001--2001 \T1/ptm/m/it/10 killing_initial_effect: Underfull \hbox (badness 10000) in paragraph at lines 2001--2001 [][]\T1/ptm/m/it/10 float[][] = 1\T1/ptm/m/n/10 , Overfull \hbox (32.87419pt too wide) in paragraph at lines 2001--2001 \T1/ptm/m/it/10 killing_box_duration: Underfull \hbox (badness 10000) in paragraph at lines 2001--2001 [][]\T1/ptm/m/it/10 int[][] = 365\T1/ptm/m/n/10 , Overfull \hbox (74.87367pt too wide) in paragraph at lines 2001--2001 \T1/ptm/m/it/10 killing_exponential_decay_rate: Underfull \hbox (badness 10000) in paragraph at lines 2001--2001 [][]\T1/ptm/m/it/10 float[][] = 0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2043--2043 \T1/ptm/m/it/10 = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 spray_coverage: [35] Overfull \hbox (5.18481pt too wide) in paragraph at lines 2068--2068 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , Overfull \hbox (4.35448pt too wide) in paragraph at lines 2068--2068 \T1/ptm/m/it/10 start_day: Underfull \hbox (badness 10000) in paragraph at lines 2068--2068 \T1/ptm/m/it/10 file- Underfull \hbox (badness 10000) in paragraph at lines 2068--2068 \T1/ptm/m/it/10 name: Underfull \hbox (badness 10000) in paragraph at lines 2068--2068 [][]\T1/ptm/m/it/10 str[][] = Underfull \hbox (badness 6893) in paragraph at lines 2085--2085 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day: [][]int[] [] = 0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2129--2129 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , [36] Underfull \hbox (badness 10000) in paragraph at lines 2149--2149 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Overfull \hbox (10.35448pt too wide) in paragraph at lines 2149--2149 \T1/ptm/m/it/10 start_day: Underfull \hbox (badness 10000) in paragraph at lines 2149--2149 \T1/ptm/m/it/10 tar-gets: Underfull \hbox (badness 10000) in paragraph at lines 2149--2149 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2149--2149 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2149--2149 \T1/ptm/m/it/10 drug: Underfull \hbox (badness 10000) in paragraph at lines 2149--2149 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2149--2149 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (8.6847pt too wide) in paragraph at lines 2149--2149 \T1/ptm/m/it/10 node_ids: Underfull \hbox (badness 10000) in paragraph at lines 2149--2149 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2149--2149 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (74.53346pt too wide) in paragraph at lines 2149--2149 \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 2149--2149 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2149--2149 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (81.88365pt too wide) in paragraph at lines 2149--2149 \T1/ptm/m/it/10 drug_ineligibility_duration: Underfull \hbox (badness 6204) in paragraph at lines 2149--2149 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 du- Underfull \hbox (badness 10000) in paragraph at lines 2149--2149 \T1/ptm/m/it/10 ra-tion: Underfull \hbox (badness 10000) in paragraph at lines 2149--2149 [][]\T1/ptm/m/it/10 int[][] = Underfull \hbox (badness 10000) in paragraph at lines 2149--2149 \T1/ptm/m/it/10 - 1\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2149--2149 \T1/ptm/m/it/10 broad- Overfull \hbox (41.29442pt too wide) in paragraph at lines 2149--2149 \T1/ptm/m/it/10 cast_event_name: Underfull \hbox (badness 10000) in paragraph at lines 2149--2149 [][]\T1/ptm/m/it/10 str[][] = Underfull \hbox (badness 10000) in paragraph at lines 2149--2149 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Re- Overfull \hbox (18.86435pt too wide) in paragraph at lines 2149--2149 \T1/ptm/m/it/10 ceivedTreat- Underfull \hbox (badness 10000) in paragraph at lines 2165--2169 []\T1/pcr/b/n/10 of individuals to target with the intervention. Default is Underfull \hbox (badness 10000) in paragraph at lines 2165--2169 \T1/ptm/m/n/10 (\T1/pcr/m/sl/10 properties\T1/ptm/m/n/10 ) ^^U \T1/pcr/m/n/10 [ { "trigger":"NewClinicalCase","coverage":0. Underfull \hbox (badness 10000) in paragraph at lines 2165--2169 \T1/pcr/m/n/10 8,"agemin":15,"agemax":70, "seek":0.4,"rate":0.3}, Underfull \hbox (badness 10000) in paragraph at lines 2165--2169 \T1/pcr/m/n/10 {"trigger":"NewSevereCase","coverage":0.8,"seek":0.6, Underfull \hbox (badness 10000) in paragraph at lines 2183--2184 []\T1/pcr/b/n/10 must have to receive the intervention. For example, Underfull \hbox (badness 10000) in paragraph at lines 2183--2184 \T1/ptm/m/n/10 (\T1/pcr/m/sl/10 individuals\T1/ptm/m/n/10 ) ^^U \T1/pcr/m/n/10 ["IndividualProperty1:PropertyValue1", [37] Underfull \hbox (badness 10000) in paragraph at lines 2213--2213 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day: [][]int[][] = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 dis- Underfull \hbox (badness 10000) in paragraph at lines 2213--2213 \T1/ptm/m/it/10 0.0013698630136986301\T1/ptm/m/n/10 , \T1/ptm/m/it/10 killing_e ff: Underfull \hbox (badness 10000) in paragraph at lines 2213--2213 \T1/ptm/m/it/10 0.0006849315068493151\T1/ptm/m/n/10 , \T1/ptm/m/it/10 iv_name: Underfull \hbox (badness 10000) in paragraph at lines 2213--2213 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Us-ageDe-pen-de ntBed-net\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2213--2213 \T1/ptm/m/it/10 sonal_dependence: [][]dict[][] = None\T1/ptm/m/n/10 , [38] [39] Underfull \hbox (badness 10000) in paragraph at lines 2412--2412 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2412--2412 \T1/ptm/m/it/10 start_day\T1/ptm/m/n/10 , \T1/ptm/m/it/10 file- [40] Underfull \hbox (badness 10000) in paragraph at lines 2427--2427 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2427--2427 \T1/ptm/m/it/10 start_day: [][]int[][] = Underfull \hbox (badness 10000) in paragraph at lines 2427--2427 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 du-ra-tion_days: Underfull \hbox (badness 10000) in paragraph at lines 2427--2427 [][]\T1/ptm/m/it/10 int[][] = 365000\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2427--2427 \T1/ptm/m/it/10 clude_vector_state: Underfull \hbox (badness 10000) in paragraph at lines 2427--2427 [][]\T1/ptm/m/it/10 int[][] = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 strat- Underfull \hbox (badness 10000) in paragraph at lines 2427--2427 \T1/ptm/m/it/10 ify_by: [][]str[][] = Underfull \hbox (badness 10000) in paragraph at lines 2427--2427 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 GENOME\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ ptm/m/it/10 com- Overfull \hbox (9.02399pt too wide) in paragraph at lines 2427--2427 \T1/ptm/m/it/10 bine_similar_genomes: Underfull \hbox (badness 10000) in paragraph at lines 2427--2427 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 spe- Overfull \hbox (102.76315pt too wide) in paragraph at lines 2427--2427 \T1/ptm/m/it/10 cific_genome_combinations_for_stratification: Underfull \hbox (badness 10000) in paragraph at lines 2427--2427 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 al- Overfull \hbox (64.54318pt too wide) in paragraph at lines 2427--2427 \T1/ptm/m/it/10 lele_combinations_for_stratification: Overfull \hbox (2.32376pt too wide) in paragraph at lines 2427--2427 \T1/ptm/m/it/10 les_for_stratification: Underfull \hbox (badness 10000) in paragraph at lines 2427--2427 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- [41] Underfull \hbox (badness 10000) in paragraph at lines 2507--2507 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2526--2526 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 6893) in paragraph at lines 2526--2526 \T1/ptm/m/it/10 = 365000\T1/ptm/m/n/10 , \T1/ptm/m/it/10 nodes: Underfull \hbox (badness 10000) in paragraph at lines 2526--2526 \T1/ptm/m/it/10 ual_property_filter: Underfull \hbox (badness 10000) in paragraph at lines 2526--2526 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , \T1/ptm/m/it/ 10 in-fec- Underfull \hbox (badness 10000) in paragraph at lines 2526--2526 \T1/ptm/m/it/10 tious-ness_bins: Underfull \hbox (badness 10000) in paragraph at lines 2526--2526 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Overfull \hbox (4.30418pt too wide) in paragraph at lines 2526--2526 \T1/ptm/m/it/10 max_number_reports: Underfull \hbox (badness 7291) in paragraph at lines 2526--2526 [][]\T1/ptm/m/it/10 int[][] = 100\T1/ptm/m/n/10 , \T1/ptm/m/it/10 par-a- Underfull \hbox (badness 10000) in paragraph at lines 2526--2526 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- [42] Underfull \hbox (badness 10000) in paragraph at lines 2587--2587 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i- Underfull \hbox (badness 10000) in paragraph at lines 2603--2603 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2603--2603 \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2603--2603 \T1/ptm/m/it/10 start_day: Underfull \hbox (badness 10000) in paragraph at lines 2603--2603 \T1/ptm/m/it/10 ra-tion_days: Underfull \hbox (badness 10000) in paragraph at lines 2603--2603 \T1/ptm/m/it/10 nodes: Overfull \hbox (3.20416pt too wide) in paragraph at lines 2603--2603 \T1/ptm/m/it/10 pretty_format: Overfull \hbox (15.2441pt too wide) in paragraph at lines 2603--2603 \T1/ptm/m/it/10 port_description: [43] Underfull \hbox (badness 10000) in paragraph at lines 2643--2643 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2643--2643 \T1/ptm/m/it/10 man- Underfull \hbox (badness 10000) in paragraph at lines 2643--2643 \T1/ptm/m/it/10 i-fest\T1/ptm/m/n/10 , Overfull \hbox (10.35448pt too wide) in paragraph at lines 2643--2643 \T1/ptm/m/it/10 start_day: Overfull \hbox (6.45485pt too wide) in paragraph at lines 2643--2643 \T1/ptm/m/it/10 end_day: Underfull \hbox (badness 10000) in paragraph at lines 2643--2643 [][]\T1/ptm/m/it/10 int[][] = Overfull \hbox (1.74501pt too wide) in paragraph at lines 2643--2643 \T1/ptm/m/it/10 365000\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2643--2643 \T1/ptm/m/it/10 re-port- Overfull \hbox (21.46431pt too wide) in paragraph at lines 2643--2643 \T1/ptm/m/it/10 ing_interval: Underfull \hbox (badness 10000) in paragraph at lines 2643--2643 [][]\T1/ptm/m/it/10 int[][] = Overfull \hbox (1.74501pt too wide) in paragraph at lines 2643--2643 \T1/ptm/m/it/10 365000\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2643--2643 \T1/ptm/m/it/10 nodes: Underfull \hbox (badness 10000) in paragraph at lines 2643--2643 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2643--2643 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2643--2643 \T1/ptm/m/it/10 re- Overfull \hbox (28.1245pt too wide) in paragraph at lines 2643--2643 \T1/ptm/m/it/10 port_filename: Underfull \hbox (badness 10000) in paragraph at lines 2643--2643 [][]\T1/ptm/m/it/10 str[][] = Underfull \hbox (badness 10000) in paragraph at lines 2643--2643 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Spa- Underfull \hbox (badness 10000) in paragraph at lines 2643--2643 \T1/ptm/m/it/10 tial-Re- Underfull \hbox (badness 10000) in paragraph at lines 2643--2643 \T1/ptm/m/it/10 port- Underfull \hbox (badness 10000) in paragraph at lines 2643--2643 \T1/ptm/m/it/10 Malar- Underfull \hbox (badness 10000) in paragraph at lines 2643--2643 \T1/ptm/m/it/10 i-aFil- Overfull \hbox (13.23434pt too wide) in paragraph at lines 2643--2643 \T1/ptm/m/it/10 tered.json\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2643--2643 \T1/ptm/m/it/10 spa- Overfull \hbox (56.87419pt too wide) in paragraph at lines 2643--2643 \T1/ptm/m/it/10 tial_output_channels: Underfull \hbox (badness 10000) in paragraph at lines 2643--2643 [][]\T1/ptm/m/it/10 list[][] = [44] Underfull \hbox (badness 10000) in paragraph at lines 2671--2679 \T1/ptm/m/n/10 ^^PBlood_Smear_Gametocyte_Prevalence^^Q, ^^PBlood_Smear_Parasite _Prevalence^^Q, Underfull \hbox (badness 10000) in paragraph at lines 2671--2679 \T1/ptm/m/n/10 ^^PCam-paign_Cost^^Q, ^^PDaily_Bites_Per_Human^^Q, ^^PDaily_EIR^ ^Q, ^^PDis-ease_Deaths^^Q, Underfull \hbox (badness 10000) in paragraph at lines 2671--2679 \T1/ptm/m/n/10 ^^PNew_Reported_Infections^^Q, ^^PNew_Severe_Cases^^Q, ^^PPCR_Ga metocyte_Prevalence^^Q, Underfull \hbox (badness 10000) in paragraph at lines 2671--2679 \T1/ptm/m/n/10 ^^PPCR_Parasite_Prevalence^^Q, ^^PPfHRP2_Prevalence^^Q, ^^PPop-u -la-tion^^Q, ^^PPreva- Underfull \hbox (badness 10000) in paragraph at lines 2671--2679 \T1/ptm/m/n/10 lence^^Q, ^^PRain-fall^^Q, ^^PRel-a-tive_Humidity^^Q, ^^PTrue_Pr evalence^^Q De-faults: Underfull \hbox (badness 10000) in paragraph at lines 2692--2692 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2692--2692 \T1/ptm/m/it/10 start_day: [][]int[][] = Underfull \hbox (badness 10000) in paragraph at lines 2692--2692 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 du-ra-tion_days: Underfull \hbox (badness 10000) in paragraph at lines 2692--2692 [][]\T1/ptm/m/it/10 int[][] = 365000\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2692--2692 \T1/ptm/m/it/10 event_trigger_list: Underfull \hbox (badness 6893) in paragraph at lines 2692--2692 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 nodes: Underfull \hbox (badness 10000) in paragraph at lines 2692--2692 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 2692--2692 \T1/ptm/m/it/10 port_description: Underfull \hbox (badness 10000) in paragraph at lines 2713--2713 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 end_day: Underfull \hbox (badness 10000) in paragraph at lines 2713--2713 [][]\T1/ptm/m/it/10 int[][] = 365000\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in- Underfull \hbox (badness 10000) in paragraph at lines 2713--2713 \T1/ptm/m/it/10 clude_infection_table: Underfull \hbox (badness 10000) in paragraph at lines 2713--2713 [][]\T1/ptm/m/it/10 int[][] = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in- [45] Underfull \hbox (badness 10000) in paragraph at lines 2775--2775 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 7168) in paragraph at lines 2775--2775 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 du-ra-tion_days: Underfull \hbox (badness 10000) in paragraph at lines 2775--2775 [][]\T1/ptm/m/it/10 int[][] = 365000\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2775--2775 \T1/ptm/m/it/10 re-port-ing_interval: Underfull \hbox (badness 10000) in paragraph at lines 2775--2775 [][]\T1/ptm/m/it/10 int[][] = 365000\T1/ptm/m/n/10 , Overfull \hbox (10.30418pt too wide) in paragraph at lines 2775--2775 \T1/ptm/m/it/10 max_number_reports: Underfull \hbox (badness 10000) in paragraph at lines 2775--2775 [][]\T1/ptm/m/it/10 int[][] = 365000\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2775--2775 \T1/ptm/m/it/10 nodes: [][]list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2775--2775 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 age_bins: Underfull \hbox (badness 10000) in paragraph at lines 2775--2775 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2775--2775 \T1/ptm/m/it/10 pretty_format: Underfull \hbox (badness 10000) in paragraph at lines 2775--2775 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 2775--2775 \T1/ptm/m/it/10 port_description: [46] Underfull \hbox (badness 10000) in paragraph at lines 2825--2825 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 7168) in paragraph at lines 2825--2825 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 du-ra-tion_days: Underfull \hbox (badness 10000) in paragraph at lines 2825--2825 [][]\T1/ptm/m/it/10 int[][] = 365000\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2825--2825 \T1/ptm/m/it/10 event_trigger_list: Underfull \hbox (badness 10000) in paragraph at lines 2825--2825 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Overfull \hbox (10.30418pt too wide) in paragraph at lines 2825--2825 \T1/ptm/m/it/10 max_number_reports: Underfull \hbox (badness 10000) in paragraph at lines 2825--2825 [][]\T1/ptm/m/it/10 int[][] = 365000\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2825--2825 \T1/ptm/m/it/10 nodes: [][]list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2825--2825 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in-di-vid- Overfull \hbox (20.78384pt too wide) in paragraph at lines 2825--2825 \T1/ptm/m/it/10 ual_property_to_collect: Underfull \hbox (badness 10000) in paragraph at lines 2825--2825 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2825--2825 \T1/ptm/m/it/10 pretty_format: Underfull \hbox (badness 10000) in paragraph at lines 2825--2825 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 2825--2825 \T1/ptm/m/it/10 port_description: [47] Underfull \hbox (badness 10000) in paragraph at lines 2926--2926 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2926--2926 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in-di-vid- Overfull \hbox (26.78384pt too wide) in paragraph at lines 2926--2926 \T1/ptm/m/it/10 ual_property_to_collect: Underfull \hbox (badness 6526) in paragraph at lines 2926--2926 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , \T1/ptm/m/it/ 10 strat- Underfull \hbox (badness 10000) in paragraph at lines 2926--2926 \T1/ptm/m/it/10 ify_by_gender: Overfull \hbox (47.85474pt too wide) in paragraph at lines 2960--2960 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , Overfull \hbox (49.79494pt too wide) in paragraph at lines 2960--2960 \T1/ptm/m/it/10 man- Overfull \hbox (35.35486pt too wide) in paragraph at lines 2960--2960 \T1/ptm/m/it/10 i- Overfull \hbox (45.63463pt too wide) in paragraph at lines 2960--2960 \T1/ptm/m/it/10 fest\T1/ptm/m/n/10 , Overfull \hbox (46.26491pt too wide) in paragraph at lines 2960--2960 \T1/ptm/m/it/10 bar- Overfull \hbox (55.34474pt too wide) in paragraph at lines 2960--2960 \T1/ptm/m/it/10 codes: Overfull \hbox (41.47458pt too wide) in paragraph at lines 2960--2960 [][]\T1/ptm/m/it/10 list[][] Overfull \hbox (35.99501pt too wide) in paragraph at lines 2960--2960 \T1/ptm/m/it/10 = Overfull \hbox (52.85487pt too wide) in paragraph at lines 2960--2960 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (122.7736pt too wide) in paragraph at lines 2960--2960 \T1/ptm/m/it/10 drug_resistant_strings: Overfull \hbox (41.47458pt too wide) in paragraph at lines 2960--2960 [][]\T1/ptm/m/it/10 list[][] Overfull \hbox (35.99501pt too wide) in paragraph at lines 2960--2960 \T1/ptm/m/it/10 = Overfull \hbox (52.85487pt too wide) in paragraph at lines 2960--2960 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (148.3231pt too wide) in paragraph at lines 2960--2960 \T1/ptm/m/it/10 drug_resistant_statistic_type: Overfull \hbox (39.80469pt too wide) in paragraph at lines 2960--2960 [][]\T1/ptm/m/it/10 str[][] Overfull \hbox (35.99501pt too wide) in paragraph at lines 2960--2960 \T1/ptm/m/it/10 = Overfull \hbox (240.52356pt too wide) in paragraph at lines 2960--2960 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 NUM_PEOPLE_WITH_RESISTANT_INFECTION\TS1/ptm/m /it/10 '\T1/ptm/m/n/10 , Overfull \hbox (68.48471pt too wide) in paragraph at lines 2960--2960 \T1/ptm/m/it/10 age_bins: Overfull \hbox (41.47458pt too wide) in paragraph at lines 2960--2960 [][]\T1/ptm/m/it/10 list[][] Overfull \hbox (35.99501pt too wide) in paragraph at lines 2960--2960 \T1/ptm/m/it/10 = Overfull \hbox (52.85487pt too wide) in paragraph at lines 2960--2960 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (40.35486pt too wide) in paragraph at lines 2960--2960 \T1/ptm/m/it/10 in- Overfull \hbox (40.35486pt too wide) in paragraph at lines 2960--2960 \T1/ptm/m/it/10 di- Overfull \hbox (44.7948pt too wide) in paragraph at lines 2960--2960 \T1/ptm/m/it/10 vid- Overfull \hbox (128.78384pt too wide) in paragraph at lines 2960--2960 \T1/ptm/m/it/10 ual_property_to_collect: Overfull \hbox (39.80469pt too wide) in paragraph at lines 2960--2960 [][]\T1/ptm/m/it/10 str[][] Overfull \hbox (35.99501pt too wide) in paragraph at lines 2960--2960 \T1/ptm/m/it/10 = Overfull \hbox (36.0248pt too wide) in paragraph at lines 2960--2960 \TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , Overfull \hbox (50.76463pt too wide) in paragraph at lines 2960--2960 \T1/ptm/m/it/10 strat- Overfull \hbox (89.68442pt too wide) in paragraph at lines 2960--2960 \T1/ptm/m/it/10 ify_by_gender: Overfull \hbox (39.8048pt too wide) in paragraph at lines 2960--2960 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (35.99501pt too wide) in paragraph at lines 2960--2960 \T1/ptm/m/it/10 = Overfull \hbox (40.24501pt too wide) in paragraph at lines 2960--2960 \T1/ptm/m/it/10 1\T1/pcr/m/n/10 ) [48] [49] Underfull \hbox (badness 10000) in paragraph at lines 3011--3011 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Overfull \hbox (17.85474pt too wide) in paragraph at lines 3040--3040 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , Overfull \hbox (19.79494pt too wide) in paragraph at lines 3040--3040 \T1/ptm/m/it/10 man- Overfull \hbox (5.35486pt too wide) in paragraph at lines 3040--3040 \T1/ptm/m/it/10 i- Overfull \hbox (15.63463pt too wide) in paragraph at lines 3040--3040 \T1/ptm/m/it/10 fest\T1/ptm/m/n/10 , Overfull \hbox (48.68404pt too wide) in paragraph at lines 3040--3040 \T1/ptm/m/it/10 species_list: Overfull \hbox (11.47458pt too wide) in paragraph at lines 3040--3040 [][]\T1/ptm/m/it/10 list[][] Overfull \hbox (5.99501pt too wide) in paragraph at lines 3040--3040 \T1/ptm/m/it/10 = Overfull \hbox (22.85487pt too wide) in paragraph at lines 3040--3040 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (20.76463pt too wide) in paragraph at lines 3040--3040 \T1/ptm/m/it/10 strat- Overfull \hbox (60.89413pt too wide) in paragraph at lines 3040--3040 \T1/ptm/m/it/10 ify_by_species: Overfull \hbox (9.8048pt too wide) in paragraph at lines 3040--3040 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (5.99501pt too wide) in paragraph at lines 3040--3040 \T1/ptm/m/it/10 = Overfull \hbox (6.74501pt too wide) in paragraph at lines 3040--3040 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , Overfull \hbox (10.35486pt too wide) in paragraph at lines 3040--3040 \T1/ptm/m/it/10 in- Overfull \hbox (70.75449pt too wide) in paragraph at lines 3040--3040 \T1/ptm/m/it/10 clude_wolbachia: Overfull \hbox (9.8048pt too wide) in paragraph at lines 3040--3040 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (5.99501pt too wide) in paragraph at lines 3040--3040 \T1/ptm/m/it/10 = Overfull \hbox (6.74501pt too wide) in paragraph at lines 3040--3040 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , Overfull \hbox (10.35486pt too wide) in paragraph at lines 3040--3040 \T1/ptm/m/it/10 in- Overfull \hbox (65.80426pt too wide) in paragraph at lines 3040--3040 \T1/ptm/m/it/10 clude_gestation: Overfull \hbox (9.8048pt too wide) in paragraph at lines 3040--3040 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (5.99501pt too wide) in paragraph at lines 3040--3040 \T1/ptm/m/it/10 = Overfull \hbox (6.74501pt too wide) in paragraph at lines 3040--3040 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , Overfull \hbox (16.26491pt too wide) in paragraph at lines 3040--3040 \T1/ptm/m/it/10 bar- Overfull \hbox (25.34474pt too wide) in paragraph at lines 3040--3040 \T1/ptm/m/it/10 codes: Overfull \hbox (11.47458pt too wide) in paragraph at lines 3040--3040 [][]\T1/ptm/m/it/10 list[][] Overfull \hbox (5.99501pt too wide) in paragraph at lines 3040--3040 \T1/ptm/m/it/10 = Overfull \hbox (26.35487pt too wide) in paragraph at lines 3040--3040 \T1/ptm/m/it/10 None\T1/pcr/m/n/10 ) [50] Underfull \hbox (badness 10000) in paragraph at lines 3080--3080 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pa-ram-e-ters: Underfull \hbox (badness 10000) in paragraph at lines 3080--3080 \T1/ptm/m/it/10 dict = \T1/ptm/m/n/10 , Underfull \hbox (badness 6348) in paragraph at lines 3080--3080 \T1/ptm/m/it/10 En-abled: bool = Underfull \hbox (badness 10000) in paragraph at lines 3128--3128 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pa-ram-e-ters: Underfull \hbox (badness 10000) in paragraph at lines 3128--3128 \T1/ptm/m/it/10 dict = \T1/ptm/m/n/10 , Underfull \hbox (badness 6348) in paragraph at lines 3128--3128 \T1/ptm/m/it/10 En-abled: bool = [51] Underfull \hbox (badness 10000) in paragraph at lines 3152--3152 []\T1/ptm/m/it/10 class_name: Underfull \hbox (badness 10000) in paragraph at lines 3152--3152 \T1/ptm/m/it/10 = \T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3152--3152 \T1/ptm/m/it/10 En-abled: Overfull \hbox (0.5943pt too wide) in paragraph at lines 3152--3152 \T1/ptm/m/it/10 Pretty_Format: Overfull \hbox (55.2345pt too wide) in paragraph at lines 3177--3177 []\T1/ptm/m/it/10 class_name: Overfull \hbox (15.80469pt too wide) in paragraph at lines 3177--3177 \T1/ptm/m/it/10 str Overfull \hbox (11.99501pt too wide) in paragraph at lines 3177--3177 \T1/ptm/m/it/10 = Overfull \hbox (28.85487pt too wide) in paragraph at lines 3177--3177 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (18.57497pt too wide) in paragraph at lines 3177--3177 \T1/ptm/m/it/10 pa- Overfull \hbox (24.53493pt too wide) in paragraph at lines 3177--3177 \T1/ptm/m/it/10 ram- Overfull \hbox (13.01491pt too wide) in paragraph at lines 3177--3177 \T1/ptm/m/it/10 e- Overfull \hbox (23.4746pt too wide) in paragraph at lines 3177--3177 \T1/ptm/m/it/10 ters: Overfull \hbox (20.24474pt too wide) in paragraph at lines 3177--3177 \T1/ptm/m/it/10 dict Overfull \hbox (11.99501pt too wide) in paragraph at lines 3177--3177 \T1/ptm/m/it/10 = Overfull \hbox (27.5448pt too wide) in paragraph at lines 3177--3177 \T1/ptm/m/it/10 \T1/ptm/m/n/10 , Overfull \hbox (19.68495pt too wide) in paragraph at lines 3177--3177 \T1/ptm/m/it/10 En- Overfull \hbox (30.7948pt too wide) in paragraph at lines 3177--3177 \T1/ptm/m/it/10 abled: Overfull \hbox (23.0249pt too wide) in paragraph at lines 3177--3177 \T1/ptm/m/it/10 bool Overfull \hbox (11.99501pt too wide) in paragraph at lines 3177--3177 \T1/ptm/m/it/10 = Overfull \hbox (26.08485pt too wide) in paragraph at lines 3177--3177 \T1/ptm/m/it/10 True\T1/ptm/m/n/10 , Overfull \hbox (66.5943pt too wide) in paragraph at lines 3177--3177 \T1/ptm/m/it/10 Pretty_Format: Overfull \hbox (23.0249pt too wide) in paragraph at lines 3177--3177 \T1/ptm/m/it/10 bool Overfull \hbox (11.99501pt too wide) in paragraph at lines 3177--3177 \T1/ptm/m/it/10 = Overfull \hbox (29.58485pt too wide) in paragraph at lines 3177--3177 \T1/ptm/m/it/10 True\T1/pcr/m/n/10 ) Underfull \hbox (badness 5832) in paragraph at lines 3180--3185 \T1/ptm/m/n/10 The re-port can only be used when the sim-u-la-tion setup pa-ram -e-ter \T1/ptm/b/n/10 Malaria_Model \T1/ptm/m/n/10 is set to Overfull \hbox (13.2345pt too wide) in paragraph at lines 3202--3202 []\T1/ptm/m/it/10 class_name: Underfull \hbox (badness 10000) in paragraph at lines 3202--3202 \T1/ptm/m/it/10 str = Underfull \hbox (badness 10000) in paragraph at lines 3202--3202 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3202--3202 \T1/ptm/m/it/10 pa-ram-e- Underfull \hbox (badness 10000) in paragraph at lines 3202--3202 \T1/ptm/m/it/10 tory>\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3202--3202 \T1/ptm/m/it/10 En-abled: Underfull \hbox (badness 10000) in paragraph at lines 3202--3202 \T1/ptm/m/it/10 bool Underfull \hbox (badness 10000) in paragraph at lines 3202--3202 \T1/ptm/m/it/10 = True\T1/ptm/m/n/10 , Overfull \hbox (24.5943pt too wide) in paragraph at lines 3202--3202 \T1/ptm/m/it/10 Pretty_Format: Underfull \hbox (badness 10000) in paragraph at lines 3202--3202 \T1/ptm/m/it/10 bool = [52] Underfull \hbox (badness 10000) in paragraph at lines 3227--3227 []\T1/ptm/m/it/10 class_name: str = Underfull \hbox (badness 10000) in paragraph at lines 3227--3227 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pa-ram-e-ters: Underfull \hbox (badness 6236) in paragraph at lines 3275--3275 []\T1/ptm/m/it/10 class_name: str = Underfull \hbox (badness 10000) in paragraph at lines 3275--3275 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pa-ram-e-ters: Underfull \hbox (badness 10000) in paragraph at lines 3275--3275 \T1/ptm/m/it/10 dict = \T1/ptm/m/n/10 , [53] Underfull \hbox (badness 10000) in paragraph at lines 3299--3299 []\T1/ptm/m/it/10 class_name: str Underfull \hbox (badness 7291) in paragraph at lines 3299--3299 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pa-ram- Underfull \hbox (badness 10000) in paragraph at lines 3299--3299 \T1/ptm/m/it/10 e-ters: dict = Underfull \hbox (badness 10000) in paragraph at lines 3299--3299 \T1/ptm/m/it/10 \T1/ptm/m/n/10 , \T1/ptm/m/it/10 En- Underfull \hbox (badness 10000) in paragraph at lines 3299--3299 \T1/ptm/m/it/10 Pretty_Format: Underfull \hbox (badness 10000) in paragraph at lines 3328--3328 []\T1/ptm/m/it/10 class_name: Underfull \hbox (badness 10000) in paragraph at lines 3328--3328 \T1/ptm/m/it/10 pa-ram-e- Underfull \hbox (badness 10000) in paragraph at lines 3328--3328 \T1/ptm/m/it/10 \T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3328--3328 \T1/ptm/m/it/10 En-abled: Overfull \hbox (6.5943pt too wide) in paragraph at lines 3328--3328 \T1/ptm/m/it/10 Pretty_Format: Overfull \hbox (13.2345pt too wide) in paragraph at lines 3372--3372 []\T1/ptm/m/it/10 class_name: Underfull \hbox (badness 10000) in paragraph at lines 3372--3372 \T1/ptm/m/it/10 str = Underfull \hbox (badness 10000) in paragraph at lines 3372--3372 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3372--3372 \T1/ptm/m/it/10 pa-ram-e- Underfull \hbox (badness 10000) in paragraph at lines 3372--3372 \T1/ptm/m/it/10 tory>\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3372--3372 \T1/ptm/m/it/10 En-abled: Underfull \hbox (badness 10000) in paragraph at lines 3372--3372 \T1/ptm/m/it/10 bool Underfull \hbox (badness 10000) in paragraph at lines 3372--3372 \T1/ptm/m/it/10 = True\T1/ptm/m/n/10 , Overfull \hbox (24.5943pt too wide) in paragraph at lines 3372--3372 \T1/ptm/m/it/10 Pretty_Format: Underfull \hbox (badness 10000) in paragraph at lines 3372--3372 \T1/ptm/m/it/10 bool = [54] Underfull \hbox (badness 10000) in paragraph at lines 3396--3396 []\T1/ptm/m/it/10 class_name: Underfull \hbox (badness 10000) in paragraph at lines 3396--3396 \T1/ptm/m/it/10 str = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3396--3396 \T1/ptm/m/it/10 pa-ram-e-ters: Underfull \hbox (badness 10000) in paragraph at lines 3396--3396 \T1/ptm/m/it/10 dict = \T1/ptm/m/n/10 , \T1/ptm/m/it/10 En-abled: Underfull \hbox (badness 10000) in paragraph at lines 3396--3396 \T1/ptm/m/it/10 bool = True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3396--3396 \T1/ptm/m/it/10 Pretty_Format: Overfull \hbox (67.2345pt too wide) in paragraph at lines 3419--3419 []\T1/ptm/m/it/10 class_name: Overfull \hbox (27.80469pt too wide) in paragraph at lines 3419--3419 \T1/ptm/m/it/10 str Overfull \hbox (23.99501pt too wide) in paragraph at lines 3419--3419 \T1/ptm/m/it/10 = Overfull \hbox (40.85487pt too wide) in paragraph at lines 3419--3419 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (30.57497pt too wide) in paragraph at lines 3419--3419 \T1/ptm/m/it/10 pa- Overfull \hbox (36.53493pt too wide) in paragraph at lines 3419--3419 \T1/ptm/m/it/10 ram- Overfull \hbox (25.01491pt too wide) in paragraph at lines 3419--3419 \T1/ptm/m/it/10 e- Overfull \hbox (35.4746pt too wide) in paragraph at lines 3419--3419 \T1/ptm/m/it/10 ters: Overfull \hbox (32.24474pt too wide) in paragraph at lines 3419--3419 \T1/ptm/m/it/10 dict Overfull \hbox (23.99501pt too wide) in paragraph at lines 3419--3419 \T1/ptm/m/it/10 = Overfull \hbox (39.5448pt too wide) in paragraph at lines 3419--3419 \T1/ptm/m/it/10 \T1/ptm/m/n/10 , Overfull \hbox (31.68495pt too wide) in paragraph at lines 3419--3419 \T1/ptm/m/it/10 En- Overfull \hbox (42.7948pt too wide) in paragraph at lines 3419--3419 \T1/ptm/m/it/10 abled: Overfull \hbox (35.0249pt too wide) in paragraph at lines 3419--3419 \T1/ptm/m/it/10 bool Overfull \hbox (23.99501pt too wide) in paragraph at lines 3419--3419 \T1/ptm/m/it/10 = Overfull \hbox (38.08485pt too wide) in paragraph at lines 3419--3419 \T1/ptm/m/it/10 True\T1/ptm/m/n/10 , Overfull \hbox (78.5943pt too wide) in paragraph at lines 3419--3419 \T1/ptm/m/it/10 Pretty_Format: Overfull \hbox (35.0249pt too wide) in paragraph at lines 3419--3419 \T1/ptm/m/it/10 bool Overfull \hbox (23.99501pt too wide) in paragraph at lines 3419--3419 \T1/ptm/m/it/10 = Overfull \hbox (41.58485pt too wide) in paragraph at lines 3419--3419 \T1/ptm/m/it/10 True\T1/pcr/m/n/10 ) [55] Underfull \hbox (badness 10000) in paragraph at lines 3447--3447 []\T1/ptm/m/it/10 class_name: str Underfull \hbox (badness 7291) in paragraph at lines 3447--3447 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pa-ram- Underfull \hbox (badness 10000) in paragraph at lines 3447--3447 \T1/ptm/m/it/10 e-ters: dict = Underfull \hbox (badness 10000) in paragraph at lines 3447--3447 \T1/ptm/m/it/10 \T1/ptm/m/n/10 , \T1/ptm/m/it/10 En- Underfull \hbox (badness 10000) in paragraph at lines 3447--3447 \T1/ptm/m/it/10 Pretty_Format: Overfull \hbox (37.2345pt too wide) in paragraph at lines 3471--3471 []\T1/ptm/m/it/10 class_name: Underfull \hbox (badness 10000) in paragraph at lines 3471--3471 \T1/ptm/m/it/10 str Underfull \hbox (badness 10000) in paragraph at lines 3471--3471 \T1/ptm/m/it/10 = Overfull \hbox (10.85487pt too wide) in paragraph at lines 3471--3471 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (0.57497pt too wide) in paragraph at lines 3471--3471 \T1/ptm/m/it/10 pa- Overfull \hbox (6.53493pt too wide) in paragraph at lines 3471--3471 \T1/ptm/m/it/10 ram- Underfull \hbox (badness 10000) in paragraph at lines 3471--3471 \T1/ptm/m/it/10 e- Overfull \hbox (5.4746pt too wide) in paragraph at lines 3471--3471 \T1/ptm/m/it/10 ters: Overfull \hbox (2.24474pt too wide) in paragraph at lines 3471--3471 \T1/ptm/m/it/10 dict Underfull \hbox (badness 10000) in paragraph at lines 3471--3471 \T1/ptm/m/it/10 = Overfull \hbox (9.5448pt too wide) in paragraph at lines 3471--3471 \T1/ptm/m/it/10 \T1/ptm/m/n/10 , Overfull \hbox (1.68495pt too wide) in paragraph at lines 3471--3471 \T1/ptm/m/it/10 En- Overfull \hbox (12.7948pt too wide) in paragraph at lines 3471--3471 \T1/ptm/m/it/10 abled: Overfull \hbox (5.0249pt too wide) in paragraph at lines 3471--3471 \T1/ptm/m/it/10 bool Underfull \hbox (badness 10000) in paragraph at lines 3471--3471 \T1/ptm/m/it/10 = Overfull \hbox (8.08485pt too wide) in paragraph at lines 3471--3471 \T1/ptm/m/it/10 True\T1/ptm/m/n/10 , Overfull \hbox (48.5943pt too wide) in paragraph at lines 3471--3471 \T1/ptm/m/it/10 Pretty_Format: Overfull \hbox (5.0249pt too wide) in paragraph at lines 3471--3471 \T1/ptm/m/it/10 bool Underfull \hbox (badness 10000) in paragraph at lines 3471--3471 \T1/ptm/m/it/10 = Overfull \hbox (11.58485pt too wide) in paragraph at lines 3471--3471 \T1/ptm/m/it/10 True\T1/pcr/m/n/10 ) [56] Underfull \hbox (badness 10000) in paragraph at lines 3524--3524 []\T1/ptm/m/it/10 config\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/ 10 , Overfull \hbox (24.52415pt too wide) in paragraph at lines 3524--3524 \T1/ptm/m/it/10 var_gene_randomness_type: Underfull \hbox (badness 10000) in paragraph at lines 3524--3524 [][]\T1/ptm/m/it/10 str[][] = Underfull \hbox (badness 10000) in paragraph at lines 3525--3527 \T1/ptm/m/n/10 Sets up the de-fault pa-ram-e-ters for par-a-site ge-net-ics sim -u-la-tions Malaria_Model = [57] [58] [59] [60] Underfull \hbox (badness 10000) in paragraph at lines 3907--3907 []\T1/ptm/m/it/10 config\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/ 10 , \T1/ptm/m/it/10 in-sec- Underfull \hbox (badness 6675) in paragraph at lines 3907--3907 \T1/ptm/m/it/10 ti-cide_name: [][]str[][] = \TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , Underfull \hbox (badness 5939) in paragraph at lines 3907--3907 \T1/ptm/m/it/10 species: [][]str[][] = \TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , \T1/ ptm/m/it/10 al- Underfull \hbox (badness 6047) in paragraph at lines 3907--3907 \T1/ptm/m/it/10 block-ing: [][]float[][] = 1.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3907--3907 \T1/ptm/m/it/10 pelling: [][]float[][] = 1.0\T1/ptm/m/n/10 , [61] [62] [63] [64] Overfull \hbox (54.6225pt too wide) in paragraph at lines 4077--4078 []\T1/pcr/m/n/10 emodpy_malaria.demographics.MalariaDemographics\T1/ptm/m/n/10 , Overfull \hbox (12.6225pt too wide) in paragraph at lines 4081--4082 []\T1/pcr/m/n/10 emodpy_malaria.interventions.diag_survey\T1/ptm/m/n/10 , Overfull \hbox (24.6225pt too wide) in paragraph at lines 4083--4084 []\T1/pcr/m/n/10 emodpy_malaria.interventions.drug_campaign\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4084--4085 []\T1/pcr/m/n/10 emodpy_malaria.interventions.inputeir\T1/ptm/m/n/10 , Overfull \hbox (6.6225pt too wide) in paragraph at lines 4086--4087 []\T1/pcr/m/n/10 emodpy_malaria.interventions.ivermectin\T1/ptm/m/n/10 , Overfull \hbox (36.6225pt too wide) in paragraph at lines 4087--4088 []\T1/pcr/m/n/10 emodpy_malaria.interventions.mosquitorelease\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4088--4089 []\T1/pcr/m/n/10 emodpy_malaria.interventions.outbreak\T1/ptm/m/n/10 , Overfull \hbox (36.6225pt too wide) in paragraph at lines 4089--4090 []\T1/pcr/m/n/10 emodpy_malaria.interventions.outdoorrestkill\T1/ptm/m/n/10 , Overfull \hbox (24.6225pt too wide) in paragraph at lines 4090--4091 []\T1/pcr/m/n/10 emodpy_malaria.interventions.spacespraying\T1/ptm/m/n/10 , Overfull \hbox (0.6225pt too wide) in paragraph at lines 4091--4092 []\T1/pcr/m/n/10 emodpy_malaria.interventions.sugartrap\T1/ptm/m/n/10 , Overfull \hbox (48.6225pt too wide) in paragraph at lines 4092--4093 []\T1/pcr/m/n/10 emodpy_malaria.interventions.treatment_seeking\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4093--4094 []\T1/pcr/m/n/10 emodpy_malaria.interventions.udbednet\T1/ptm/m/n/10 , [65] (./institute-for-disease-modeling-emodpy-malaria.ind [66] Underfull \hbox (badness 10000) in paragraph at lines 8--10 []\T1/pcr/m/n/10 add_alleles() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 10--12 []\T1/pcr/m/n/10 add_campaign_event() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 10--12 \T1/ptm/m/it/10 emodpy_malaria.interventions.outbreak\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 12--14 []\T1/pcr/m/n/10 add_diagnostic_survey() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod -ule Underfull \hbox (badness 10000) in paragraph at lines 12--14 \T1/ptm/m/it/10 emodpy_malaria.interventions.diag_survey\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 14--16 []\T1/pcr/m/n/10 add_drug_campaign() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (4.27083pt too wide) in paragraph at lines 14--16 \T1/ptm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 16--18 []\T1/pcr/m/n/10 add_drug_resistance() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 18--20 []\T1/pcr/m/n/10 add_drug_status_report() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 20--22 []\T1/pcr/m/n/10 add_fMDA() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (4.27083pt too wide) in paragraph at lines 20--22 \T1/ptm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 24--26 []\T1/pcr/m/n/10 add_insecticide_resistance() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 i n mod-ule Underfull \hbox (badness 10000) in paragraph at lines 26--28 []\T1/pcr/m/n/10 add_insecticide_resistance() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 i n mod-ule Underfull \hbox (badness 10000) in paragraph at lines 30--32 []\T1/pcr/m/n/10 add_malaria_patient_json_report() \T1/ptm/m/n/10 (\T1/ptm/m/it /10 in Underfull \hbox (badness 10000) in paragraph at lines 32--34 []\T1/pcr/m/n/10 add_malaria_sql_report() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 34--36 []\T1/pcr/m/n/10 add_malaria_summary_report() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 i n mod-ule Underfull \hbox (badness 10000) in paragraph at lines 38--40 []\T1/pcr/m/n/10 add_malaria_transmission_report() \T1/ptm/m/n/10 (\T1/ptm/m/it /10 in Underfull \hbox (badness 10000) in paragraph at lines 40--42 []\T1/pcr/m/n/10 add_MDA() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (4.27083pt too wide) in paragraph at lines 40--42 \T1/ptm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 42--44 []\T1/pcr/m/n/10 add_MSAT() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (4.27083pt too wide) in paragraph at lines 42--44 \T1/ptm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 44--46 []\T1/pcr/m/n/10 add_mutation() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 46--48 []\T1/pcr/m/n/10 add_outbreak_individual() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in m od-ule Underfull \hbox (badness 10000) in paragraph at lines 46--48 \T1/ptm/m/it/10 emodpy_malaria.interventions.outbreak\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 48--50 \T1/ptm/m/it/10 ule emodpy_malaria.interventions.outbreak\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 50--52 \T1/ptm/m/it/10 ule emodpy_malaria.interventions.outbreak\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 52--54 []\T1/pcr/m/n/10 add_OutdoorRestKill() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 54--56 []\T1/pcr/m/n/10 add_report_event_counter() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (52.1225pt too wide) in paragraph at lines 58--60 []\T1/pcr/m/n/10 add_report_node_demographics_malaria_genetics() Underfull \hbox (badness 10000) in paragraph at lines 60--62 []\T1/pcr/m/n/10 add_report_vector_genetics() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 i n mod-ule Underfull \hbox (badness 10000) in paragraph at lines 64--66 []\T1/pcr/m/n/10 add_report_vector_stats() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in m od-ule Overfull \hbox (22.1225pt too wide) in paragraph at lines 66--68 []\T1/pcr/m/n/10 add_report_vector_stats_malaria_genetics() Underfull \hbox (badness 10000) in paragraph at lines 68--70 []\T1/pcr/m/n/10 add_rfMDA() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (4.27083pt too wide) in paragraph at lines 68--70 \T1/ptm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 70--72 []\T1/pcr/m/n/10 add_rfMSAT() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (4.27083pt too wide) in paragraph at lines 70--72 \T1/ptm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 72--74 []\T1/pcr/m/n/10 add_spatial_report_malaria_filtered() Underfull \hbox (badness 10000) in paragraph at lines 74--76 []\T1/pcr/m/n/10 add_species() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 76--78 []\T1/pcr/m/n/10 add_species() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule [67] Underfull \hbox (badness 10000) in paragraph at lines 78--80 []\T1/pcr/m/n/10 add_species_drivers() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 80--81 []\T1/pcr/m/n/10 add_trait() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 81--83 []\T1/pcr/m/n/10 add_treatment_seeking() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod -ule Overfull \hbox (13.89015pt too wide) in paragraph at lines 81--83 \T1/ptm/m/it/10 emodpy_malaria.interventions.treatment_seeking\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 83--85 []\T1/pcr/m/n/10 add_vector_habitat_report() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 85--87 []\T1/pcr/m/n/10 AntimalarialDrug() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 85--87 \T1/ptm/m/it/10 emodpy_malaria.interventions.common\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 87--89 []\T1/pcr/m/n/10 AntimalarialDrug() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 92--94 []\T1/pcr/m/n/10 BasicBednet() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 94--96 []\T1/pcr/m/n/10 Bednet() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (59.0599pt too wide) in paragraph at lines 99--101 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.MalariaImmunityReport Overfull \hbox (72.70978pt too wide) in paragraph at lines 101--103 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.MalariaPatientJSONReport Overfull \hbox (34.07018pt too wide) in paragraph at lines 103--105 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.MalariaSqlReport Overfull \hbox (59.06006pt too wide) in paragraph at lines 105--107 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.MalariaSummaryReport Overfull \hbox (79.58981pt too wide) in paragraph at lines 107--109 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.MalariaSurveyJSONAnalyzer Overfull \hbox (34.07019pt too wide) in paragraph at lines 109--111 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.ReportDrugStatus Overfull \hbox (44.06006pt too wide) in paragraph at lines 111--113 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.ReportEventCounter Overfull \hbox (93.57004pt too wide) in paragraph at lines 113--115 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.ReportHumanMigrationTracking Overfull \hbox (68.25012pt too wide) in paragraph at lines 115--117 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.ReportNodeDemographics Overfull \hbox (136.01923pt too wide) in paragraph at lines 117--119 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.ReportNodeDemographicsMalariaGenetics Overfull \hbox (125.03925pt too wide) in paragraph at lines 119--121 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.ReportSimpleMalariaTransmissionJSON Overfull \hbox (49.04977pt too wide) in paragraph at lines 121--123 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.ReportVectorGenetics Overfull \hbox (54.46992pt too wide) in paragraph at lines 123--125 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.ReportVectorMigration Overfull \hbox (33.50998pt too wide) in paragraph at lines 125--127 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.ReportVectorStats Overfull \hbox (101.27908pt too wide) in paragraph at lines 127--129 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.ReportVectorStatsMalariaGenetics Overfull \hbox (81.02942pt too wide) in paragraph at lines 129--131 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.SpatialReportMalariaFiltered Overfull \hbox (44.61995pt too wide) in paragraph at lines 131--133 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.VectorHabitatReport Underfull \hbox (badness 10000) in paragraph at lines 136--138 []\T1/pcr/m/n/10 drug_configs_from_code() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule Overfull \hbox (4.27083pt too wide) in paragraph at lines 136--138 \T1/ptm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/ptm/m/n/10 ), Overfull \hbox (52.1225pt too wide) in paragraph at lines 145--146 []\T1/pcr/m/n/10 emodpy_malaria.demographics.MalariaDemographics Overfull \hbox (10.1225pt too wide) in paragraph at lines 153--154 []\T1/pcr/m/n/10 emodpy_malaria.interventions.diag_survey Overfull \hbox (22.1225pt too wide) in paragraph at lines 157--158 []\T1/pcr/m/n/10 emodpy_malaria.interventions.drug_campaign Overfull \hbox (4.1225pt too wide) in paragraph at lines 163--164 []\T1/pcr/m/n/10 emodpy_malaria.interventions.ivermectin Overfull \hbox (34.1225pt too wide) in paragraph at lines 165--166 []\T1/pcr/m/n/10 emodpy_malaria.interventions.mosquitorelease Overfull \hbox (34.1225pt too wide) in paragraph at lines 169--170 []\T1/pcr/m/n/10 emodpy_malaria.interventions.outdoorrestkill Overfull \hbox (22.1225pt too wide) in paragraph at lines 171--172 []\T1/pcr/m/n/10 emodpy_malaria.interventions.spacespraying Overfull \hbox (46.1225pt too wide) in paragraph at lines 175--176 []\T1/pcr/m/n/10 emodpy_malaria.interventions.treatment_seeking [68] Underfull \hbox (badness 10000) in paragraph at lines 190--192 []\T1/pcr/m/n/10 fmda_cfg() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (4.27083pt too wide) in paragraph at lines 190--192 \T1/ptm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 192--194 []\T1/pcr/m/n/10 from_params() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (36.54083pt too wide) in paragraph at lines 192--194 \T1/ptm/m/it/10 emodpy_malaria.demographics.MalariaDemographics\T1/ptm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 194--196 []\T1/pcr/m/n/10 from_pop_csv() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (36.54083pt too wide) in paragraph at lines 194--196 \T1/ptm/m/it/10 emodpy_malaria.demographics.MalariaDemographics\T1/ptm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 196--198 []\T1/pcr/m/n/10 from_template_node() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ul e Overfull \hbox (36.54083pt too wide) in paragraph at lines 196--198 \T1/ptm/m/it/10 emodpy_malaria.demographics.MalariaDemographics\T1/ptm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 201--203 []\T1/pcr/m/n/10 get_drug_params() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 203--205 []\T1/pcr/m/n/10 get_file_from_http() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 205--207 []\T1/pcr/m/n/10 get_species_params() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 207--209 []\T1/pcr/m/n/10 get_species_params() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 212--214 []\T1/pcr/m/n/10 InputEIR() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 212--214 \T1/ptm/m/it/10 emodpy_malaria.interventions.inputeir\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 214--216 []\T1/pcr/m/n/10 IRSHousingModification() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 216--218 []\T1/pcr/m/n/10 Ivermectin() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 216--218 \T1/ptm/m/it/10 emodpy_malaria.interventions.ivermectin\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 221--223 []\T1/pcr/m/n/10 MalariaDemographics \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Overfull \hbox (36.54083pt too wide) in paragraph at lines 221--223 \T1/ptm/m/it/10 emodpy_malaria.demographics.MalariaDemographics\T1/ptm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 223--225 []\T1/pcr/m/n/10 MalariaDiagnostic() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 223--225 \T1/ptm/m/it/10 emodpy_malaria.interventions.common\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 225--227 []\T1/pcr/m/n/10 MalariaImmunityReport \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 227--229 []\T1/pcr/m/n/10 MalariaPatientJSONReport \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 229--231 []\T1/pcr/m/n/10 MalariaSqlReport \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 231--233 []\T1/pcr/m/n/10 MalariaSummaryReport \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 233--235 []\T1/pcr/m/n/10 MalariaSurveyJSONAnalyzer \T1/ptm/m/n/10 (\T1/ptm/m/it/10 clas s in Overfull \hbox (74.6225pt too wide) in paragraph at lines 238--239 []| \T1/pcr/m/n/10 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\T1/pcr/m/n/10 emodpy_malaria.interventions.udbednet\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 259--261 []\T1/pcr/m/n/10 MosquitoRelease() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (6.12027pt too wide) in paragraph at lines 259--261 \T1/ptm/m/it/10 emodpy_malaria.interventions.mosquitorelease\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 264--266 []\T1/pcr/m/n/10 new_intervention() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 264--266 \T1/ptm/m/it/10 emodpy_malaria.interventions.inputeir\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 266--268 []\T1/pcr/m/n/10 new_intervention_as_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 268--270 []\T1/pcr/m/n/10 new_intervention_as_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 270--272 []\T1/pcr/m/n/10 new_intervention_as_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule [69] Underfull \hbox (badness 10000) in paragraph at lines 272--274 []\T1/pcr/m/n/10 new_intervention_as_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 274--276 []\T1/pcr/m/n/10 new_intervention_as_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (6.12027pt too wide) in paragraph at lines 274--276 \T1/ptm/m/it/10 emodpy_malaria.interventions.mosquitorelease\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 276--278 []\T1/pcr/m/n/10 new_intervention_as_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 276--278 \T1/ptm/m/it/10 emodpy_malaria.interventions.spacespraying\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 278--280 []\T1/pcr/m/n/10 new_intervention_as_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 280--282 []\T1/pcr/m/n/10 new_intervention_as_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (71.0599pt too wide) in paragraph at lines 285--287 []\T1/pcr/m/n/10 parameters \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.repo rters.builtin.MalariaImmunityReport Overfull \hbox (84.70978pt too wide) in paragraph at lines 287--289 []\T1/pcr/m/n/10 parameters \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.repo rters.builtin.MalariaPatientJSONReport Overfull \hbox (46.07018pt too wide) in paragraph at lines 289--291 []\T1/pcr/m/n/10 parameters \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.repo rters.builtin.MalariaSqlReport Overfull \hbox (71.06006pt too wide) in paragraph at lines 291--293 []\T1/pcr/m/n/10 parameters \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.repo rters.builtin.MalariaSummaryReport Overfull \hbox (91.58981pt too wide) in paragraph at lines 293--295 []\T1/pcr/m/n/10 parameters \T1/ptm/m/n/10 (\T1/ptm/m/it/10 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\T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in [70] [71]) (./institute-for-disease-modeling-emodpy-malaria.aux) ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on institute-for-disease-modeling-emodpy-malaria.pdf (75 pages, 299498 bytes). 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