Read the Docs build information Build id: 717509 Project: tiledb-inc-tiledb-py Version: latest Commit: 2301f1aa5c38400d9ca0f81e98da94556295df77 Date: 2021-09-08T19:00:20.039114Z State: finished Success: False [rtd-command-info] start-time: 2021-09-08T19:00:22.005116Z, end-time: 2021-09-08T19:00:23.618779Z, duration: 1, exit-code: 0 git clone --no-single-branch --depth 50 https://github.com/TileDB-Inc/TileDB-Py.git . Cloning into '.'... [rtd-command-info] start-time: 2021-09-08T19:00:23.924642Z, end-time: 2021-09-08T19:00:24.012702Z, duration: 0, exit-code: 0 git checkout --force origin/dev Note: checking out 'origin/dev'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at 2301f1a Return Empty Result With Empty Nonempty Domain With Multi-Index (#656) [rtd-command-info] start-time: 2021-09-08T19:00:24.120396Z, end-time: 2021-09-08T19:00:24.191733Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2021-09-08T19:00:25.241126Z, end-time: 2021-09-08T19:00:29.418882Z, duration: 4, exit-code: 0 python3.7 -mvirtualenv Using base prefix '/home/docs/.pyenv/versions/3.7.9' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2021-09-08T19:00:29.548797Z, end-time: 2021-09-08T19:00:30.731083Z, duration: 1, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip setuptools Requirement already satisfied: pip in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages (21.2.4) Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages (58.0.3) [rtd-command-info] start-time: 2021-09-08T19:00:30.916601Z, end-time: 2021-09-08T19:00:39.165363Z, duration: 8, exit-code: 0 python -m pip install --upgrade --no-cache-dir mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<2.2 Collecting mock==1.0.1 Downloading mock-1.0.1.zip (861 kB) Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.5-py2.py3-none-any.whl (3.1 MB) Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) Collecting readthedocs-sphinx-ext<2.2 Downloading readthedocs_sphinx_ext-2.1.4-py2.py3-none-any.whl (29 kB) Collecting future Downloading future-0.18.2.tar.gz (829 kB) Collecting docutils>=0.11 Downloading docutils-0.17.1-py2.py3-none-any.whl (575 kB) Collecting babel!=2.0,>=1.3 Downloading Babel-2.9.1-py2.py3-none-any.whl (8.8 MB) Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.1.0-py2.py3-none-any.whl (93 kB) Collecting packaging Downloading packaging-21.0-py3-none-any.whl (40 kB) Collecting six>=1.5 Downloading six-1.16.0-py2.py3-none-any.whl (11 kB) Collecting Jinja2>=2.3 Downloading Jinja2-3.0.1-py3-none-any.whl (133 kB) Collecting sphinxcontrib-websupport Downloading sphinxcontrib_websupport-1.2.4-py2.py3-none-any.whl (39 kB) Collecting imagesize Downloading imagesize-1.2.0-py2.py3-none-any.whl (4.8 kB) Collecting Pygments>=2.0 Downloading Pygments-2.10.0-py3-none-any.whl (1.0 MB) Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages (from sphinx<2) (58.0.3) Collecting requests>=2.0.0 Downloading requests-2.26.0-py2.py3-none-any.whl (62 kB) Collecting pytz>=2015.7 Downloading pytz-2021.1-py2.py3-none-any.whl (510 kB) Collecting MarkupSafe>=2.0 Downloading MarkupSafe-2.0.1-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (31 kB) Collecting charset-normalizer~=2.0.0 Downloading charset_normalizer-2.0.4-py3-none-any.whl (36 kB) Collecting idna<4,>=2.5 Downloading idna-3.2-py3-none-any.whl (59 kB) Collecting certifi>=2017.4.17 Downloading certifi-2021.5.30-py2.py3-none-any.whl (145 kB) Collecting urllib3<1.27,>=1.21.1 Downloading urllib3-1.26.6-py2.py3-none-any.whl (138 kB) Collecting pyparsing>=2.0.2 Downloading pyparsing-2.4.7-py2.py3-none-any.whl (67 kB) Collecting sphinxcontrib-serializinghtml Downloading sphinxcontrib_serializinghtml-1.1.5-py2.py3-none-any.whl (94 kB) Building wheels for collected packages: mock, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23772 sha256=78ea7349159a122c2ae105199a3e1c06a82a9c18b6fe22c3bf1ba72627a16a7e Stored in directory: /tmp/pip-ephem-wheel-cache-ujzsghl7/wheels/7a/94/b1/0fdc5339a5bd487a5cc15421ec200d9ba3e2aa7190e4a727f1 Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491070 sha256=7be1af9c6ea62e64258bd1dd7a2be41a52dba879c7cf933379b8254b5009adb3 Stored in directory: /tmp/pip-ephem-wheel-cache-ujzsghl7/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0 Successfully built mock future Installing collected packages: urllib3, sphinxcontrib-serializinghtml, pytz, pyparsing, MarkupSafe, idna, charset-normalizer, certifi, sphinxcontrib-websupport, snowballstemmer, six, requests, Pygments, packaging, Jinja2, imagesize, future, docutils, babel, alabaster, sphinx, commonmark, sphinx-rtd-theme, recommonmark, readthedocs-sphinx-ext, pillow, mock Successfully installed Jinja2-3.0.1 MarkupSafe-2.0.1 Pygments-2.10.0 alabaster-0.7.12 babel-2.9.1 certifi-2021.5.30 charset-normalizer-2.0.4 commonmark-0.8.1 docutils-0.17.1 future-0.18.2 idna-3.2 imagesize-1.2.0 mock-1.0.1 packaging-21.0 pillow-5.4.1 pyparsing-2.4.7 pytz-2021.1 readthedocs-sphinx-ext-2.1.4 recommonmark-0.5.0 requests-2.26.0 six-1.16.0 snowballstemmer-2.1.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-serializinghtml-1.1.5 sphinxcontrib-websupport-1.2.4 urllib3-1.26.6 [rtd-command-info] start-time: 2021-09-08T19:00:39.294911Z, end-time: 2021-09-08T19:00:45.623148Z, duration: 6, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r doc/requirements_doc.txt Ignoring contextvars: markers 'python_version < "3.7"' don't match your environment Ignoring dataclasses: markers 'python_version < "3.7"' don't match your environment Collecting cmake>=3.13 Downloading cmake-3.21.2-py2.py3-none-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (20.3 MB) Collecting numpy>=1.16.5 Downloading numpy-1.21.2-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (15.7 MB) Collecting cython>=0.27 Downloading Cython-0.29.24-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) Collecting pybind11>=2.6.2 Downloading pybind11-2.7.1-py2.py3-none-any.whl (200 kB) Requirement already satisfied: setuptools>=18.0 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages (from -r doc/../requirements_dev.txt (line 7)) (58.0.3) Collecting setuptools_scm>=1.5.4 Downloading setuptools_scm-6.3.1-py3-none-any.whl (33 kB) Requirement already satisfied: wheel>=0.30 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages (from -r doc/../requirements_dev.txt (line 9)) (0.37.0) Requirement already satisfied: packaging>=20.0 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages (from setuptools_scm>=1.5.4->-r doc/../requirements_dev.txt (line 8)) (21.0) Collecting tomli>=1.0.0 Downloading tomli-1.2.1-py3-none-any.whl (11 kB) Requirement already satisfied: pyparsing>=2.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages (from packaging>=20.0->setuptools_scm>=1.5.4->-r doc/../requirements_dev.txt (line 8)) (2.4.7) Installing collected packages: tomli, setuptools-scm, pybind11, numpy, cython, cmake Successfully installed cmake-3.21.2 cython-0.29.24 numpy-1.21.2 pybind11-2.7.1 setuptools-scm-6.3.1 tomli-1.2.1 [rtd-command-info] start-time: 2021-09-08T19:00:45.733381Z, end-time: 2021-09-08T19:11:50.453152Z, duration: 664, exit-code: 1 python ./setup.py install --force TILEDB_PATH from env: '' libtiledb_exists checking 'library_dirs': [] libtiledb_exists found: 'None' running install running bdist_egg GNU Make 4.1 Built for x86_64-pc-linux-gnu Copyright (C) 1988-2014 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. -- The C compiler identification is GNU 7.5.0 -- The CXX compiler identification is GNU 7.5.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Starting TileDB superbuild. -- Found Bzip2: /usr/lib/x86_64-linux-gnu/libbz2.so -- Could NOT find LZ4 (missing: LZ4_LIBRARIES LZ4_INCLUDE_DIR) -- Adding LZ4 as an external project -- Could NOT find Spdlog (missing: SPDLOG_INCLUDE_DIR) -- Adding Spdlog as an external project -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.11") -- Found Zlib, adding imported target: /usr/lib/x86_64-linux-gnu/libz.so -- Could NOT find Zstd (missing: ZSTD_LIBRARIES ZSTD_INCLUDE_DIR) -- Adding Zstd as an external project -- Could NOT find OpenSSL, try to set the path to OpenSSL root folder in the system variable OPENSSL_ROOT_DIR: Found unsuitable version "1.0.2n", but required is at least "1.1.0" (found /usr/lib/x86_64-linux-gnu/libcrypto.so, ) -- Adding OpenSSL as an external project -- Could NOT find CURL (missing: CURL_LIBRARY CURL_INCLUDE_DIR) -- Could NOT find Curl (missing: CURL_LIBRARIES CURL_INCLUDE_DIR) -- Adding Curl as an external project -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.1") CMake Warning at cmake/Modules/FindCurl_EP.cmake:126 (message): TileDB FindZlib_EP did not set TILEDB_ZLIB_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:96 (include) CMakeLists.txt:162 (include) -- Could NOT find AWSSDK (missing: AWSSDK_DIR) -- Could NOT find AWSSDK -- Adding AWSSDK as an external project -- Not found clang-tidy -- Not found clang-format -- was unable to find clang-format -- Found Doxygen: /usr/bin/doxygen (found version "1.8.13") found components: doxygen dot -- Install prefix is /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/dist -- Configuring done -- Generating done -- Build files have been written to: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/build [ 3%] Creating directories for 'ep_openssl' [ 3%] Creating directories for 'ep_spdlog' [ 5%] Performing download step (download, verify and extract) for 'ep_openssl' [ 7%] Performing download step (download, verify and extract) for 'ep_spdlog' -- ep_spdlog download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/build/externals/src/ep_spdlog-stamp/ep_spdlog-download-*.log [ 8%] No update step for 'ep_spdlog' [ 10%] No patch step for 'ep_spdlog' [ 12%] No configure step for 'ep_spdlog' [ 14%] No build step for 'ep_spdlog' [ 16%] No install step for 'ep_spdlog' [ 17%] Completed 'ep_spdlog' [ 17%] Built target ep_spdlog [ 19%] Creating directories for 'ep_lz4' [ 21%] Performing download step (download, verify and extract) for 'ep_lz4' -- ep_lz4 download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/build/externals/src/ep_lz4-stamp/ep_lz4-download-*.log [ 23%] No update step for 'ep_lz4' [ 25%] No patch step for 'ep_lz4' [ 26%] Performing configure step for 'ep_lz4' -- ep_lz4 configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/build/externals/src/ep_lz4-stamp/ep_lz4-configure-*.log [ 28%] Performing build step for 'ep_lz4' -- ep_openssl download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/build/externals/src/ep_openssl-stamp/ep_openssl-download-*.log [ 30%] No update step for 'ep_openssl' [ 32%] No patch step for 'ep_openssl' [ 33%] Performing configure step for 'ep_openssl' -- ep_openssl configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/build/externals/src/ep_openssl-stamp/ep_openssl-configure-*.log [ 35%] Performing build step for 'ep_openssl' -- ep_lz4 build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/build/externals/src/ep_lz4-stamp/ep_lz4-build-*.log [ 37%] Performing install step for 'ep_lz4' -- ep_lz4 install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/build/externals/src/ep_lz4-stamp/ep_lz4-install-*.log [ 39%] Completed 'ep_lz4' [ 39%] Built target ep_lz4 [ 41%] Creating directories for 'ep_zstd' [ 42%] Performing download step (download, verify and extract) for 'ep_zstd' -- ep_zstd download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/build/externals/src/ep_zstd-stamp/ep_zstd-download-*.log [ 44%] No update step for 'ep_zstd' [ 46%] No patch step for 'ep_zstd' [ 48%] Performing configure step for 'ep_zstd' -- ep_zstd configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/build/externals/src/ep_zstd-stamp/ep_zstd-configure-*.log [ 50%] Performing build step for 'ep_zstd' -- ep_zstd build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/build/externals/src/ep_zstd-stamp/ep_zstd-build-*.log [ 51%] Performing install step for 'ep_zstd' -- ep_zstd install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/build/externals/src/ep_zstd-stamp/ep_zstd-install-*.log [ 53%] Completed 'ep_zstd' [ 53%] Built target ep_zstd -- ep_openssl build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/build/externals/src/ep_openssl-stamp/ep_openssl-build-*.log [ 55%] Performing install step for 'ep_openssl' -- ep_openssl install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/build/externals/src/ep_openssl-stamp/ep_openssl-install-*.log [ 57%] Completed 'ep_openssl' [ 57%] Built target ep_openssl [ 58%] Creating directories for 'ep_curl' [ 60%] Performing download step (download, verify and extract) for 'ep_curl' -- ep_curl download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/build/externals/src/ep_curl-stamp/ep_curl-download-*.log [ 62%] No update step for 'ep_curl' [ 64%] No patch step for 'ep_curl' [ 66%] Performing configure step for 'ep_curl' -- ep_curl configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/build/externals/src/ep_curl-stamp/ep_curl-configure-*.log [ 67%] Performing build step for 'ep_curl' -- ep_curl build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/build/externals/src/ep_curl-stamp/ep_curl-build-*.log [ 69%] Performing install step for 'ep_curl' -- ep_curl install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/build/externals/src/ep_curl-stamp/ep_curl-install-*.log [ 71%] Completed 'ep_curl' [ 71%] Built target ep_curl [ 73%] Creating directories for 'ep_awssdk' [ 75%] Performing download step (download, verify and extract) for 'ep_awssdk' -- ep_awssdk download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/build/externals/src/ep_awssdk-stamp/ep_awssdk-download-*.log [ 76%] No update step for 'ep_awssdk' [ 78%] Performing patch step for 'ep_awssdk' patching file third-party/CMakeLists.txt [ 80%] Performing configure step for 'ep_awssdk' -- ep_awssdk configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/build/externals/src/ep_awssdk-stamp/ep_awssdk-configure-*.log [ 82%] Performing build step for 'ep_awssdk' -- ep_awssdk build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/build/externals/src/ep_awssdk-stamp/ep_awssdk-build-*.log [ 83%] Performing install step for 'ep_awssdk' -- ep_awssdk install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/build/externals/src/ep_awssdk-stamp/ep_awssdk-install-*.log [ 85%] Completed 'ep_awssdk' [ 85%] Built target ep_awssdk [ 87%] Creating directories for 'tiledb' [ 89%] No download step for 'tiledb' [ 91%] No update step for 'tiledb' [ 92%] No patch step for 'tiledb' [ 94%] Performing configure step for 'tiledb' -- The C compiler identification is GNU 7.5.0 -- The CXX compiler identification is GNU 7.5.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Starting TileDB regular build. -- The TileDB library is compiled with stats enabled. -- Looking for pthread.h -- Looking for pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Found OpenSSL: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/build/externals/install/lib/libcrypto.a (found suitable version "1.1.1i", minimum required is "1.1.0") -- Found OpenSSL: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/build/externals/install/lib/libssl.a -- OpenSSL crypto: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/build/externals/install/lib/libcrypto.a -- root: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/build/externals/install;/usr/local/opt/openssl -- The TileDB library is compiled with S3 support. -- Found AWS SDK for C++, Version: 1.8.84, Install Root:/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/build/externals/install, Platform Prefix:, Platform Dependent Libraries: pthread;crypto;ssl;z;curl -- Found AWS lib: aws-cpp-sdk-s3 (/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/build/externals/install/lib/libaws-cpp-sdk-s3.a) -- Found AWS lib: aws-cpp-sdk-core (/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/build/externals/install/lib/libaws-cpp-sdk-core.a) -- Found AWS lib: aws-c-event-stream (/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/build/externals/install/lib/libaws-c-event-stream.a) -- Found AWS lib: aws-checksums (/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/build/externals/install/lib/libaws-checksums.a) -- Found AWS lib: aws-c-common (/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/build/externals/install/lib/libaws-c-common.a) -- Found AWS lib: aws-c-common (/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/build/externals/install/lib/libaws-c-common.a) -- Found AWS lib: aws-c-event-stream (/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/build/externals/install/lib/libaws-c-event-stream.a) -- Found AWS lib: aws-checksums (/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/build/externals/install/lib/libaws-checksums.a) -- Found AWS lib: aws-cpp-sdk-sts (/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/build/externals/install/lib/libaws-cpp-sdk-sts.a) -- Found AWS lib: aws-cpp-sdk-identity-management (/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/build/externals/install/lib/libaws-cpp-sdk-identity-management.a) -- Found CURL: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/build/externals/install/lib/libcurl.a (found version "7.74.0") -- Found CURL: '/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/build/externals/install/lib/libcurl.a' (found version "") -- The TileDB library is compiled with HDFS support. CMake Warning (dev) at /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages/cmake/data/share/cmake-3.21/Modules/FindPackageHandleStandardArgs.cmake:438 (message): The package name passed to `find_package_handle_standard_args` (Bzip2) does not match the name of the calling package (Bzip2_EP). This can lead to problems in calling code that expects `find_package` result variables (e.g., `_FOUND`) to follow a certain pattern. Call Stack (most recent call first): cmake/Modules/FindBzip2_EP.cmake:72 (FIND_PACKAGE_HANDLE_STANDARD_ARGS) tiledb/CMakeLists.txt:441 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found Bzip2: /usr/lib/x86_64-linux-gnu/libbz2.so CMake Warning (dev) at /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages/cmake/data/share/cmake-3.21/Modules/FindPackageHandleStandardArgs.cmake:438 (message): The package name passed to `find_package_handle_standard_args` (LZ4) does not match the name of the calling package (LZ4_EP). This can lead to problems in calling code that expects `find_package` result variables (e.g., `_FOUND`) to follow a certain pattern. Call Stack (most recent call first): cmake/Modules/FindLZ4_EP.cmake:73 (FIND_PACKAGE_HANDLE_STANDARD_ARGS) tiledb/CMakeLists.txt:442 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found LZ4: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/build/externals/install/lib/liblz4.a CMake Warning (dev) at /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages/cmake/data/share/cmake-3.21/Modules/FindPackageHandleStandardArgs.cmake:438 (message): The package name passed to `find_package_handle_standard_args` (Spdlog) does not match the name of the calling package (Spdlog_EP). This can lead to problems in calling code that expects `find_package` result variables (e.g., `_FOUND`) to follow a certain pattern. Call Stack (most recent call first): cmake/Modules/FindSpdlog_EP.cmake:45 (FIND_PACKAGE_HANDLE_STANDARD_ARGS) tiledb/CMakeLists.txt:443 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found Spdlog: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/build/externals/src/ep_spdlog/include -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.11") -- Found Zlib, adding imported target: /usr/lib/x86_64-linux-gnu/libz.so CMake Warning (dev) at /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages/cmake/data/share/cmake-3.21/Modules/FindPackageHandleStandardArgs.cmake:438 (message): The package name passed to `find_package_handle_standard_args` (Zstd) does not match the name of the calling package (Zstd_EP). This can lead to problems in calling code that expects `find_package` result variables (e.g., `_FOUND`) to follow a certain pattern. Call Stack (most recent call first): cmake/Modules/FindZstd_EP.cmake:73 (FIND_PACKAGE_HANDLE_STANDARD_ARGS) tiledb/CMakeLists.txt:445 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found Zstd: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/build/externals/install/lib/libzstd.a -- Found curl-config: '/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/build/externals/install/bin/curl-config' -- Computed initial transitive Curl library links to TileDB targets: '/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/build/externals/install/lib/libcurl.a;-L/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/build/externals/install/lib;-lssl;-lz;-lcrypto;-ldl;-lpthread;-pthread' -- Adding final transitive Curl library links to TileDB targets: '/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/build/externals/install/lib/libcurl.a;-L/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/build/externals/install/lib;-ldl;-lpthread;-pthread' -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- Configuring done -- Generating done -- Build files have been written to: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/build/tiledb [ 96%] Performing build step for 'tiledb' [ 0%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/common/heap_memory.cc.o [ 0%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/common/heap_profiler.cc.o [ 2%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/common/logger.cc.o [ 2%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/common/status.cc.o [ 4%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/common/thread_pool.cc.o [ 4%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/array/array.cc.o [ 6%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/array_schema/array_schema.cc.o [ 6%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/array_schema/attribute.cc.o [ 8%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/array_schema/dimension.cc.o [ 8%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/array_schema/domain.cc.o [ 8%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/buffer/buffer.cc.o [ 11%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/buffer/buffer_list.cc.o [ 11%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/buffer/const_buffer.cc.o [ 13%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/buffer/preallocated_buffer.cc.o [ 13%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/c_api/tiledb.cc.o [ 15%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/cache/buffer_lru_cache.cc.o [ 15%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/compressors/bzip_compressor.cc.o [ 17%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/compressors/dd_compressor.cc.o [ 17%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/compressors/gzip_compressor.cc.o [ 20%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/compressors/lz4_compressor.cc.o [ 20%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/compressors/rle_compressor.cc.o [ 20%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/compressors/zstd_compressor.cc.o [ 22%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/config/config.cc.o [ 22%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/config/config_iter.cc.o [ 24%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/crypto/crypto.cc.o [ 24%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/crypto/encryption_key.cc.o [ 26%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/crypto/encryption_key_validation.cc.o [ 26%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/crypto/crypto_openssl.cc.o [ 28%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/crypto/crypto_win32.cc.o [ 28%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filesystem/azure.cc.o [ 31%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filesystem/gcs.cc.o [ 31%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filesystem/mem_filesystem.cc.o [ 31%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filesystem/hdfs_filesystem.cc.o [ 33%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filesystem/posix.cc.o [ 33%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filesystem/s3.cc.o [ 35%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filesystem/s3_thread_pool_executor.cc.o [ 35%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filesystem/vfs.cc.o [ 37%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filesystem/vfs_file_handle.cc.o [ 37%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filesystem/win.cc.o [ 40%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filter/bit_width_reduction_filter.cc.o [ 40%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filter/bitshuffle_filter.cc.o [ 42%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filter/byteshuffle_filter.cc.o [ 42%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filter/checksum_md5_filter.cc.o [ 42%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filter/checksum_sha256_filter.cc.o [ 44%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filter/compression_filter.cc.o [ 44%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filter/encryption_aes256gcm_filter.cc.o [ 46%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filter/filter.cc.o [ 46%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filter/filter_buffer.cc.o [ 48%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filter/filter_pipeline.cc.o [ 48%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filter/filter_storage.cc.o [ 51%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filter/noop_filter.cc.o [ 51%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filter/positive_delta_filter.cc.o [ 51%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/fragment/fragment_info.cc.o [ 53%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/fragment/fragment_metadata.cc.o [ 53%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/global_state/global_state.cc.o [ 55%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/global_state/libcurl_state.cc.o [ 55%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/global_state/openssl_state.cc.o [ 57%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/global_state/signal_handlers.cc.o [ 57%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/global_state/watchdog.cc.o [ 60%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/metadata/metadata.cc.o [ 60%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/misc/cancelable_tasks.cc.o [ 62%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/misc/constants.cc.o [ 62%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/misc/uri.cc.o [ 62%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/misc/utils.cc.o [ 64%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/misc/uuid.cc.o [ 64%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/misc/win_constants.cc.o [ 66%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/misc/work_arounds.cc.o [ 66%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/query/dense_tiler.cc.o [ 68%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/query/query.cc.o [ 68%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/query/query_condition.cc.o [ 71%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/query/reader.cc.o [ 71%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/query/result_tile.cc.o [ 73%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/query/read_cell_slab_iter.cc.o [ 73%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/query/writer.cc.o [ 73%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/rest/rest_client.cc.o [ 75%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/rtree/rtree.cc.o [ 75%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/serialization/array_schema.cc.o [ 77%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/serialization/config.cc.o [ 77%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/serialization/query.cc.o [ 80%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/stats/global_stats.cc.o [ 80%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/stats/stats.cc.o [ 82%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/stats/timer_stat.cc.o [ 82%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/storage_manager/context.cc.o [ 84%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/storage_manager/consolidator.cc.o [ 84%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/storage_manager/open_array.cc.o [ 84%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/storage_manager/storage_manager.cc.o [ 86%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/subarray/cell_slab_iter.cc.o [ 86%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/subarray/subarray.cc.o [ 88%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/subarray/subarray_partitioner.cc.o [ 88%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/subarray/subarray_tile_overlap.cc.o [ 91%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/tile/chunked_buffer.cc.o [ 91%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/tile/tile.cc.o [ 93%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/tile/generic_tile_io.cc.o [ 93%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/__/external/src/md5/md5.cc.o [ 93%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/__/external/src/bitshuffle/iochain.cc.o [ 95%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/__/external/src/bitshuffle/bitshuffle_core.cc.o [ 95%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/__/external/src/blosc/shuffle.cc.o [ 97%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/__/external/src/blosc/shuffle-avx2.cc.o [ 97%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/__/external/src/blosc/shuffle-generic.cc.o [100%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/__/external/src/blosc/shuffle-sse2.cc.o [100%] Built target TILEDB_CORE_OBJECTS [100%] Linking CXX shared library libtiledb.so [100%] Built target tiledb_shared [ 98%] No install step for 'tiledb' [100%] Completed 'tiledb' [100%] Built target tiledb Consolidate compiler generated dependencies of target TILEDB_CORE_OBJECTS [100%] Built target TILEDB_CORE_OBJECTS [100%] Built target tiledb_shared Install the project... -- Install configuration: "Release" -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/dist/lib/libtiledb.so.2.3 -- Set runtime path of "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/dist/lib/libtiledb.so.2.3" to "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/dist/lib" -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/dist/lib/libtiledb.so -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/dist/include/tiledb/tiledb.h -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/dist/include/tiledb/tiledb_enum.h -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/dist/include/tiledb/tiledb_version.h -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/dist/include/tiledb/tiledb -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/dist/include/tiledb/array.h -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/dist/include/tiledb/array_schema.h -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/dist/include/tiledb/attribute.h -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/dist/include/tiledb/config.h -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/dist/include/tiledb/context.h -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/dist/include/tiledb/core_interface.h -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/dist/include/tiledb/deleter.h -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/dist/include/tiledb/dimension.h -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/dist/include/tiledb/domain.h -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/dist/include/tiledb/exception.h -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/dist/include/tiledb/filter.h -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/dist/include/tiledb/filter_list.h -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/dist/include/tiledb/fragment_info.h -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/dist/include/tiledb/group.h -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/dist/include/tiledb/object.h -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/dist/include/tiledb/object_iter.h -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/dist/include/tiledb/query.h -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/dist/include/tiledb/query_condition.h -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/dist/include/tiledb/schema_base.h -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/dist/include/tiledb/stats.h -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/dist/include/tiledb/type.h -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/dist/include/tiledb/utils.h -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/dist/include/tiledb/version.h -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/dist/include/tiledb/vfs.h -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/dist/include/tiledb/arrowio -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/dist/include/tiledb/arrow_io_impl.h -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/dist/include/tiledb/tiledb_export.h -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/dist/lib/cmake/TileDB/TileDBConfig.cmake -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/dist/lib/cmake/TileDB/TileDBTargets.cmake -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/dist/lib/cmake/TileDB/TileDBTargets-release.cmake -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/dist/lib/pkgconfig/tiledb.pc Built target install-tiledb ext_modules: [, ] tiledb_ext: main_ext: tiledb_ext.library_dirs: [] libtiledb_exists checking 'library_dirs': [] libtiledb_exists found: 'None' Downloading TileDB package from 2.3.3... Building libtiledb in directory /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/build... CMake configure command: ['cmake', '-DCMAKE_INSTALL_PREFIX=/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/dist', '-DTILEDB_TESTS=OFF', '-DTILEDB_S3=ON', '-DTILEDB_WERROR=OFF', '-DTILEDB_HDFS=ON', '-DTILEDB_INSTALL_LIBDIR=lib', '-DTILEDB_CPP_API=ON', '-DTILEDB_LOG_OUTPUT_ON_FAILURE=ON', '-DTILEDB_FORCE_ALL_DEPS:BOOL=OFF', '-DTILEDB_SERIALIZATION:BOOL=OFF', '-DCMAKE_BUILD_TYPE=Release', '/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3'] prefix_dir: do_install: True Copying file /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/dist/lib/libtiledb.so to /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/tiledb/native/libtiledb.so ------------------- libtiledb_objects: ['native/libtiledb.so*'] ------------------- running egg_info creating tiledb.egg-info writing tiledb.egg-info/PKG-INFO writing dependency_links to tiledb.egg-info/dependency_links.txt writing requirements to tiledb.egg-info/requires.txt writing top-level names to tiledb.egg-info/top_level.txt writing manifest file 'tiledb.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' adding license file 'external/LICENSE-string_view.txt' adding license file 'external/LICENSE-tsl_robin_map.txt' writing manifest file 'tiledb.egg-info/SOURCES.txt' installing library code to build/bdist.linux-x86_64/egg running install_lib running build_py creating build/lib.linux-x86_64-3.7 creating build/lib.linux-x86_64-3.7/tiledb copying tiledb/array.py -> build/lib.linux-x86_64-3.7/tiledb copying tiledb/ctx.py -> build/lib.linux-x86_64-3.7/tiledb copying tiledb/fragment.py -> build/lib.linux-x86_64-3.7/tiledb copying tiledb/util.py -> build/lib.linux-x86_64-3.7/tiledb copying tiledb/highlevel.py -> build/lib.linux-x86_64-3.7/tiledb copying tiledb/query_condition.py -> build/lib.linux-x86_64-3.7/tiledb copying tiledb/version.py -> build/lib.linux-x86_64-3.7/tiledb copying tiledb/parquet_.py -> build/lib.linux-x86_64-3.7/tiledb copying tiledb/multirange_indexing.py -> build/lib.linux-x86_64-3.7/tiledb copying tiledb/__init__.py -> build/lib.linux-x86_64-3.7/tiledb copying tiledb/dataframe_.py -> build/lib.linux-x86_64-3.7/tiledb creating build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/test_multi_index.py -> build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/test_fragment_info.py -> build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/test_dask.py -> build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/test_hypothesis.py -> build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/datatypes.py -> build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/test_domain_index.py -> build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/conftest.py -> build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/test_fixes.py -> build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/fixtures.py -> build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/test_multi_index-hp.py -> build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/test_query_condition.py -> build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/test_libtiledb.py -> build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/test_core.py -> build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/common.py -> build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/check_csv_dir.py -> build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/test_serialization.py -> build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/test_pandas_dataframe.py -> build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/strategies.py -> build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/test_examples.py -> build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/all.py -> build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/test_util.py -> build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/__init__.py -> build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/test_compat.py -> build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/test_metadata.py -> build/lib.linux-x86_64-3.7/tiledb/tests creating build/lib.linux-x86_64-3.7/tiledb/native copying tiledb/native/libtiledb.so -> build/lib.linux-x86_64-3.7/tiledb/native running build_ext ext_modules: [, ] tiledb_ext: main_ext: tiledb_ext.library_dirs: ['/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/dist/lib'] libtiledb_exists checking 'library_dirs': ['/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/dist/lib'] libtiledb_exists found: '/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/dist/lib/libtiledb.so' prefix_dir: do_install: False cythoning tiledb/libtiledb.pyx to tiledb/libtiledb.cpp building 'tiledb.libtiledb' extension creating build/temp.linux-x86_64-3.7 creating build/temp.linux-x86_64-3.7/tiledb gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/dist/include -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages/numpy/core/include -I/home/docs/.pyenv/versions/3.7.9/include/python3.7m -c tiledb/libtiledb.cpp -o build/temp.linux-x86_64-3.7/tiledb/libtiledb.o -std=c++11 -Wno-deprecated-declarations In file included from /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969:0, from /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from tiledb/libtiledb.cpp:643: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ tiledb/libtiledb.pyx: In function ‘PyObject* __pyx_pf_6tiledb_9libtiledb_4Attr_4fill___get__(__pyx_obj_6tiledb_9libtiledb_Attr*)’: tiledb/libtiledb.pyx:2383:12: warning: variable ‘__pyx_v_shape’ set but not used [-Wunused-but-set-variable] """Fill value for unset cells of this attribute ^~~~~~~~~~~~~ tiledb/libtiledb.pyx: In function ‘PyObject* __pyx_pf_6tiledb_9libtiledb_5Array_30nonempty_domain(__pyx_obj_6tiledb_9libtiledb_Array*)’: tiledb/libtiledb.pyx:4263:18: warning: ‘__pyx_v_end_buf_ptr’ may be used uninitialized in this function [-Wmaybe-uninitialized] rc = tiledb_array_get_non_empty_domain_var_from_index( ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tiledb/libtiledb.pyx:4215:9: note: ‘__pyx_v_end_buf_ptr’ was declared here """Return the minimum bounding domain which encompasses nonempty values. ^~~~~~~~~~~~~~~~~~~ g++ -pthread -shared -L/home/docs/.pyenv/versions/3.7.9/lib -L/home/docs/.pyenv/versions/3.7.9/lib build/temp.linux-x86_64-3.7/tiledb/libtiledb.o -L/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/dist/lib -ltiledb -o build/lib.linux-x86_64-3.7/tiledb/libtiledb.cpython-37m-x86_64-linux-gnu.so building 'tiledb.main' extension creating build/temp.linux-x86_64-3.7/tiledb/tests gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages/pybind11/include -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages/pybind11/include -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/dist/include -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages/numpy/core/include -I/home/docs/.pyenv/versions/3.7.9/include/python3.7m -c tiledb/main.cc -o build/temp.linux-x86_64-3.7/tiledb/main.o -std=c++11 -Wno-deprecated-declarations -fvisibility=hidden gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages/pybind11/include -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages/pybind11/include -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.3/dist/include -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages/numpy/core/include -I/home/docs/.pyenv/versions/3.7.9/include/python3.7m -c tiledb/core.cc -o build/temp.linux-x86_64-3.7/tiledb/core.o -std=c++11 -Wno-deprecated-declarations -fvisibility=hidden tiledb/core.cc:24:10: fatal error: tiledb/tiledb_serialization.h: No such file or directory #include // C ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ compilation terminated. /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages/setuptools_scm/git.py:94: UserWarning: "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest" is shallow and may cause errors warnings.warn(f'"{wd.path}" is shallow and may cause errors') /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/tiledb/libtiledb.pxd tree = Parsing.p_module(s, pxd, full_module_name) error: command 'gcc' failed with exit status 1