Read the Docs build information Build id: 717476 Project: cyverse-doi-request-quickstart Version: master Commit: bdc8fca67640ad480f4d10a60139685b2b339585 Date: 2021-09-08T18:38:17.529526Z State: finished Success: True [rtd-command-info] start-time: 2021-09-08T18:38:19.139154Z, end-time: 2021-09-08T18:38:23.115647Z, duration: 3, exit-code: 0 git clone --no-single-branch --depth 50 https://github.com/CyVerse-learning-materials/DOI_request_quickstart.git . Cloning into '.'... [rtd-command-info] start-time: 2021-09-08T18:38:23.248115Z, end-time: 2021-09-08T18:38:23.342684Z, duration: 0, exit-code: 0 git checkout --force origin/master Note: checking out 'origin/master'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at bdc8fca updated to new UI [rtd-command-info] start-time: 2021-09-08T18:38:23.483991Z, end-time: 2021-09-08T18:38:23.563137Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2021-09-08T18:38:24.586772Z, end-time: 2021-09-08T18:38:28.009197Z, duration: 3, exit-code: 0 python2.7 -mvirtualenv New python executable in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/envs/master/bin/python2.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/envs/master/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2021-09-08T18:38:28.120044Z, end-time: 2021-09-08T18:38:29.877559Z, duration: 1, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip setuptools DEPRECATION: Python 2.7 reached the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 is no longer maintained. pip 21.0 will drop support for Python 2.7 in January 2021. More details about Python 2 support in pip can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support pip 21.0 will remove support for this functionality. Requirement already up-to-date: pip in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/envs/master/lib/python2.7/site-packages (20.3.4) Requirement already up-to-date: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/envs/master/lib/python2.7/site-packages (44.1.1) [rtd-command-info] start-time: 2021-09-08T18:38:30.052583Z, end-time: 2021-09-08T18:38:38.516913Z, duration: 8, exit-code: 0 python -m pip install --upgrade --no-cache-dir mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<2.2 DEPRECATION: Python 2.7 reached the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 is no longer maintained. pip 21.0 will drop support for Python 2.7 in January 2021. More details about Python 2 support in pip can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support pip 21.0 will remove support for this functionality. Collecting mock==1.0.1 Downloading mock-1.0.1.tar.gz (818 kB) Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp27-cp27mu-manylinux1_x86_64.whl (2.0 MB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.5-py2.py3-none-any.whl (3.1 MB) Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) Collecting readthedocs-sphinx-ext<2.2 Downloading readthedocs_sphinx_ext-2.1.4-py2.py3-none-any.whl (29 kB) Collecting future Downloading future-0.18.2.tar.gz (829 kB) Collecting docutils>=0.11 Downloading docutils-0.17.1-py2.py3-none-any.whl (575 kB) Collecting imagesize Downloading imagesize-1.2.0-py2.py3-none-any.whl (4.8 kB) Collecting typing; python_version < "3.5" Downloading typing-3.10.0.0-py2-none-any.whl (26 kB) Collecting Pygments>=2.0 Downloading Pygments-2.5.2-py2.py3-none-any.whl (896 kB) Collecting Jinja2>=2.3 Downloading Jinja2-2.11.3-py2.py3-none-any.whl (125 kB) Collecting packaging Downloading packaging-20.9-py2.py3-none-any.whl (40 kB) Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.1.0-py2.py3-none-any.whl (93 kB) Requirement already satisfied, skipping upgrade: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/envs/master/lib/python2.7/site-packages (from sphinx<2) (44.1.1) Collecting babel!=2.0,>=1.3 Downloading Babel-2.9.1-py2.py3-none-any.whl (8.8 MB) Collecting six>=1.5 Downloading six-1.16.0-py2.py3-none-any.whl (11 kB) Collecting requests>=2.0.0 Downloading requests-2.26.0-py2.py3-none-any.whl (62 kB) Collecting sphinxcontrib-websupport Downloading sphinxcontrib_websupport-1.1.2-py2.py3-none-any.whl (39 kB) Collecting MarkupSafe>=0.23 Downloading MarkupSafe-1.1.1-cp27-cp27mu-manylinux1_x86_64.whl (24 kB) Collecting pyparsing>=2.0.2 Downloading pyparsing-2.4.7-py2.py3-none-any.whl (67 kB) Collecting pytz>=2015.7 Downloading pytz-2021.1-py2.py3-none-any.whl (510 kB) Collecting certifi>=2017.4.17 Downloading certifi-2021.5.30-py2.py3-none-any.whl (145 kB) Collecting urllib3<1.27,>=1.21.1 Downloading urllib3-1.26.6-py2.py3-none-any.whl (138 kB) Collecting chardet<5,>=3.0.2; python_version < "3" Downloading chardet-4.0.0-py2.py3-none-any.whl (178 kB) Collecting idna<3,>=2.5; python_version < "3" Downloading idna-2.10-py2.py3-none-any.whl (58 kB) Building wheels for collected packages: mock, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py2-none-any.whl size=23754 sha256=155ad4ca7699b9dd9e18962882cac0d9dda4bc8c36d09c346b80d560387890fa Stored in directory: /tmp/pip-ephem-wheel-cache-Tdldpn/wheels/ad/62/e0/a06cc957652749e64c7904e899eca3ecb2ec47c60d52653660 Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py2-none-any.whl size=502567 sha256=cf07cf6e2e70d3ca75ac8ee2114b959b128ce6e1ba167218150e4e2fc0b08a0e Stored in directory: /tmp/pip-ephem-wheel-cache-Tdldpn/wheels/5f/11/0c/aad680baf5ef4fbcbab992c9f03e1130357e0c173a4fdabfff Successfully built mock future Installing collected packages: mock, pillow, alabaster, future, commonmark, imagesize, typing, Pygments, docutils, MarkupSafe, Jinja2, pyparsing, packaging, snowballstemmer, pytz, babel, six, certifi, urllib3, chardet, idna, requests, sphinxcontrib-websupport, sphinx, recommonmark, sphinx-rtd-theme, readthedocs-sphinx-ext Successfully installed Jinja2-2.11.3 MarkupSafe-1.1.1 Pygments-2.5.2 alabaster-0.7.12 babel-2.9.1 certifi-2021.5.30 chardet-4.0.0 commonmark-0.8.1 docutils-0.17.1 future-0.18.2 idna-2.10 imagesize-1.2.0 mock-1.0.1 packaging-20.9 pillow-5.4.1 pyparsing-2.4.7 pytz-2021.1 readthedocs-sphinx-ext-2.1.4 recommonmark-0.5.0 requests-2.26.0 six-1.16.0 snowballstemmer-2.1.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-websupport-1.1.2 typing-3.10.0.0 urllib3-1.26.6 [rtd-command-info] start-time: 2021-09-08T18:38:39.511147Z, end-time: 2021-09-08T18:38:39.573079Z, duration: 0, exit-code: 0 cat conf.py #!/usr/bin/env python3 # Version 2.0, May 2020 # -*- coding: utf-8 -*- # # General information about the project. import sys import os sys.path.insert(0, os.path.dirname(__file__)) from misc.cyverse_sphinx_conf import * # noqa project = 'DOI Request' copyright = '2020, CyVerse' author = 'your_name' version = '2.0' release = '2.0' epub_title = project epub_author = author epub_publisher = author epub_copyright = copyright ########################################################################### # auto-created readthedocs.org specific configuration # ########################################################################### # # The following code was added during an automated build on readthedocs.org # It is auto created and injected for every build. The result is based on the # conf.py.tmpl file found in the readthedocs.org codebase: # https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl # # Note: this file shouldn't rely on extra dependencies. import importlib import sys import os.path # Borrowed from six. PY3 = sys.version_info[0] == 3 string_types = str if PY3 else basestring from sphinx import version_info # Get suffix for proper linking to GitHub # This is deprecated in Sphinx 1.3+, # as each page can have its own suffix if globals().get('source_suffix', False): if isinstance(source_suffix, string_types): SUFFIX = source_suffix elif isinstance(source_suffix, (list, tuple)): # Sphinx >= 1.3 supports list/tuple to define multiple suffixes SUFFIX = source_suffix[0] elif isinstance(source_suffix, dict): # Sphinx >= 1.8 supports a mapping dictionary for multiple suffixes SUFFIX = list(source_suffix.keys())[0] # make a ``list()`` for py2/py3 compatibility else: # default to .rst SUFFIX = '.rst' else: SUFFIX = '.rst' # Add RTD Static Path. Add to the end because it overwrites previous files. if not 'html_static_path' in globals(): html_static_path = [] if os.path.exists('_static'): html_static_path.append('_static') # Add RTD Theme only if they aren't overriding it already using_rtd_theme = ( ( 'html_theme' in globals() and html_theme in ['default'] and # Allow people to bail with a hack of having an html_style 'html_style' not in globals() ) or 'html_theme' not in globals() ) if using_rtd_theme: theme = importlib.import_module('sphinx_rtd_theme') html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} if 'html_theme_path' in globals(): html_theme_path.append(theme.get_html_theme_path()) else: html_theme_path = [theme.get_html_theme_path()] if globals().get('websupport2_base_url', False): websupport2_base_url = 'https://readthedocs.com/websupport' websupport2_static_url = 'https://assets.readthedocs.com/' #Add project information to the template context. context = { 'using_theme': using_rtd_theme, 'html_theme': html_theme, 'current_version': "master", 'version_slug': "master", 'MEDIA_URL': "https://media.readthedocs.com/media/", 'STATIC_URL': "https://assets.readthedocs.com/", 'PRODUCTION_DOMAIN': "readthedocs.com", 'versions': [ ("master", "/en/master/"), ("latest", "/en/latest/"), ], 'downloads': [ ("html", "//learning.cyverse.org/_/downloads/cyverse-doi-request-quickstart/en/master/htmlzip/"), ], 'subprojects': [ ], 'slug': 'cyverse-doi-request-quickstart', 'name': u'DOI_request_quickstart', 'rtd_language': u'en', 'programming_language': u'words', 'canonical_url': 'https://learning.cyverse.org/projects/cyverse-doi-request-quickstart/en/latest/', 'analytics_code': 'UA-72224033-6', 'single_version': False, 'conf_py_path': '/', 'api_host': 'https://readthedocs.com', 'github_user': 'CyVerse-learning-materials', 'proxied_api_host': '/_', 'github_repo': 'DOI_request_quickstart', 'github_version': 'master', 'display_github': True, 'bitbucket_user': 'None', 'bitbucket_repo': 'None', 'bitbucket_version': 'master', 'display_bitbucket': False, 'gitlab_user': 'None', 'gitlab_repo': 'None', 'gitlab_version': 'master', 'display_gitlab': False, 'READTHEDOCS': True, 'using_theme': (html_theme == "default"), 'new_theme': (html_theme == "sphinx_rtd_theme"), 'source_suffix': SUFFIX, 'ad_free': False, 'docsearch_disabled': False, 'user_analytics_code': 'UA-72224033-6', 'global_analytics_code': 'UA-17997319-2', 'commit': 'bdc8fca6', } # For sphinx >=1.8 we can use html_baseurl to set the canonical URL. # https://www.sphinx-doc.org/en/master/usage/configuration.html#confval-html_baseurl if version_info >= (1, 8): if not globals().get('html_baseurl'): html_baseurl = context['canonical_url'] context['canonical_url'] = None if 'html_context' in globals(): html_context.update(context) else: html_context = context # Add custom RTD extension if 'extensions' in globals(): # Insert at the beginning because it can interfere # with other extensions. # See https://github.com/rtfd/readthedocs.org/pull/4054 extensions.insert(0, "readthedocs_ext.readthedocs") else: extensions = ["readthedocs_ext.readthedocs"] # Add External version warning banner to the external version documentation if 'branch' == 'external': extensions.insert(1, "readthedocs_ext.external_version_warning") readthedocs_vcs_url = 'None' readthedocs_build_url = 'https://readthedocs.com/projects/cyverse-doi-request-quickstart/builds/717476/' project_language = 'en' # User's Sphinx configurations language_user = globals().get('language', None) latex_engine_user = globals().get('latex_engine', None) latex_elements_user = globals().get('latex_elements', None) # Remove this once xindy gets installed in Docker image and XINDYOPS # env variable is supported # https://github.com/rtfd/readthedocs-docker-images/pull/98 latex_use_xindy = False chinese = any([ language_user in ('zh_CN', 'zh_TW'), project_language in ('zh_CN', 'zh_TW'), ]) japanese = any([ language_user == 'ja', project_language == 'ja', ]) if chinese: latex_engine = latex_engine_user or 'xelatex' latex_elements_rtd = { 'preamble': '\\usepackage[UTF8]{ctex}\n', } latex_elements = latex_elements_user or latex_elements_rtd elif japanese: latex_engine = latex_engine_user or 'platex' # Make sure our build directory is always excluded exclude_patterns = globals().get('exclude_patterns', []) exclude_patterns.extend(['_build']) [rtd-command-info] start-time: 2021-09-08T18:38:39.689980Z, end-time: 2021-09-08T18:38:41.318733Z, duration: 1, exit-code: 0 python -m sphinx -T -E -b html -d _build/doctrees -D language=en . _build/html Running Sphinx v1.8.5 loading translations [en]... done making output directory... building [mo]: targets for 0 po files that are out of date building [html]: targets for 14 source files that are out of date updating environment: 14 added, 0 changed, 0 removed reading sources... [ 7%] .github/ISSUE_TEMPLATE/triage-for-2-0-release /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/envs/master/lib/python2.7/site-packages/recommonmark/parser.py:65: UserWarning: Container node skipped: type=document warn("Container node skipped: type={0}".format(mdnode.t)) reading sources... [ 14%] Additional/doi_faq reading sources... [ 21%] Additional/naming reading sources... [ 28%] Additional/right4me reading sources... [ 35%] Contributors_maintainers reading sources... [ 42%] License reading sources... [ 50%] README reading sources... [ 57%] after /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/envs/master/lib/python2.7/site-packages/sphinx/util/nodes.py:94: FutureWarning: The iterable returned by Node.traverse() will become an iterator instead of a list in Docutils > 0.16. for classifier in reversed(node.parent.traverse(nodes.classifier)): reading sources... [ 64%] before reading sources... [ 71%] index reading sources... [ 78%] metadata reading sources... [ 85%] organize reading sources... [ 92%] slides/README reading sources... [100%] submit /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/.github/ISSUE_TEMPLATE/triage-for-2-0-release.md:0: WARNING: Document or section may not begin with a transition. /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/doi_faq.rst:1: WARNING: Problems with "include" directive path: InputError: [Errno 2] No such file or directory: 'Additional/cyverse_rst_defined_substitutions.txt'. /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/doi_faq.rst:10: WARNING: Title underline too short. DOI Frequently Asked Questions ---------------- /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/doi_faq.rst:12: WARNING: Title underline too short. Why should I publish my data in CyVerse Curated Data? =================================================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/doi_faq.rst:32: WARNING: Title underline too short. Can I publish to the Data Commons if my data is not static and curated by CyVerse? ============================================================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/doi_faq.rst:32: WARNING: Title underline too short. Can I publish to the Data Commons if my data is not static and curated by CyVerse? ============================================================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/doi_faq.rst:38: WARNING: Title underline too short. What is a DOI ? =========== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/doi_faq.rst:38: WARNING: Title underline too short. What is a DOI ? =========== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/doi_faq.rst:44: WARNING: Title underline too short. Do I need to contact CyVerse before requesting a DOI? ============================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/doi_faq.rst:44: WARNING: Title underline too short. Do I need to contact CyVerse before requesting a DOI? ============================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/doi_faq.rst:52: WARNING: Title underline too short. How much does a CyVerse permanent identifier cost? ============================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/doi_faq.rst:52: WARNING: Title underline too short. How much does a CyVerse permanent identifier cost? ============================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/doi_faq.rst:58: WARNING: Title underline too short. How long will it take to obtain a permanent identifier and publish my data? ========================================================================= /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/doi_faq.rst:58: WARNING: Title underline too short. How long will it take to obtain a permanent identifier and publish my data? ========================================================================= /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/doi_faq.rst:70: WARNING: Title underline too short. How small or big should my data be to be published? ============================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/doi_faq.rst:70: WARNING: Title underline too short. How small or big should my data be to be published? ============================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/doi_faq.rst:76: WARNING: Title underline too short. What is the policy for submitting compressed data to CyVerse Curated Data? ======================================================================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/doi_faq.rst:76: WARNING: Title underline too short. What is the policy for submitting compressed data to CyVerse Curated Data? ======================================================================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/doi_faq.rst:82: WARNING: Title underline too short. Can I publish data in CyVerse if I am not a CyVerse user? ============================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/doi_faq.rst:82: WARNING: Title underline too short. Can I publish data in CyVerse if I am not a CyVerse user? ============================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/doi_faq.rst:88: WARNING: Title underline too short. How secure is the data in the Curated Data site? ============================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/doi_faq.rst:88: WARNING: Title underline too short. How secure is the data in the Curated Data site? ============================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/doi_faq.rst:94: WARNING: Title underline too short. What is CyVerse Data Commons? long-term commitment to hosting public data? ============================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/doi_faq.rst:94: WARNING: Title underline too short. What is CyVerse Data Commons? long-term commitment to hosting public data? ============================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/doi_faq.rst:100: WARNING: Title underline too short. What if in the future I want to move my data to another repository? ============================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/doi_faq.rst:100: WARNING: Title underline too short. What if in the future I want to move my data to another repository? ============================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/doi_faq.rst:106: WARNING: Title underline too short. How can I make it easier for people to give me (and my co-creators) credit for using my dataset? ======================================================================================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/doi_faq.rst:106: WARNING: Title underline too short. How can I make it easier for people to give me (and my co-creators) credit for using my dataset? ======================================================================================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/doi_faq.rst:119: WARNING: Title underline too short. Whom do I choose for the creator versus contributor? ============================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/doi_faq.rst:119: WARNING: Title underline too short. Whom do I choose for the creator versus contributor? ============================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/doi_faq.rst:146: WARNING: Title underline too short. What metadata standards does CyVerse support for data publication? ================================================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/doi_faq.rst:146: WARNING: Title underline too short. What metadata standards does CyVerse support for data publication? ================================================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/doi_faq.rst:152: WARNING: Title underline too short. How can I organize and package my dataset for publication in the CyVerse Curated Data site? ======================================================================================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/doi_faq.rst:152: WARNING: Title underline too short. How can I organize and package my dataset for publication in the CyVerse Curated Data site? ======================================================================================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/doi_faq.rst:158: WARNING: Title underline too short. What if I want to change or add metadata to my public data? ============================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/doi_faq.rst:158: WARNING: Title underline too short. What if I want to change or add metadata to my public data? ============================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/doi_faq.rst:164: WARNING: Title underline too short. Where can I go for help on permanent identifiers? ============================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/doi_faq.rst:164: WARNING: Title underline too short. Where can I go for help on permanent identifiers? ============================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/naming.rst:1: WARNING: Problems with "include" directive path: InputError: [Errno 2] No such file or directory: 'Additional/cyverse_rst_defined_substitutions.txt'. /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/naming.rst:10: WARNING: Title underline too short. Data Commons Naming Conventions ======================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/naming.rst:14: WARNING: Title underline too short. General guidelines ------------- /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/naming.rst:32: WARNING: Bullet list ends without a blank line; unexpected unindent. /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/right4me.rst:1: WARNING: Problems with "include" directive path: InputError: [Errno 2] No such file or directory: 'Additional/cyverse_rst_defined_substitutions.txt'. /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/right4me.rst:10: WARNING: Title underline too short. Is the CyVerse Curated Data Repository right for my data? ---------------- /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/right4me.rst:16: WARNING: Title underline too short. Question 1: Do you have a CyVerse account? ===================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/right4me.rst:23: WARNING: Title underline too short. Question 2: Is your data ready for publication? ============================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/right4me.rst:23: WARNING: Title underline too short. Question 2: Is your data ready for publication? ============================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/right4me.rst:27: WARNING: Bullet list ends without a blank line; unexpected unindent. /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/right4me.rst:35: WARNING: Title underline too short. Question 3: Is your data suitable for reuse in scientific analyses? ======================================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/right4me.rst:35: WARNING: Title underline too short. Question 3: Is your data suitable for reuse in scientific analyses? ======================================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/right4me.rst:42: WARNING: Title underline too short. Question 4: Is there a canonical repository for your data? ======================================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/right4me.rst:42: WARNING: Title underline too short. Question 4: Is there a canonical repository for your data? ======================================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/before.rst:40: WARNING: Document or section may not begin with a transition. /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/index.rst:8: WARNING: Undefined substitution referenced: "Data_Commons_logo". /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/index.rst:8: WARNING: Unknown target name: "data_commons_logo". looking for now-outdated files... none found pickling environment... done checking consistency... /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/.github/ISSUE_TEMPLATE/triage-for-2-0-release.md: WARNING: document isn't included in any toctree /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Contributors_maintainers.md: WARNING: document isn't included in any toctree /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/License.md: WARNING: document isn't included in any toctree /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/README.md: WARNING: document isn't included in any toctree /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/slides/README.md: WARNING: document isn't included in any toctree done preparing documents... done writing output... [ 7%] .github/ISSUE_TEMPLATE/triage-for-2-0-release writing output... [ 14%] Additional/doi_faq writing output... [ 21%] Additional/naming writing output... [ 28%] Additional/right4me writing output... [ 35%] Contributors_maintainers writing output... [ 42%] License writing output... [ 50%] README writing output... [ 57%] after writing output... [ 64%] before writing output... [ 71%] index writing output... [ 78%] metadata writing output... [ 85%] organize writing output... [ 92%] slides/README writing output... [100%] submit generating indices... genindex writing additional pages... search copying images... [ 20%] Additional/../img/cyverse_rgb.png copying images... [ 40%] ./img/cyverse_learning.png copying images... [ 60%] Additional/../img/homeicon.png copying images... [ 80%] ./img/homeicon.png copying images... [100%] ./img/intercom.png copying static files... WARNING: html_static_path entry u'/home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/_static' does not exist done copying extra files... done dumping search index in English (code: en) ... done dumping object inventory... done build succeeded, 61 warnings. The HTML pages are in _build/html. Updating searchtools for Read the Docs search... [rtd-command-info] start-time: 2021-09-08T18:38:41.454977Z, end-time: 2021-09-08T18:38:42.776469Z, duration: 1, exit-code: 0 python -m sphinx -T -b readthedocssinglehtmllocalmedia -d _build/doctrees -D language=en . _build/localmedia Running Sphinx v1.8.5 loading translations [en]... done making output directory... loading pickled environment... done building [mo]: targets for 0 po files that are out of date building [readthedocssinglehtmllocalmedia]: all documents updating environment: 14 added, 0 changed, 0 removed reading sources... [ 7%] .github/ISSUE_TEMPLATE/triage-for-2-0-release /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/envs/master/lib/python2.7/site-packages/recommonmark/parser.py:65: UserWarning: Container node skipped: type=document warn("Container node skipped: type={0}".format(mdnode.t)) reading sources... [ 14%] Additional/doi_faq reading sources... [ 21%] Additional/naming reading sources... [ 28%] Additional/right4me reading sources... [ 35%] Contributors_maintainers reading sources... [ 42%] License reading sources... [ 50%] README reading sources... [ 57%] after /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/envs/master/lib/python2.7/site-packages/sphinx/util/nodes.py:94: FutureWarning: The iterable returned by Node.traverse() will become an iterator instead of a list in Docutils > 0.16. for classifier in reversed(node.parent.traverse(nodes.classifier)): reading sources... [ 64%] before reading sources... [ 71%] index reading sources... [ 78%] metadata reading sources... [ 85%] organize reading sources... [ 92%] slides/README reading sources... [100%] submit /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/.github/ISSUE_TEMPLATE/triage-for-2-0-release.md:0: WARNING: Document or section may not begin with a transition. /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/doi_faq.rst:1: WARNING: Problems with "include" directive path: InputError: [Errno 2] No such file or directory: 'Additional/cyverse_rst_defined_substitutions.txt'. /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/doi_faq.rst:10: WARNING: Title underline too short. DOI Frequently Asked Questions ---------------- /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/doi_faq.rst:12: WARNING: Title underline too short. Why should I publish my data in CyVerse Curated Data? =================================================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/doi_faq.rst:32: WARNING: Title underline too short. Can I publish to the Data Commons if my data is not static and curated by CyVerse? ============================================================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/doi_faq.rst:32: WARNING: Title underline too short. Can I publish to the Data Commons if my data is not static and curated by CyVerse? ============================================================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/doi_faq.rst:38: WARNING: Title underline too short. What is a DOI ? =========== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/doi_faq.rst:38: WARNING: Title underline too short. What is a DOI ? =========== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/doi_faq.rst:44: WARNING: Title underline too short. Do I need to contact CyVerse before requesting a DOI? ============================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/doi_faq.rst:44: WARNING: Title underline too short. Do I need to contact CyVerse before requesting a DOI? ============================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/doi_faq.rst:52: WARNING: Title underline too short. How much does a CyVerse permanent identifier cost? ============================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/doi_faq.rst:52: WARNING: Title underline too short. How much does a CyVerse permanent identifier cost? ============================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/doi_faq.rst:58: WARNING: Title underline too short. How long will it take to obtain a permanent identifier and publish my data? ========================================================================= /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/doi_faq.rst:58: WARNING: Title underline too short. How long will it take to obtain a permanent identifier and publish my data? ========================================================================= /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/doi_faq.rst:70: WARNING: Title underline too short. How small or big should my data be to be published? ============================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/doi_faq.rst:70: WARNING: Title underline too short. How small or big should my data be to be published? ============================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/doi_faq.rst:76: WARNING: Title underline too short. What is the policy for submitting compressed data to CyVerse Curated Data? ======================================================================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/doi_faq.rst:76: WARNING: Title underline too short. What is the policy for submitting compressed data to CyVerse Curated Data? ======================================================================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/doi_faq.rst:82: WARNING: Title underline too short. Can I publish data in CyVerse if I am not a CyVerse user? ============================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/doi_faq.rst:82: WARNING: Title underline too short. Can I publish data in CyVerse if I am not a CyVerse user? ============================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/doi_faq.rst:88: WARNING: Title underline too short. How secure is the data in the Curated Data site? ============================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/doi_faq.rst:88: WARNING: Title underline too short. How secure is the data in the Curated Data site? ============================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/doi_faq.rst:94: WARNING: Title underline too short. What is CyVerse Data Commons? long-term commitment to hosting public data? ============================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/doi_faq.rst:94: WARNING: Title underline too short. What is CyVerse Data Commons? long-term commitment to hosting public data? ============================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/doi_faq.rst:100: WARNING: Title underline too short. What if in the future I want to move my data to another repository? ============================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/doi_faq.rst:100: WARNING: Title underline too short. What if in the future I want to move my data to another repository? ============================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/doi_faq.rst:106: WARNING: Title underline too short. How can I make it easier for people to give me (and my co-creators) credit for using my dataset? ======================================================================================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/doi_faq.rst:106: WARNING: Title underline too short. How can I make it easier for people to give me (and my co-creators) credit for using my dataset? ======================================================================================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/doi_faq.rst:119: WARNING: Title underline too short. Whom do I choose for the creator versus contributor? ============================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/doi_faq.rst:119: WARNING: Title underline too short. Whom do I choose for the creator versus contributor? ============================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/doi_faq.rst:146: WARNING: Title underline too short. What metadata standards does CyVerse support for data publication? ================================================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/doi_faq.rst:146: WARNING: Title underline too short. What metadata standards does CyVerse support for data publication? ================================================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/doi_faq.rst:152: WARNING: Title underline too short. How can I organize and package my dataset for publication in the CyVerse Curated Data site? ======================================================================================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/doi_faq.rst:152: WARNING: Title underline too short. How can I organize and package my dataset for publication in the CyVerse Curated Data site? ======================================================================================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/doi_faq.rst:158: WARNING: Title underline too short. What if I want to change or add metadata to my public data? ============================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/doi_faq.rst:158: WARNING: Title underline too short. What if I want to change or add metadata to my public data? ============================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/doi_faq.rst:164: WARNING: Title underline too short. Where can I go for help on permanent identifiers? ============================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/doi_faq.rst:164: WARNING: Title underline too short. Where can I go for help on permanent identifiers? ============================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/naming.rst:1: WARNING: Problems with "include" directive path: InputError: [Errno 2] No such file or directory: 'Additional/cyverse_rst_defined_substitutions.txt'. /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/naming.rst:10: WARNING: Title underline too short. Data Commons Naming Conventions ======================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/naming.rst:14: WARNING: Title underline too short. General guidelines ------------- /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/naming.rst:32: WARNING: Bullet list ends without a blank line; unexpected unindent. /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/right4me.rst:1: WARNING: Problems with "include" directive path: InputError: [Errno 2] No such file or directory: 'Additional/cyverse_rst_defined_substitutions.txt'. /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/right4me.rst:10: WARNING: Title underline too short. Is the CyVerse Curated Data Repository right for my data? ---------------- /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/right4me.rst:16: WARNING: Title underline too short. Question 1: Do you have a CyVerse account? ===================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/right4me.rst:23: WARNING: Title underline too short. Question 2: Is your data ready for publication? ============================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/right4me.rst:23: WARNING: Title underline too short. Question 2: Is your data ready for publication? ============================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/right4me.rst:27: WARNING: Bullet list ends without a blank line; unexpected unindent. /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/right4me.rst:35: WARNING: Title underline too short. Question 3: Is your data suitable for reuse in scientific analyses? ======================================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/right4me.rst:35: WARNING: Title underline too short. Question 3: Is your data suitable for reuse in scientific analyses? ======================================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/right4me.rst:42: WARNING: Title underline too short. Question 4: Is there a canonical repository for your data? ======================================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Additional/right4me.rst:42: WARNING: Title underline too short. Question 4: Is there a canonical repository for your data? ======================================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/before.rst:40: WARNING: Document or section may not begin with a transition. /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/index.rst:8: WARNING: Undefined substitution referenced: "Data_Commons_logo". /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/index.rst:8: WARNING: Unknown target name: "data_commons_logo". looking for now-outdated files... none found pickling environment... done checking consistency... /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/.github/ISSUE_TEMPLATE/triage-for-2-0-release.md: WARNING: document isn't included in any toctree /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Contributors_maintainers.md: WARNING: document isn't included in any toctree /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/License.md: WARNING: document isn't included in any toctree /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/README.md: WARNING: document isn't included in any toctree /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/slides/README.md: WARNING: document isn't included in any toctree done preparing documents... done assembling single document... before organize metadata submit after Additional/right4me Additional/naming Additional/doi_faq writing... done writing additional files... copying images... [ 20%] Additional/../img/cyverse_rgb.png copying images... [ 40%] ./img/cyverse_learning.png copying images... [ 60%] Additional/../img/homeicon.png copying images... [ 80%] ./img/homeicon.png copying images... [100%] ./img/intercom.png copying static files... WARNING: html_static_path entry u'/home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/_static' does not exist done copying extra files... done dumping object inventory... done build succeeded, 61 warnings. The HTML page is in _build/localmedia. Updating searchtools for Read the Docs search...