Read the Docs build information Build id: 691031 Project: institute-for-disease-modeling-emodpy-malaria Version: latest Commit: 29f2abba64a13a946c2f4a75b9e1f032fde1eccf Date: 2021-08-03T17:14:23.822362Z State: finished Success: True [rtd-command-info] start-time: 2021-08-03T17:14:25.371721Z, end-time: 2021-08-03T17:14:27.702055Z, duration: 2, exit-code: 0 git clone --no-single-branch --depth 50 git@github.com:InstituteforDiseaseModeling/emodpy-malaria.git . Cloning into '.'... Warning: Permanently added 'github.com,192.30.255.113' (RSA) to the list of known hosts. [rtd-command-info] start-time: 2021-08-03T17:14:27.842212Z, end-time: 2021-08-03T17:14:28.058537Z, duration: 0, exit-code: 0 git checkout --force origin/main Note: checking out 'origin/main'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at 29f2abb fixed breadcrumbs and edit on github link (#271) [rtd-command-info] start-time: 2021-08-03T17:14:28.172566Z, end-time: 2021-08-03T17:14:28.235735Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2021-08-03T17:14:29.234530Z, end-time: 2021-08-03T17:14:33.376382Z, duration: 4, exit-code: 0 python3.7 -mvirtualenv Using base prefix '/home/docs/.pyenv/versions/3.7.9' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2021-08-03T17:14:33.491131Z, end-time: 2021-08-03T17:14:34.730495Z, duration: 1, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip setuptools Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/simple Requirement already satisfied: pip in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages (21.2.2) Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages (57.4.0) [rtd-command-info] start-time: 2021-08-03T17:14:34.854430Z, end-time: 2021-08-03T17:14:43.099645Z, duration: 8, exit-code: 0 python -m pip install --upgrade --no-cache-dir mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<2.2 Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/simple Collecting mock==1.0.1 Downloading mock-1.0.1.zip (861 kB) Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.5-py2.py3-none-any.whl (3.1 MB) Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) Collecting readthedocs-sphinx-ext<2.2 Downloading readthedocs_sphinx_ext-2.1.4-py2.py3-none-any.whl (29 kB) Collecting future Downloading future-0.18.2.tar.gz (829 kB) Collecting docutils>=0.11 Downloading docutils-0.17.1-py2.py3-none-any.whl (575 kB) Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.1.0-py2.py3-none-any.whl (93 kB) Collecting six>=1.5 Downloading six-1.16.0-py2.py3-none-any.whl (11 kB) Collecting babel!=2.0,>=1.3 Downloading Babel-2.9.1-py2.py3-none-any.whl (8.8 MB) Collecting requests>=2.0.0 Downloading requests-2.26.0-py2.py3-none-any.whl (62 kB) Collecting imagesize Downloading imagesize-1.2.0-py2.py3-none-any.whl (4.8 kB) Collecting Jinja2>=2.3 Downloading Jinja2-3.0.1-py3-none-any.whl (133 kB) Collecting Pygments>=2.0 Downloading Pygments-2.9.0-py3-none-any.whl (1.0 MB) Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages (from sphinx<2) (57.4.0) Collecting packaging Downloading packaging-21.0-py3-none-any.whl (40 kB) Collecting sphinxcontrib-websupport Downloading sphinxcontrib_websupport-1.2.4-py2.py3-none-any.whl (39 kB) Collecting pytz>=2015.7 Downloading pytz-2021.1-py2.py3-none-any.whl (510 kB) Collecting MarkupSafe>=2.0 Downloading MarkupSafe-2.0.1-cp37-cp37m-manylinux2010_x86_64.whl (31 kB) Collecting charset-normalizer~=2.0.0 Downloading charset_normalizer-2.0.4-py3-none-any.whl (36 kB) Collecting idna<4,>=2.5 Downloading idna-3.2-py3-none-any.whl (59 kB) Collecting certifi>=2017.4.17 Downloading certifi-2021.5.30-py2.py3-none-any.whl (145 kB) Collecting urllib3<1.27,>=1.21.1 Downloading urllib3-1.26.6-py2.py3-none-any.whl (138 kB) Collecting pyparsing>=2.0.2 Downloading pyparsing-2.4.7-py2.py3-none-any.whl (67 kB) Collecting sphinxcontrib-serializinghtml Downloading sphinxcontrib_serializinghtml-1.1.5-py2.py3-none-any.whl (94 kB) Building wheels for collected packages: mock, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23772 sha256=4972a495ddfe1cf9f91445cc947d5a975ca7146f4dea233e379b3aa7dd51b770 Stored in directory: /tmp/pip-ephem-wheel-cache-9k8cqswh/wheels/7a/94/b1/0fdc5339a5bd487a5cc15421ec200d9ba3e2aa7190e4a727f1 Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491070 sha256=b04562a117aa08dfe90a6a3584d8a4a64bfd14a0d9e6938758f49c4fe93c9afb Stored in directory: /tmp/pip-ephem-wheel-cache-9k8cqswh/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0 Successfully built mock future Installing collected packages: urllib3, sphinxcontrib-serializinghtml, pytz, pyparsing, MarkupSafe, idna, charset-normalizer, certifi, sphinxcontrib-websupport, snowballstemmer, six, requests, Pygments, packaging, Jinja2, imagesize, future, docutils, babel, alabaster, sphinx, commonmark, sphinx-rtd-theme, recommonmark, readthedocs-sphinx-ext, pillow, mock Successfully installed Jinja2-3.0.1 MarkupSafe-2.0.1 Pygments-2.9.0 alabaster-0.7.12 babel-2.9.1 certifi-2021.5.30 charset-normalizer-2.0.4 commonmark-0.8.1 docutils-0.17.1 future-0.18.2 idna-3.2 imagesize-1.2.0 mock-1.0.1 packaging-21.0 pillow-5.4.1 pyparsing-2.4.7 pytz-2021.1 readthedocs-sphinx-ext-2.1.4 recommonmark-0.5.0 requests-2.26.0 six-1.16.0 snowballstemmer-2.1.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-serializinghtml-1.1.5 sphinxcontrib-websupport-1.2.4 urllib3-1.26.6 [rtd-command-info] start-time: 2021-08-03T17:14:43.199783Z, end-time: 2021-08-03T17:15:03.814861Z, duration: 20, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r requirements.txt Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/simple Collecting emodpy~=1.11.1 Downloading https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/emodpy/1.11.2/emodpy-1.11.2-py3-none-any.whl (115 kB) Collecting emod-malaria==0.0.0 Downloading https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/emod-malaria/0.0.0/emod_malaria-0.0.0-py3-none-any.whl (3.4 MB) Collecting idmtools-platform-comps~=1.6.0 Downloading https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/idmtools-platform-comps/1.6.3/idmtools_platform_comps-1.6.3-py3-none-any.whl (158 kB) Collecting idmtools~=1.6.0 Downloading https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/idmtools/1.6.3/idmtools-1.6.3-py3-none-any.whl (137 kB) Collecting bs4 Downloading bs4-0.0.1.tar.gz (1.1 kB) Collecting keyring Downloading keyring-23.0.1-py3-none-any.whl (33 kB) Collecting idmtools-models~=1.6.0 Downloading https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/idmtools-models/1.6.3/idmtools_models-1.6.3-py3-none-any.whl (22 kB) Collecting click~=7.1 Downloading click-7.1.2-py2.py3-none-any.whl (82 kB) Collecting astunparse Downloading astunparse-1.6.3-py2.py3-none-any.whl (12 kB) Collecting astor Downloading astor-0.8.1-py2.py3-none-any.whl (27 kB) Collecting emod-api~=1.11.0 Downloading https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/emod-api/1.11.7/emod_api-1.11.7-py3-none-any.whl (106 kB) Collecting matplotlib Downloading matplotlib-3.4.2-cp37-cp37m-manylinux1_x86_64.whl (10.3 MB) Collecting pandas Downloading pandas-1.3.1-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (11.5 MB) Collecting pyproj Downloading pyproj-3.1.0-cp37-cp37m-manylinux2010_x86_64.whl (6.6 MB) Collecting pyyaml Downloading PyYAML-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (636 kB) Collecting lz4 Downloading lz4-3.1.3-cp37-cp37m-manylinux2010_x86_64.whl (1.8 MB) Collecting scipy Downloading scipy-1.7.1-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.whl (28.5 MB) Collecting geographiclib Downloading geographiclib-1.52-py3-none-any.whl (38 kB) Collecting shapely Downloading Shapely-1.7.1-cp37-cp37m-manylinux1_x86_64.whl (1.0 MB) Collecting numpy!=1.19.4 Downloading numpy-1.21.1-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (15.7 MB) Collecting diskcache~=5.1.0 Downloading diskcache-5.1.0-py3-none-any.whl (44 kB) Collecting backoff<1.11,>=1.10.0 Downloading backoff-1.10.0-py2.py3-none-any.whl (31 kB) Collecting pandas Downloading pandas-1.1.5-cp37-cp37m-manylinux1_x86_64.whl (9.5 MB) Collecting pluggy~=0.13.1 Downloading pluggy-0.13.1-py2.py3-none-any.whl (18 kB) Collecting tqdm<5,>=4.52.0 Downloading tqdm-4.62.0-py2.py3-none-any.whl (76 kB) Collecting pipreqs<0.5,>=0.4.10 Downloading pipreqs-0.4.10-py2.py3-none-any.whl (25 kB) Collecting pygit2<1.6.0,>=1.4.0 Downloading pygit2-1.5.0-cp37-cp37m-manylinux2014_x86_64.whl (3.1 MB) Collecting packaging<21.0,>=20.4 Downloading packaging-20.9-py2.py3-none-any.whl (40 kB) Collecting coloredlogs~=15.0 Downloading coloredlogs-15.0.1-py2.py3-none-any.whl (46 kB) Collecting more-itertools~=8.7.0 Downloading more_itertools-8.7.0-py3-none-any.whl (48 kB) Collecting tabulate<0.9,>=0.8.9 Downloading 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(0.18.2) Collecting xdg>=4.0.1 Downloading xdg-5.1.1-py3-none-any.whl (5.0 kB) Requirement already satisfied: requests>=2.11.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages (from pyCOMPS~=2.4.1->idmtools-platform-comps~=1.6.0->emodpy~=1.11.1->-r requirements.txt (line 1)) (2.26.0) Collecting cached-property Downloading cached_property-1.5.2-py2.py3-none-any.whl (7.6 kB) Collecting cffi>=1.4.0 Downloading cffi-1.14.6-cp37-cp37m-manylinux1_x86_64.whl (402 kB) Collecting pycparser Downloading pycparser-2.20-py2.py3-none-any.whl (112 kB) Requirement already satisfied: six>=1.5 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages (from python-dateutil>=2.7.3->pandas->emod-api~=1.11.0->emodpy~=1.11.1->-r requirements.txt (line 1)) (1.16.0) Requirement already satisfied: urllib3<1.27,>=1.21.1 in 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kiwisolver-1.3.1-cp37-cp37m-manylinux1_x86_64.whl (1.1 MB) Collecting pillow>=6.2.0 Downloading Pillow-8.3.1-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.whl (3.0 MB) Collecting cycler>=0.10 Downloading cycler-0.10.0-py2.py3-none-any.whl (6.5 kB) Building wheels for collected packages: bs4, docopt Building wheel for bs4 (setup.py): started Building wheel for bs4 (setup.py): finished with status 'done' Created wheel for bs4: filename=bs4-0.0.1-py3-none-any.whl size=1271 sha256=831348b27483959775ad1fff8ff0a8d47c41ac5a12108a38d0146c4b064e6513 Stored in directory: /tmp/pip-ephem-wheel-cache-p12qnnbx/wheels/0a/9e/ba/20e5bbc1afef3a491f0b3bb74d508f99403aabe76eda2167ca Building wheel for docopt (setup.py): started Building wheel for docopt (setup.py): finished with status 'done' Created wheel for docopt: filename=docopt-0.6.2-py2.py3-none-any.whl size=13724 sha256=d498059b6fae950c10f47898eff006820ad9303056f3fed4600337c4ef573432 Stored in directory: /tmp/pip-ephem-wheel-cache-p12qnnbx/wheels/72/b0/3f/1d95f96ff986c7dfffe46ce2be4062f38ebd04b506c77c81b9 Successfully built bs4 docopt Installing collected packages: zipp, typing-extensions, pycparser, yarg, python-dateutil, numpy, importlib-metadata, humanfriendly, docopt, cffi, cached-property, xdg, tqdm, tabulate, soupsieve, pyyaml, pygit2, pluggy, pipreqs, pandas, packaging, more-itertools, jeepney, diskcache, cryptography, coloredlogs, backoff, shapely, SecretStorage, scipy, pyproj, pyCOMPS, pillow, lz4, kiwisolver, jinja2, idmtools, geographiclib, cycler, beautifulsoup4, matplotlib, keyring, idmtools-platform-comps, idmtools-models, emod-api, click, bs4, astunparse, astor, emodpy, emod-malaria Attempting uninstall: packaging Found existing installation: packaging 21.0 Uninstalling packaging-21.0: Successfully uninstalled packaging-21.0 Attempting uninstall: pillow Found existing installation: Pillow 5.4.1 Uninstalling Pillow-5.4.1: Successfully uninstalled Pillow-5.4.1 Attempting uninstall: jinja2 Found existing installation: Jinja2 3.0.1 Uninstalling Jinja2-3.0.1: Successfully uninstalled Jinja2-3.0.1 Successfully installed SecretStorage-3.3.1 astor-0.8.1 astunparse-1.6.3 backoff-1.10.0 beautifulsoup4-4.9.3 bs4-0.0.1 cached-property-1.5.2 cffi-1.14.6 click-7.1.2 coloredlogs-15.0.1 cryptography-3.4.7 cycler-0.10.0 diskcache-5.1.0 docopt-0.6.2 emod-api-1.11.7 emod-malaria-0.0.0 emodpy-1.11.2 geographiclib-1.52 humanfriendly-9.2 idmtools-1.6.3 idmtools-models-1.6.3 idmtools-platform-comps-1.6.3 importlib-metadata-4.6.3 jeepney-0.7.1 jinja2-2.11.3 keyring-23.0.1 kiwisolver-1.3.1 lz4-3.1.3 matplotlib-3.4.2 more-itertools-8.7.0 numpy-1.21.1 packaging-20.9 pandas-1.1.5 pillow-8.3.1 pipreqs-0.4.10 pluggy-0.13.1 pyCOMPS-2.4.1 pycparser-2.20 pygit2-1.5.0 pyproj-3.1.0 python-dateutil-2.8.2 pyyaml-5.4.1 scipy-1.7.1 shapely-1.7.1 soupsieve-2.2.1 tabulate-0.8.9 tqdm-4.62.0 typing-extensions-3.10.0.0 xdg-5.1.1 yarg-0.1.9 zipp-3.5.0 [rtd-command-info] start-time: 2021-08-03T17:15:03.925570Z, end-time: 2021-08-03T17:15:10.220600Z, duration: 6, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r docs/requirements.txt Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/simple Collecting plantweb~=1.2.1 Downloading plantweb-1.2.1-py3-none-any.whl (20 kB) Collecting pygit2~=1.4.0 Downloading pygit2-1.4.0-cp37-cp37m-manylinux2010_x86_64.whl (3.0 MB) Collecting PyGithub~=1.54 Downloading PyGithub-1.55-py3-none-any.whl (291 kB) Collecting sphinx-copybutton~=0.3.1 Downloading sphinx_copybutton-0.3.3-py3-none-any.whl (12 kB) Collecting sphinx-rtd-theme~=0.5.0 Downloading sphinx_rtd_theme-0.5.2-py2.py3-none-any.whl (9.1 MB) Collecting sphinxcontrib-napoleon~=0.7 Downloading sphinxcontrib_napoleon-0.7-py2.py3-none-any.whl (17 kB) Collecting sphinxcontrib-programoutput~=0.16 Downloading sphinxcontrib_programoutput-0.17-py2.py3-none-any.whl (22 kB) Collecting sphinx~=3.3.1 Downloading Sphinx-3.3.1-py3-none-any.whl (2.9 MB) Collecting sphinxext.remoteliteralinclude Downloading sphinxext_remoteliteralinclude-0.3.0-py3-none-any.whl (6.3 kB) Requirement already satisfied: docutils in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages (from plantweb~=1.2.1->-r docs/requirements.txt (line 1)) (0.17.1) Requirement already satisfied: six in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages (from plantweb~=1.2.1->-r docs/requirements.txt (line 1)) (1.16.0) Requirement already satisfied: requests in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages (from plantweb~=1.2.1->-r docs/requirements.txt (line 1)) (2.26.0) Requirement already satisfied: cffi>=1.4.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages (from pygit2~=1.4.0->-r docs/requirements.txt (line 2)) (1.14.6) Requirement already satisfied: cached-property in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages (from pygit2~=1.4.0->-r docs/requirements.txt (line 2)) (1.5.2) Collecting pyjwt>=2.0 Downloading PyJWT-2.1.0-py3-none-any.whl (16 kB) Collecting pynacl>=1.4.0 Downloading PyNaCl-1.4.0-cp35-abi3-manylinux1_x86_64.whl (961 kB) Collecting deprecated Downloading Deprecated-1.2.12-py2.py3-none-any.whl (9.5 kB) Collecting docutils Downloading docutils-0.16-py2.py3-none-any.whl (548 kB) Collecting pockets>=0.3 Downloading pockets-0.9.1-py2.py3-none-any.whl (26 kB) Collecting sphinxcontrib-qthelp Downloading sphinxcontrib_qthelp-1.0.3-py2.py3-none-any.whl (90 kB) Requirement already satisfied: alabaster<0.8,>=0.7 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages (from sphinx~=3.3.1->-r docs/requirements.txt (line 8)) (0.7.12) Requirement already satisfied: packaging in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages (from sphinx~=3.3.1->-r docs/requirements.txt (line 8)) (20.9) Collecting sphinxcontrib-jsmath Downloading sphinxcontrib_jsmath-1.0.1-py2.py3-none-any.whl (5.1 kB) Collecting sphinxcontrib-applehelp Downloading sphinxcontrib_applehelp-1.0.2-py2.py3-none-any.whl (121 kB) Requirement already satisfied: Jinja2>=2.3 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages (from sphinx~=3.3.1->-r docs/requirements.txt (line 8)) (2.11.3) Collecting sphinxcontrib-devhelp Downloading sphinxcontrib_devhelp-1.0.2-py2.py3-none-any.whl (84 kB) Requirement already satisfied: Pygments>=2.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages (from sphinx~=3.3.1->-r docs/requirements.txt (line 8)) (2.9.0) Requirement already satisfied: babel>=1.3 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages (from sphinx~=3.3.1->-r docs/requirements.txt (line 8)) (2.9.1) Requirement already satisfied: snowballstemmer>=1.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages (from sphinx~=3.3.1->-r docs/requirements.txt (line 8)) (2.1.0) Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages (from sphinx~=3.3.1->-r docs/requirements.txt (line 8)) (57.4.0) Requirement already satisfied: imagesize in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages (from sphinx~=3.3.1->-r docs/requirements.txt (line 8)) (1.2.0) Requirement already satisfied: sphinxcontrib-serializinghtml in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages (from sphinx~=3.3.1->-r docs/requirements.txt (line 8)) (1.1.5) Collecting sphinxcontrib-htmlhelp Downloading sphinxcontrib_htmlhelp-2.0.0-py2.py3-none-any.whl (100 kB) Requirement already satisfied: pytz>=2015.7 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages (from babel>=1.3->sphinx~=3.3.1->-r docs/requirements.txt (line 8)) (2021.1) Requirement already satisfied: pycparser in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages (from cffi>=1.4.0->pygit2~=1.4.0->-r docs/requirements.txt (line 2)) (2.20) Requirement already satisfied: MarkupSafe>=0.23 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages (from Jinja2>=2.3->sphinx~=3.3.1->-r docs/requirements.txt (line 8)) (2.0.1) Requirement already satisfied: idna<4,>=2.5 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages (from requests->plantweb~=1.2.1->-r docs/requirements.txt (line 1)) (3.2) Requirement already satisfied: certifi>=2017.4.17 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages (from requests->plantweb~=1.2.1->-r docs/requirements.txt (line 1)) (2021.5.30) Requirement already satisfied: charset-normalizer~=2.0.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages (from requests->plantweb~=1.2.1->-r docs/requirements.txt (line 1)) (2.0.4) Requirement already satisfied: urllib3<1.27,>=1.21.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages (from requests->plantweb~=1.2.1->-r docs/requirements.txt (line 1)) (1.26.6) Collecting wrapt<2,>=1.10 Downloading wrapt-1.12.1.tar.gz (27 kB) Requirement already satisfied: pyparsing>=2.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages (from packaging->sphinx~=3.3.1->-r docs/requirements.txt (line 8)) (2.4.7) Building wheels for collected packages: wrapt Building wheel for wrapt (setup.py): started Building wheel for wrapt (setup.py): finished with status 'done' Created wheel for wrapt: filename=wrapt-1.12.1-cp37-cp37m-linux_x86_64.whl size=71042 sha256=4497330dd621c3e5c20e932cb67a71f45fe40aa052f0f64d01a34a2ddc973e4a Stored in directory: /tmp/pip-ephem-wheel-cache-rxaqy5uv/wheels/62/76/4c/aa25851149f3f6d9785f6c869387ad82b3fd37582fa8147ac6 Successfully built wrapt Installing collected packages: wrapt, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, docutils, sphinx, pynacl, pyjwt, pockets, deprecated, sphinxext.remoteliteralinclude, sphinxcontrib-programoutput, sphinxcontrib-napoleon, sphinx-rtd-theme, sphinx-copybutton, PyGithub, pygit2, plantweb Attempting uninstall: docutils Found existing installation: docutils 0.17.1 Uninstalling docutils-0.17.1: Successfully uninstalled docutils-0.17.1 Attempting uninstall: sphinx Found existing installation: Sphinx 1.8.5 Uninstalling Sphinx-1.8.5: Successfully uninstalled Sphinx-1.8.5 Attempting uninstall: sphinx-rtd-theme Found existing installation: sphinx-rtd-theme 0.4.3 Uninstalling sphinx-rtd-theme-0.4.3: Successfully uninstalled sphinx-rtd-theme-0.4.3 Attempting uninstall: pygit2 Found existing installation: pygit2 1.5.0 Uninstalling pygit2-1.5.0: Successfully uninstalled pygit2-1.5.0 Successfully installed PyGithub-1.55 deprecated-1.2.12 docutils-0.16 plantweb-1.2.1 pockets-0.9.1 pygit2-1.4.0 pyjwt-2.1.0 pynacl-1.4.0 sphinx-3.3.1 sphinx-copybutton-0.3.3 sphinx-rtd-theme-0.5.2 sphinxcontrib-applehelp-1.0.2 sphinxcontrib-devhelp-1.0.2 sphinxcontrib-htmlhelp-2.0.0 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-napoleon-0.7 sphinxcontrib-programoutput-0.17 sphinxcontrib-qthelp-1.0.3 sphinxext.remoteliteralinclude-0.3.0 wrapt-1.12.1 [rtd-command-info] start-time: 2021-08-03T17:15:10.330348Z, end-time: 2021-08-03T17:15:11.229570Z, duration: 0, exit-code: 0 python ./setup.py install --force running install running bdist_egg running egg_info creating emodpy_malaria.egg-info writing emodpy_malaria.egg-info/PKG-INFO writing dependency_links to emodpy_malaria.egg-info/dependency_links.txt writing requirements to emodpy_malaria.egg-info/requires.txt writing top-level names to emodpy_malaria.egg-info/top_level.txt writing manifest file 'emodpy_malaria.egg-info/SOURCES.txt' reading manifest file 'emodpy_malaria.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'emodpy_malaria.egg-info/SOURCES.txt' installing library code to build/bdist.linux-x86_64/egg running install_lib running build_py creating build creating build/lib creating build/lib/emodpy_malaria copying emodpy_malaria/vector_config.py -> build/lib/emodpy_malaria copying emodpy_malaria/__init__.py -> build/lib/emodpy_malaria copying emodpy_malaria/malaria_config.py -> build/lib/emodpy_malaria creating build/lib/tests copying tests/__init__.py -> build/lib/tests creating build/lib/emodpy_malaria/demographics copying emodpy_malaria/demographics/MalariaDemographics.py -> build/lib/emodpy_malaria/demographics copying emodpy_malaria/demographics/__init__.py -> build/lib/emodpy_malaria/demographics creating build/lib/emodpy_malaria/reporters copying emodpy_malaria/reporters/builtin.py -> build/lib/emodpy_malaria/reporters copying emodpy_malaria/reporters/__init__.py -> build/lib/emodpy_malaria/reporters creating build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/diag_survey.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/outbreakindividualmalariavargenes.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/irs.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/mosquitorelease.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/drug.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/spacespraying.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/outbreakindividualmalariagenetics.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/inputeir.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/common.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/udbednet.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/sugartrap.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/outdoorrestkill.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/bednet.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/treatment_seeking.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/ivermectin.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/drug_campaign.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/__init__.py -> build/lib/emodpy_malaria/interventions creating build/lib/tests/unittests copying tests/unittests/get_latest_schema.py -> build/lib/tests/unittests copying tests/unittests/test_malaria_reporters.py -> build/lib/tests/unittests copying tests/unittests/test_malaria_config.py -> build/lib/tests/unittests copying tests/unittests/get_unittest_coverage.py -> build/lib/tests/unittests copying tests/unittests/schema_path_file.py -> build/lib/tests/unittests copying tests/unittests/test_treatment_seeking.py -> build/lib/tests/unittests copying tests/unittests/test_malaria_interventions_as_files.py -> build/lib/tests/unittests copying tests/unittests/test_import.py -> build/lib/tests/unittests copying tests/unittests/test_malaria_interventions.py -> build/lib/tests/unittests copying tests/unittests/__init__.py -> build/lib/tests/unittests copying emodpy_malaria/malaria_drug_params.csv -> build/lib/emodpy_malaria copying emodpy_malaria/malaria_vector_species_params.csv -> build/lib/emodpy_malaria creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/egg creating build/bdist.linux-x86_64/egg/emodpy_malaria copying build/lib/emodpy_malaria/malaria_vector_species_params.csv -> build/bdist.linux-x86_64/egg/emodpy_malaria creating build/bdist.linux-x86_64/egg/emodpy_malaria/demographics copying build/lib/emodpy_malaria/demographics/MalariaDemographics.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/demographics copying build/lib/emodpy_malaria/demographics/__init__.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/demographics creating build/bdist.linux-x86_64/egg/emodpy_malaria/reporters copying build/lib/emodpy_malaria/reporters/builtin.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/reporters copying build/lib/emodpy_malaria/reporters/__init__.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/reporters copying build/lib/emodpy_malaria/vector_config.py -> build/bdist.linux-x86_64/egg/emodpy_malaria copying build/lib/emodpy_malaria/malaria_drug_params.csv -> build/bdist.linux-x86_64/egg/emodpy_malaria creating build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/diag_survey.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/outbreakindividualmalariavargenes.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/irs.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/mosquitorelease.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/drug.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/spacespraying.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/outbreakindividualmalariagenetics.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/inputeir.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/common.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/udbednet.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/sugartrap.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/outdoorrestkill.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/bednet.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/treatment_seeking.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/ivermectin.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/drug_campaign.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/__init__.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/__init__.py -> build/bdist.linux-x86_64/egg/emodpy_malaria copying build/lib/emodpy_malaria/malaria_config.py -> build/bdist.linux-x86_64/egg/emodpy_malaria creating build/bdist.linux-x86_64/egg/tests creating build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/get_latest_schema.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_malaria_reporters.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_malaria_config.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/get_unittest_coverage.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/schema_path_file.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_treatment_seeking.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_malaria_interventions_as_files.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_import.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_malaria_interventions.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/__init__.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/__init__.py -> build/bdist.linux-x86_64/egg/tests byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/demographics/MalariaDemographics.py to MalariaDemographics.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/demographics/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/reporters/builtin.py to builtin.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/reporters/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/vector_config.py to vector_config.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/diag_survey.py to diag_survey.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/outbreakindividualmalariavargenes.py to outbreakindividualmalariavargenes.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/irs.py to irs.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/mosquitorelease.py to mosquitorelease.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/drug.py to drug.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/spacespraying.py to spacespraying.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/outbreakindividualmalariagenetics.py to outbreakindividualmalariagenetics.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/inputeir.py to inputeir.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/common.py to common.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/udbednet.py to udbednet.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/sugartrap.py to sugartrap.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/outdoorrestkill.py to outdoorrestkill.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/bednet.py to bednet.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/treatment_seeking.py to treatment_seeking.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/ivermectin.py to ivermectin.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/drug_campaign.py to drug_campaign.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/malaria_config.py to malaria_config.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/get_latest_schema.py to get_latest_schema.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_malaria_reporters.py to test_malaria_reporters.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_malaria_config.py to test_malaria_config.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/get_unittest_coverage.py to get_unittest_coverage.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/schema_path_file.py to schema_path_file.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_treatment_seeking.py to test_treatment_seeking.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_malaria_interventions_as_files.py to test_malaria_interventions_as_files.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_import.py to test_import.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_malaria_interventions.py to test_malaria_interventions.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/__init__.py to __init__.cpython-37.pyc creating build/bdist.linux-x86_64/egg/EGG-INFO copying emodpy_malaria.egg-info/PKG-INFO -> build/bdist.linux-x86_64/egg/EGG-INFO copying emodpy_malaria.egg-info/SOURCES.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying emodpy_malaria.egg-info/dependency_links.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying emodpy_malaria.egg-info/requires.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying emodpy_malaria.egg-info/top_level.txt -> build/bdist.linux-x86_64/egg/EGG-INFO zip_safe flag not set; analyzing archive contents... emodpy_malaria.__pycache__.malaria_config.cpython-37: module references __file__ emodpy_malaria.__pycache__.vector_config.cpython-37: module references __file__ tests.unittests.__pycache__.schema_path_file.cpython-37: module references __file__ tests.unittests.__pycache__.test_malaria_config.cpython-37: module references __file__ tests.unittests.__pycache__.test_malaria_interventions.cpython-37: module references __file__ tests.unittests.__pycache__.test_malaria_reporters.cpython-37: module references __file__ tests.unittests.__pycache__.test_treatment_seeking.cpython-37: module references __file__ creating dist creating 'dist/emodpy_malaria-0.0.79-py3.7.egg' and adding 'build/bdist.linux-x86_64/egg' to it removing 'build/bdist.linux-x86_64/egg' (and everything under it) Processing emodpy_malaria-0.0.79-py3.7.egg creating /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages/emodpy_malaria-0.0.79-py3.7.egg Extracting emodpy_malaria-0.0.79-py3.7.egg to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Adding emodpy-malaria 0.0.79 to easy-install.pth file Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages/emodpy_malaria-0.0.79-py3.7.egg Processing dependencies for emodpy-malaria==0.0.79 Searching for emod-malaria==0.0.0 Best match: emod-malaria 0.0.0 Adding emod-malaria 0.0.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for emodpy==1.11.2 Best match: emodpy 1.11.2 Adding emodpy 1.11.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for idmtools-platform-comps==1.6.3 Best match: idmtools-platform-comps 1.6.3 Adding idmtools-platform-comps 1.6.3 to easy-install.pth file Installing comps-cli script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for keyring==23.0.1 Best match: keyring 23.0.1 Adding keyring 23.0.1 to easy-install.pth file Installing keyring script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for bs4==0.0.1 Best match: bs4 0.0.1 Adding bs4 0.0.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for idmtools==1.6.3 Best match: idmtools 1.6.3 Adding idmtools 1.6.3 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for astor==0.8.1 Best match: astor 0.8.1 Adding astor 0.8.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for click==7.1.2 Best match: click 7.1.2 Adding click 7.1.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for emod-api==1.11.7 Best match: emod-api 1.11.7 Adding emod-api 1.11.7 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for matplotlib==3.4.2 Best match: matplotlib 3.4.2 Adding matplotlib 3.4.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for astunparse==1.6.3 Best match: astunparse 1.6.3 Adding astunparse 1.6.3 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for idmtools-models==1.6.3 Best match: idmtools-models 1.6.3 Adding idmtools-models 1.6.3 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for pyCOMPS==2.4.1 Best match: pyCOMPS 2.4.1 Adding pyCOMPS 2.4.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for Jinja2==2.11.3 Best match: Jinja2 2.11.3 Adding Jinja2 2.11.3 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for tqdm==4.62.0 Best match: tqdm 4.62.0 Adding tqdm 4.62.0 to easy-install.pth file Installing tqdm script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for jeepney==0.7.1 Best match: jeepney 0.7.1 Adding jeepney 0.7.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for importlib-metadata==4.6.3 Best match: importlib-metadata 4.6.3 Adding importlib-metadata 4.6.3 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for SecretStorage==3.3.1 Best match: SecretStorage 3.3.1 Adding SecretStorage 3.3.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for beautifulsoup4==4.9.3 Best match: beautifulsoup4 4.9.3 Adding beautifulsoup4 4.9.3 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for backoff==1.10.0 Best match: backoff 1.10.0 Adding backoff 1.10.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for tabulate==0.8.9 Best match: tabulate 0.8.9 Adding tabulate 0.8.9 to easy-install.pth file Installing tabulate script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for diskcache==5.1.0 Best match: diskcache 5.1.0 Adding diskcache 5.1.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for packaging==20.9 Best match: packaging 20.9 Adding packaging 20.9 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for coloredlogs==15.0.1 Best match: coloredlogs 15.0.1 Adding coloredlogs 15.0.1 to easy-install.pth file Installing coloredlogs script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for pygit2==1.4.0 Best match: pygit2 1.4.0 Adding pygit2 1.4.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for numpy==1.21.1 Best match: numpy 1.21.1 Adding numpy 1.21.1 to easy-install.pth file Installing f2py script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Installing f2py3 script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Installing f2py3.7 script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for pipreqs==0.4.10 Best match: pipreqs 0.4.10 Adding pipreqs 0.4.10 to easy-install.pth file Installing pipreqs script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for pluggy==0.13.1 Best match: pluggy 0.13.1 Adding pluggy 0.13.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for pandas==1.1.5 Best match: pandas 1.1.5 Adding pandas 1.1.5 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for more-itertools==8.7.0 Best match: more-itertools 8.7.0 Adding more-itertools 8.7.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for PyYAML==5.4.1 Best match: PyYAML 5.4.1 Adding PyYAML 5.4.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for pyproj==3.1.0 Best match: pyproj 3.1.0 Adding pyproj 3.1.0 to easy-install.pth file Installing pyproj script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for lz4==3.1.3 Best match: lz4 3.1.3 Adding lz4 3.1.3 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for geographiclib==1.52 Best match: geographiclib 1.52 Adding geographiclib 1.52 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for scipy==1.7.1 Best match: scipy 1.7.1 Adding scipy 1.7.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for Shapely==1.7.1 Best match: Shapely 1.7.1 Adding Shapely 1.7.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for kiwisolver==1.3.1 Best match: kiwisolver 1.3.1 Adding kiwisolver 1.3.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for cycler==0.10.0 Best match: cycler 0.10.0 Adding cycler 0.10.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for pyparsing==2.4.7 Best match: pyparsing 2.4.7 Adding pyparsing 2.4.7 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for python-dateutil==2.8.2 Best match: python-dateutil 2.8.2 Adding python-dateutil 2.8.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for Pillow==8.3.1 Best match: Pillow 8.3.1 Adding Pillow 8.3.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for six==1.16.0 Best match: six 1.16.0 Adding six 1.16.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for wheel==0.36.2 Best match: wheel 0.36.2 Adding wheel 0.36.2 to easy-install.pth file Installing wheel script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for requests==2.26.0 Best match: requests 2.26.0 Adding requests 2.26.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for future==0.18.2 Best match: future 0.18.2 Adding future 0.18.2 to easy-install.pth file Installing futurize script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Installing pasteurize script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for pytz==2021.1 Best match: pytz 2021.1 Adding pytz 2021.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for xdg==5.1.1 Best match: xdg 5.1.1 Adding xdg 5.1.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for MarkupSafe==2.0.1 Best match: MarkupSafe 2.0.1 Adding MarkupSafe 2.0.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for zipp==3.5.0 Best match: zipp 3.5.0 Adding zipp 3.5.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for typing-extensions==3.10.0.0 Best match: typing-extensions 3.10.0.0 Adding typing-extensions 3.10.0.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for cryptography==3.4.7 Best match: cryptography 3.4.7 Adding cryptography 3.4.7 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for soupsieve==2.2.1 Best match: soupsieve 2.2.1 Adding soupsieve 2.2.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for humanfriendly==9.2 Best match: humanfriendly 9.2 Adding humanfriendly 9.2 to easy-install.pth file Installing humanfriendly script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for cffi==1.14.6 Best match: cffi 1.14.6 Adding cffi 1.14.6 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for cached-property==1.5.2 Best match: cached-property 1.5.2 Adding cached-property 1.5.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for docopt==0.6.2 Best match: docopt 0.6.2 Adding docopt 0.6.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for yarg==0.1.9 Best match: yarg 0.1.9 Adding yarg 0.1.9 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for certifi==2021.5.30 Best match: certifi 2021.5.30 Adding certifi 2021.5.30 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for charset-normalizer==2.0.4 Best match: charset-normalizer 2.0.4 Adding charset-normalizer 2.0.4 to easy-install.pth file Installing normalizer script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for idna==3.2 Best match: idna 3.2 Adding idna 3.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for urllib3==1.26.6 Best match: urllib3 1.26.6 Adding urllib3 1.26.6 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for pycparser==2.20 Best match: pycparser 2.20 Adding pycparser 2.20 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Finished processing dependencies for emodpy-malaria==0.0.79 [rtd-command-info] start-time: 2021-08-03T17:15:12.421564Z, end-time: 2021-08-03T17:15:12.492496Z, duration: 0, exit-code: 0 cat docs/conf.py # -*- coding: utf-8 -*- # # Sphinx Demo docs build configuration file, created by # sphinx-quickstart on Fri Aug 26 16:52:16 2016. # # This file is execfile()d with the current directory set to its # containing dir. # # Note that not all possible configuration values are present in this # autogenerated file. # # All configuration values have a default; values that are commented out # serve to show the default. # If extensions (or modules to document with autodoc) are in another directory, # add these directories to sys.path here. If the directory is relative to the # docs root, use os.path.abspath to make it absolute, like shown here. # import os import subprocess import sys import sphinx_rtd_theme import configparser from datetime import datetime from urllib.request import urlretrieve if sys.platform in ["linux", "darwin"]: subprocess.check_output(["make", "generate-api"], cwd=os.path.dirname(os.path.abspath(__file__))) else: subprocess.check_output(["make.bat", "generate-api"], cwd=os.path.dirname(os.path.abspath(__file__))) # -- General configuration ------------------------------------------------ tags.add('emodpymalaria') # If your docs needs a minimal Sphinx version, state it here. # # needs_sphinx = '1.0' # Add any Sphinx extension module names here, as strings. They can be # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom # ones. extensions = [ 'sphinx.ext.mathjax', 'sphinx.ext.githubpages', 'sphinx.ext.autodoc', 'sphinxcontrib.napoleon', 'sphinx.ext.todo', 'plantweb.directive', 'sphinxcontrib.programoutput', 'sphinx_copybutton', 'sphinx.ext.intersphinx', 'sphinxext.remoteliteralinclude' ] plantuml = 'plantweb' autodoc_default_options = { 'member-order': 'bysource', 'members': None, 'exclude-members': '__all__' } autodoc_mock_imports = [] napoleon_google_docstring = True # napoleon_numpy_docstring = True # Add any paths that contain templates here, relative to this directory. templates_path = ['_templates'] # The suffix(es) of source filenames. # You can specify multiple suffix as a list of string: # # source_suffix = ['.rst', '.md'] source_suffix = '.rst' # The encoding of source files. # # source_encoding = 'utf-8-sig' # The master toctree document. master_doc = 'index' # General information about the project. project = u'emodpy-malaria' copyright = f'1999 - {datetime.today().year}, Bill & Melinda Gates Foundation. All rights reserved.' author = u'Institute for Disease Modeling' # The version info for the project you're documenting, acts as replacement for # |version| and |release|, also used in various other places throughout the # built documents. # # The short X.Y version. #current_path = os.path.dirname(__file__) #version_path = os.path.join(current_path, '..', '.bumpversion.cfg') #config = configparser.ConfigParser() #config.read(version_path) #version = config['bumpversion']['current_version'] # The full version, including alpha/beta/rc tags. # release = u'1.0' # The language for content autogenerated by Sphinx. Refer to docs # for a list of supported languages. # # This is also used if you do content translation via gettext catalogs. # Usually you set "language" from the command line for these cases. language = None # There are two options for replacing |today|: either, you set today to some # non-false value, then it is used: # # today = '' # # Else, today_fmt is used as the format for a strftime call. # # today_fmt = '%B %d, %Y' # List of patterns, relative to source directory, that match files and # directories to ignore when looking for source files. # This patterns also effect to html_static_path and html_extra_path exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store'] # The reST default role (used for this markup: `text`) to use for all # documents. # # default_role = None # If true, '()' will be appended to :func: etc. cross-reference text. # # add_function_parentheses = True # If true, the current module name will be prepended to all description # unit titles (such as .. function::). # # add_module_names = True # If true, sectionauthor and moduleauthor directives will be shown in the # output. They are ignored by default. # # show_authors = False # The name of the Pygments (syntax highlighting) style to use. pygments_style = 'sphinx' # A list of ignored prefixes for module index sorting. # modindex_common_prefix = [] # If true, keep warnings as "system message" paragraphs in the built documents. # keep_warnings = False # If true, `todo` and `todoList` produce output, else they produce nothing. todo_include_todos = False # RST epilog is added to the end of every topic. Useful for replace # directives to use across the docset. rst_epilog = "\n.. include:: /variables.txt" # -- Options for HTML output ---------------------------------------------- # The theme to use for HTML and HTML Help pages. See the docs for # a list of builtin themes. # html_theme = 'sphinx_rtd_theme' # Theme options are theme-specific and customize the look and feel of a theme # further. For a list of options available for each theme, see the # docs. # # # html_theme_options = { # } # Add any paths that contain custom themes here, relative to this directory. html_theme_path = [sphinx_rtd_theme.get_html_theme_path()] # The name for this set of Sphinx documents. # " v docs" by default. # # html_title = u'Sphinx Demo v1.0' # A shorter title for the navigation bar. Default is the same as html_title. # # html_short_title = None # The name of an image file (relative to this directory) to place at the top # of the sidebar. # html_logo = "images/IDM_white.png" # The name of an image file (relative to this directory) to use as a favicon of # the docs. This file should be a Windows icon file (.ico) being 16x16 or 32x32 # pixels large. # html_favicon = "images/favicon.ico" # Add any paths that contain custom static files (such as style sheets) here, # relative to this directory. They are copied after the builtin static files, # so a file named "default.css" will overwrite the builtin "default.css". html_static_path = ['_static'] html_context = { 'css_files': [ '_static/theme_overrides.css', '_static/copy_button.css' ] } html_js_files = ['show_block_by_os.js'] # Add any extra paths that contain custom files (such as robots.txt or # .htaccess) here, relative to this directory. These files are copied # directly to the root of the docs. # # html_extra_path = [] # If not None, a 'Last updated on:' timestamp is inserted at every page # bottom, using the given strftime format. # The empty string is equivalent to '%b %d, %Y'. # # html_last_updated_fmt = None # If true, SmartyPants will be used to convert quotes and dashes to # typographically correct entities. # # html_use_smartypants = True # Custom sidebar templates, maps document names to template names. # # html_sidebars = {} # Additional templates that should be rendered to pages, maps page names to # template names. # # html_additional_pages = {} # If false, no module index is generated. # # html_domain_indices = True # If false, no index is generated. # # html_use_index = True # If true, the index is split into individual pages for each letter. # # html_split_index = False # If true, links to the reST sources are added to the pages. # html_show_sourcelink = False # If true, "Created using Sphinx" is shown in the HTML footer. Default is True. # html_show_sphinx = False # If true, "(C) Copyright ..." is shown in the HTML footer. Default is True. # # html_show_copyright = True # If true, an OpenSearch description file will be output, and all pages will # contain a tag referring to it. The value of this option must be the # base URL from which the finished HTML is served. # html_use_opensearch = 'www.idmod.org/docs/' # This is the file name suffix for HTML files (e.g. ".xhtml"). # html_file_suffix = None # Language to be used for generating the HTML full-text search index. # Sphinx supports the following languages: # 'da', 'de', 'en', 'es', 'fi', 'fr', 'hu', 'it', 'ja' # 'nl', 'no', 'pt', 'ro', 'ru', 'sv', 'tr', 'zh' # # html_search_language = 'en' # A dictionary with options for the search language support, empty by default. # 'ja' uses this config value. # 'zh' user can custom change `jieba` dictionary path. # # html_search_options = {'type': 'default'} # The name of a javascript file (relative to the configuration directory) that # implements a search results scorer. If empty, the default will be used. # # html_search_scorer = 'scorer.js' # Output file base name for HTML help builder. htmlhelp_basename = 'emodpy-malaria' # -- Options for LaTeX output --------------------------------------------- latex_elements = { # The paper size ('letterpaper' or 'a4paper'). # # 'papersize': 'letterpaper', # The font size ('10pt', '11pt' or '12pt'). # # 'pointsize': '10pt', # Additional stuff for the LaTeX preamble. # # 'preamble': '', # Latex figure (float) alignment # # 'figure_align': 'htbp', } # Grouping the document tree into LaTeX files. List of tuples # (source start file, target name, title, # author, documentclass [howto, manual, or own class]). latex_documents = [ (master_doc, 'emodpy-malaria-docs.tex', u'emodpy-malaria', u'Institute for Disease Modeling', 'manual'), ] # The name of an image file (relative to this directory) to place at the top of # the title page. # # latex_logo = None # For "manual" documents, if this is true, then toplevel headings are parts, # not chapters. # # latex_use_parts = False # If true, show page references after internal links. # # latex_show_pagerefs = False # If true, show URL addresses after external links. # # latex_show_urls = False # Documents to append as an appendix to all manuals. # # latex_appendices = [] # It false, will not define \strong, \code, itleref, \crossref ... but only # \sphinxstrong, ..., \sphinxtitleref, ... To help avoid clash with user added # packages. # # latex_keep_old_macro_names = True # If false, no module index is generated. # # latex_domain_indices = True # -- Options for manual page output --------------------------------------- # One entry per manual page. List of tuples # (source start file, name, description, authors, manual section). man_pages = [ (master_doc, 'emodpy-malaria-docs', u'emodpy-malaria', [author], 1) ] # If true, show URL addresses after external links. # man_show_urls = True # -- Options for Texinfo output ------------------------------------------- # Grouping the document tree into Texinfo files. List of tuples # (source start file, target name, title, author, # dir menu entry, description, category) texinfo_documents = [ (master_doc, 'emodpy-malaria-docs', u'emodpy-malaria', author, 'Institute for Disease Modeling', 'How to use emodpy for malaria simulations.', 'Miscellaneous'), ] # Documents to append as an appendix to all manuals. # # texinfo_appendices = [] # If false, no module index is generated. # # texinfo_domain_indices = True # How to display URL addresses: 'footnote', 'no', or 'inline'. # # texinfo_show_urls = 'footnote' # If true, do not generate a @detailmenu in the "Top" node's menu. # # texinfo_no_detailmenu = False # Example configuration for intersphinx: refer to the Python standard library. intersphinx_mapping = {'python': ('https://docs.python.org/3', None), 'emod_api': ('https://docs.idmod.org/projects/emod-api/en/latest/', None), 'emodpy': ('https://docs.idmod.org/projects/emodpy/en/latest/', None), 'idmtools': ('https://docs.idmod.org/projects/idmtools/en/latest/', None), 'emod-malaria': ('https://docs.idmod.org/projects/emod-malaria/en/latest/', None), 'pycomps': ('https://docs.idmod.org/projects/pycomps/en/latest/', None) } ########################################################################### # auto-created readthedocs.org specific configuration # ########################################################################### # # The following code was added during an automated build on readthedocs.org # It is auto created and injected for every build. The result is based on the # conf.py.tmpl file found in the readthedocs.org codebase: # https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl # # Note: this file should't rely on extra depencies. import importlib import sys import os.path # Borrowed from six. PY3 = sys.version_info[0] == 3 string_types = str if PY3 else basestring from sphinx import version_info # Get suffix for proper linking to GitHub # This is deprecated in Sphinx 1.3+, # as each page can have its own suffix if globals().get('source_suffix', False): if isinstance(source_suffix, string_types): SUFFIX = source_suffix elif isinstance(source_suffix, (list, tuple)): # Sphinx >= 1.3 supports list/tuple to define multiple suffixes SUFFIX = source_suffix[0] elif isinstance(source_suffix, dict): # Sphinx >= 1.8 supports a mapping dictionary for multiple suffixes SUFFIX = list(source_suffix.keys())[0] # make a ``list()`` for py2/py3 compatibility else: # default to .rst SUFFIX = '.rst' else: SUFFIX = '.rst' # Add RTD Static Path. Add to the end because it overwrites previous files. if not 'html_static_path' in globals(): html_static_path = [] if os.path.exists('_static'): html_static_path.append('_static') # Add RTD Theme only if they aren't overriding it already using_rtd_theme = ( ( 'html_theme' in globals() and html_theme in ['default'] and # Allow people to bail with a hack of having an html_style 'html_style' not in globals() ) or 'html_theme' not in globals() ) if using_rtd_theme: theme = importlib.import_module('sphinx_rtd_theme') html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} if 'html_theme_path' in globals(): html_theme_path.append(theme.get_html_theme_path()) else: html_theme_path = [theme.get_html_theme_path()] if globals().get('websupport2_base_url', False): websupport2_base_url = 'https://readthedocs.com/websupport' websupport2_static_url = 'https://assets.readthedocs.com/' #Add project information to the template context. context = { 'using_theme': using_rtd_theme, 'html_theme': html_theme, 'current_version': "latest", 'version_slug': "latest", 'MEDIA_URL': "https://media.readthedocs.com/media/", 'STATIC_URL': "https://assets.readthedocs.com/", 'PRODUCTION_DOMAIN': "readthedocs.com", 'versions': [ ("latest", "/en/latest/"), ("stable", "/en/stable/"), ("v0.0.61", "/en/v0.0.61/"), ("v0.0.50", "/en/v0.0.50/"), ("0.0.50", "/en/0.0.50/"), ("v0.0.48", "/en/v0.0.48/"), ("v0.0.45", "/en/v0.0.45/"), ("v0.0.44", "/en/v0.0.44/"), ("v0.0.29", "/en/v0.0.29/"), ("v0.0.18", "/en/v0.0.18/"), ], 'downloads': [ ("pdf", "//docs.idmod.org/_/downloads/emodpy-malaria/en/latest/pdf/"), ("html", "//docs.idmod.org/_/downloads/emodpy-malaria/en/latest/htmlzip/"), ], 'subprojects': [ ], 'slug': 'institute-for-disease-modeling-emodpy-malaria', 'name': u'emodpy-malaria', 'rtd_language': u'en', 'programming_language': u'words', 'canonical_url': 'https://docs.idmod.org/projects/emodpy-malaria/en/latest/', 'analytics_code': 'UA-87656833-3', 'single_version': False, 'conf_py_path': '/docs/', 'api_host': 'https://readthedocs.com', 'github_user': 'InstituteforDiseaseModeling', 'proxied_api_host': '/_', 'github_repo': 'emodpy-malaria', 'github_version': 'main', 'display_github': True, 'bitbucket_user': 'None', 'bitbucket_repo': 'None', 'bitbucket_version': 'main', 'display_bitbucket': False, 'gitlab_user': 'None', 'gitlab_repo': 'None', 'gitlab_version': 'main', 'display_gitlab': False, 'READTHEDOCS': True, 'using_theme': (html_theme == "default"), 'new_theme': (html_theme == "sphinx_rtd_theme"), 'source_suffix': SUFFIX, 'ad_free': False, 'docsearch_disabled': False, 'user_analytics_code': 'UA-87656833-3', 'global_analytics_code': 'UA-17997319-2', 'commit': '29f2abba', } # For sphinx >=1.8 we can use html_baseurl to set the canonical URL. # https://www.sphinx-doc.org/en/master/usage/configuration.html#confval-html_baseurl if version_info >= (1, 8): if not globals().get('html_baseurl'): html_baseurl = context['canonical_url'] context['canonical_url'] = None if 'html_context' in globals(): html_context.update(context) else: html_context = context # Add custom RTD extension if 'extensions' in globals(): # Insert at the beginning because it can interfere # with other extensions. # See https://github.com/rtfd/readthedocs.org/pull/4054 extensions.insert(0, "readthedocs_ext.readthedocs") else: extensions = ["readthedocs_ext.readthedocs"] # Add External version warning banner to the external version documentation if 'branch' == 'external': extensions.insert(1, "readthedocs_ext.external_version_warning") readthedocs_vcs_url = 'None' readthedocs_build_url = 'https://readthedocs.com/projects/institute-for-disease-modeling-emodpy-malaria/builds/691031/' project_language = 'en' # User's Sphinx configurations language_user = globals().get('language', None) latex_engine_user = globals().get('latex_engine', None) latex_elements_user = globals().get('latex_elements', None) # Remove this once xindy gets installed in Docker image and XINDYOPS # env variable is supported # https://github.com/rtfd/readthedocs-docker-images/pull/98 latex_use_xindy = False chinese = any([ language_user in ('zh_CN', 'zh_TW'), project_language in ('zh_CN', 'zh_TW'), ]) japanese = any([ language_user == 'ja', project_language == 'ja', ]) if chinese: latex_engine = latex_engine_user or 'xelatex' latex_elements_rtd = { 'preamble': '\\usepackage[UTF8]{ctex}\n', } latex_elements = latex_elements_user or latex_elements_rtd elif japanese: latex_engine = latex_engine_user or 'platex' # Make sure our build directory is always excluded exclude_patterns = globals().get('exclude_patterns', []) exclude_patterns.extend(['_build']) [rtd-command-info] start-time: 2021-08-03T17:15:12.595169Z, end-time: 2021-08-03T17:15:18.124428Z, duration: 5, exit-code: 0 python -m sphinx -T -E -W --keep-going -b html -d _build/doctrees -D language=en . _build/html Running Sphinx v3.3.1 rm: cannot remove 'modules.rst': No such file or directory make: [generate-api] Error 1 (ignored) rm: cannot remove 'emodpy_malaria_index.rst': No such file or directory make: [generate-api] Error 1 (ignored) loading translations [en]... done making output directory... done loading intersphinx inventory from https://docs.python.org/3/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emod-api/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emodpy/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/idmtools/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emod-malaria/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/pycomps/en/latest/objects.inv... building [mo]: targets for 0 po files that are out of date building [html]: targets for 29 source files that are out of date updating environment: [new config] 29 added, 0 changed, 0 removed reading sources... [ 3%] emodpy_malaria reading sources... [ 6%] emodpy_malaria.demographics reading sources... [ 10%] emodpy_malaria.demographics.MalariaDemographics reading sources... [ 13%] emodpy_malaria.interventions reading sources... [ 17%] emodpy_malaria.interventions.bednet reading sources... [ 20%] emodpy_malaria.interventions.common reading sources... [ 24%] emodpy_malaria.interventions.diag_survey reading sources... [ 27%] emodpy_malaria.interventions.drug reading sources... [ 31%] emodpy_malaria.interventions.drug_campaign reading sources... [ 34%] emodpy_malaria.interventions.inputeir reading sources... [ 37%] emodpy_malaria.interventions.irs reading sources... [ 41%] emodpy_malaria.interventions.ivermectin reading sources... [ 44%] emodpy_malaria.interventions.mosquitorelease reading sources... [ 48%] emodpy_malaria.interventions.outbreakindividualmalariagenetics reading sources... [ 51%] emodpy_malaria.interventions.outbreakindividualmalariavargenes reading sources... [ 55%] emodpy_malaria.interventions.outdoorrestkill reading sources... [ 58%] emodpy_malaria.interventions.spacespraying reading sources... [ 62%] emodpy_malaria.interventions.sugartrap reading sources... [ 65%] emodpy_malaria.interventions.treatment_seeking reading sources... [ 68%] emodpy_malaria.interventions.udbednet reading sources... [ 72%] emodpy_malaria.malaria_config reading sources... [ 75%] emodpy_malaria.reporters reading sources... [ 79%] emodpy_malaria.reporters.builtin /!\ WARNING: File 'idmtools.ini' Not Found! For details on how to configure idmtools, see https://docs.idmod.org/projects/idmtools/en/v1.6.3/configuration.html for details on how to configure idmtools. reading sources... [ 82%] emodpy_malaria.vector_config reading sources... [ 86%] emodpy_malaria_index reading sources... [ 89%] faq reading sources... [ 93%] index reading sources... [ 96%] installation reading sources... [100%] installation-basic looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 3%] emodpy_malaria writing output... [ 6%] emodpy_malaria.demographics writing output... [ 10%] emodpy_malaria.demographics.MalariaDemographics writing output... [ 13%] emodpy_malaria.interventions writing output... [ 17%] emodpy_malaria.interventions.bednet writing output... [ 20%] emodpy_malaria.interventions.common writing output... [ 24%] emodpy_malaria.interventions.diag_survey writing output... [ 27%] emodpy_malaria.interventions.drug writing output... [ 31%] emodpy_malaria.interventions.drug_campaign writing output... [ 34%] emodpy_malaria.interventions.inputeir writing output... [ 37%] emodpy_malaria.interventions.irs writing output... [ 41%] emodpy_malaria.interventions.ivermectin writing output... [ 44%] emodpy_malaria.interventions.mosquitorelease writing output... [ 48%] emodpy_malaria.interventions.outbreakindividualmalariagenetics writing output... [ 51%] emodpy_malaria.interventions.outbreakindividualmalariavargenes writing output... [ 55%] emodpy_malaria.interventions.outdoorrestkill writing output... [ 58%] emodpy_malaria.interventions.spacespraying writing output... [ 62%] emodpy_malaria.interventions.sugartrap writing output... [ 65%] emodpy_malaria.interventions.treatment_seeking writing output... [ 68%] emodpy_malaria.interventions.udbednet writing output... [ 72%] emodpy_malaria.malaria_config writing output... [ 75%] emodpy_malaria.reporters writing output... [ 79%] emodpy_malaria.reporters.builtin writing output... [ 82%] emodpy_malaria.vector_config writing output... [ 86%] emodpy_malaria_index writing output... [ 89%] faq writing output... [ 93%] index writing output... [ 96%] installation writing output... [100%] installation-basic generating indices... genindex py-modindex done writing additional pages... search opensearch done copying static files... done copying extra files... done dumping search index in English (code: en)... done dumping object inventory... done build succeeded. The HTML pages are in _build/html. Updating searchtools for Read the Docs search... [rtd-command-info] start-time: 2021-08-03T17:15:18.265939Z, end-time: 2021-08-03T17:15:20.239911Z, duration: 1, exit-code: 0 python -m sphinx -T -W --keep-going -b readthedocssinglehtmllocalmedia -d _build/doctrees -D language=en . _build/localmedia Running Sphinx v3.3.1 rm: cannot remove 'modules.rst': No such file or directory make: [generate-api] Error 1 (ignored) loading translations [en]... done making output directory... done loading pickled environment... done building [mo]: targets for 0 po files that are out of date building [readthedocssinglehtmllocalmedia]: all documents updating environment: 0 added, 1 changed, 0 removed reading sources... [100%] emodpy_malaria_index looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done assembling single document... installation installation-basic faq emodpy_malaria_index emodpy_malaria emodpy_malaria.demographics emodpy_malaria.demographics.MalariaDemographics emodpy_malaria.interventions emodpy_malaria.interventions.bednet emodpy_malaria.interventions.common emodpy_malaria.interventions.diag_survey emodpy_malaria.interventions.drug emodpy_malaria.interventions.drug_campaign emodpy_malaria.interventions.inputeir emodpy_malaria.interventions.irs emodpy_malaria.interventions.ivermectin emodpy_malaria.interventions.mosquitorelease emodpy_malaria.interventions.outbreakindividualmalariagenetics emodpy_malaria.interventions.outbreakindividualmalariavargenes emodpy_malaria.interventions.outdoorrestkill emodpy_malaria.interventions.spacespraying emodpy_malaria.interventions.sugartrap emodpy_malaria.interventions.treatment_seeking emodpy_malaria.interventions.udbednet emodpy_malaria.reporters emodpy_malaria.reporters.builtin emodpy_malaria.malaria_config emodpy_malaria.vector_config done writing... done writing additional files... opensearchdone copying static files... done copying extra files... done dumping object inventory... done build succeeded. The HTML page is in _build/localmedia. Updating searchtools for Read the Docs search... [rtd-command-info] start-time: 2021-08-03T17:15:20.386550Z, end-time: 2021-08-03T17:15:22.264858Z, duration: 1, exit-code: 0 python -m sphinx -b latex -D language=en -d _build/doctrees . _build/latex Running Sphinx v3.3.1 rm: cannot remove 'modules.rst': No such file or directory make: [generate-api] Error 1 (ignored) loading translations [en]... done making output directory... done loading pickled environment... done building [mo]: targets for 0 po files that are out of date building [latex]: all documents updating environment: 0 added, 1 changed, 0 removed reading sources... [100%] emodpy_malaria_index looking for now-outdated files... none found pickling environment... done checking consistency... done processing emodpy-malaria-docs.tex... index installation installation-basic faq emodpy_malaria_index emodpy_malaria emodpy_malaria.demographics emodpy_malaria.demographics.MalariaDemographics emodpy_malaria.interventions emodpy_malaria.interventions.bednet emodpy_malaria.interventions.common emodpy_malaria.interventions.diag_survey emodpy_malaria.interventions.drug emodpy_malaria.interventions.drug_campaign emodpy_malaria.interventions.inputeir emodpy_malaria.interventions.irs emodpy_malaria.interventions.ivermectin emodpy_malaria.interventions.mosquitorelease emodpy_malaria.interventions.outbreakindividualmalariagenetics emodpy_malaria.interventions.outbreakindividualmalariavargenes emodpy_malaria.interventions.outdoorrestkill emodpy_malaria.interventions.spacespraying emodpy_malaria.interventions.sugartrap emodpy_malaria.interventions.treatment_seeking emodpy_malaria.interventions.udbednet emodpy_malaria.reporters emodpy_malaria.reporters.builtin emodpy_malaria.malaria_config emodpy_malaria.vector_config resolving references... done writing... done copying TeX support files... copying TeX support files... done build succeeded. The LaTeX files are in _build/latex. Run 'make' in that directory to run these through (pdf)latex (use `make latexpdf' here to do that automatically). WARNING: Missing searchtools: /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/checkouts/latest/docs/_build/latex/_static/searchtools.js [rtd-command-info] start-time: 2021-08-03T17:15:22.497301Z, end-time: 2021-08-03T17:15:22.574527Z, duration: 0, exit-code: 0 cat latexmkrc $latex = 'latex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $pdflatex = 'pdflatex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $lualatex = 'lualatex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $xelatex = 'xelatex --no-pdf ' . $ENV{'LATEXOPTS'} . ' %O %S'; $makeindex = 'makeindex -s python.ist %O -o %D %S'; add_cus_dep( "glo", "gls", 0, "makeglo" ); sub makeglo { return system( "makeindex -s gglo.ist -o '$_[0].gls' '$_[0].glo'" ); } [rtd-command-info] start-time: 2021-08-03T17:15:22.678122Z, end-time: 2021-08-03T17:15:25.159678Z, duration: 2, exit-code: 0 latexmk -r latexmkrc -pdf -f -dvi- -ps- -jobname=institute-for-disease-modeling-emodpy-malaria -interaction=nonstopmode Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 1, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 2, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 3, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 4, chunk 1. Subroutine makeglo redefined at (eval 11) line 7, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 1, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 2, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 3, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 4, chunk 1. Latexmk: This is Latexmk, John Collins, 1 January 2015, version: 4.41. File::Glob::glob() will disappear in perl 5.30. Use File::Glob::bsd_glob() instead. at /usr/bin/latexmk line 7482. Rule 'pdflatex': Rules & subrules not known to be previously run: pdflatex Rule 'pdflatex': The following rules & subrules became out-of-date: 'pdflatex' ------------ Run number 1 of rule 'pdflatex' ------------ ------------ Running 'pdflatex -interaction=nonstopmode -recorder --jobname="institute-for-disease-modeling-emodpy-malaria" "emodpy-malaria-docs.tex"' ------------ Latexmk: applying rule 'pdflatex'... This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./emodpy-malaria-docs.tex LaTeX2e <2017-04-15> Babel <3.18> and hyphenation patterns for 84 language(s) loaded. 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[10] Underfull \hbox (badness 10000) in paragraph at lines 616--616 [][]\T1/ptm/m/it/10 float[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 block-ing_pre decay_duration: Underfull \hbox (badness 10000) in paragraph at lines 616--616 [][]\T1/ptm/m/it/10 int[][] = 365\T1/ptm/m/n/10 , \T1/ptm/m/it/10 killing_decay _rate: [][]float[][] Underfull \hbox (badness 10000) in paragraph at lines 616--616 \T1/ptm/m/it/10 = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 killing_predecay_duration: [][]int[][] Underfull \hbox (badness 10000) in paragraph at lines 616--616 \T1/ptm/m/it/10 = 365\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-pelling_decay_rate: [] []float[][] = Underfull \hbox (badness 10000) in paragraph at lines 616--616 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-pelling_predecay_duration: [][]int[][] = Underfull \hbox (badness 5091) in paragraph at lines 616--616 \T1/ptm/m/it/10 365\T1/ptm/m/n/10 , \T1/ptm/m/it/10 us-age_decay_rate: [][]floa t[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 us- [11] Underfull \hbox (badness 10000) in paragraph at lines 693--693 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age=1.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 693--693 \T1/ptm/m/it/10 block-ing_eff=1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 killing_eff=1\T 1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 736--736 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day\T1/ptm/m/n/10 , [12] Underfull \hbox (badness 10000) in paragraph at lines 767--767 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Mea-sure- Underfull \hbox (badness 10000) in paragraph at lines 767--767 \T1/ptm/m/it/10 ment_Sensitivity\T1/ptm/m/n/10 , \T1/ptm/m/it/10 De-tec- Underfull \hbox (badness 10000) in paragraph at lines 767--767 \T1/ptm/m/it/10 tion_Threshold\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Di-ag-nos- Overfull \hbox (31.21352pt too wide) in paragraph at lines 836--836 \T1/ptm/m/it/10 tsteps_btwn_repetitions: Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 get: [][]ob-ject[][] Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Ev-ery-one\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 6364) in paragraph at lines 836--836 \T1/ptm/m/it/10 start_day: [][]int[][] Underfull \hbox (badness 5203) in paragraph at lines 836--836 \T1/ptm/m/it/10 = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 di-ag-nos- Overfull \hbox (63.55446pt too wide) in paragraph at lines 836--836 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 BLOOD_SMEAR_PARASITES\TS1/ptm/m/it/10 '\T1/pt m/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 di-ag-nos- Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 tic_threshold: Underfull \hbox (badness 10000) in paragraph at lines 836--836 [][]\T1/ptm/m/it/10 float[][] = 40\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 mea-sure- Overfull \hbox (1.01384pt too wide) in paragraph at lines 836--836 \T1/ptm/m/it/10 ment_sensitivity: Underfull \hbox (badness 10000) in paragraph at lines 836--836 [][]\T1/ptm/m/it/10 float[][] = 0.1\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 event_name: Underfull \hbox (badness 10000) in paragraph at lines 836--836 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Di-ag- Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 nos-tic Sur-vey\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 6364) in paragraph at lines 836--836 \T1/ptm/m/it/10 node_ids: [][]list[][] Overfull \hbox (27.58405pt too wide) in paragraph at lines 836--836 \T1/ptm/m/it/10 tive_diagnosis_configs: Underfull \hbox (badness 10000) in paragraph at lines 836--836 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 neg-a- Overfull \hbox (27.58405pt too wide) in paragraph at lines 836--836 \T1/ptm/m/it/10 tive_diagnosis_configs: Overfull \hbox (6.95406pt too wide) in paragraph at lines 836--836 \T1/ptm/m/it/10 ceived_test_event: Underfull \hbox (badness 10000) in paragraph at lines 836--836 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Re- Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 ceived_Test\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 IP_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 836--836 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 NP_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 836--836 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 dis-qual-i-fy- Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 ing_properties: Overfull \hbox (9.814pt too wide) in paragraph at lines 836--836 \T1/ptm/m/it/10 ger_condition_list: Underfull \hbox (badness 10000) in paragraph at lines 836--836 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 lis-ten- Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 ing_duration: Overfull \hbox (29.97432pt too wide) in paragraph at lines 836--836 \T1/ptm/m/it/10 gered_campaign_delay: Underfull \hbox (badness 10000) in paragraph at lines 836--836 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , Overfull \hbox (47.68343pt too wide) in paragraph at lines 836--836 \T1/ptm/m/it/10 check_eligibility_at_trigger: Overfull \hbox (9.71407pt too wide) in paragraph at lines 836--836 \T1/ptm/m/it/10 pire_recent_drugs: LaTeX Warning: Hyper 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[13] [14] Underfull \hbox (badness 10000) in paragraph at lines 869--872 []\T1/pcr/b/n/10 diagnostic_type \T1/ptm/m/n/10 ^^U Type of malaria di-ag-nos-t ic used. De-fault is Underfull \hbox (badness 10000) in paragraph at lines 911--914 []\T1/ptm/m/n/10 In ga-me-to-cytes/microliter, use mea-sure- LaTeX Warning: Hyper reference `emodpy_malaria.interventions.common:emodpy_mala ria.interventions.common.MalariaDiagnostic' on page 15 undefined on input line 935. Underfull \hbox (badness 10000) in paragraph at lines 934--936 []\T1/pcr/b/n/10 measurement_sensitivity \T1/ptm/m/n/10 ^^U Set-ting for \T1/pt m/b/n/10 Mea-sure-ment_Sensitivity \T1/ptm/m/n/10 in [15] Underfull \hbox (badness 10000) in paragraph at lines 957--962 []\T1/pcr/b/n/10 IP_restrictions \T1/ptm/m/n/10 ^^U List of In-di-vid-u-al-Prop -erty key:value pairs that Underfull \hbox (badness 10000) in paragraph at lines 957--962 \T1/ptm/m/n/10 in-di-vid-u-als must have to re-ceive the di-ag-nos-tic in-ter-v en-tion. For Underfull \hbox (badness 10000) in paragraph at lines 957--962 \T1/ptm/m/n/10 ex-am-ple, \T1/pcr/m/n/10 [{"IndividualProperty1":"PropertyValue 1"}, Underfull \hbox (badness 10000) in paragraph at lines 964--969 []\T1/pcr/b/n/10 NP_restrictions \T1/ptm/m/n/10 ^^U List of Node-Prop-erty key: value pairs Underfull \hbox (badness 10000) in paragraph at lines 964--969 \T1/ptm/m/n/10 that nodes must have to re-ceive the di-ag-nos-tic in-ter-ven-ti on. Underfull \hbox (badness 10000) in paragraph at lines 964--969 \T1/ptm/m/n/10 For ex-am-ple, \T1/pcr/m/n/10 [{"NodeProperty1":"PropertyValue1" }, Underfull \hbox (badness 10000) in paragraph at lines 971--975 []\T1/pcr/b/n/10 disqualifying_properties \T1/ptm/m/n/10 ^^U List of In-di-vid- u-al-Prop-erty Underfull \hbox (badness 10000) in paragraph at lines 971--975 \T1/ptm/m/n/10 key:value pairs that cause an in-ter-ven-tion to be aborted. For ex- Underfull \hbox (badness 10000) in paragraph at lines 971--975 \T1/ptm/m/n/10 am-ple, \T1/pcr/m/n/10 [{"IndividualProperty1":"PropertyValue1"} , Underfull \hbox (badness 10000) in paragraph at lines 994--997 []\T1/pcr/b/n/10 expire_recent_drugs \T1/ptm/m/n/10 ^^U Adds \T1/pcr/m/n/10 [{" DrugStatus:None"}] \T1/ptm/m/n/10 to \T1/ptm/b/n/10 Prop- [16] Underfull \hbox (badness 10000) in paragraph at lines 1083--1083 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1083--1083 \T1/ptm/m/it/10 drug_code: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cam- Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 paign_type: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 MDA\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 6775) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_days: Overfull \hbox (19.21352pt too wide) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 tsteps_btwn_repetitions: Underfull \hbox (badness 7344) in paragraph at lines 1114--1114 [][]\T1/ptm/m/it/10 int[][] = 60\T1/ptm/m/n/10 , \T1/ptm/m/it/10 di-ag- Overfull \hbox (51.55446pt too wide) in paragraph at lines 1114--1114 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 BLOOD_SMEAR_PARASITES\TS1/ptm/m/it/10 '\T1/pt m/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 di-ag-nos- Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 = 40\T1/ptm/m/n/10 , \T1/ptm/m/it/10 mea-sure- Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 ment_sensitivity: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 [][]\T1/ptm/m/it/10 float[][] = 0.1\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 fmda_radius: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , Overfull \hbox (6.22408pt too wide) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 node_selection_type: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 DIS- Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 TANCE_ONLY\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 trig-ger_coverage: Underfull \hbox (badness 5667) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 balls: [][]int[][] = 0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 treat-ment_delay: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 trig- Overfull \hbox (17.97432pt too wide) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 gered_campaign_delay: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 tar-get_group: Overfull \hbox (33.88365pt too wide) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 drug_ineligibility_duration: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , Overfull \hbox (33.19351pt too wide) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Overfull \hbox (26.53346pt too wide) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 dis-qual-i-fy- Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 ing_properties: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 ger_condition_list: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 ten-ing_duration: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 ent_drug_configs: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 get_residents_only: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 [][]\T1/ptm/m/it/10 int[][] = 1\T1/ptm/m/n/10 , Overfull \hbox (35.68343pt too wide) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 check_eligibility_at_trigger: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 [][]\T1/ptm/m/it/10 bool[][] = Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 False\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-ceiv- Overfull \hbox (144.47322pt too wide) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 ing_drugs_event_name=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Received _Campaign_Drugs\TS1/ptm/m/it/10 '\T1/pcr/m/n/10 ) [17] [18] [19] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pcr.fd) Underfull \hbox (badness 10000) in paragraph at lines 1265--1268 []\T1/pcr/b/n/10 ind_property_restrictions \T1/ptm/m/n/10 ^^U The set-ting for \T1/ptm/b/n/10 Prop- Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_days: [][]list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age: [][]float[][] = Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 drug_configs: [][]list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-ceiv-ing_drugs_event: Overfull \hbox (57.71327pt too wide) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 emod_api.interventions.common.BroadcastEvent Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 rep-e-ti-tions: [][]int[ ][] = Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tsteps_btwn_repetitions: Underfull \hbox (badness 6348) in paragraph at lines 1310--1310 [][]\T1/ptm/m/it/10 int[][] = 60\T1/ptm/m/n/10 , \T1/ptm/m/it/10 node_ids: [][] list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ex-pire_recent_drugs: Overfull \hbox (86.50304pt too wide) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 emod_api.interventions.common.PropertyValueChanger Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 6032) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 dis-qual-i- fy- Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 ing_properties: [][]list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 trig-ger_condition_list: [][]list[][] = LaTeX Warning: Hyper reference `emodpy_malaria.interventions.drug_campaign:emod py_malaria.interventions.drug_campaign.add_drug_campaign' on page 20 undefined on input line 1312. [20] Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_days: [][]list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age: [][]float[][] = Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 \T1/ptm/m/it/10 1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 drug_configs: [][]list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-ceiv-ing_drugs_event: Overfull \hbox (63.71327pt too wide) in paragraph at lines 1325--1325 \T1/ptm/m/it/10 emod_api.interventions.common.BroadcastEvent Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 \T1/ptm/m/it/10 tsteps_btwn_repetitions: [][]int[][] Underfull \hbox (badness 7504) in paragraph at lines 1325--1325 \T1/ptm/m/it/10 = 60\T1/ptm/m/n/10 , \T1/ptm/m/it/10 treat-ment_delay: [][]int[ ][] Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 BLOOD_SMEAR_PARASITES\TS1/ptm/m/it/10 '\T1/pt m/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 \T1/ptm/m/it/10 40\T1/ptm/m/n/10 , \T1/ptm/m/it/10 mea-sure-ment_sensitivity: Underfull \hbox (badness 6063) in paragraph at lines 1325--1325 [][]\T1/ptm/m/it/10 float[][] = 0.1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 node_ids: [ ][]list[][] Overfull \hbox (92.50304pt too wide) in paragraph at lines 1325--1325 \T1/ptm/m/it/10 emod_api.interventions.common.PropertyValueChanger Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar-get_gro up: Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 \T1/ptm/m/it/10 any = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Ev-ery-one\TS1/ptm/m/it /10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 trig- Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 \T1/ptm/m/it/10 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 check_eligibility_at_trigger: LaTeX Warning: Hyper reference `emodpy_malaria.interventions.drug_campaign:emod py_malaria.interventions.drug_campaign.add_drug_campaign' on page 21 undefined on input line 1327. Underfull \hbox (badness 10000) in paragraph at lines 1326--1329 \T1/ptm/m/n/10 Add an MSAT (mass screen-ing and treat-ment) drug in-ter-ven-tio n to your cam-paign. See [21] Underfull \hbox (badness 10000) in paragraph at lines 1340--1340 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_days: [][]list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1340--1340 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 trig-ger_coverage: Underfull \hbox (badness 7221) in paragraph at lines 1340--1340 [][]\T1/ptm/m/it/10 float[][] = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age: [ ][]float[][] Underfull \hbox (badness 7595) in paragraph at lines 1340--1340 \T1/ptm/m/it/10 = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 drug_configs: [][]list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1340--1340 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-ceiv-ing_drugs_event: Overfull \hbox (63.71327pt too wide) in paragraph at lines 1340--1340 \T1/ptm/m/it/10 emod_api.interventions.common.BroadcastEvent Underfull \hbox (badness 10000) in paragraph at lines 1340--1340 \T1/ptm/m/it/10 tsteps_btwn_repetitions: [][]int[][] Underfull \hbox (badness 10000) in paragraph at lines 1340--1340 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 BLOOD_SMEAR_PARASITES\TS1/ptm/m/it/10 '\T1/pt m/m/n/10 , Overfull \hbox (92.50304pt too wide) in paragraph at lines 1340--1340 \T1/ptm/m/it/10 emod_api.interventions.common.PropertyValueChanger Underfull \hbox (badness 10000) in paragraph at lines 1340--1340 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1340--1340 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1340--1340 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1340--1340 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar-get_gro up: Underfull \hbox (badness 10000) in paragraph at lines 1340--1340 \T1/ptm/m/it/10 any = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Ev-ery-one\TS1/ptm/m/it /10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 trig- LaTeX Warning: Hyper reference `emodpy_malaria.interventions.drug_campaign:emod py_malaria.interventions.drug_campaign.add_drug_campaign' on page 22 undefined on input line 1342. Underfull \hbox (badness 7869) in paragraph at lines 1341--1344 \T1/ptm/m/n/10 Add an fMDA (fo-cal mass drug ad-min-is-tra-tion) drug in-ter-ve n-tion to your cam-paign. See Underfull \hbox (badness 10000) in paragraph at lines 1355--1355 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day: [][]int[][] = Underfull \hbox (badness 6141) in paragraph at lines 1355--1355 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age: [][]float[][] = 1 \T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1355--1355 \T1/ptm/m/it/10 re-ceiv-ing_drugs_event: Overfull \hbox (75.71327pt too wide) in paragraph at lines 1355--1355 \T1/ptm/m/it/10 emod_api.interventions.common.BroadcastEvent Overfull \hbox (9.55446pt too wide) in paragraph at lines 1355--1355 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 BLOOD_SMEAR_PARASITES\TS1/ptm/m/it/10 '\T1/pt m/m/n/10 , Overfull \hbox (104.50304pt too wide) in paragraph at lines 1355--1355 \T1/ptm/m/it/10 emod_api.interventions.common.PropertyValueChanger Underfull \hbox (badness 10000) in paragraph at lines 1355--1355 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1355--1355 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1355--1355 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1355--1355 \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1355--1355 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 dis-qual-i- fy- LaTeX Warning: Hyper reference `emodpy_malaria.interventions.drug_campaign:emod py_malaria.interventions.drug_campaign.add_drug_campaign' on page 22 undefined on input line 1357. [22] Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day: [][]int[][] = Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age: [][]float[][] = 1 \T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 \T1/ptm/m/it/10 re-ceiv-ing_drugs_event: Overfull \hbox (69.71327pt too wide) in paragraph at lines 1370--1370 \T1/ptm/m/it/10 emod_api.interventions.common.BroadcastEvent Underfull \hbox (badness 7613) in paragraph at lines 1370--1370 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lis-ten-ing_duration: Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 trig-ger_covera ge: Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 \T1/ptm/m/it/10 = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 node_selection_type: Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 DIS-TANCE_ONLY\ TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 \T1/ptm/m/it/10 node_ids: [][]list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 \T1/ptm/m/it/10 ex-pire_recent_drugs: Overfull \hbox (98.50304pt too wide) in paragraph at lines 1370--1370 \T1/ptm/m/it/10 emod_api.interventions.common.PropertyValueChanger Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 dis-qual-i- fy- LaTeX Warning: Hyper reference `emodpy_malaria.interventions.drug_campaign:emod py_malaria.interventions.drug_campaign.add_drug_campaign' on page 23 undefined on input line 1372. Underfull \hbox (badness 10000) in paragraph at lines 1385--1385 \T1/ptm/m/it/10 TANCE_ONLY\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ev ent_trigger: [23] Underfull \hbox (badness 5091) in paragraph at lines 1444--1444 [][]\T1/ptm/m/it/10 int[][] = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 node_ids: [][]l ist[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1477--1477 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1477--1477 \T1/ptm/m/it/10 monthly_eir: Underfull \hbox (badness 10000) in paragraph at lines 1477--1477 [][]\T1/ptm/m/it/10 list[][]\T1/ptm/m/n/10 , \T1/ptm/m/it/10 file-name: [24] Underfull \hbox (badness 5274) in paragraph at lines 1509--1509 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er- Underfull \hbox (badness 10000) in paragraph at lines 1509--1509 \T1/ptm/m/it/10 killing_eff=1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in- Underfull \hbox (badness 10000) in paragraph at lines 1509--1509 \T1/ptm/m/it/10 sec-ti-cide=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1530--1530 []\T1/ptm/m/it/10 schema_path_container\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1530--1530 [][]\T1/ptm/m/it/10 float[][] = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-mo- Underfull \hbox (badness 10000) in paragraph at lines 1530--1530 \T1/ptm/m/it/10 killing_exponential_decay_rate: [25] Underfull \hbox (badness 10000) in paragraph at lines 1573--1573 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1573--1573 \T1/ptm/m/it/10 re-leased_number: Underfull \hbox (badness 5954) in paragraph at lines 1573--1573 [][]\T1/ptm/m/it/10 int[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 1573--1573 \T1/ptm/m/it/10 leased_fraction: Underfull \hbox (badness 10000) in paragraph at lines 1573--1573 \T1/ptm/m/it/10 leased_infectious: Underfull \hbox (badness 10000) in paragraph at lines 1573--1573 [][]\T1/ptm/m/it/10 float[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 1573--1573 \T1/ptm/m/it/10 leased_species: Underfull \hbox (badness 10000) in paragraph at lines 1573--1573 \T1/ptm/m/it/10 re-leased_genome: Underfull \hbox (badness 10000) in paragraph at lines 1573--1573 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1593--1595 []\T1/pcr/b/n/10 released_infectious \T1/ptm/m/n/10 ^^U The frac-tion of vec-to rs re-leased that Underfull \hbox (badness 10000) in paragraph at lines 1593--1595 \T1/ptm/m/n/10 are to be in-fec-tious. One can only use this fea-ture when Overfull \hbox (16.27205pt too wide) in paragraph at lines 1593--1595 \T1/ptm/m/n/10 `Malaria_Model'!='MALARIA_MECHANISTIC_MODEL_WITH_PARASITE_GENETI CS' Underfull \hbox (badness 10000) in paragraph at lines 1619--1619 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Overfull \hbox (16.35448pt too wide) in paragraph at lines 1619--1619 \T1/ptm/m/it/10 start_day: Underfull \hbox (badness 10000) in paragraph at lines 1619--1619 [][]\T1/ptm/m/it/10 int[][] Underfull \hbox (badness 10000) in paragraph at lines 1619--1619 \T1/ptm/m/it/10 = 1\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1619--1619 \T1/ptm/m/it/10 file- Overfull \hbox (2.35487pt too wide) in paragraph at lines 1619--1619 \T1/ptm/m/it/10 None\T1/pcr/m/n/10 ) [26] Overfull \hbox (235.6943pt too wide) in paragraph at lines 1645--1645 []\T1/ptm/m/it/10 schema_path_container\T1/ptm/m/n/10 , Overfull \hbox (178.35448pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 start_day: Overfull \hbox (147.8048pt too wide) in paragraph at lines 1645--1645 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (143.99501pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 = Overfull \hbox (144.74501pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 1\T1/ptm/m/n/10 , Overfull \hbox (150.01491pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 de- Overfull \hbox (152.79494pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 mo- Overfull \hbox (212.73457pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 graphic_coverage: Overfull \hbox (155.0249pt too wide) in paragraph at lines 1645--1645 [][]\T1/ptm/m/it/10 float[][] Overfull \hbox (143.99501pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 = Overfull \hbox (152.24501pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 1.0\T1/ptm/m/n/10 , Overfull \hbox (152.0448pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 tar- Overfull \hbox (224.36418pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 get_num_individuals: Overfull \hbox (147.8048pt too wide) in paragraph at lines 1645--1645 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (143.99501pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 = Overfull \hbox (160.85487pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (152.97473pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 cre- Overfull \hbox (264.54375pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 ate_nucleotide_sequence_from: Overfull \hbox (147.80469pt too wide) in paragraph at lines 1645--1645 [][]\T1/ptm/m/it/10 str[][] Overfull \hbox (143.99501pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 = Overfull \hbox (160.79482pt too wide) in paragraph at lines 1645--1645 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 BAR- Overfull \hbox (207.99452pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 CODE_STRING\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (154.26491pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 bar- Overfull \hbox (187.79442pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 code_string: Overfull \hbox (147.80469pt too wide) in paragraph at lines 1645--1645 [][]\T1/ptm/m/it/10 str[][] Overfull \hbox (143.99501pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 = Overfull \hbox (160.85487pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (226.88371pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 drug_resistant_string: Overfull \hbox (147.80469pt too wide) in paragraph at lines 1645--1645 [][]\T1/ptm/m/it/10 str[][] Overfull \hbox (143.99501pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 = Overfull \hbox (160.85487pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (217.23422pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 msp_variant_value: Overfull \hbox (147.8048pt too wide) in paragraph at lines 1645--1645 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (143.99501pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 = Overfull \hbox (160.85487pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (238.34395pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 pfemp1_variants_values: Overfull \hbox (149.47458pt too wide) in paragraph at lines 1645--1645 [][]\T1/ptm/m/it/10 list[][] Overfull \hbox (143.99501pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 = Overfull \hbox (160.85487pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (154.26491pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 bar- Overfull \hbox (329.51305pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 code_allele_frequencies_per_genome_location: Overfull \hbox (149.47458pt too wide) in paragraph at lines 1645--1645 [][]\T1/ptm/m/it/10 list[][] Overfull \hbox (143.99501pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 = Overfull \hbox (160.85487pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (368.60234pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 drug_resistant_allele_frequencies_per_genome_location: Overfull \hbox (149.47458pt too wide) in paragraph at lines 1645--1645 [][]\T1/ptm/m/it/10 list[][] Overfull \hbox (143.99501pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 = Overfull \hbox (164.35487pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 None\T1/pcr/m/n/10 ) [27] [28] Underfull \hbox (badness 10000) in paragraph at lines 1694--1698 []\T1/pcr/b/n/10 drug_resistant_allele_frequencies_per_genome_location \T1/ptm/ m/n/10 ^^U ^^PThe [29] Overfull \hbox (235.6943pt too wide) in paragraph at lines 1722--1722 []\T1/ptm/m/it/10 schema_path_container\T1/ptm/m/n/10 , Overfull \hbox (178.35448pt too wide) in paragraph at lines 1722--1722 \T1/ptm/m/it/10 start_day: Overfull \hbox (147.8048pt too wide) in paragraph at lines 1722--1722 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (143.99501pt too wide) in paragraph at lines 1722--1722 \T1/ptm/m/it/10 = Overfull \hbox (144.74501pt too wide) in paragraph at lines 1722--1722 \T1/ptm/m/it/10 1\T1/ptm/m/n/10 , Overfull \hbox (150.01491pt too wide) in paragraph at lines 1722--1722 \T1/ptm/m/it/10 de- Overfull \hbox (152.79494pt too wide) in paragraph at lines 1722--1722 \T1/ptm/m/it/10 mo- Overfull \hbox (212.73457pt too wide) in paragraph at lines 1722--1722 \T1/ptm/m/it/10 graphic_coverage: Overfull \hbox (155.0249pt too wide) in paragraph at lines 1722--1722 [][]\T1/ptm/m/it/10 float[][] Overfull \hbox (143.99501pt too wide) in paragraph at lines 1722--1722 \T1/ptm/m/it/10 = Overfull \hbox (152.24501pt too wide) in paragraph at lines 1722--1722 \T1/ptm/m/it/10 1.0\T1/ptm/m/n/10 , Overfull \hbox (152.0448pt too wide) in paragraph at lines 1722--1722 \T1/ptm/m/it/10 tar- Overfull \hbox (224.36418pt too wide) in paragraph at lines 1722--1722 \T1/ptm/m/it/10 get_num_individuals: Overfull \hbox (147.8048pt too wide) in paragraph at lines 1722--1722 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (143.99501pt too wide) in paragraph at lines 1722--1722 \T1/ptm/m/it/10 = Overfull \hbox (160.85487pt too wide) in paragraph at lines 1722--1722 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (178.34447pt too wide) in paragraph at lines 1722--1722 \T1/ptm/m/it/10 irbc_type: Overfull \hbox (149.47458pt too wide) in paragraph at lines 1722--1722 [][]\T1/ptm/m/it/10 list[][] Overfull \hbox (143.99501pt too wide) in paragraph at lines 1722--1722 \T1/ptm/m/it/10 = Overfull \hbox (160.85487pt too wide) in paragraph at lines 1722--1722 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (150.57483pt too wide) in paragraph at lines 1722--1722 \T1/ptm/m/it/10 mi- Overfull \hbox (210.5643pt too wide) in paragraph at lines 1722--1722 \T1/ptm/m/it/10 nor_epitope_type: Overfull \hbox (149.47458pt too wide) in paragraph at lines 1722--1722 [][]\T1/ptm/m/it/10 list[][] Overfull \hbox (143.99501pt too wide) in paragraph at lines 1722--1722 \T1/ptm/m/it/10 = Overfull \hbox (160.85487pt too wide) in paragraph at lines 1722--1722 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (178.3446pt too wide) in paragraph at lines 1722--1722 \T1/ptm/m/it/10 msp_type: Overfull \hbox (147.8048pt too wide) in paragraph at lines 1722--1722 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (143.99501pt too wide) in paragraph at lines 1722--1722 \T1/ptm/m/it/10 = Overfull \hbox (164.35487pt too wide) in paragraph at lines 1722--1722 \T1/ptm/m/it/10 None\T1/pcr/m/n/10 ) [30] Overfull \hbox (19.6943pt too wide) in paragraph at lines 1770--1770 []\T1/ptm/m/it/10 schema_path_container\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1770--1770 \T1/ptm/m/it/10 killing_effect\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1770--1770 \T1/ptm/m/it/10 in-sec-ti- Underfull \hbox (badness 10000) in paragraph at lines 1770--1770 \T1/ptm/m/it/10 cide_name=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1770--1770 \T1/ptm/m/it/10 start_day=1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar- Underfull \hbox (badness 10000) in paragraph at lines 1770--1770 \T1/ptm/m/it/10 get_coverage=1.0\T1/ptm/m/n/10 , Overfull \hbox (41.63394pt too wide) in paragraph at lines 1770--1770 \T1/ptm/m/it/10 killing_predecay_duration=0\T1/ptm/m/n/10 , Overfull \hbox (10.33417pt too wide) in paragraph at lines 1770--1770 \T1/ptm/m/it/10 killing_decay_rate=0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1809--1809 \T1/ptm/m/it/10 = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 spray_coverage: Overfull \hbox (5.18481pt too wide) in paragraph at lines 1834--1834 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , Overfull \hbox (4.35448pt too wide) in paragraph at lines 1834--1834 \T1/ptm/m/it/10 start_day: Underfull \hbox (badness 10000) in paragraph at lines 1834--1834 \T1/ptm/m/it/10 file- Underfull \hbox (badness 10000) in paragraph at lines 1834--1834 \T1/ptm/m/it/10 name: Underfull \hbox (badness 10000) in paragraph at lines 1834--1834 [][]\T1/ptm/m/it/10 str[][] = [31] Underfull \hbox (badness 6893) in paragraph at lines 1851--1851 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day: [][]int[] [] = 0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1851--1851 \T1/ptm/m/it/10 spray_coverage: [][]float[][] = 1.0\T1/ptm/m/n/10 , Underfull \hbox (badness 7099) in paragraph at lines 1851--1851 \T1/ptm/m/it/10 ex-pi-ra-tion_constant: [][]int[][] = 100\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1898--1898 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , [32] Underfull \hbox (badness 10000) in paragraph at lines 1934--1938 []\T1/pcr/b/n/10 of individuals to target with the intervention. Default is Underfull \hbox (badness 10000) in paragraph at lines 1934--1938 \T1/ptm/m/n/10 (\T1/pcr/m/sl/10 properties\T1/ptm/m/n/10 ) ^^U \T1/pcr/m/n/10 [ { "trigger":"NewClinicalCase","coverage":0. Underfull \hbox (badness 10000) in paragraph at lines 1934--1938 \T1/pcr/m/n/10 8,"agemin":15,"agemax":70, "seek":0.4,"rate":0.3}, Underfull \hbox (badness 10000) in paragraph at lines 1934--1938 \T1/pcr/m/n/10 {"trigger":"NewSevereCase","coverage":0.8,"seek":0.6, Underfull \hbox (badness 10000) in paragraph at lines 1952--1954 []\T1/pcr/b/n/10 must have to receive the intervention. For example, Underfull \hbox (badness 10000) in paragraph at lines 1952--1954 \T1/ptm/m/n/10 (\T1/pcr/m/sl/10 individuals\T1/ptm/m/n/10 ) ^^U \T1/pcr/m/n/10 [{"IndividualProperty1":"PropertyValue1"}, Underfull \hbox (badness 10000) in paragraph at lines 1982--1982 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day: [][]int[][] = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 dis- Underfull \hbox (badness 10000) in paragraph at lines 1982--1982 \T1/ptm/m/it/10 0.0013698630136986301\T1/ptm/m/n/10 , \T1/ptm/m/it/10 killing_e ff: Underfull \hbox (badness 10000) in paragraph at lines 1982--1982 \T1/ptm/m/it/10 0.0006849315068493151\T1/ptm/m/n/10 , \T1/ptm/m/it/10 iv_name: Underfull \hbox (badness 10000) in paragraph at lines 1982--1982 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Us-ageDe-pen-de ntBed-net\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1982--1982 \T1/ptm/m/it/10 sonal_dependence: [][]dict[][] = None\T1/ptm/m/n/10 , [33] [34] [35] Underfull \hbox (badness 10000) in paragraph at lines 2180--2180 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2180--2180 \T1/ptm/m/it/10 start_day\T1/ptm/m/n/10 , \T1/ptm/m/it/10 file- Underfull \hbox (badness 10000) in paragraph at lines 2195--2195 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2195--2195 \T1/ptm/m/it/10 start_day: [][]int[][] = Underfull \hbox (badness 10000) in paragraph at lines 2195--2195 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 du-ra-tion_days: Underfull \hbox (badness 10000) in paragraph at lines 2195--2195 [][]\T1/ptm/m/it/10 int[][] = 365000\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2195--2195 \T1/ptm/m/it/10 clude_vector_state: Underfull \hbox (badness 10000) in paragraph at lines 2195--2195 [][]\T1/ptm/m/it/10 int[][] = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 strat- Underfull \hbox (badness 10000) in paragraph at lines 2195--2195 \T1/ptm/m/it/10 ify_by: [][]str[][] = Underfull \hbox (badness 10000) in paragraph at lines 2195--2195 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 GENOME\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ ptm/m/it/10 com- Overfull \hbox (9.02399pt too wide) in paragraph at lines 2195--2195 \T1/ptm/m/it/10 bine_similar_genomes: Underfull \hbox (badness 10000) in paragraph at lines 2195--2195 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 spe- Overfull \hbox (102.76315pt too wide) in paragraph at lines 2195--2195 \T1/ptm/m/it/10 cific_genome_combinations_for_stratification: Underfull \hbox (badness 10000) in paragraph at lines 2195--2195 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 al- Overfull \hbox (64.54318pt too wide) in paragraph at lines 2195--2195 \T1/ptm/m/it/10 lele_combinations_for_stratification: Overfull \hbox (2.32376pt too wide) in paragraph at lines 2195--2195 \T1/ptm/m/it/10 les_for_stratification: Underfull \hbox (badness 10000) in paragraph at lines 2195--2195 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- [36] [37] Underfull \hbox (badness 10000) in paragraph at lines 2275--2275 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2294--2294 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 6893) in paragraph at lines 2294--2294 \T1/ptm/m/it/10 = 365000\T1/ptm/m/n/10 , \T1/ptm/m/it/10 nodes: Underfull \hbox (badness 10000) in paragraph at lines 2294--2294 \T1/ptm/m/it/10 ual_property_filter: Underfull \hbox (badness 10000) in paragraph at lines 2294--2294 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , \T1/ptm/m/it/ 10 in-fec- Underfull \hbox (badness 10000) in paragraph at lines 2294--2294 \T1/ptm/m/it/10 tious-ness_bins: Underfull \hbox (badness 10000) in paragraph at lines 2294--2294 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Overfull \hbox (4.30418pt too wide) in paragraph at lines 2294--2294 \T1/ptm/m/it/10 max_number_reports: Underfull \hbox (badness 7291) in paragraph at lines 2294--2294 [][]\T1/ptm/m/it/10 int[][] = 100\T1/ptm/m/n/10 , \T1/ptm/m/it/10 par-a- Underfull \hbox (badness 10000) in paragraph at lines 2294--2294 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- [38] Underfull \hbox (badness 10000) in paragraph at lines 2355--2355 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i- Underfull \hbox (badness 10000) in paragraph at lines 2371--2371 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2371--2371 \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2371--2371 \T1/ptm/m/it/10 start_day: Underfull \hbox (badness 10000) in paragraph at lines 2371--2371 \T1/ptm/m/it/10 ra-tion_days: Underfull \hbox (badness 10000) in paragraph at lines 2371--2371 \T1/ptm/m/it/10 nodes: Overfull \hbox (3.20416pt too wide) in paragraph at lines 2371--2371 \T1/ptm/m/it/10 pretty_format: Overfull \hbox (15.2441pt too wide) in paragraph at lines 2371--2371 \T1/ptm/m/it/10 port_description: [39] Underfull \hbox (badness 10000) in paragraph at lines 2411--2411 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2411--2411 \T1/ptm/m/it/10 man- Underfull \hbox (badness 10000) in paragraph at lines 2411--2411 \T1/ptm/m/it/10 i-fest\T1/ptm/m/n/10 , Overfull \hbox (10.35448pt too wide) in paragraph at lines 2411--2411 \T1/ptm/m/it/10 start_day: Overfull \hbox (6.45485pt too wide) in paragraph at lines 2411--2411 \T1/ptm/m/it/10 end_day: Underfull \hbox (badness 10000) in paragraph at lines 2411--2411 [][]\T1/ptm/m/it/10 int[][] = Overfull \hbox (1.74501pt too wide) in paragraph at lines 2411--2411 \T1/ptm/m/it/10 365000\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2411--2411 \T1/ptm/m/it/10 re-port- Overfull \hbox (21.46431pt too wide) in paragraph at lines 2411--2411 \T1/ptm/m/it/10 ing_interval: Underfull \hbox (badness 10000) in paragraph at lines 2411--2411 [][]\T1/ptm/m/it/10 int[][] = Overfull \hbox (1.74501pt too wide) in paragraph at lines 2411--2411 \T1/ptm/m/it/10 365000\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2411--2411 \T1/ptm/m/it/10 nodes: Underfull \hbox (badness 10000) in paragraph at lines 2411--2411 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2411--2411 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2411--2411 \T1/ptm/m/it/10 re- Overfull \hbox (28.1245pt too wide) in paragraph at lines 2411--2411 \T1/ptm/m/it/10 port_filename: Underfull \hbox (badness 10000) in paragraph at lines 2411--2411 [][]\T1/ptm/m/it/10 str[][] = Underfull \hbox (badness 10000) in paragraph at lines 2411--2411 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Spa- Underfull \hbox (badness 10000) in paragraph at lines 2411--2411 \T1/ptm/m/it/10 tial-Re- Underfull \hbox (badness 10000) in paragraph at lines 2411--2411 \T1/ptm/m/it/10 port- Underfull \hbox (badness 10000) in paragraph at lines 2411--2411 \T1/ptm/m/it/10 Malar- Underfull \hbox (badness 10000) in paragraph at lines 2411--2411 \T1/ptm/m/it/10 i-aFil- Overfull \hbox (13.23434pt too wide) in paragraph at lines 2411--2411 \T1/ptm/m/it/10 tered.json\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2411--2411 \T1/ptm/m/it/10 spa- Overfull \hbox (56.87419pt too wide) in paragraph at lines 2411--2411 \T1/ptm/m/it/10 tial_output_channels: Underfull \hbox (badness 10000) in paragraph at lines 2411--2411 [][]\T1/ptm/m/it/10 list[][] = [40] Underfull \hbox (badness 10000) in paragraph at lines 2439--2447 \T1/ptm/m/n/10 ^^PBlood_Smear_Gametocyte_Prevalence^^Q, ^^PBlood_Smear_Parasite _Prevalence^^Q, Underfull \hbox (badness 10000) in paragraph at lines 2439--2447 \T1/ptm/m/n/10 ^^PCam-paign_Cost^^Q, ^^PDaily_Bites_Per_Human^^Q, ^^PDaily_EIR^ ^Q, ^^PDis-ease_Deaths^^Q, Underfull \hbox (badness 10000) in paragraph at lines 2439--2447 \T1/ptm/m/n/10 ^^PNew_Reported_Infections^^Q, ^^PNew_Severe_Cases^^Q, ^^PPCR_Ga metocyte_Prevalence^^Q, Underfull \hbox (badness 10000) in paragraph at lines 2439--2447 \T1/ptm/m/n/10 ^^PPCR_Parasite_Prevalence^^Q, ^^PPfHRP2_Prevalence^^Q, ^^PPop-u -la-tion^^Q, ^^PPreva- Underfull \hbox (badness 10000) in paragraph at lines 2439--2447 \T1/ptm/m/n/10 lence^^Q, ^^PRain-fall^^Q, ^^PRel-a-tive_Humidity^^Q, ^^PTrue_Pr evalence^^Q De-faults: Underfull \hbox (badness 10000) in paragraph at lines 2460--2460 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2460--2460 \T1/ptm/m/it/10 start_day: [][]int[][] = Underfull \hbox (badness 10000) in paragraph at lines 2460--2460 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 du-ra-tion_days: Underfull \hbox (badness 10000) in paragraph at lines 2460--2460 [][]\T1/ptm/m/it/10 int[][] = 365000\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2460--2460 \T1/ptm/m/it/10 event_trigger_list: Underfull \hbox (badness 6893) in paragraph at lines 2460--2460 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 nodes: Underfull \hbox (badness 10000) in paragraph at lines 2460--2460 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 2460--2460 \T1/ptm/m/it/10 port_description: Underfull \hbox (badness 10000) in paragraph at lines 2481--2481 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 end_day: Underfull \hbox (badness 10000) in paragraph at lines 2481--2481 [][]\T1/ptm/m/it/10 int[][] = 365000\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in- Underfull \hbox (badness 10000) in paragraph at lines 2481--2481 \T1/ptm/m/it/10 clude_infection_table: Underfull \hbox (badness 10000) in paragraph at lines 2481--2481 [][]\T1/ptm/m/it/10 int[][] = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in- [41] Underfull \hbox (badness 10000) in paragraph at lines 2543--2543 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 7168) in paragraph at lines 2543--2543 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 du-ra-tion_days: Underfull \hbox (badness 10000) in paragraph at lines 2543--2543 [][]\T1/ptm/m/it/10 int[][] = 365000\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2543--2543 \T1/ptm/m/it/10 re-port-ing_interval: Underfull \hbox (badness 10000) in paragraph at lines 2543--2543 [][]\T1/ptm/m/it/10 int[][] = 365000\T1/ptm/m/n/10 , Overfull \hbox (10.30418pt too wide) in paragraph at lines 2543--2543 \T1/ptm/m/it/10 max_number_reports: Underfull \hbox (badness 10000) in paragraph at lines 2543--2543 [][]\T1/ptm/m/it/10 int[][] = 365000\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2543--2543 \T1/ptm/m/it/10 nodes: [][]list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2543--2543 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 age_bins: Underfull \hbox (badness 10000) in paragraph at lines 2543--2543 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2543--2543 \T1/ptm/m/it/10 pretty_format: Underfull \hbox (badness 10000) in paragraph at lines 2543--2543 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 2543--2543 \T1/ptm/m/it/10 port_description: [42] Underfull \hbox (badness 10000) in paragraph at lines 2593--2593 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 7168) in paragraph at lines 2593--2593 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 du-ra-tion_days: Underfull \hbox (badness 10000) in paragraph at lines 2593--2593 [][]\T1/ptm/m/it/10 int[][] = 365000\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2593--2593 \T1/ptm/m/it/10 event_trigger_list: Underfull \hbox (badness 10000) in paragraph at lines 2593--2593 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Overfull \hbox (10.30418pt too wide) in paragraph at lines 2593--2593 \T1/ptm/m/it/10 max_number_reports: Underfull \hbox (badness 10000) in paragraph at lines 2593--2593 [][]\T1/ptm/m/it/10 int[][] = 365000\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2593--2593 \T1/ptm/m/it/10 nodes: [][]list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2593--2593 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in-di-vid- Overfull \hbox (20.78384pt too wide) in paragraph at lines 2593--2593 \T1/ptm/m/it/10 ual_property_to_collect: Underfull \hbox (badness 10000) in paragraph at lines 2593--2593 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2593--2593 \T1/ptm/m/it/10 pretty_format: Underfull \hbox (badness 10000) in paragraph at lines 2593--2593 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 2593--2593 \T1/ptm/m/it/10 port_description: [43] Underfull \hbox (badness 10000) in paragraph at lines 2694--2694 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2694--2694 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in-di-vid- Overfull \hbox (26.78384pt too wide) in paragraph at lines 2694--2694 \T1/ptm/m/it/10 ual_property_to_collect: Underfull \hbox (badness 6526) in paragraph at lines 2694--2694 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , \T1/ptm/m/it/ 10 strat- Underfull \hbox (badness 10000) in paragraph at lines 2694--2694 \T1/ptm/m/it/10 ify_by_gender: Overfull \hbox (47.85474pt too wide) in paragraph at lines 2728--2728 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , Overfull \hbox (49.79494pt too wide) in paragraph at lines 2728--2728 \T1/ptm/m/it/10 man- Overfull \hbox (35.35486pt too wide) in paragraph at lines 2728--2728 \T1/ptm/m/it/10 i- Overfull \hbox (45.63463pt too wide) in paragraph at lines 2728--2728 \T1/ptm/m/it/10 fest\T1/ptm/m/n/10 , Overfull \hbox (46.26491pt too wide) in paragraph at lines 2728--2728 \T1/ptm/m/it/10 bar- Overfull \hbox (55.34474pt too wide) in paragraph at lines 2728--2728 \T1/ptm/m/it/10 codes: Overfull \hbox (41.47458pt too wide) in paragraph at lines 2728--2728 [][]\T1/ptm/m/it/10 list[][] Overfull \hbox (35.99501pt too wide) in paragraph at lines 2728--2728 \T1/ptm/m/it/10 = Overfull \hbox (52.85487pt too wide) in paragraph at lines 2728--2728 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (122.7736pt too wide) in paragraph at lines 2728--2728 \T1/ptm/m/it/10 drug_resistant_strings: Overfull \hbox (41.47458pt too wide) in paragraph at lines 2728--2728 [][]\T1/ptm/m/it/10 list[][] Overfull \hbox (35.99501pt too wide) in paragraph at lines 2728--2728 \T1/ptm/m/it/10 = Overfull \hbox (52.85487pt too wide) in paragraph at lines 2728--2728 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (131.6536pt too wide) in paragraph at lines 2728--2728 \T1/ptm/m/it/10 drug_resistant_stat_type: Overfull \hbox (39.80469pt too wide) in paragraph at lines 2728--2728 [][]\T1/ptm/m/it/10 str[][] Overfull \hbox (35.99501pt too wide) in paragraph at lines 2728--2728 \T1/ptm/m/it/10 = Overfull \hbox (240.52356pt too wide) in paragraph at lines 2728--2728 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 NUM_PEOPLE_WITH_RESISTANT_INFECTION\TS1/ptm/m /it/10 '\T1/ptm/m/n/10 , Overfull \hbox (68.48471pt too wide) in paragraph at lines 2728--2728 \T1/ptm/m/it/10 age_bins: Overfull \hbox (41.47458pt too wide) in paragraph at lines 2728--2728 [][]\T1/ptm/m/it/10 list[][] Overfull \hbox (35.99501pt too wide) in paragraph at lines 2728--2728 \T1/ptm/m/it/10 = Overfull \hbox (52.85487pt too wide) in paragraph at lines 2728--2728 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (40.35486pt too wide) in paragraph at lines 2728--2728 \T1/ptm/m/it/10 in- Overfull \hbox (40.35486pt too wide) in paragraph at lines 2728--2728 \T1/ptm/m/it/10 di- Overfull \hbox (44.7948pt too wide) in paragraph at lines 2728--2728 \T1/ptm/m/it/10 vid- Overfull \hbox (128.78384pt too wide) in paragraph at lines 2728--2728 \T1/ptm/m/it/10 ual_property_to_collect: Overfull \hbox (39.80469pt too wide) in paragraph at lines 2728--2728 [][]\T1/ptm/m/it/10 str[][] Overfull \hbox (35.99501pt too wide) in paragraph at lines 2728--2728 \T1/ptm/m/it/10 = Overfull \hbox (36.0248pt too wide) in paragraph at lines 2728--2728 \TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , Overfull \hbox (50.76463pt too wide) in paragraph at lines 2728--2728 \T1/ptm/m/it/10 strat- Overfull \hbox (89.68442pt too wide) in paragraph at lines 2728--2728 \T1/ptm/m/it/10 ify_by_gender: Overfull \hbox (39.8048pt too wide) in paragraph at lines 2728--2728 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (35.99501pt too wide) in paragraph at lines 2728--2728 \T1/ptm/m/it/10 = Overfull \hbox (40.24501pt too wide) in paragraph at lines 2728--2728 \T1/ptm/m/it/10 1\T1/pcr/m/n/10 ) [44] [45] Underfull \hbox (badness 10000) in paragraph at lines 2779--2779 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Overfull \hbox (17.85474pt too wide) in paragraph at lines 2808--2808 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , Overfull \hbox (19.79494pt too wide) in paragraph at lines 2808--2808 \T1/ptm/m/it/10 man- Overfull \hbox (5.35486pt too wide) in paragraph at lines 2808--2808 \T1/ptm/m/it/10 i- Overfull \hbox (15.63463pt too wide) in paragraph at lines 2808--2808 \T1/ptm/m/it/10 fest\T1/ptm/m/n/10 , Overfull \hbox (48.68404pt too wide) in paragraph at lines 2808--2808 \T1/ptm/m/it/10 species_list: Overfull \hbox (11.47458pt too wide) in paragraph at lines 2808--2808 [][]\T1/ptm/m/it/10 list[][] Overfull \hbox (5.99501pt too wide) in paragraph at lines 2808--2808 \T1/ptm/m/it/10 = Overfull \hbox (22.85487pt too wide) in paragraph at lines 2808--2808 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (20.76463pt too wide) in paragraph at lines 2808--2808 \T1/ptm/m/it/10 strat- Overfull \hbox (60.89413pt too wide) in paragraph at lines 2808--2808 \T1/ptm/m/it/10 ify_by_species: Overfull \hbox (9.8048pt too wide) in paragraph at lines 2808--2808 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (5.99501pt too wide) in paragraph at lines 2808--2808 \T1/ptm/m/it/10 = Overfull \hbox (6.74501pt too wide) in paragraph at lines 2808--2808 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , Overfull \hbox (10.35486pt too wide) in paragraph at lines 2808--2808 \T1/ptm/m/it/10 in- Overfull \hbox (70.75449pt too wide) in paragraph at lines 2808--2808 \T1/ptm/m/it/10 clude_wolbachia: Overfull \hbox (9.8048pt too wide) in paragraph at lines 2808--2808 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (5.99501pt too wide) in paragraph at lines 2808--2808 \T1/ptm/m/it/10 = Overfull \hbox (6.74501pt too wide) in paragraph at lines 2808--2808 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , Overfull \hbox (10.35486pt too wide) in paragraph at lines 2808--2808 \T1/ptm/m/it/10 in- Overfull \hbox (65.80426pt too wide) in paragraph at lines 2808--2808 \T1/ptm/m/it/10 clude_gestation: Overfull \hbox (9.8048pt too wide) in paragraph at lines 2808--2808 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (5.99501pt too wide) in paragraph at lines 2808--2808 \T1/ptm/m/it/10 = Overfull \hbox (6.74501pt too wide) in paragraph at lines 2808--2808 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , Overfull \hbox (16.26491pt too wide) in paragraph at lines 2808--2808 \T1/ptm/m/it/10 bar- Overfull \hbox (25.34474pt too wide) in paragraph at lines 2808--2808 \T1/ptm/m/it/10 codes: Overfull \hbox (11.47458pt too wide) in paragraph at lines 2808--2808 [][]\T1/ptm/m/it/10 list[][] Overfull \hbox (5.99501pt too wide) in paragraph at lines 2808--2808 \T1/ptm/m/it/10 = Overfull \hbox (26.35487pt too wide) in paragraph at lines 2808--2808 \T1/ptm/m/it/10 None\T1/pcr/m/n/10 ) [46] Underfull \hbox (badness 10000) in paragraph at lines 2848--2848 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pa-ram-e-ters: Underfull \hbox (badness 10000) in paragraph at lines 2848--2848 \T1/ptm/m/it/10 dict = \T1/ptm/m/n/10 , Underfull \hbox (badness 6348) in paragraph at lines 2848--2848 \T1/ptm/m/it/10 En-abled: bool = Underfull \hbox (badness 10000) in paragraph at lines 2896--2896 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pa-ram-e-ters: Underfull \hbox (badness 10000) in paragraph at lines 2896--2896 \T1/ptm/m/it/10 dict = \T1/ptm/m/n/10 , Underfull \hbox (badness 6348) in paragraph at lines 2896--2896 \T1/ptm/m/it/10 En-abled: bool = [47] Underfull \hbox (badness 10000) in paragraph at lines 2920--2920 []\T1/ptm/m/it/10 class_name: Underfull \hbox (badness 10000) in paragraph at lines 2920--2920 \T1/ptm/m/it/10 = \T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2920--2920 \T1/ptm/m/it/10 En-abled: Overfull \hbox (0.5943pt too wide) in paragraph at lines 2920--2920 \T1/ptm/m/it/10 Pretty_Format: Overfull \hbox (55.2345pt too wide) in paragraph at lines 2945--2945 []\T1/ptm/m/it/10 class_name: Overfull \hbox (15.80469pt too wide) in paragraph at lines 2945--2945 \T1/ptm/m/it/10 str Overfull \hbox (11.99501pt too wide) in paragraph at lines 2945--2945 \T1/ptm/m/it/10 = Overfull \hbox (28.85487pt too wide) in paragraph at lines 2945--2945 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (18.57497pt too wide) in paragraph at lines 2945--2945 \T1/ptm/m/it/10 pa- Overfull \hbox (24.53493pt too wide) in paragraph at lines 2945--2945 \T1/ptm/m/it/10 ram- Overfull \hbox (13.01491pt too wide) in paragraph at lines 2945--2945 \T1/ptm/m/it/10 e- Overfull \hbox (23.4746pt too wide) in paragraph at lines 2945--2945 \T1/ptm/m/it/10 ters: Overfull \hbox (20.24474pt too wide) in paragraph at lines 2945--2945 \T1/ptm/m/it/10 dict Overfull \hbox (11.99501pt too wide) in paragraph at lines 2945--2945 \T1/ptm/m/it/10 = Overfull \hbox (27.5448pt too wide) in paragraph at lines 2945--2945 \T1/ptm/m/it/10 \T1/ptm/m/n/10 , Overfull \hbox (19.68495pt too wide) in paragraph at lines 2945--2945 \T1/ptm/m/it/10 En- Overfull \hbox (30.7948pt too wide) in paragraph at lines 2945--2945 \T1/ptm/m/it/10 abled: Overfull \hbox (23.0249pt too wide) in paragraph at lines 2945--2945 \T1/ptm/m/it/10 bool Overfull \hbox (11.99501pt too wide) in paragraph at lines 2945--2945 \T1/ptm/m/it/10 = Overfull \hbox (26.08485pt too wide) in paragraph at lines 2945--2945 \T1/ptm/m/it/10 True\T1/ptm/m/n/10 , Overfull \hbox (66.5943pt too wide) in paragraph at lines 2945--2945 \T1/ptm/m/it/10 Pretty_Format: Overfull \hbox (23.0249pt too wide) in paragraph at lines 2945--2945 \T1/ptm/m/it/10 bool Overfull \hbox (11.99501pt too wide) in paragraph at lines 2945--2945 \T1/ptm/m/it/10 = Overfull \hbox (29.58485pt too wide) in paragraph at lines 2945--2945 \T1/ptm/m/it/10 True\T1/pcr/m/n/10 ) Underfull \hbox (badness 5832) in paragraph at lines 2948--2953 \T1/ptm/m/n/10 The re-port can only be used when the sim-u-la-tion setup pa-ram -e-ter \T1/ptm/b/n/10 Malaria_Model \T1/ptm/m/n/10 is set to Overfull \hbox (13.2345pt too wide) in paragraph at lines 2970--2970 []\T1/ptm/m/it/10 class_name: Underfull \hbox (badness 10000) in paragraph at lines 2970--2970 \T1/ptm/m/it/10 str = Underfull \hbox (badness 10000) in paragraph at lines 2970--2970 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2970--2970 \T1/ptm/m/it/10 pa-ram-e- Underfull \hbox (badness 10000) in paragraph at lines 2970--2970 \T1/ptm/m/it/10 tory>\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2970--2970 \T1/ptm/m/it/10 En-abled: Underfull \hbox (badness 10000) in paragraph at lines 2970--2970 \T1/ptm/m/it/10 bool Underfull \hbox (badness 10000) in paragraph at lines 2970--2970 \T1/ptm/m/it/10 = True\T1/ptm/m/n/10 , Overfull \hbox (24.5943pt too wide) in paragraph at lines 2970--2970 \T1/ptm/m/it/10 Pretty_Format: Underfull \hbox (badness 10000) in paragraph at lines 2970--2970 \T1/ptm/m/it/10 bool = [48] Underfull \hbox (badness 10000) in paragraph at lines 2995--2995 []\T1/ptm/m/it/10 class_name: str = Underfull \hbox (badness 10000) in paragraph at lines 2995--2995 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pa-ram-e-ters: Underfull \hbox (badness 6236) in paragraph at lines 3043--3043 []\T1/ptm/m/it/10 class_name: str = Underfull \hbox (badness 10000) in paragraph at lines 3043--3043 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pa-ram-e-ters: Underfull \hbox (badness 10000) in paragraph at lines 3043--3043 \T1/ptm/m/it/10 dict = \T1/ptm/m/n/10 , [49] Underfull \hbox (badness 10000) in paragraph at lines 3067--3067 []\T1/ptm/m/it/10 class_name: str Underfull \hbox (badness 7291) in paragraph at lines 3067--3067 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pa-ram- Underfull \hbox (badness 10000) in paragraph at lines 3067--3067 \T1/ptm/m/it/10 e-ters: dict = Underfull \hbox (badness 10000) in paragraph at lines 3067--3067 \T1/ptm/m/it/10 \T1/ptm/m/n/10 , \T1/ptm/m/it/10 En- Underfull \hbox (badness 10000) in paragraph at lines 3067--3067 \T1/ptm/m/it/10 Pretty_Format: Underfull \hbox (badness 10000) in paragraph at lines 3096--3096 []\T1/ptm/m/it/10 class_name: Underfull \hbox (badness 10000) in paragraph at lines 3096--3096 \T1/ptm/m/it/10 pa-ram-e- Underfull \hbox (badness 10000) in paragraph at lines 3096--3096 \T1/ptm/m/it/10 \T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3096--3096 \T1/ptm/m/it/10 En-abled: Overfull \hbox (6.5943pt too wide) in paragraph at lines 3096--3096 \T1/ptm/m/it/10 Pretty_Format: Overfull \hbox (13.2345pt too wide) in paragraph at lines 3140--3140 []\T1/ptm/m/it/10 class_name: Underfull \hbox (badness 10000) in paragraph at lines 3140--3140 \T1/ptm/m/it/10 str = Underfull \hbox (badness 10000) in paragraph at lines 3140--3140 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3140--3140 \T1/ptm/m/it/10 pa-ram-e- Underfull \hbox (badness 10000) in paragraph at lines 3140--3140 \T1/ptm/m/it/10 tory>\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3140--3140 \T1/ptm/m/it/10 En-abled: Underfull \hbox (badness 10000) in paragraph at lines 3140--3140 \T1/ptm/m/it/10 bool Underfull \hbox (badness 10000) in paragraph at lines 3140--3140 \T1/ptm/m/it/10 = True\T1/ptm/m/n/10 , Overfull \hbox (24.5943pt too wide) in paragraph at lines 3140--3140 \T1/ptm/m/it/10 Pretty_Format: Underfull \hbox (badness 10000) in paragraph at lines 3140--3140 \T1/ptm/m/it/10 bool = [50] Underfull \hbox (badness 10000) in paragraph at lines 3164--3164 []\T1/ptm/m/it/10 class_name: Underfull \hbox (badness 10000) in paragraph at lines 3164--3164 \T1/ptm/m/it/10 str = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3164--3164 \T1/ptm/m/it/10 pa-ram-e-ters: Underfull \hbox (badness 10000) in paragraph at lines 3164--3164 \T1/ptm/m/it/10 dict = \T1/ptm/m/n/10 , \T1/ptm/m/it/10 En-abled: Underfull \hbox (badness 10000) in paragraph at lines 3164--3164 \T1/ptm/m/it/10 bool = True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3164--3164 \T1/ptm/m/it/10 Pretty_Format: Overfull \hbox (67.2345pt too wide) in paragraph at lines 3187--3187 []\T1/ptm/m/it/10 class_name: Overfull \hbox (27.80469pt too wide) in paragraph at lines 3187--3187 \T1/ptm/m/it/10 str Overfull \hbox (23.99501pt too wide) in paragraph at lines 3187--3187 \T1/ptm/m/it/10 = Overfull \hbox (40.85487pt too wide) in paragraph at lines 3187--3187 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (30.57497pt too wide) in paragraph at lines 3187--3187 \T1/ptm/m/it/10 pa- Overfull \hbox (36.53493pt too wide) in paragraph at lines 3187--3187 \T1/ptm/m/it/10 ram- Overfull \hbox (25.01491pt too wide) in paragraph at lines 3187--3187 \T1/ptm/m/it/10 e- Overfull \hbox (35.4746pt too wide) in paragraph at lines 3187--3187 \T1/ptm/m/it/10 ters: Overfull \hbox (32.24474pt too wide) in paragraph at lines 3187--3187 \T1/ptm/m/it/10 dict Overfull \hbox (23.99501pt too wide) in paragraph at lines 3187--3187 \T1/ptm/m/it/10 = Overfull \hbox (39.5448pt too wide) in paragraph at lines 3187--3187 \T1/ptm/m/it/10 \T1/ptm/m/n/10 , Overfull \hbox (31.68495pt too wide) in paragraph at lines 3187--3187 \T1/ptm/m/it/10 En- Overfull \hbox (42.7948pt too wide) in paragraph at lines 3187--3187 \T1/ptm/m/it/10 abled: Overfull \hbox (35.0249pt too wide) in paragraph at lines 3187--3187 \T1/ptm/m/it/10 bool Overfull \hbox (23.99501pt too wide) in paragraph at lines 3187--3187 \T1/ptm/m/it/10 = Overfull \hbox (38.08485pt too wide) in paragraph at lines 3187--3187 \T1/ptm/m/it/10 True\T1/ptm/m/n/10 , Overfull \hbox (78.5943pt too wide) in paragraph at lines 3187--3187 \T1/ptm/m/it/10 Pretty_Format: Overfull \hbox (35.0249pt too wide) in paragraph at lines 3187--3187 \T1/ptm/m/it/10 bool Overfull \hbox (23.99501pt too wide) in paragraph at lines 3187--3187 \T1/ptm/m/it/10 = Overfull \hbox (41.58485pt too wide) in paragraph at lines 3187--3187 \T1/ptm/m/it/10 True\T1/pcr/m/n/10 ) [51] Underfull \hbox (badness 10000) in paragraph at lines 3215--3215 []\T1/ptm/m/it/10 class_name: str Underfull \hbox (badness 7291) in paragraph at lines 3215--3215 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pa-ram- Underfull \hbox (badness 10000) in paragraph at lines 3215--3215 \T1/ptm/m/it/10 e-ters: dict = Underfull \hbox (badness 10000) in paragraph at lines 3215--3215 \T1/ptm/m/it/10 \T1/ptm/m/n/10 , \T1/ptm/m/it/10 En- Underfull \hbox (badness 10000) in paragraph at lines 3215--3215 \T1/ptm/m/it/10 Pretty_Format: Overfull \hbox (37.2345pt too wide) in paragraph at lines 3239--3239 []\T1/ptm/m/it/10 class_name: Underfull \hbox (badness 10000) in paragraph at lines 3239--3239 \T1/ptm/m/it/10 str Underfull \hbox (badness 10000) in paragraph at lines 3239--3239 \T1/ptm/m/it/10 = Overfull \hbox (10.85487pt too wide) in paragraph at lines 3239--3239 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (0.57497pt too wide) in paragraph at lines 3239--3239 \T1/ptm/m/it/10 pa- Overfull \hbox (6.53493pt too wide) in paragraph at lines 3239--3239 \T1/ptm/m/it/10 ram- Underfull \hbox (badness 10000) in paragraph at lines 3239--3239 \T1/ptm/m/it/10 e- Overfull \hbox (5.4746pt too wide) in paragraph at lines 3239--3239 \T1/ptm/m/it/10 ters: Overfull \hbox (2.24474pt too wide) in paragraph at lines 3239--3239 \T1/ptm/m/it/10 dict Underfull \hbox (badness 10000) in paragraph at lines 3239--3239 \T1/ptm/m/it/10 = Overfull \hbox (9.5448pt too wide) in paragraph at lines 3239--3239 \T1/ptm/m/it/10 \T1/ptm/m/n/10 , Overfull \hbox (1.68495pt too wide) in paragraph at lines 3239--3239 \T1/ptm/m/it/10 En- Overfull \hbox (12.7948pt too wide) in paragraph at lines 3239--3239 \T1/ptm/m/it/10 abled: Overfull \hbox (5.0249pt too wide) in paragraph at lines 3239--3239 \T1/ptm/m/it/10 bool Underfull \hbox (badness 10000) in paragraph at lines 3239--3239 \T1/ptm/m/it/10 = Overfull \hbox (8.08485pt too wide) in paragraph at lines 3239--3239 \T1/ptm/m/it/10 True\T1/ptm/m/n/10 , Overfull \hbox (48.5943pt too wide) in paragraph at lines 3239--3239 \T1/ptm/m/it/10 Pretty_Format: Overfull \hbox (5.0249pt too wide) in paragraph at lines 3239--3239 \T1/ptm/m/it/10 bool Underfull \hbox (badness 10000) in paragraph at lines 3239--3239 \T1/ptm/m/it/10 = Overfull \hbox (11.58485pt too wide) in paragraph at lines 3239--3239 \T1/ptm/m/it/10 True\T1/pcr/m/n/10 ) [52] Underfull \hbox (badness 10000) in paragraph at lines 3292--3292 []\T1/ptm/m/it/10 config\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/ 10 , Overfull \hbox (24.52415pt too wide) in paragraph at lines 3292--3292 \T1/ptm/m/it/10 var_gene_randomness_type: Underfull \hbox (badness 10000) in paragraph at lines 3292--3292 [][]\T1/ptm/m/it/10 str[][] = Underfull \hbox (badness 10000) in paragraph at lines 3293--3295 \T1/ptm/m/n/10 Sets up the de-fault pa-ram-e-ters for par-a-site ge-net-ics sim -u-la-tions Malaria_Model = [53] [54] [55] [56] Underfull \hbox (badness 10000) in paragraph at lines 3667--3667 []\T1/ptm/m/it/10 config\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/ 10 , \T1/ptm/m/it/10 in-sec- Underfull \hbox (badness 6675) in paragraph at lines 3667--3667 \T1/ptm/m/it/10 ti-cide_name: [][]str[][] = \TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , Underfull \hbox (badness 5939) in paragraph at lines 3667--3667 \T1/ptm/m/it/10 species: [][]str[][] = \TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , \T1/ ptm/m/it/10 al- Underfull \hbox (badness 6047) in paragraph at lines 3667--3667 \T1/ptm/m/it/10 block-ing: [][]float[][] = 1.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3667--3667 \T1/ptm/m/it/10 pelling: [][]float[][] = 1.0\T1/ptm/m/n/10 , [57] [58] [59] [60] LaTeX Warning: Reference `emodpy_malaria:module-emodpy_malaria' on page 61 unde fined on input line 3835. LaTeX Warning: Reference `emodpy_malaria.demographics:module-emodpy_malaria.dem ographics' on page 61 undefined on input line 3836. LaTeX Warning: Reference `emodpy_malaria.demographics.MalariaDemographics:modul e-emodpy_malaria.demographics.MalariaDemographics' on page 61 undefined on inpu t line 3837. Overfull \hbox (54.6225pt too wide) in paragraph at lines 3837--3838 []\T1/pcr/m/n/10 emodpy_malaria.demographics.MalariaDemographics\T1/ptm/m/n/10 , LaTeX Warning: Reference `emodpy_malaria.interventions:module-emodpy_malaria.in terventions' on page 61 undefined on input line 3838. LaTeX Warning: Reference `emodpy_malaria.interventions.bednet:module-emodpy_mal aria.interventions.bednet' on page 61 undefined on input line 3839. LaTeX Warning: Reference `emodpy_malaria.interventions.common:module-emodpy_mal aria.interventions.common' on page 61 undefined on input line 3840. 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LaTeX Warning: Reference `emodpy_malaria.reporters:module-emodpy_malaria.report ers' on page 61 undefined on input line 3856. LaTeX Warning: Reference `emodpy_malaria.reporters.builtin:module-emodpy_malari a.reporters.builtin' on page 61 undefined on input line 3857. LaTeX Warning: Reference `emodpy_malaria.vector_config:module-emodpy_malaria.ve ctor_config' on page 61 undefined on input line 3858. [61] No file institute-for-disease-modeling-emodpy-malaria.ind. (./institute-for-disease-modeling-emodpy-malaria.aux) Package rerunfilecheck Warning: File `institute-for-disease-modeling-emodpy-mal aria.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on institute-for-disease-modeling-emodpy-malaria.pdf (65 pages, 269317 bytes). Transcript written on institute-for-disease-modeling-emodpy-malaria.log. Latexmk: Index file 'institute-for-disease-modeling-emodpy-malaria.idx' was written Latexmk: Missing input file: 'institute-for-disease-modeling-emodpy-malaria.ind' from line 'No file institute-for-disease-modeling-emodpy-malaria.ind.' Latexmk: References changed. Latexmk: References changed. Latexmk: Log file says output to 'institute-for-disease-modeling-emodpy-malaria.pdf' Latexmk: Log file says output to 'institute-for-disease-modeling-emodpy-malaria.pdf' Latexmk: List of undefined refs and citations: Reference `emodpy_malaria.demographics.MalariaDemographics:module-emodpy_malaria.demographics.MalariaDemographics' on page 61 undefined on input line 3837 Reference `emodpy_malaria.demographics:module-emodpy_malaria.demographics' on page 61 undefined on input line 3836 Reference `emodpy_malaria.interventions.bednet:module-emodpy_malaria.interventions.bednet' on page 61 undefined on input line 3839 Reference `emodpy_malaria.interventions.common:module-emodpy_malaria.interventions.common' on page 61 undefined on input line 3840 Reference `emodpy_malaria.interventions.diag_survey:module-emodpy_malaria.interventions.diag_survey' on page 61 undefined on input line 3841 Reference `emodpy_malaria.interventions.drug:module-emodpy_malaria.interventions.drug' on page 61 undefined on input line 3842 Reference `emodpy_malaria.interventions.drug_campaign:module-emodpy_malaria.interventions.drug_campaign' on page 61 undefined on input line 3843 Reference `emodpy_malaria.interventions.inputeir:module-emodpy_malaria.interventions.inputeir' on page 61 undefined on input line 3844 Reference `emodpy_malaria.interventions.irs:module-emodpy_malaria.interventions.irs' on page 61 undefined on input line 3845 Reference `emodpy_malaria.interventions.ivermectin:module-emodpy_malaria.interventions.ivermectin' on page 61 undefined on input line 3846 Reference `emodpy_malaria.interventions.mosquitorelease:module-emodpy_malaria.interventions.mosquitorelease' on page 61 undefined on input line 3847 Reference `emodpy_malaria.interventions.outbreakindividualmalariagenetics:module-emodpy_malaria.interventions.outbreakindividualmalariagenetics' on page 61 undefined on input line 3848 Reference `emodpy_malaria.interventions.outbreakindividualmalariavargenes:module-emodpy_malaria.interventions.outbreakindividualmalariavargenes' on page 61 undefined on input line 3849 Reference `emodpy_malaria.interventions.outdoorrestkill:module-emodpy_malaria.interventions.outdoorrestkill' on page 61 undefined on input line 3850 Reference `emodpy_malaria.interventions.spacespraying:module-emodpy_malaria.interventions.spacespraying' on page 61 undefined on input line 3851 Reference `emodpy_malaria.interventions.sugartrap:module-emodpy_malaria.interventions.sugartrap' on page 61 undefined on input line 3852 Reference `emodpy_malaria.interventions.treatment_seeking:module-emodpy_malaria.interventions.treatment_seeking' on page 61 undefined on input line 3853 Reference `emodpy_malaria.interventions.udbednet:module-emodpy_malaria.interventions.udbednet' on page 61 undefined on input line 3854 Reference `emodpy_malaria.interventions:module-emodpy_malaria.interventions' on page 61 undefined on input line 3838 Reference `emodpy_malaria.malaria_config:module-emodpy_malaria.malaria_config' on page 61 undefined on input line 3855 Reference `emodpy_malaria.reporters.builtin:module-emodpy_malaria.reporters.builtin' on page 61 undefined on input line 3857 Reference `emodpy_malaria.reporters:module-emodpy_malaria.reporters' on page 61 undefined on input line 3856 Reference `emodpy_malaria.vector_config:module-emodpy_malaria.vector_config' on page 61 undefined on input line 3858 Reference `emodpy_malaria:module-emodpy_malaria' on page 61 undefined on input line 3835 Latexmk: Summary of warnings: Latex failed to resolve 24 reference(s) Rule 'makeindex institute-for-disease-modeling-emodpy-malaria.idx': File changes, etc: Non-existent destination files: 'institute-for-disease-modeling-emodpy-malaria.ind' ------------ Run number 1 of rule 'makeindex institute-for-disease-modeling-emodpy-malaria.idx' ------------ ------------ Running 'makeindex -s python.ist -o "institute-for-disease-modeling-emodpy-malaria.ind" "institute-for-disease-modeling-emodpy-malaria.idx"' ------------ Latexmk: applying rule 'makeindex institute-for-disease-modeling-emodpy-malaria.idx'... This is makeindex, version 2.15 [TeX Live 2017] (kpathsea + Thai support). Scanning style file ./python.ist.......done (7 attributes redefined, 0 ignored). Scanning input file institute-for-disease-modeling-emodpy-malaria.idx....done (175 entries accepted, 0 rejected). Sorting entries....done (1401 comparisons). Generating output file institute-for-disease-modeling-emodpy-malaria.ind....done (382 lines written, 0 warnings). Output written in institute-for-disease-modeling-emodpy-malaria.ind. Transcript written in institute-for-disease-modeling-emodpy-malaria.ilg. 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(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) [3] [4] Chapter 2. [5] Underfull \hbox (badness 10000) in paragraph at lines 319--321 []\T1/ptm/m/n/10 Install at a com-mand [6] [7] [8] Chapter 3. 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pop=1000000.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 510--510 \T1/ptm/m/it/10 name=1\T1/ptm/m/n/10 , Overfull \hbox (9.45456pt too wide) in paragraph at lines 510--510 \T1/ptm/m/it/10 forced_id=1\T1/ptm/m/n/10 , Overfull \hbox (18.08455pt too wide) in paragraph at lines 510--510 \T1/ptm/m/it/10 init_prev=0.2\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 546--546 []\T1/ptm/m/it/10 pop_filename_in\T1/ptm/m/n/10 , Overfull \hbox (106.44351pt too wide) in paragraph at lines 546--546 \T1/ptm/m/it/10 pop_filename_out=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 spatial_grid ded_pop_dir\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 572--572 []\T1/ptm/m/it/10 tot_pop=1000000.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 572--572 \T1/ptm/m/it/10 num_nodes=100\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 572--572 \T1/ptm/m/it/10 frac_rural=0.3\T1/ptm/m/n/10 , Overfull \hbox (9.35394pt too wide) in paragraph at lines 572--572 \T1/ptm/m/it/10 id_ref=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 from_params\TS1/ptm/m/ it/10 '\T1/pcr/m/n/10 ) [10] Underfull \hbox (badness 10000) in paragraph at lines 616--616 [][]\T1/ptm/m/it/10 float[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 block-ing_pre decay_duration: Underfull \hbox (badness 10000) in paragraph at lines 616--616 [][]\T1/ptm/m/it/10 int[][] = 365\T1/ptm/m/n/10 , \T1/ptm/m/it/10 killing_decay _rate: [][]float[][] Underfull \hbox (badness 10000) in paragraph at lines 616--616 \T1/ptm/m/it/10 = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 killing_predecay_duration: [][]int[][] Underfull \hbox (badness 10000) in paragraph at lines 616--616 \T1/ptm/m/it/10 = 365\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-pelling_decay_rate: [] []float[][] = Underfull \hbox (badness 10000) in paragraph at lines 616--616 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-pelling_predecay_duration: [][]int[][] = Underfull \hbox (badness 5091) in paragraph at lines 616--616 \T1/ptm/m/it/10 365\T1/ptm/m/n/10 , \T1/ptm/m/it/10 us-age_decay_rate: [][]floa t[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 us- [11] Underfull \hbox (badness 10000) in paragraph at lines 693--693 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age=1.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 693--693 \T1/ptm/m/it/10 block-ing_eff=1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 killing_eff=1\T 1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 736--736 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day\T1/ptm/m/n/10 , [12] Underfull \hbox (badness 10000) in paragraph at lines 767--767 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Mea-sure- Underfull \hbox (badness 10000) in paragraph at lines 767--767 \T1/ptm/m/it/10 ment_Sensitivity\T1/ptm/m/n/10 , \T1/ptm/m/it/10 De-tec- Underfull \hbox (badness 10000) in paragraph at lines 767--767 \T1/ptm/m/it/10 tion_Threshold\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Di-ag-nos- Overfull \hbox (31.21352pt too wide) in paragraph at lines 836--836 \T1/ptm/m/it/10 tsteps_btwn_repetitions: Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 get: [][]ob-ject[][] Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Ev-ery-one\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 6364) in paragraph at lines 836--836 \T1/ptm/m/it/10 start_day: [][]int[][] Underfull \hbox (badness 5203) in paragraph at lines 836--836 \T1/ptm/m/it/10 = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 di-ag-nos- Overfull \hbox (63.55446pt too wide) in paragraph at lines 836--836 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 BLOOD_SMEAR_PARASITES\TS1/ptm/m/it/10 '\T1/pt m/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 di-ag-nos- Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 tic_threshold: Underfull \hbox (badness 10000) in paragraph at lines 836--836 [][]\T1/ptm/m/it/10 float[][] = 40\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 mea-sure- Overfull \hbox (1.01384pt too wide) in paragraph at lines 836--836 \T1/ptm/m/it/10 ment_sensitivity: Underfull \hbox (badness 10000) in paragraph at lines 836--836 [][]\T1/ptm/m/it/10 float[][] = 0.1\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 event_name: Underfull \hbox (badness 10000) in paragraph at lines 836--836 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Di-ag- Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 nos-tic Sur-vey\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 6364) in paragraph at lines 836--836 \T1/ptm/m/it/10 node_ids: [][]list[][] Overfull \hbox (27.58405pt too wide) in paragraph at lines 836--836 \T1/ptm/m/it/10 tive_diagnosis_configs: Underfull \hbox (badness 10000) in paragraph at lines 836--836 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 neg-a- Overfull \hbox (27.58405pt too wide) in paragraph at lines 836--836 \T1/ptm/m/it/10 tive_diagnosis_configs: Overfull \hbox (6.95406pt too wide) in paragraph at lines 836--836 \T1/ptm/m/it/10 ceived_test_event: Underfull \hbox (badness 10000) in paragraph at lines 836--836 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Re- Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 ceived_Test\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 IP_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 836--836 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 NP_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 836--836 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 dis-qual-i-fy- Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 ing_properties: Overfull \hbox (9.814pt too wide) in paragraph at lines 836--836 \T1/ptm/m/it/10 ger_condition_list: Underfull \hbox (badness 10000) in paragraph at lines 836--836 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 lis-ten- Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 ing_duration: Overfull \hbox (29.97432pt too wide) in paragraph at lines 836--836 \T1/ptm/m/it/10 gered_campaign_delay: Underfull \hbox (badness 10000) in paragraph at lines 836--836 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , Overfull \hbox (47.68343pt too wide) in paragraph at lines 836--836 \T1/ptm/m/it/10 check_eligibility_at_trigger: Overfull \hbox (9.71407pt too wide) in paragraph at lines 836--836 \T1/ptm/m/it/10 pire_recent_drugs: [13] [14] Underfull \hbox (badness 10000) in paragraph at lines 869--872 []\T1/pcr/b/n/10 diagnostic_type \T1/ptm/m/n/10 ^^U Type of malaria di-ag-nos-t ic used. De-fault is Underfull \hbox (badness 10000) in paragraph at lines 911--914 []\T1/ptm/m/n/10 In ga-me-to-cytes/microliter, use mea-sure- Underfull \hbox (badness 10000) in paragraph at lines 934--936 []\T1/pcr/b/n/10 measurement_sensitivity \T1/ptm/m/n/10 ^^U Set-ting for \T1/pt m/b/n/10 Mea-sure-ment_Sensitivity \T1/ptm/m/n/10 in [15] Underfull \hbox (badness 10000) in paragraph at lines 957--962 []\T1/pcr/b/n/10 IP_restrictions \T1/ptm/m/n/10 ^^U List of In-di-vid-u-al-Prop -erty key:value pairs that Underfull \hbox (badness 10000) in paragraph at lines 957--962 \T1/ptm/m/n/10 in-di-vid-u-als must have to re-ceive the di-ag-nos-tic in-ter-v en-tion. For Underfull \hbox (badness 10000) in paragraph at lines 957--962 \T1/ptm/m/n/10 ex-am-ple, \T1/pcr/m/n/10 [{"IndividualProperty1":"PropertyValue 1"}, Underfull \hbox (badness 10000) in paragraph at lines 964--969 []\T1/pcr/b/n/10 NP_restrictions \T1/ptm/m/n/10 ^^U List of Node-Prop-erty key: value pairs Underfull \hbox (badness 10000) in paragraph at lines 964--969 \T1/ptm/m/n/10 that nodes must have to re-ceive the di-ag-nos-tic in-ter-ven-ti on. Underfull \hbox (badness 10000) in paragraph at lines 964--969 \T1/ptm/m/n/10 For ex-am-ple, \T1/pcr/m/n/10 [{"NodeProperty1":"PropertyValue1" }, Underfull \hbox (badness 10000) in paragraph at lines 971--975 []\T1/pcr/b/n/10 disqualifying_properties \T1/ptm/m/n/10 ^^U List of In-di-vid- u-al-Prop-erty Underfull \hbox (badness 10000) in paragraph at lines 971--975 \T1/ptm/m/n/10 key:value pairs that cause an in-ter-ven-tion to be aborted. For ex- Underfull \hbox (badness 10000) in paragraph at lines 971--975 \T1/ptm/m/n/10 am-ple, \T1/pcr/m/n/10 [{"IndividualProperty1":"PropertyValue1"} , Underfull \hbox (badness 10000) in paragraph at lines 994--997 []\T1/pcr/b/n/10 expire_recent_drugs \T1/ptm/m/n/10 ^^U Adds \T1/pcr/m/n/10 [{" DrugStatus:None"}] \T1/ptm/m/n/10 to \T1/ptm/b/n/10 Prop- [16] Underfull \hbox (badness 10000) in paragraph at lines 1083--1083 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1083--1083 \T1/ptm/m/it/10 drug_code: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cam- Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 paign_type: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 MDA\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 6775) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_days: Overfull \hbox (19.21352pt too wide) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 tsteps_btwn_repetitions: Underfull \hbox (badness 7344) in paragraph at lines 1114--1114 [][]\T1/ptm/m/it/10 int[][] = 60\T1/ptm/m/n/10 , \T1/ptm/m/it/10 di-ag- Overfull \hbox (51.55446pt too wide) in paragraph at lines 1114--1114 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 BLOOD_SMEAR_PARASITES\TS1/ptm/m/it/10 '\T1/pt m/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 di-ag-nos- Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 = 40\T1/ptm/m/n/10 , \T1/ptm/m/it/10 mea-sure- Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 ment_sensitivity: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 [][]\T1/ptm/m/it/10 float[][] = 0.1\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 fmda_radius: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , Overfull \hbox (6.22408pt too wide) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 node_selection_type: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 DIS- Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 TANCE_ONLY\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 trig-ger_coverage: Underfull \hbox (badness 5667) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 balls: [][]int[][] = 0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 treat-ment_delay: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 trig- Overfull \hbox (17.97432pt too wide) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 gered_campaign_delay: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 tar-get_group: Overfull \hbox (33.88365pt too wide) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 drug_ineligibility_duration: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , Overfull \hbox (33.19351pt too wide) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Overfull \hbox (26.53346pt too wide) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 dis-qual-i-fy- Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 ing_properties: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 ger_condition_list: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 ten-ing_duration: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 ent_drug_configs: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 get_residents_only: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 [][]\T1/ptm/m/it/10 int[][] = 1\T1/ptm/m/n/10 , Overfull \hbox (35.68343pt too wide) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 check_eligibility_at_trigger: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 [][]\T1/ptm/m/it/10 bool[][] = Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 False\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-ceiv- Overfull \hbox (144.47322pt too wide) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 ing_drugs_event_name=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Received _Campaign_Drugs\TS1/ptm/m/it/10 '\T1/pcr/m/n/10 ) [17] [18] [19] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pcr.fd) Underfull \hbox (badness 10000) in paragraph at lines 1265--1268 []\T1/pcr/b/n/10 ind_property_restrictions \T1/ptm/m/n/10 ^^U The set-ting for \T1/ptm/b/n/10 Prop- Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_days: [][]list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age: [][]float[][] = Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 drug_configs: [][]list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-ceiv-ing_drugs_event: Overfull \hbox (57.71327pt too wide) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 emod_api.interventions.common.BroadcastEvent Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 rep-e-ti-tions: [][]int[ ][] = Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tsteps_btwn_repetitions: Underfull \hbox (badness 6348) in paragraph at lines 1310--1310 [][]\T1/ptm/m/it/10 int[][] = 60\T1/ptm/m/n/10 , \T1/ptm/m/it/10 node_ids: [][] list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ex-pire_recent_drugs: Overfull \hbox (86.50304pt too wide) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 emod_api.interventions.common.PropertyValueChanger Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 6032) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 dis-qual-i- fy- Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 ing_properties: [][]list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 trig-ger_condition_list: [][]list[][] = [20] Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_days: [][]list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age: [][]float[][] = Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 \T1/ptm/m/it/10 1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 drug_configs: [][]list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-ceiv-ing_drugs_event: Overfull \hbox (63.71327pt too wide) in paragraph at lines 1325--1325 \T1/ptm/m/it/10 emod_api.interventions.common.BroadcastEvent Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 \T1/ptm/m/it/10 tsteps_btwn_repetitions: [][]int[][] Underfull \hbox (badness 7504) in paragraph at lines 1325--1325 \T1/ptm/m/it/10 = 60\T1/ptm/m/n/10 , \T1/ptm/m/it/10 treat-ment_delay: [][]int[ ][] Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 BLOOD_SMEAR_PARASITES\TS1/ptm/m/it/10 '\T1/pt m/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 \T1/ptm/m/it/10 40\T1/ptm/m/n/10 , \T1/ptm/m/it/10 mea-sure-ment_sensitivity: Underfull \hbox (badness 6063) in paragraph at lines 1325--1325 [][]\T1/ptm/m/it/10 float[][] = 0.1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 node_ids: [ ][]list[][] Overfull \hbox (92.50304pt too wide) in paragraph at lines 1325--1325 \T1/ptm/m/it/10 emod_api.interventions.common.PropertyValueChanger Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar-get_gro up: Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 \T1/ptm/m/it/10 any = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Ev-ery-one\TS1/ptm/m/it /10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 trig- Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 \T1/ptm/m/it/10 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 check_eligibility_at_trigger: Underfull \hbox (badness 10000) in paragraph at lines 1326--1329 \T1/ptm/m/n/10 Add an MSAT (mass screen-ing and treat-ment) drug in-ter-ven-tio n to your cam-paign. See [21] Underfull \hbox (badness 10000) in paragraph at lines 1340--1340 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_days: [][]list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1340--1340 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 trig-ger_coverage: Underfull \hbox (badness 7221) in paragraph at lines 1340--1340 [][]\T1/ptm/m/it/10 float[][] = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age: [ ][]float[][] Underfull \hbox (badness 7595) in paragraph at lines 1340--1340 \T1/ptm/m/it/10 = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 drug_configs: [][]list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1340--1340 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-ceiv-ing_drugs_event: Overfull \hbox (63.71327pt too wide) in paragraph at lines 1340--1340 \T1/ptm/m/it/10 emod_api.interventions.common.BroadcastEvent Underfull \hbox (badness 10000) in paragraph at lines 1340--1340 \T1/ptm/m/it/10 tsteps_btwn_repetitions: [][]int[][] Underfull \hbox (badness 10000) in paragraph at lines 1340--1340 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 BLOOD_SMEAR_PARASITES\TS1/ptm/m/it/10 '\T1/pt m/m/n/10 , Overfull \hbox (92.50304pt too wide) in paragraph at lines 1340--1340 \T1/ptm/m/it/10 emod_api.interventions.common.PropertyValueChanger Underfull \hbox (badness 10000) in paragraph at lines 1340--1340 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1340--1340 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1340--1340 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1340--1340 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar-get_gro up: Underfull \hbox (badness 10000) in paragraph at lines 1340--1340 \T1/ptm/m/it/10 any = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Ev-ery-one\TS1/ptm/m/it /10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 trig- Underfull \hbox (badness 7869) in paragraph at lines 1341--1344 \T1/ptm/m/n/10 Add an fMDA (fo-cal mass drug ad-min-is-tra-tion) drug in-ter-ve n-tion to your cam-paign. See Underfull \hbox (badness 10000) in paragraph at lines 1355--1355 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day: [][]int[][] = Underfull \hbox (badness 6141) in paragraph at lines 1355--1355 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age: [][]float[][] = 1 \T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1355--1355 \T1/ptm/m/it/10 re-ceiv-ing_drugs_event: Overfull \hbox (75.71327pt too wide) in paragraph at lines 1355--1355 \T1/ptm/m/it/10 emod_api.interventions.common.BroadcastEvent Overfull \hbox (9.55446pt too wide) in paragraph at lines 1355--1355 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 BLOOD_SMEAR_PARASITES\TS1/ptm/m/it/10 '\T1/pt m/m/n/10 , Overfull \hbox (104.50304pt too wide) in paragraph at lines 1355--1355 \T1/ptm/m/it/10 emod_api.interventions.common.PropertyValueChanger Underfull \hbox (badness 10000) in paragraph at lines 1355--1355 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1355--1355 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1355--1355 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1355--1355 \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1355--1355 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 dis-qual-i- fy- [22] Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day: [][]int[][] = Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age: [][]float[][] = 1 \T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 \T1/ptm/m/it/10 re-ceiv-ing_drugs_event: Overfull \hbox (69.71327pt too wide) in paragraph at lines 1370--1370 \T1/ptm/m/it/10 emod_api.interventions.common.BroadcastEvent Underfull \hbox (badness 7613) in paragraph at lines 1370--1370 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lis-ten-ing_duration: Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 trig-ger_covera ge: Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 \T1/ptm/m/it/10 = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 node_selection_type: Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 DIS-TANCE_ONLY\ TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 \T1/ptm/m/it/10 node_ids: [][]list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 \T1/ptm/m/it/10 ex-pire_recent_drugs: Overfull \hbox (98.50304pt too wide) in paragraph at lines 1370--1370 \T1/ptm/m/it/10 emod_api.interventions.common.PropertyValueChanger Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 dis-qual-i- fy- Underfull \hbox (badness 10000) in paragraph at lines 1385--1385 \T1/ptm/m/it/10 TANCE_ONLY\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ev ent_trigger: [23] Underfull \hbox (badness 5091) in paragraph at lines 1444--1444 [][]\T1/ptm/m/it/10 int[][] = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 node_ids: [][]l ist[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1477--1477 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1477--1477 \T1/ptm/m/it/10 monthly_eir: Underfull \hbox (badness 10000) in paragraph at lines 1477--1477 [][]\T1/ptm/m/it/10 list[][]\T1/ptm/m/n/10 , \T1/ptm/m/it/10 file-name: [24] Underfull \hbox (badness 5274) in paragraph at lines 1509--1509 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er- Underfull \hbox (badness 10000) in paragraph at lines 1509--1509 \T1/ptm/m/it/10 killing_eff=1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in- Underfull \hbox (badness 10000) in paragraph at lines 1509--1509 \T1/ptm/m/it/10 sec-ti-cide=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1530--1530 []\T1/ptm/m/it/10 schema_path_container\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1530--1530 [][]\T1/ptm/m/it/10 float[][] = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-mo- Underfull \hbox (badness 10000) in paragraph at lines 1530--1530 \T1/ptm/m/it/10 killing_exponential_decay_rate: [25] Underfull \hbox (badness 10000) in paragraph at lines 1573--1573 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1573--1573 \T1/ptm/m/it/10 re-leased_number: Underfull \hbox (badness 5954) in paragraph at lines 1573--1573 [][]\T1/ptm/m/it/10 int[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 1573--1573 \T1/ptm/m/it/10 leased_fraction: Underfull \hbox (badness 10000) in paragraph at lines 1573--1573 \T1/ptm/m/it/10 leased_infectious: Underfull \hbox (badness 10000) in paragraph at lines 1573--1573 [][]\T1/ptm/m/it/10 float[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 1573--1573 \T1/ptm/m/it/10 leased_species: Underfull \hbox (badness 10000) in paragraph at lines 1573--1573 \T1/ptm/m/it/10 re-leased_genome: Underfull \hbox (badness 10000) in paragraph at lines 1573--1573 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1593--1595 []\T1/pcr/b/n/10 released_infectious \T1/ptm/m/n/10 ^^U The frac-tion of vec-to rs re-leased that Underfull \hbox (badness 10000) in paragraph at lines 1593--1595 \T1/ptm/m/n/10 are to be in-fec-tious. One can only use this fea-ture when Overfull \hbox (16.27205pt too wide) in paragraph at lines 1593--1595 \T1/ptm/m/n/10 `Malaria_Model'!='MALARIA_MECHANISTIC_MODEL_WITH_PARASITE_GENETI CS' Underfull \hbox (badness 10000) in paragraph at lines 1619--1619 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Overfull \hbox (16.35448pt too wide) in paragraph at lines 1619--1619 \T1/ptm/m/it/10 start_day: Underfull \hbox (badness 10000) in paragraph at lines 1619--1619 [][]\T1/ptm/m/it/10 int[][] Underfull \hbox (badness 10000) in paragraph at lines 1619--1619 \T1/ptm/m/it/10 = 1\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1619--1619 \T1/ptm/m/it/10 file- Overfull \hbox (2.35487pt too wide) in paragraph at lines 1619--1619 \T1/ptm/m/it/10 None\T1/pcr/m/n/10 ) [26] Overfull \hbox (235.6943pt too wide) in paragraph at lines 1645--1645 []\T1/ptm/m/it/10 schema_path_container\T1/ptm/m/n/10 , Overfull \hbox (178.35448pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 start_day: Overfull \hbox (147.8048pt too wide) in paragraph at lines 1645--1645 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (143.99501pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 = Overfull \hbox (144.74501pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 1\T1/ptm/m/n/10 , Overfull \hbox (150.01491pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 de- Overfull \hbox (152.79494pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 mo- Overfull \hbox (212.73457pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 graphic_coverage: Overfull \hbox (155.0249pt too wide) in paragraph at lines 1645--1645 [][]\T1/ptm/m/it/10 float[][] Overfull \hbox (143.99501pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 = Overfull \hbox (152.24501pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 1.0\T1/ptm/m/n/10 , Overfull \hbox (152.0448pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 tar- Overfull \hbox (224.36418pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 get_num_individuals: Overfull \hbox (147.8048pt too wide) in paragraph at lines 1645--1645 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (143.99501pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 = Overfull \hbox (160.85487pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (152.97473pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 cre- Overfull \hbox (264.54375pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 ate_nucleotide_sequence_from: Overfull \hbox (147.80469pt too wide) in paragraph at lines 1645--1645 [][]\T1/ptm/m/it/10 str[][] Overfull \hbox (143.99501pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 = Overfull \hbox (160.79482pt too wide) in paragraph at lines 1645--1645 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 BAR- Overfull \hbox (207.99452pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 CODE_STRING\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (154.26491pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 bar- Overfull \hbox (187.79442pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 code_string: Overfull \hbox (147.80469pt too wide) in paragraph at lines 1645--1645 [][]\T1/ptm/m/it/10 str[][] Overfull \hbox (143.99501pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 = Overfull \hbox (160.85487pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (226.88371pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 drug_resistant_string: Overfull \hbox (147.80469pt too wide) in paragraph at lines 1645--1645 [][]\T1/ptm/m/it/10 str[][] Overfull \hbox (143.99501pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 = Overfull \hbox (160.85487pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (217.23422pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 msp_variant_value: Overfull \hbox (147.8048pt too wide) in paragraph at lines 1645--1645 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (143.99501pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 = Overfull \hbox (160.85487pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (238.34395pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 pfemp1_variants_values: Overfull \hbox (149.47458pt too wide) in paragraph at lines 1645--1645 [][]\T1/ptm/m/it/10 list[][] Overfull \hbox (143.99501pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 = Overfull \hbox (160.85487pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (154.26491pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 bar- Overfull \hbox (329.51305pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 code_allele_frequencies_per_genome_location: Overfull \hbox (149.47458pt too wide) in paragraph at lines 1645--1645 [][]\T1/ptm/m/it/10 list[][] Overfull \hbox (143.99501pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 = Overfull \hbox (160.85487pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (368.60234pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 drug_resistant_allele_frequencies_per_genome_location: Overfull \hbox (149.47458pt too wide) in paragraph at lines 1645--1645 [][]\T1/ptm/m/it/10 list[][] Overfull \hbox (143.99501pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 = Overfull \hbox (164.35487pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 None\T1/pcr/m/n/10 ) [27] [28] Underfull \hbox (badness 10000) in paragraph at lines 1694--1698 []\T1/pcr/b/n/10 drug_resistant_allele_frequencies_per_genome_location \T1/ptm/ m/n/10 ^^U ^^PThe [29] Overfull \hbox (235.6943pt too wide) in paragraph at lines 1722--1722 []\T1/ptm/m/it/10 schema_path_container\T1/ptm/m/n/10 , Overfull \hbox (178.35448pt too wide) in paragraph at lines 1722--1722 \T1/ptm/m/it/10 start_day: Overfull \hbox (147.8048pt too wide) in paragraph at lines 1722--1722 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (143.99501pt too wide) in paragraph at lines 1722--1722 \T1/ptm/m/it/10 = Overfull \hbox (144.74501pt too wide) in paragraph at lines 1722--1722 \T1/ptm/m/it/10 1\T1/ptm/m/n/10 , Overfull \hbox (150.01491pt too wide) in paragraph at lines 1722--1722 \T1/ptm/m/it/10 de- Overfull \hbox (152.79494pt too wide) in paragraph at lines 1722--1722 \T1/ptm/m/it/10 mo- Overfull \hbox (212.73457pt too wide) in paragraph at lines 1722--1722 \T1/ptm/m/it/10 graphic_coverage: Overfull \hbox (155.0249pt too wide) in paragraph at lines 1722--1722 [][]\T1/ptm/m/it/10 float[][] Overfull \hbox (143.99501pt too wide) in paragraph at lines 1722--1722 \T1/ptm/m/it/10 = Overfull \hbox (152.24501pt too wide) in paragraph at lines 1722--1722 \T1/ptm/m/it/10 1.0\T1/ptm/m/n/10 , Overfull \hbox (152.0448pt too wide) in paragraph at lines 1722--1722 \T1/ptm/m/it/10 tar- Overfull \hbox (224.36418pt too wide) in paragraph at lines 1722--1722 \T1/ptm/m/it/10 get_num_individuals: Overfull \hbox (147.8048pt too wide) in paragraph at lines 1722--1722 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (143.99501pt too wide) in paragraph at lines 1722--1722 \T1/ptm/m/it/10 = Overfull \hbox (160.85487pt too wide) in paragraph at lines 1722--1722 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (178.34447pt too wide) in paragraph at lines 1722--1722 \T1/ptm/m/it/10 irbc_type: Overfull \hbox (149.47458pt too wide) in paragraph at lines 1722--1722 [][]\T1/ptm/m/it/10 list[][] Overfull \hbox (143.99501pt too wide) in paragraph at lines 1722--1722 \T1/ptm/m/it/10 = Overfull \hbox (160.85487pt too wide) in paragraph at lines 1722--1722 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (150.57483pt too wide) in paragraph at lines 1722--1722 \T1/ptm/m/it/10 mi- Overfull \hbox (210.5643pt too wide) in paragraph at lines 1722--1722 \T1/ptm/m/it/10 nor_epitope_type: Overfull \hbox (149.47458pt too wide) in paragraph at lines 1722--1722 [][]\T1/ptm/m/it/10 list[][] Overfull \hbox (143.99501pt too wide) in paragraph at lines 1722--1722 \T1/ptm/m/it/10 = Overfull \hbox (160.85487pt too wide) in paragraph at lines 1722--1722 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (178.3446pt too wide) in paragraph at lines 1722--1722 \T1/ptm/m/it/10 msp_type: Overfull \hbox (147.8048pt too wide) in paragraph at lines 1722--1722 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (143.99501pt too wide) in paragraph at lines 1722--1722 \T1/ptm/m/it/10 = Overfull \hbox (164.35487pt too wide) in paragraph at lines 1722--1722 \T1/ptm/m/it/10 None\T1/pcr/m/n/10 ) [30] Overfull \hbox (19.6943pt too wide) in paragraph at lines 1770--1770 []\T1/ptm/m/it/10 schema_path_container\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1770--1770 \T1/ptm/m/it/10 killing_effect\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1770--1770 \T1/ptm/m/it/10 in-sec-ti- Underfull \hbox (badness 10000) in paragraph at lines 1770--1770 \T1/ptm/m/it/10 cide_name=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1770--1770 \T1/ptm/m/it/10 start_day=1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar- Underfull \hbox (badness 10000) in paragraph at lines 1770--1770 \T1/ptm/m/it/10 get_coverage=1.0\T1/ptm/m/n/10 , Overfull \hbox (41.63394pt too wide) in paragraph at lines 1770--1770 \T1/ptm/m/it/10 killing_predecay_duration=0\T1/ptm/m/n/10 , Overfull \hbox (10.33417pt too wide) in paragraph at lines 1770--1770 \T1/ptm/m/it/10 killing_decay_rate=0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1809--1809 \T1/ptm/m/it/10 = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 spray_coverage: Overfull \hbox (5.18481pt too wide) in paragraph at lines 1834--1834 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , Overfull \hbox (4.35448pt too wide) in paragraph at lines 1834--1834 \T1/ptm/m/it/10 start_day: Underfull \hbox (badness 10000) in paragraph at lines 1834--1834 \T1/ptm/m/it/10 file- Underfull \hbox (badness 10000) in paragraph at lines 1834--1834 \T1/ptm/m/it/10 name: Underfull \hbox (badness 10000) in paragraph at lines 1834--1834 [][]\T1/ptm/m/it/10 str[][] = [31] Underfull \hbox (badness 6893) in paragraph at lines 1851--1851 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day: [][]int[] [] = 0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1851--1851 \T1/ptm/m/it/10 spray_coverage: [][]float[][] = 1.0\T1/ptm/m/n/10 , Underfull \hbox (badness 7099) in paragraph at lines 1851--1851 \T1/ptm/m/it/10 ex-pi-ra-tion_constant: [][]int[][] = 100\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1898--1898 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , [32] Underfull \hbox (badness 10000) in paragraph at lines 1934--1938 []\T1/pcr/b/n/10 of individuals to target with the intervention. Default is Underfull \hbox (badness 10000) in paragraph at lines 1934--1938 \T1/ptm/m/n/10 (\T1/pcr/m/sl/10 properties\T1/ptm/m/n/10 ) ^^U \T1/pcr/m/n/10 [ { "trigger":"NewClinicalCase","coverage":0. Underfull \hbox (badness 10000) in paragraph at lines 1934--1938 \T1/pcr/m/n/10 8,"agemin":15,"agemax":70, "seek":0.4,"rate":0.3}, Underfull \hbox (badness 10000) in paragraph at lines 1934--1938 \T1/pcr/m/n/10 {"trigger":"NewSevereCase","coverage":0.8,"seek":0.6, Underfull \hbox (badness 10000) in paragraph at lines 1952--1954 []\T1/pcr/b/n/10 must have to receive the intervention. For example, Underfull \hbox (badness 10000) in paragraph at lines 1952--1954 \T1/ptm/m/n/10 (\T1/pcr/m/sl/10 individuals\T1/ptm/m/n/10 ) ^^U \T1/pcr/m/n/10 [{"IndividualProperty1":"PropertyValue1"}, Underfull \hbox (badness 10000) in paragraph at lines 1982--1982 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day: [][]int[][] = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 dis- Underfull \hbox (badness 10000) in paragraph at lines 1982--1982 \T1/ptm/m/it/10 0.0013698630136986301\T1/ptm/m/n/10 , \T1/ptm/m/it/10 killing_e ff: Underfull \hbox (badness 10000) in paragraph at lines 1982--1982 \T1/ptm/m/it/10 0.0006849315068493151\T1/ptm/m/n/10 , \T1/ptm/m/it/10 iv_name: Underfull \hbox (badness 10000) in paragraph at lines 1982--1982 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Us-ageDe-pen-de ntBed-net\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1982--1982 \T1/ptm/m/it/10 sonal_dependence: [][]dict[][] = None\T1/ptm/m/n/10 , [33] [34] [35] Underfull \hbox (badness 10000) in paragraph at lines 2180--2180 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2180--2180 \T1/ptm/m/it/10 start_day\T1/ptm/m/n/10 , \T1/ptm/m/it/10 file- Underfull \hbox (badness 10000) in paragraph at lines 2195--2195 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2195--2195 \T1/ptm/m/it/10 start_day: [][]int[][] = Underfull \hbox (badness 10000) in paragraph at lines 2195--2195 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 du-ra-tion_days: Underfull \hbox (badness 10000) in paragraph at lines 2195--2195 [][]\T1/ptm/m/it/10 int[][] = 365000\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2195--2195 \T1/ptm/m/it/10 clude_vector_state: Underfull \hbox (badness 10000) in paragraph at lines 2195--2195 [][]\T1/ptm/m/it/10 int[][] = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 strat- Underfull \hbox (badness 10000) in paragraph at lines 2195--2195 \T1/ptm/m/it/10 ify_by: [][]str[][] = Underfull \hbox (badness 10000) in paragraph at lines 2195--2195 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 GENOME\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ ptm/m/it/10 com- Overfull \hbox (9.02399pt too wide) in paragraph at lines 2195--2195 \T1/ptm/m/it/10 bine_similar_genomes: Underfull \hbox (badness 10000) in paragraph at lines 2195--2195 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 spe- Overfull \hbox (102.76315pt too wide) in paragraph at lines 2195--2195 \T1/ptm/m/it/10 cific_genome_combinations_for_stratification: Underfull \hbox (badness 10000) in paragraph at lines 2195--2195 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 al- Overfull \hbox (64.54318pt too wide) in paragraph at lines 2195--2195 \T1/ptm/m/it/10 lele_combinations_for_stratification: Overfull \hbox (2.32376pt too wide) in paragraph at lines 2195--2195 \T1/ptm/m/it/10 les_for_stratification: Underfull \hbox (badness 10000) in paragraph at lines 2195--2195 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- [36] [37] Underfull \hbox (badness 10000) in paragraph at lines 2275--2275 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2294--2294 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 6893) in paragraph at lines 2294--2294 \T1/ptm/m/it/10 = 365000\T1/ptm/m/n/10 , \T1/ptm/m/it/10 nodes: Underfull \hbox (badness 10000) in paragraph at lines 2294--2294 \T1/ptm/m/it/10 ual_property_filter: Underfull \hbox (badness 10000) in paragraph at lines 2294--2294 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , \T1/ptm/m/it/ 10 in-fec- Underfull \hbox (badness 10000) in paragraph at lines 2294--2294 \T1/ptm/m/it/10 tious-ness_bins: Underfull \hbox (badness 10000) in paragraph at lines 2294--2294 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Overfull \hbox (4.30418pt too wide) in paragraph at lines 2294--2294 \T1/ptm/m/it/10 max_number_reports: Underfull \hbox (badness 7291) in paragraph at lines 2294--2294 [][]\T1/ptm/m/it/10 int[][] = 100\T1/ptm/m/n/10 , \T1/ptm/m/it/10 par-a- Underfull \hbox (badness 10000) in paragraph at lines 2294--2294 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- [38] Underfull \hbox (badness 10000) in paragraph at lines 2355--2355 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i- Underfull \hbox (badness 10000) in paragraph at lines 2371--2371 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2371--2371 \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2371--2371 \T1/ptm/m/it/10 start_day: Underfull \hbox (badness 10000) in paragraph at lines 2371--2371 \T1/ptm/m/it/10 ra-tion_days: Underfull \hbox (badness 10000) in paragraph at lines 2371--2371 \T1/ptm/m/it/10 nodes: Overfull \hbox (3.20416pt too wide) in paragraph at lines 2371--2371 \T1/ptm/m/it/10 pretty_format: Overfull \hbox (15.2441pt too wide) in paragraph at lines 2371--2371 \T1/ptm/m/it/10 port_description: [39] Underfull \hbox (badness 10000) in paragraph at lines 2411--2411 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2411--2411 \T1/ptm/m/it/10 man- Underfull \hbox (badness 10000) in paragraph at lines 2411--2411 \T1/ptm/m/it/10 i-fest\T1/ptm/m/n/10 , Overfull \hbox (10.35448pt too wide) in paragraph at lines 2411--2411 \T1/ptm/m/it/10 start_day: Overfull \hbox (6.45485pt too wide) in paragraph at lines 2411--2411 \T1/ptm/m/it/10 end_day: Underfull \hbox (badness 10000) in paragraph at lines 2411--2411 [][]\T1/ptm/m/it/10 int[][] = Overfull \hbox (1.74501pt too wide) in paragraph at lines 2411--2411 \T1/ptm/m/it/10 365000\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2411--2411 \T1/ptm/m/it/10 re-port- Overfull \hbox (21.46431pt too wide) in paragraph at lines 2411--2411 \T1/ptm/m/it/10 ing_interval: Underfull \hbox (badness 10000) in paragraph at lines 2411--2411 [][]\T1/ptm/m/it/10 int[][] = Overfull \hbox (1.74501pt too wide) in paragraph at lines 2411--2411 \T1/ptm/m/it/10 365000\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2411--2411 \T1/ptm/m/it/10 nodes: Underfull \hbox (badness 10000) in paragraph at lines 2411--2411 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2411--2411 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2411--2411 \T1/ptm/m/it/10 re- Overfull \hbox (28.1245pt too wide) in paragraph at lines 2411--2411 \T1/ptm/m/it/10 port_filename: Underfull \hbox (badness 10000) in paragraph at lines 2411--2411 [][]\T1/ptm/m/it/10 str[][] = Underfull \hbox (badness 10000) in paragraph at lines 2411--2411 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Spa- Underfull \hbox (badness 10000) in paragraph at lines 2411--2411 \T1/ptm/m/it/10 tial-Re- Underfull \hbox (badness 10000) in paragraph at lines 2411--2411 \T1/ptm/m/it/10 port- Underfull \hbox (badness 10000) in paragraph at lines 2411--2411 \T1/ptm/m/it/10 Malar- Underfull \hbox (badness 10000) in paragraph at lines 2411--2411 \T1/ptm/m/it/10 i-aFil- Overfull \hbox (13.23434pt too wide) in paragraph at lines 2411--2411 \T1/ptm/m/it/10 tered.json\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2411--2411 \T1/ptm/m/it/10 spa- Overfull \hbox (56.87419pt too wide) in paragraph at lines 2411--2411 \T1/ptm/m/it/10 tial_output_channels: Underfull \hbox (badness 10000) in paragraph at lines 2411--2411 [][]\T1/ptm/m/it/10 list[][] = [40] Underfull \hbox (badness 10000) in paragraph at lines 2439--2447 \T1/ptm/m/n/10 ^^PBlood_Smear_Gametocyte_Prevalence^^Q, ^^PBlood_Smear_Parasite _Prevalence^^Q, Underfull \hbox (badness 10000) in paragraph at lines 2439--2447 \T1/ptm/m/n/10 ^^PCam-paign_Cost^^Q, ^^PDaily_Bites_Per_Human^^Q, ^^PDaily_EIR^ ^Q, ^^PDis-ease_Deaths^^Q, Underfull \hbox (badness 10000) in paragraph at lines 2439--2447 \T1/ptm/m/n/10 ^^PNew_Reported_Infections^^Q, ^^PNew_Severe_Cases^^Q, ^^PPCR_Ga metocyte_Prevalence^^Q, Underfull \hbox (badness 10000) in paragraph at lines 2439--2447 \T1/ptm/m/n/10 ^^PPCR_Parasite_Prevalence^^Q, ^^PPfHRP2_Prevalence^^Q, ^^PPop-u -la-tion^^Q, ^^PPreva- Underfull \hbox (badness 10000) in paragraph at lines 2439--2447 \T1/ptm/m/n/10 lence^^Q, ^^PRain-fall^^Q, ^^PRel-a-tive_Humidity^^Q, ^^PTrue_Pr evalence^^Q De-faults: Underfull \hbox (badness 10000) in paragraph at lines 2460--2460 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2460--2460 \T1/ptm/m/it/10 start_day: [][]int[][] = Underfull \hbox (badness 10000) in paragraph at lines 2460--2460 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 du-ra-tion_days: Underfull \hbox (badness 10000) in paragraph at lines 2460--2460 [][]\T1/ptm/m/it/10 int[][] = 365000\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2460--2460 \T1/ptm/m/it/10 event_trigger_list: Underfull \hbox (badness 6893) in paragraph at lines 2460--2460 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 nodes: Underfull \hbox (badness 10000) in paragraph at lines 2460--2460 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 2460--2460 \T1/ptm/m/it/10 port_description: Underfull \hbox (badness 10000) in paragraph at lines 2481--2481 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 end_day: Underfull \hbox (badness 10000) in paragraph at lines 2481--2481 [][]\T1/ptm/m/it/10 int[][] = 365000\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in- Underfull \hbox (badness 10000) in paragraph at lines 2481--2481 \T1/ptm/m/it/10 clude_infection_table: Underfull \hbox (badness 10000) in paragraph at lines 2481--2481 [][]\T1/ptm/m/it/10 int[][] = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in- [41] Underfull \hbox (badness 10000) in paragraph at lines 2543--2543 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 7168) in paragraph at lines 2543--2543 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 du-ra-tion_days: Underfull \hbox (badness 10000) in paragraph at lines 2543--2543 [][]\T1/ptm/m/it/10 int[][] = 365000\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2543--2543 \T1/ptm/m/it/10 re-port-ing_interval: Underfull \hbox (badness 10000) in paragraph at lines 2543--2543 [][]\T1/ptm/m/it/10 int[][] = 365000\T1/ptm/m/n/10 , Overfull \hbox (10.30418pt too wide) in paragraph at lines 2543--2543 \T1/ptm/m/it/10 max_number_reports: Underfull \hbox (badness 10000) in paragraph at lines 2543--2543 [][]\T1/ptm/m/it/10 int[][] = 365000\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2543--2543 \T1/ptm/m/it/10 nodes: [][]list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2543--2543 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 age_bins: Underfull \hbox (badness 10000) in paragraph at lines 2543--2543 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2543--2543 \T1/ptm/m/it/10 pretty_format: Underfull \hbox (badness 10000) in paragraph at lines 2543--2543 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 2543--2543 \T1/ptm/m/it/10 port_description: [42] Underfull \hbox (badness 10000) in paragraph at lines 2593--2593 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 7168) in paragraph at lines 2593--2593 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 du-ra-tion_days: Underfull \hbox (badness 10000) in paragraph at lines 2593--2593 [][]\T1/ptm/m/it/10 int[][] = 365000\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2593--2593 \T1/ptm/m/it/10 event_trigger_list: Underfull \hbox (badness 10000) in paragraph at lines 2593--2593 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Overfull \hbox (10.30418pt too wide) in paragraph at lines 2593--2593 \T1/ptm/m/it/10 max_number_reports: Underfull \hbox (badness 10000) in paragraph at lines 2593--2593 [][]\T1/ptm/m/it/10 int[][] = 365000\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2593--2593 \T1/ptm/m/it/10 nodes: [][]list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2593--2593 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in-di-vid- Overfull \hbox (20.78384pt too wide) in paragraph at lines 2593--2593 \T1/ptm/m/it/10 ual_property_to_collect: Underfull \hbox (badness 10000) in paragraph at lines 2593--2593 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2593--2593 \T1/ptm/m/it/10 pretty_format: Underfull \hbox (badness 10000) in paragraph at lines 2593--2593 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 2593--2593 \T1/ptm/m/it/10 port_description: [43] Underfull \hbox (badness 10000) in paragraph at lines 2694--2694 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2694--2694 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in-di-vid- Overfull \hbox (26.78384pt too wide) in paragraph at lines 2694--2694 \T1/ptm/m/it/10 ual_property_to_collect: Underfull \hbox (badness 6526) in paragraph at lines 2694--2694 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , \T1/ptm/m/it/ 10 strat- Underfull \hbox (badness 10000) in paragraph at lines 2694--2694 \T1/ptm/m/it/10 ify_by_gender: Overfull \hbox (47.85474pt too wide) in paragraph at lines 2728--2728 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , Overfull \hbox (49.79494pt too wide) in paragraph at lines 2728--2728 \T1/ptm/m/it/10 man- Overfull \hbox (35.35486pt too wide) in paragraph at lines 2728--2728 \T1/ptm/m/it/10 i- Overfull \hbox (45.63463pt too wide) in paragraph at lines 2728--2728 \T1/ptm/m/it/10 fest\T1/ptm/m/n/10 , Overfull \hbox (46.26491pt too wide) in paragraph at lines 2728--2728 \T1/ptm/m/it/10 bar- Overfull \hbox (55.34474pt too wide) in paragraph at lines 2728--2728 \T1/ptm/m/it/10 codes: Overfull \hbox (41.47458pt too wide) in paragraph at lines 2728--2728 [][]\T1/ptm/m/it/10 list[][] Overfull \hbox (35.99501pt too wide) in paragraph at lines 2728--2728 \T1/ptm/m/it/10 = Overfull \hbox (52.85487pt too wide) in paragraph at lines 2728--2728 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (122.7736pt too wide) in paragraph at lines 2728--2728 \T1/ptm/m/it/10 drug_resistant_strings: Overfull \hbox (41.47458pt too wide) in paragraph at lines 2728--2728 [][]\T1/ptm/m/it/10 list[][] Overfull \hbox (35.99501pt too wide) in paragraph at lines 2728--2728 \T1/ptm/m/it/10 = Overfull \hbox (52.85487pt too wide) in paragraph at lines 2728--2728 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (131.6536pt too wide) in paragraph at lines 2728--2728 \T1/ptm/m/it/10 drug_resistant_stat_type: Overfull \hbox (39.80469pt too wide) in paragraph at lines 2728--2728 [][]\T1/ptm/m/it/10 str[][] Overfull \hbox (35.99501pt too wide) in paragraph at lines 2728--2728 \T1/ptm/m/it/10 = Overfull \hbox (240.52356pt too wide) in paragraph at lines 2728--2728 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 NUM_PEOPLE_WITH_RESISTANT_INFECTION\TS1/ptm/m /it/10 '\T1/ptm/m/n/10 , Overfull \hbox (68.48471pt too wide) in paragraph at lines 2728--2728 \T1/ptm/m/it/10 age_bins: Overfull \hbox (41.47458pt too wide) in paragraph at lines 2728--2728 [][]\T1/ptm/m/it/10 list[][] Overfull \hbox (35.99501pt too wide) in paragraph at lines 2728--2728 \T1/ptm/m/it/10 = Overfull \hbox (52.85487pt too wide) in paragraph at lines 2728--2728 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (40.35486pt too wide) in paragraph at lines 2728--2728 \T1/ptm/m/it/10 in- Overfull \hbox (40.35486pt too wide) in paragraph at lines 2728--2728 \T1/ptm/m/it/10 di- Overfull \hbox (44.7948pt too wide) in paragraph at lines 2728--2728 \T1/ptm/m/it/10 vid- Overfull \hbox (128.78384pt too wide) in paragraph at lines 2728--2728 \T1/ptm/m/it/10 ual_property_to_collect: Overfull \hbox (39.80469pt too wide) in paragraph at lines 2728--2728 [][]\T1/ptm/m/it/10 str[][] Overfull \hbox (35.99501pt too wide) in paragraph at lines 2728--2728 \T1/ptm/m/it/10 = Overfull \hbox (36.0248pt too wide) in paragraph at lines 2728--2728 \TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , Overfull \hbox (50.76463pt too wide) in paragraph at lines 2728--2728 \T1/ptm/m/it/10 strat- Overfull \hbox (89.68442pt too wide) in paragraph at lines 2728--2728 \T1/ptm/m/it/10 ify_by_gender: Overfull \hbox (39.8048pt too wide) in paragraph at lines 2728--2728 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (35.99501pt too wide) in paragraph at lines 2728--2728 \T1/ptm/m/it/10 = Overfull \hbox (40.24501pt too wide) in paragraph at lines 2728--2728 \T1/ptm/m/it/10 1\T1/pcr/m/n/10 ) [44] [45] Underfull \hbox (badness 10000) in paragraph at lines 2779--2779 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Overfull \hbox (17.85474pt too wide) in paragraph at lines 2808--2808 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , Overfull \hbox (19.79494pt too wide) in paragraph at lines 2808--2808 \T1/ptm/m/it/10 man- Overfull \hbox (5.35486pt too wide) in paragraph at lines 2808--2808 \T1/ptm/m/it/10 i- Overfull \hbox (15.63463pt too wide) in paragraph at lines 2808--2808 \T1/ptm/m/it/10 fest\T1/ptm/m/n/10 , Overfull \hbox (48.68404pt too wide) in paragraph at lines 2808--2808 \T1/ptm/m/it/10 species_list: Overfull \hbox (11.47458pt too wide) in paragraph at lines 2808--2808 [][]\T1/ptm/m/it/10 list[][] Overfull \hbox (5.99501pt too wide) in paragraph at lines 2808--2808 \T1/ptm/m/it/10 = Overfull \hbox (22.85487pt too wide) in paragraph at lines 2808--2808 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (20.76463pt too wide) in paragraph at lines 2808--2808 \T1/ptm/m/it/10 strat- Overfull \hbox (60.89413pt too wide) in paragraph at lines 2808--2808 \T1/ptm/m/it/10 ify_by_species: Overfull \hbox (9.8048pt too wide) in paragraph at lines 2808--2808 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (5.99501pt too wide) in paragraph at lines 2808--2808 \T1/ptm/m/it/10 = Overfull \hbox (6.74501pt too wide) in paragraph at lines 2808--2808 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , Overfull \hbox (10.35486pt too wide) in paragraph at lines 2808--2808 \T1/ptm/m/it/10 in- Overfull \hbox (70.75449pt too wide) in paragraph at lines 2808--2808 \T1/ptm/m/it/10 clude_wolbachia: Overfull \hbox (9.8048pt too wide) in paragraph at lines 2808--2808 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (5.99501pt too wide) in paragraph at lines 2808--2808 \T1/ptm/m/it/10 = Overfull \hbox (6.74501pt too wide) in paragraph at lines 2808--2808 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , Overfull \hbox (10.35486pt too wide) in paragraph at lines 2808--2808 \T1/ptm/m/it/10 in- Overfull \hbox (65.80426pt too wide) in paragraph at lines 2808--2808 \T1/ptm/m/it/10 clude_gestation: Overfull \hbox (9.8048pt too wide) in paragraph at lines 2808--2808 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (5.99501pt too wide) in paragraph at lines 2808--2808 \T1/ptm/m/it/10 = Overfull \hbox (6.74501pt too wide) in paragraph at lines 2808--2808 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , Overfull \hbox (16.26491pt too wide) in paragraph at lines 2808--2808 \T1/ptm/m/it/10 bar- Overfull \hbox (25.34474pt too wide) in paragraph at lines 2808--2808 \T1/ptm/m/it/10 codes: Overfull \hbox (11.47458pt too wide) in paragraph at lines 2808--2808 [][]\T1/ptm/m/it/10 list[][] Overfull \hbox (5.99501pt too wide) in paragraph at lines 2808--2808 \T1/ptm/m/it/10 = Overfull \hbox (26.35487pt too wide) in paragraph at lines 2808--2808 \T1/ptm/m/it/10 None\T1/pcr/m/n/10 ) [46] Underfull \hbox (badness 10000) in paragraph at lines 2848--2848 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pa-ram-e-ters: Underfull \hbox (badness 10000) in paragraph at lines 2848--2848 \T1/ptm/m/it/10 dict = \T1/ptm/m/n/10 , Underfull \hbox (badness 6348) in paragraph at lines 2848--2848 \T1/ptm/m/it/10 En-abled: bool = Underfull \hbox (badness 10000) in paragraph at lines 2896--2896 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pa-ram-e-ters: Underfull \hbox (badness 10000) in paragraph at lines 2896--2896 \T1/ptm/m/it/10 dict = \T1/ptm/m/n/10 , Underfull \hbox (badness 6348) in paragraph at lines 2896--2896 \T1/ptm/m/it/10 En-abled: bool = [47] Underfull \hbox (badness 10000) in paragraph at lines 2920--2920 []\T1/ptm/m/it/10 class_name: Underfull \hbox (badness 10000) in paragraph at lines 2920--2920 \T1/ptm/m/it/10 = \T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2920--2920 \T1/ptm/m/it/10 En-abled: Overfull \hbox (0.5943pt too wide) in paragraph at lines 2920--2920 \T1/ptm/m/it/10 Pretty_Format: Overfull \hbox (55.2345pt too wide) in paragraph at lines 2945--2945 []\T1/ptm/m/it/10 class_name: Overfull \hbox (15.80469pt too wide) in paragraph at lines 2945--2945 \T1/ptm/m/it/10 str Overfull \hbox (11.99501pt too wide) in paragraph at lines 2945--2945 \T1/ptm/m/it/10 = Overfull \hbox (28.85487pt too wide) in paragraph at lines 2945--2945 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (18.57497pt too wide) in paragraph at lines 2945--2945 \T1/ptm/m/it/10 pa- Overfull \hbox (24.53493pt too wide) in paragraph at lines 2945--2945 \T1/ptm/m/it/10 ram- Overfull \hbox (13.01491pt too wide) in paragraph at lines 2945--2945 \T1/ptm/m/it/10 e- Overfull \hbox (23.4746pt too wide) in paragraph at lines 2945--2945 \T1/ptm/m/it/10 ters: Overfull \hbox (20.24474pt too wide) in paragraph at lines 2945--2945 \T1/ptm/m/it/10 dict Overfull \hbox (11.99501pt too wide) in paragraph at lines 2945--2945 \T1/ptm/m/it/10 = Overfull \hbox (27.5448pt too wide) in paragraph at lines 2945--2945 \T1/ptm/m/it/10 \T1/ptm/m/n/10 , Overfull \hbox (19.68495pt too wide) in paragraph at lines 2945--2945 \T1/ptm/m/it/10 En- Overfull \hbox (30.7948pt too wide) in paragraph at lines 2945--2945 \T1/ptm/m/it/10 abled: Overfull \hbox (23.0249pt too wide) in paragraph at lines 2945--2945 \T1/ptm/m/it/10 bool Overfull \hbox (11.99501pt too wide) in paragraph at lines 2945--2945 \T1/ptm/m/it/10 = Overfull \hbox (26.08485pt too wide) in paragraph at lines 2945--2945 \T1/ptm/m/it/10 True\T1/ptm/m/n/10 , Overfull \hbox (66.5943pt too wide) in paragraph at lines 2945--2945 \T1/ptm/m/it/10 Pretty_Format: Overfull \hbox (23.0249pt too wide) in paragraph at lines 2945--2945 \T1/ptm/m/it/10 bool Overfull \hbox (11.99501pt too wide) in paragraph at lines 2945--2945 \T1/ptm/m/it/10 = Overfull \hbox (29.58485pt too wide) in paragraph at lines 2945--2945 \T1/ptm/m/it/10 True\T1/pcr/m/n/10 ) Underfull \hbox (badness 5832) in paragraph at lines 2948--2953 \T1/ptm/m/n/10 The re-port can only be used when the sim-u-la-tion setup pa-ram -e-ter \T1/ptm/b/n/10 Malaria_Model \T1/ptm/m/n/10 is set to Overfull \hbox (13.2345pt too wide) in paragraph at lines 2970--2970 []\T1/ptm/m/it/10 class_name: Underfull \hbox (badness 10000) in paragraph at lines 2970--2970 \T1/ptm/m/it/10 str = Underfull \hbox (badness 10000) in paragraph at lines 2970--2970 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2970--2970 \T1/ptm/m/it/10 pa-ram-e- Underfull \hbox (badness 10000) in paragraph at lines 2970--2970 \T1/ptm/m/it/10 tory>\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2970--2970 \T1/ptm/m/it/10 En-abled: Underfull \hbox (badness 10000) in paragraph at lines 2970--2970 \T1/ptm/m/it/10 bool Underfull \hbox (badness 10000) in paragraph at lines 2970--2970 \T1/ptm/m/it/10 = True\T1/ptm/m/n/10 , Overfull \hbox (24.5943pt too wide) in paragraph at lines 2970--2970 \T1/ptm/m/it/10 Pretty_Format: Underfull \hbox (badness 10000) in paragraph at lines 2970--2970 \T1/ptm/m/it/10 bool = [48] Underfull \hbox (badness 10000) in paragraph at lines 2995--2995 []\T1/ptm/m/it/10 class_name: str = Underfull \hbox (badness 10000) in paragraph at lines 2995--2995 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pa-ram-e-ters: Underfull \hbox (badness 6236) in paragraph at lines 3043--3043 []\T1/ptm/m/it/10 class_name: str = Underfull \hbox (badness 10000) in paragraph at lines 3043--3043 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pa-ram-e-ters: Underfull \hbox (badness 10000) in paragraph at lines 3043--3043 \T1/ptm/m/it/10 dict = \T1/ptm/m/n/10 , [49] Underfull \hbox (badness 10000) in paragraph at lines 3067--3067 []\T1/ptm/m/it/10 class_name: str Underfull \hbox (badness 7291) in paragraph at lines 3067--3067 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pa-ram- Underfull \hbox (badness 10000) in paragraph at lines 3067--3067 \T1/ptm/m/it/10 e-ters: dict = Underfull \hbox (badness 10000) in paragraph at lines 3067--3067 \T1/ptm/m/it/10 \T1/ptm/m/n/10 , \T1/ptm/m/it/10 En- Underfull \hbox (badness 10000) in paragraph at lines 3067--3067 \T1/ptm/m/it/10 Pretty_Format: Underfull \hbox (badness 10000) in paragraph at lines 3096--3096 []\T1/ptm/m/it/10 class_name: Underfull \hbox (badness 10000) in paragraph at lines 3096--3096 \T1/ptm/m/it/10 pa-ram-e- Underfull \hbox (badness 10000) in paragraph at lines 3096--3096 \T1/ptm/m/it/10 \T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3096--3096 \T1/ptm/m/it/10 En-abled: Overfull \hbox (6.5943pt too wide) in paragraph at lines 3096--3096 \T1/ptm/m/it/10 Pretty_Format: Overfull \hbox (13.2345pt too wide) in paragraph at lines 3140--3140 []\T1/ptm/m/it/10 class_name: Underfull \hbox (badness 10000) in paragraph at lines 3140--3140 \T1/ptm/m/it/10 str = Underfull \hbox (badness 10000) in paragraph at lines 3140--3140 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3140--3140 \T1/ptm/m/it/10 pa-ram-e- Underfull \hbox (badness 10000) in paragraph at lines 3140--3140 \T1/ptm/m/it/10 tory>\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3140--3140 \T1/ptm/m/it/10 En-abled: Underfull \hbox (badness 10000) in paragraph at lines 3140--3140 \T1/ptm/m/it/10 bool Underfull \hbox (badness 10000) in paragraph at lines 3140--3140 \T1/ptm/m/it/10 = True\T1/ptm/m/n/10 , Overfull \hbox (24.5943pt too wide) in paragraph at lines 3140--3140 \T1/ptm/m/it/10 Pretty_Format: Underfull \hbox (badness 10000) in paragraph at lines 3140--3140 \T1/ptm/m/it/10 bool = [50] Underfull \hbox (badness 10000) in paragraph at lines 3164--3164 []\T1/ptm/m/it/10 class_name: Underfull \hbox (badness 10000) in paragraph at lines 3164--3164 \T1/ptm/m/it/10 str = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3164--3164 \T1/ptm/m/it/10 pa-ram-e-ters: Underfull \hbox (badness 10000) in paragraph at lines 3164--3164 \T1/ptm/m/it/10 dict = \T1/ptm/m/n/10 , \T1/ptm/m/it/10 En-abled: Underfull \hbox (badness 10000) in paragraph at lines 3164--3164 \T1/ptm/m/it/10 bool = True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3164--3164 \T1/ptm/m/it/10 Pretty_Format: Overfull \hbox (67.2345pt too wide) in paragraph at lines 3187--3187 []\T1/ptm/m/it/10 class_name: Overfull \hbox (27.80469pt too wide) in paragraph at lines 3187--3187 \T1/ptm/m/it/10 str Overfull \hbox (23.99501pt too wide) in paragraph at lines 3187--3187 \T1/ptm/m/it/10 = Overfull \hbox (40.85487pt too wide) in paragraph at lines 3187--3187 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (30.57497pt too wide) in paragraph at lines 3187--3187 \T1/ptm/m/it/10 pa- Overfull \hbox (36.53493pt too wide) in paragraph at lines 3187--3187 \T1/ptm/m/it/10 ram- Overfull \hbox (25.01491pt too wide) in paragraph at lines 3187--3187 \T1/ptm/m/it/10 e- Overfull \hbox (35.4746pt too wide) in paragraph at lines 3187--3187 \T1/ptm/m/it/10 ters: Overfull \hbox (32.24474pt too wide) in paragraph at lines 3187--3187 \T1/ptm/m/it/10 dict Overfull \hbox (23.99501pt too wide) in paragraph at lines 3187--3187 \T1/ptm/m/it/10 = Overfull \hbox (39.5448pt too wide) in paragraph at lines 3187--3187 \T1/ptm/m/it/10 \T1/ptm/m/n/10 , Overfull \hbox (31.68495pt too wide) in paragraph at lines 3187--3187 \T1/ptm/m/it/10 En- Overfull \hbox (42.7948pt too wide) in paragraph at lines 3187--3187 \T1/ptm/m/it/10 abled: Overfull \hbox (35.0249pt too wide) in paragraph at lines 3187--3187 \T1/ptm/m/it/10 bool Overfull \hbox (23.99501pt too wide) in paragraph at lines 3187--3187 \T1/ptm/m/it/10 = Overfull \hbox (38.08485pt too wide) in paragraph at lines 3187--3187 \T1/ptm/m/it/10 True\T1/ptm/m/n/10 , Overfull \hbox (78.5943pt too wide) in paragraph at lines 3187--3187 \T1/ptm/m/it/10 Pretty_Format: Overfull \hbox (35.0249pt too wide) in paragraph at lines 3187--3187 \T1/ptm/m/it/10 bool Overfull \hbox (23.99501pt too wide) in paragraph at lines 3187--3187 \T1/ptm/m/it/10 = Overfull \hbox (41.58485pt too wide) in paragraph at lines 3187--3187 \T1/ptm/m/it/10 True\T1/pcr/m/n/10 ) [51] Underfull \hbox (badness 10000) in paragraph at lines 3215--3215 []\T1/ptm/m/it/10 class_name: str Underfull \hbox (badness 7291) in paragraph at lines 3215--3215 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pa-ram- Underfull \hbox (badness 10000) in paragraph at lines 3215--3215 \T1/ptm/m/it/10 e-ters: dict = Underfull \hbox (badness 10000) in paragraph at lines 3215--3215 \T1/ptm/m/it/10 \T1/ptm/m/n/10 , \T1/ptm/m/it/10 En- Underfull \hbox (badness 10000) in paragraph at lines 3215--3215 \T1/ptm/m/it/10 Pretty_Format: Overfull \hbox (37.2345pt too wide) in paragraph at lines 3239--3239 []\T1/ptm/m/it/10 class_name: Underfull \hbox (badness 10000) in paragraph at lines 3239--3239 \T1/ptm/m/it/10 str Underfull \hbox (badness 10000) in paragraph at lines 3239--3239 \T1/ptm/m/it/10 = Overfull \hbox (10.85487pt too wide) in paragraph at lines 3239--3239 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (0.57497pt too wide) in paragraph at lines 3239--3239 \T1/ptm/m/it/10 pa- Overfull \hbox (6.53493pt too wide) in paragraph at lines 3239--3239 \T1/ptm/m/it/10 ram- Underfull \hbox (badness 10000) in paragraph at lines 3239--3239 \T1/ptm/m/it/10 e- Overfull \hbox (5.4746pt too wide) in paragraph at lines 3239--3239 \T1/ptm/m/it/10 ters: Overfull \hbox (2.24474pt too wide) in paragraph at lines 3239--3239 \T1/ptm/m/it/10 dict Underfull \hbox (badness 10000) in paragraph at lines 3239--3239 \T1/ptm/m/it/10 = Overfull \hbox (9.5448pt too wide) in paragraph at lines 3239--3239 \T1/ptm/m/it/10 \T1/ptm/m/n/10 , Overfull \hbox (1.68495pt too wide) in paragraph at lines 3239--3239 \T1/ptm/m/it/10 En- Overfull \hbox (12.7948pt too wide) in paragraph at lines 3239--3239 \T1/ptm/m/it/10 abled: Overfull \hbox (5.0249pt too wide) in paragraph at lines 3239--3239 \T1/ptm/m/it/10 bool Underfull \hbox (badness 10000) in paragraph at lines 3239--3239 \T1/ptm/m/it/10 = Overfull \hbox (8.08485pt too wide) in paragraph at lines 3239--3239 \T1/ptm/m/it/10 True\T1/ptm/m/n/10 , Overfull \hbox (48.5943pt too wide) in paragraph at lines 3239--3239 \T1/ptm/m/it/10 Pretty_Format: Overfull \hbox (5.0249pt too wide) in paragraph at lines 3239--3239 \T1/ptm/m/it/10 bool Underfull \hbox (badness 10000) in paragraph at lines 3239--3239 \T1/ptm/m/it/10 = Overfull \hbox (11.58485pt too wide) in paragraph at lines 3239--3239 \T1/ptm/m/it/10 True\T1/pcr/m/n/10 ) [52] Underfull \hbox (badness 10000) in paragraph at lines 3292--3292 []\T1/ptm/m/it/10 config\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/ 10 , Overfull \hbox (24.52415pt too wide) in paragraph at lines 3292--3292 \T1/ptm/m/it/10 var_gene_randomness_type: Underfull \hbox (badness 10000) in paragraph at lines 3292--3292 [][]\T1/ptm/m/it/10 str[][] = Underfull \hbox (badness 10000) in paragraph at lines 3293--3295 \T1/ptm/m/n/10 Sets up the de-fault pa-ram-e-ters for par-a-site ge-net-ics sim -u-la-tions Malaria_Model = [53] [54] [55] [56] Underfull \hbox (badness 10000) in paragraph at lines 3667--3667 []\T1/ptm/m/it/10 config\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/ 10 , \T1/ptm/m/it/10 in-sec- Underfull \hbox (badness 6675) in paragraph at lines 3667--3667 \T1/ptm/m/it/10 ti-cide_name: [][]str[][] = \TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , Underfull \hbox (badness 5939) in paragraph at lines 3667--3667 \T1/ptm/m/it/10 species: [][]str[][] = \TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , \T1/ ptm/m/it/10 al- Underfull \hbox (badness 6047) in paragraph at lines 3667--3667 \T1/ptm/m/it/10 block-ing: [][]float[][] = 1.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3667--3667 \T1/ptm/m/it/10 pelling: [][]float[][] = 1.0\T1/ptm/m/n/10 , [57] [58] [59] [60] Overfull \hbox (54.6225pt too wide) in paragraph at lines 3837--3838 []\T1/pcr/m/n/10 emodpy_malaria.demographics.MalariaDemographics\T1/ptm/m/n/10 , Overfull \hbox (12.6225pt too wide) in paragraph at lines 3841--3842 []\T1/pcr/m/n/10 emodpy_malaria.interventions.diag_survey\T1/ptm/m/n/10 , Overfull \hbox (24.6225pt too wide) in paragraph at lines 3843--3844 []\T1/pcr/m/n/10 emodpy_malaria.interventions.drug_campaign\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3844--3845 []\T1/pcr/m/n/10 emodpy_malaria.interventions.inputeir\T1/ptm/m/n/10 , Overfull \hbox (6.6225pt too wide) in paragraph at lines 3846--3847 []\T1/pcr/m/n/10 emodpy_malaria.interventions.ivermectin\T1/ptm/m/n/10 , Overfull \hbox (36.6225pt too wide) in paragraph at lines 3847--3848 []\T1/pcr/m/n/10 emodpy_malaria.interventions.mosquitorelease\T1/ptm/m/n/10 , Overfull \hbox (144.6225pt too wide) in paragraph at lines 3848--3849 []\T1/pcr/m/n/10 emodpy_malaria.interventions.outbreakindividualmalariagenetics \T1/ptm/m/n/10 , Overfull \hbox (144.6225pt too wide) in paragraph at lines 3849--3850 []\T1/pcr/m/n/10 emodpy_malaria.interventions.outbreakindividualmalariavargenes \T1/ptm/m/n/10 , Overfull \hbox (36.6225pt too wide) in paragraph at lines 3850--3851 []\T1/pcr/m/n/10 emodpy_malaria.interventions.outdoorrestkill\T1/ptm/m/n/10 , Overfull \hbox (24.6225pt too wide) in paragraph at lines 3851--3852 []\T1/pcr/m/n/10 emodpy_malaria.interventions.spacespraying\T1/ptm/m/n/10 , Overfull \hbox (0.6225pt too wide) in paragraph at lines 3852--3853 []\T1/pcr/m/n/10 emodpy_malaria.interventions.sugartrap\T1/ptm/m/n/10 , Overfull \hbox (48.6225pt too wide) in paragraph at lines 3853--3854 []\T1/pcr/m/n/10 emodpy_malaria.interventions.treatment_seeking\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3854--3855 []\T1/pcr/m/n/10 emodpy_malaria.interventions.udbednet\T1/ptm/m/n/10 , [61] (./institute-for-disease-modeling-emodpy-malaria.ind [62] Overfull \hbox (50.13988pt too wide) in paragraph at lines 8--10 []\T1/pcr/m/n/10 add() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule emodpy_malari a.interventions.treatment_seeking\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 10--12 []\T1/pcr/m/n/10 add_alleles() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 12--14 []\T1/pcr/m/n/10 add_diagnostic_survey() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod -ule Underfull \hbox (badness 10000) in paragraph at lines 12--14 \T1/ptm/m/it/10 emodpy_malaria.interventions.diag_survey\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 14--16 []\T1/pcr/m/n/10 add_drug_campaign() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (4.27083pt too wide) in paragraph at lines 14--16 \T1/ptm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 16--18 []\T1/pcr/m/n/10 add_drug_resistance() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 18--20 []\T1/pcr/m/n/10 add_drug_status_report() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 20--22 []\T1/pcr/m/n/10 add_fMDA() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (4.27083pt too wide) in paragraph at lines 20--22 \T1/ptm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 24--26 []\T1/pcr/m/n/10 add_insecticide_resistance() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 i n mod-ule Underfull \hbox (badness 10000) in paragraph at lines 26--28 []\T1/pcr/m/n/10 add_insecticide_resistance() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 i n mod-ule Underfull \hbox (badness 10000) in paragraph at lines 30--32 []\T1/pcr/m/n/10 add_malaria_patient_json_report() \T1/ptm/m/n/10 (\T1/ptm/m/it /10 in Underfull \hbox (badness 10000) in paragraph at lines 32--34 []\T1/pcr/m/n/10 add_malaria_sql_report() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 34--36 []\T1/pcr/m/n/10 add_malaria_summary_report() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 i n mod-ule Underfull \hbox (badness 10000) in paragraph at lines 38--40 []\T1/pcr/m/n/10 add_malaria_transmission_report() \T1/ptm/m/n/10 (\T1/ptm/m/it /10 in Underfull \hbox (badness 10000) in paragraph at lines 40--42 []\T1/pcr/m/n/10 add_MDA() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (4.27083pt too wide) in paragraph at lines 40--42 \T1/ptm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 42--44 []\T1/pcr/m/n/10 add_MSAT() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (4.27083pt too wide) in paragraph at lines 42--44 \T1/ptm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 44--46 []\T1/pcr/m/n/10 add_mutation() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 46--48 []\T1/pcr/m/n/10 add_report_event_counter() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (52.1225pt too wide) in paragraph at lines 50--52 []\T1/pcr/m/n/10 add_report_node_demographics_malaria_genetics() Underfull \hbox (badness 10000) in paragraph at lines 52--54 []\T1/pcr/m/n/10 add_report_vector_genetics() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 i n mod-ule Underfull \hbox (badness 10000) in paragraph at lines 56--58 []\T1/pcr/m/n/10 add_report_vector_stats() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in m od-ule Overfull \hbox (22.1225pt too wide) in paragraph at lines 58--60 []\T1/pcr/m/n/10 add_report_vector_stats_malaria_genetics() Underfull \hbox (badness 10000) in paragraph at lines 60--62 []\T1/pcr/m/n/10 add_rfMDA() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (4.27083pt too wide) in paragraph at lines 60--62 \T1/ptm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 62--64 []\T1/pcr/m/n/10 add_rfMSAT() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (4.27083pt too wide) in paragraph at lines 62--64 \T1/ptm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 64--66 []\T1/pcr/m/n/10 add_spatial_report_malaria_filtered() Underfull \hbox (badness 10000) in paragraph at lines 66--68 []\T1/pcr/m/n/10 add_species() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 68--70 []\T1/pcr/m/n/10 add_species() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 70--72 []\T1/pcr/m/n/10 add_species_drivers() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 72--73 []\T1/pcr/m/n/10 add_trait() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 73--75 []\T1/pcr/m/n/10 add_vector_habitat_report() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 75--77 []\T1/pcr/m/n/10 AntimalarialDrug() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 75--77 \T1/ptm/m/it/10 emodpy_malaria.interventions.common\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 77--79 []\T1/pcr/m/n/10 AntimalarialDrug() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 82--84 []\T1/pcr/m/n/10 BasicBednet() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule [63] Underfull \hbox (badness 10000) in paragraph at lines 84--86 []\T1/pcr/m/n/10 Bednet() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (59.0599pt too wide) in paragraph at lines 89--91 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.MalariaImmunityReport Overfull \hbox (72.70978pt too wide) in paragraph at lines 91--93 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.MalariaPatientJSONReport Overfull \hbox (34.07018pt too wide) in paragraph at lines 93--95 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.MalariaSqlReport Overfull \hbox (59.06006pt too wide) in paragraph at lines 95--97 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.MalariaSummaryReport Overfull \hbox (79.58981pt too wide) in paragraph at lines 97--99 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.MalariaSurveyJSONAnalyzer Overfull \hbox (34.07019pt too wide) in paragraph at lines 99--101 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.ReportDrugStatus Overfull \hbox (44.06006pt too wide) in paragraph at lines 101--103 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.ReportEventCounter Overfull \hbox (93.57004pt too wide) in paragraph at lines 103--105 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.ReportHumanMigrationTracking Overfull \hbox (68.25012pt too wide) in paragraph at lines 105--107 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.ReportNodeDemographics Overfull \hbox (136.01923pt too wide) in paragraph at lines 107--109 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.ReportNodeDemographicsMalariaGenetics Overfull \hbox (125.03925pt too wide) in paragraph at lines 109--111 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.ReportSimpleMalariaTransmissionJSON Overfull \hbox (49.04977pt too wide) in paragraph at lines 111--113 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.ReportVectorGenetics Overfull \hbox (54.46992pt too wide) in paragraph at lines 113--115 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.ReportVectorMigration Overfull \hbox (33.50998pt too wide) in paragraph at lines 115--117 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.ReportVectorStats Overfull \hbox (101.27908pt too wide) in paragraph at lines 117--119 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.ReportVectorStatsMalariaGenetics Overfull \hbox (81.02942pt too wide) in paragraph at lines 119--121 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.SpatialReportMalariaFiltered Overfull \hbox (44.61995pt too wide) in paragraph at lines 121--123 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.VectorHabitatReport Underfull \hbox (badness 10000) in paragraph at lines 126--128 []\T1/pcr/m/n/10 drug_configs_from_code() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule Overfull \hbox (4.27083pt too wide) in paragraph at lines 126--128 \T1/ptm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/ptm/m/n/10 ), Overfull \hbox (52.1225pt too wide) in paragraph at lines 135--136 []\T1/pcr/m/n/10 emodpy_malaria.demographics.MalariaDemographics Overfull \hbox (10.1225pt too wide) in paragraph at lines 143--144 []\T1/pcr/m/n/10 emodpy_malaria.interventions.diag_survey Overfull \hbox (22.1225pt too wide) in paragraph at lines 147--148 []\T1/pcr/m/n/10 emodpy_malaria.interventions.drug_campaign Overfull \hbox (4.1225pt too wide) in paragraph at lines 153--154 []\T1/pcr/m/n/10 emodpy_malaria.interventions.ivermectin Overfull \hbox (34.1225pt too wide) in paragraph at lines 155--156 []\T1/pcr/m/n/10 emodpy_malaria.interventions.mosquitorelease Overfull \hbox (142.1225pt too wide) in paragraph at lines 157--158 []\T1/pcr/m/n/10 emodpy_malaria.interventions.outbreakindividualmalariagenetics Overfull \hbox (142.1225pt too wide) in paragraph at lines 159--160 []\T1/pcr/m/n/10 emodpy_malaria.interventions.outbreakindividualmalariavargenes Overfull \hbox (34.1225pt too wide) in paragraph at lines 161--162 []\T1/pcr/m/n/10 emodpy_malaria.interventions.outdoorrestkill Overfull \hbox (22.1225pt too wide) in paragraph at lines 163--164 []\T1/pcr/m/n/10 emodpy_malaria.interventions.spacespraying Overfull \hbox (46.1225pt too wide) in paragraph at lines 167--168 []\T1/pcr/m/n/10 emodpy_malaria.interventions.treatment_seeking Underfull \hbox (badness 10000) in paragraph at lines 182--184 []\T1/pcr/m/n/10 fmda_cfg() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (4.27083pt too wide) in paragraph at lines 182--184 \T1/ptm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 184--186 []\T1/pcr/m/n/10 from_params() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (36.54083pt too wide) in paragraph at lines 184--186 \T1/ptm/m/it/10 emodpy_malaria.demographics.MalariaDemographics\T1/ptm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 186--188 []\T1/pcr/m/n/10 from_pop_csv() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (36.54083pt too wide) in paragraph at lines 186--188 \T1/ptm/m/it/10 emodpy_malaria.demographics.MalariaDemographics\T1/ptm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 188--190 []\T1/pcr/m/n/10 from_template_node() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ul e Overfull \hbox (36.54083pt too wide) in paragraph at lines 188--190 \T1/ptm/m/it/10 emodpy_malaria.demographics.MalariaDemographics\T1/ptm/m/n/10 ) , [64] Underfull \hbox (badness 10000) in paragraph at lines 193--195 []\T1/pcr/m/n/10 get_drug_params() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 195--197 []\T1/pcr/m/n/10 get_file_from_http() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 197--199 []\T1/pcr/m/n/10 get_species_params() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 202--204 []\T1/pcr/m/n/10 InputEIR() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 202--204 \T1/ptm/m/it/10 emodpy_malaria.interventions.inputeir\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 204--206 []\T1/pcr/m/n/10 IRSHousingModification() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 206--208 []\T1/pcr/m/n/10 Ivermectin() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 206--208 \T1/ptm/m/it/10 emodpy_malaria.interventions.ivermectin\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 211--213 []\T1/pcr/m/n/10 MalariaDemographics \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Overfull \hbox (36.54083pt too wide) in paragraph at lines 211--213 \T1/ptm/m/it/10 emodpy_malaria.demographics.MalariaDemographics\T1/ptm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 213--215 []\T1/pcr/m/n/10 MalariaDiagnostic() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 213--215 \T1/ptm/m/it/10 emodpy_malaria.interventions.common\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 215--217 []\T1/pcr/m/n/10 MalariaImmunityReport \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 217--219 []\T1/pcr/m/n/10 MalariaPatientJSONReport \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 219--221 []\T1/pcr/m/n/10 MalariaSqlReport \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 221--223 []\T1/pcr/m/n/10 MalariaSummaryReport \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 223--225 []\T1/pcr/m/n/10 MalariaSurveyJSONAnalyzer \T1/ptm/m/n/10 (\T1/ptm/m/it/10 clas s in Overfull \hbox (74.6225pt too wide) in paragraph at lines 228--229 []| \T1/pcr/m/n/10 emodpy_malaria.demographics.MalariaDemographics\T1/ptm/m/n/1 0 , Overfull \hbox (2.6225pt too wide) in paragraph at lines 230--231 []| \T1/pcr/m/n/10 emodpy_malaria.interventions.bednet\T1/ptm/m/n/10 , Overfull \hbox (2.6225pt too wide) in paragraph at lines 231--232 []| \T1/pcr/m/n/10 emodpy_malaria.interventions.common\T1/ptm/m/n/10 , Overfull \hbox (32.6225pt too wide) in paragraph at lines 232--233 []| \T1/pcr/m/n/10 emodpy_malaria.interventions.diag_survey\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 233--234 []| \T1/pcr/m/n/10 emodpy_malaria.interventions.drug\T1/ptm/m/n/10 , Overfull \hbox (44.6225pt too wide) in paragraph at lines 234--235 []| \T1/pcr/m/n/10 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wide) in paragraph at lines 244--245 []| \T1/pcr/m/n/10 emodpy_malaria.interventions.spacespraying\T1/ptm/m/n/10 , Overfull \hbox (20.6225pt too wide) in paragraph at lines 245--246 []| \T1/pcr/m/n/10 emodpy_malaria.interventions.sugartrap\T1/ptm/m/n/10 , Overfull \hbox (68.6225pt too wide) in paragraph at lines 246--247 []| \T1/pcr/m/n/10 emodpy_malaria.interventions.treatment_seeking\T1/ptm/m/n/10 , Overfull \hbox (14.6225pt too wide) in paragraph at lines 247--248 []| \T1/pcr/m/n/10 emodpy_malaria.interventions.udbednet\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 252--254 []\T1/pcr/m/n/10 MosquitoRelease() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (6.12027pt too wide) in paragraph at lines 252--254 \T1/ptm/m/it/10 emodpy_malaria.interventions.mosquitorelease\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 257--259 []\T1/pcr/m/n/10 new_intervention() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 257--259 \T1/ptm/m/it/10 emodpy_malaria.interventions.inputeir\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 259--261 []\T1/pcr/m/n/10 new_intervention_as_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 261--263 []\T1/pcr/m/n/10 new_intervention_as_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 263--265 []\T1/pcr/m/n/10 new_intervention_as_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 265--267 []\T1/pcr/m/n/10 new_intervention_as_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 267--269 []\T1/pcr/m/n/10 new_intervention_as_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (6.12027pt too wide) in paragraph at lines 267--269 \T1/ptm/m/it/10 emodpy_malaria.interventions.mosquitorelease\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 269--271 []\T1/pcr/m/n/10 new_intervention_as_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 269--271 \T1/ptm/m/it/10 emodpy_malaria.interventions.spacespraying\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 271--273 []\T1/pcr/m/n/10 new_intervention_as_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 273--275 []\T1/pcr/m/n/10 new_intervention_as_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 7291) in paragraph at lines 278--280 []\T1/pcr/m/n/10 outbreakindividualmalariagenetics() \T1/ptm/m/n/10 (\T1/ptm/m/ it/10 in Overfull \hbox (112.2593pt too wide) in paragraph at lines 278--280 \T1/ptm/m/it/10 mod-ule emodpy_malaria.interventions.outbreakindividualmalariag enetics\T1/ptm/m/n/10 ), [65] Underfull \hbox (badness 7291) in paragraph at lines 280--282 []\T1/pcr/m/n/10 outbreakindividualmalariavargenes() \T1/ptm/m/n/10 (\T1/ptm/m/ it/10 in Overfull \hbox (115.31938pt too wide) in paragraph at lines 280--282 \T1/ptm/m/it/10 mod-ule emodpy_malaria.interventions.outbreakindividualmalariav argenes\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 282--284 []\T1/pcr/m/n/10 OutdoorRestKill() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (71.0599pt too wide) in paragraph at lines 287--289 []\T1/pcr/m/n/10 parameters \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.repo rters.builtin.MalariaImmunityReport Overfull \hbox (84.70978pt too wide) in paragraph at lines 289--291 []\T1/pcr/m/n/10 parameters \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.repo rters.builtin.MalariaPatientJSONReport Overfull \hbox (46.07018pt too wide) in paragraph at lines 291--293 []\T1/pcr/m/n/10 parameters \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.repo rters.builtin.MalariaSqlReport Overfull \hbox (71.06006pt too wide) in paragraph at lines 293--295 []\T1/pcr/m/n/10 parameters \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.repo rters.builtin.MalariaSummaryReport Overfull \hbox (91.58981pt too wide) in paragraph at lines 295--297 []\T1/pcr/m/n/10 parameters \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.repo rters.builtin.MalariaSurveyJSONAnalyzer Overfull \hbox (46.07019pt too wide) in paragraph at lines 297--299 []\T1/pcr/m/n/10 parameters \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.repo rters.builtin.ReportDrugStatus Overfull \hbox (56.06006pt too wide) in paragraph at lines 299--301 []\T1/pcr/m/n/10 parameters \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.repo rters.builtin.ReportEventCounter Overfull \hbox (105.57004pt too wide) in paragraph at lines 301--303 []\T1/pcr/m/n/10 parameters \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.repo rters.builtin.ReportHumanMigrationTracking Overfull \hbox (80.25012pt too wide) in paragraph at lines 303--305 []\T1/pcr/m/n/10 parameters \T1/ptm/m/n/10 (\T1/ptm/m/it/10 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767--767 \T1/ptm/m/it/10 tion_Threshold\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Di-ag-nos- Overfull \hbox (31.21352pt too wide) in paragraph at lines 836--836 \T1/ptm/m/it/10 tsteps_btwn_repetitions: Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 get: [][]ob-ject[][] Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Ev-ery-one\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 6364) in paragraph at lines 836--836 \T1/ptm/m/it/10 start_day: [][]int[][] Underfull \hbox (badness 5203) in paragraph at lines 836--836 \T1/ptm/m/it/10 = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 di-ag-nos- Overfull \hbox (63.55446pt too wide) in paragraph at lines 836--836 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 BLOOD_SMEAR_PARASITES\TS1/ptm/m/it/10 '\T1/pt m/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 di-ag-nos- Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 tic_threshold: Underfull \hbox (badness 10000) in paragraph at lines 836--836 [][]\T1/ptm/m/it/10 float[][] = 40\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 mea-sure- Overfull \hbox (1.01384pt too wide) in paragraph at lines 836--836 \T1/ptm/m/it/10 ment_sensitivity: Underfull \hbox (badness 10000) in paragraph at lines 836--836 [][]\T1/ptm/m/it/10 float[][] = 0.1\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 event_name: Underfull \hbox (badness 10000) in paragraph at lines 836--836 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Di-ag- Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 nos-tic Sur-vey\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 6364) in paragraph at lines 836--836 \T1/ptm/m/it/10 node_ids: [][]list[][] Overfull \hbox (27.58405pt too wide) in paragraph at lines 836--836 \T1/ptm/m/it/10 tive_diagnosis_configs: Underfull \hbox (badness 10000) in paragraph at lines 836--836 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 neg-a- Overfull \hbox (27.58405pt too wide) in paragraph at lines 836--836 \T1/ptm/m/it/10 tive_diagnosis_configs: Overfull \hbox (6.95406pt too wide) in paragraph at lines 836--836 \T1/ptm/m/it/10 ceived_test_event: Underfull \hbox (badness 10000) in paragraph at lines 836--836 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Re- Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 ceived_Test\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 IP_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 836--836 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 NP_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 836--836 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 dis-qual-i-fy- Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 ing_properties: Overfull \hbox (9.814pt too wide) in paragraph at lines 836--836 \T1/ptm/m/it/10 ger_condition_list: Underfull \hbox (badness 10000) in paragraph at lines 836--836 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 lis-ten- Underfull \hbox (badness 10000) in paragraph at lines 836--836 \T1/ptm/m/it/10 ing_duration: Overfull \hbox (29.97432pt too wide) in paragraph at lines 836--836 \T1/ptm/m/it/10 gered_campaign_delay: Underfull \hbox (badness 10000) in paragraph at lines 836--836 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , Overfull \hbox (47.68343pt too wide) in paragraph at lines 836--836 \T1/ptm/m/it/10 check_eligibility_at_trigger: Overfull \hbox (9.71407pt too wide) in paragraph at lines 836--836 \T1/ptm/m/it/10 pire_recent_drugs: [13] [14] Underfull \hbox (badness 10000) in paragraph at lines 869--872 []\T1/pcr/b/n/10 diagnostic_type \T1/ptm/m/n/10 ^^U Type of malaria di-ag-nos-t ic used. De-fault is Underfull \hbox (badness 10000) in paragraph at lines 911--914 []\T1/ptm/m/n/10 In ga-me-to-cytes/microliter, use mea-sure- Underfull \hbox (badness 10000) in paragraph at lines 934--936 []\T1/pcr/b/n/10 measurement_sensitivity \T1/ptm/m/n/10 ^^U Set-ting for \T1/pt m/b/n/10 Mea-sure-ment_Sensitivity \T1/ptm/m/n/10 in [15] Underfull \hbox (badness 10000) in paragraph at lines 957--962 []\T1/pcr/b/n/10 IP_restrictions \T1/ptm/m/n/10 ^^U List of In-di-vid-u-al-Prop -erty key:value pairs that Underfull \hbox (badness 10000) in paragraph at lines 957--962 \T1/ptm/m/n/10 in-di-vid-u-als must have to re-ceive the di-ag-nos-tic in-ter-v en-tion. For Underfull \hbox (badness 10000) in paragraph at lines 957--962 \T1/ptm/m/n/10 ex-am-ple, \T1/pcr/m/n/10 [{"IndividualProperty1":"PropertyValue 1"}, Underfull \hbox (badness 10000) in paragraph at lines 964--969 []\T1/pcr/b/n/10 NP_restrictions \T1/ptm/m/n/10 ^^U List of Node-Prop-erty key: value pairs Underfull \hbox (badness 10000) in paragraph at lines 964--969 \T1/ptm/m/n/10 that nodes must have to re-ceive the di-ag-nos-tic in-ter-ven-ti on. Underfull \hbox (badness 10000) in paragraph at lines 964--969 \T1/ptm/m/n/10 For ex-am-ple, \T1/pcr/m/n/10 [{"NodeProperty1":"PropertyValue1" }, Underfull \hbox (badness 10000) in paragraph at lines 971--975 []\T1/pcr/b/n/10 disqualifying_properties \T1/ptm/m/n/10 ^^U List of In-di-vid- u-al-Prop-erty Underfull \hbox (badness 10000) in paragraph at lines 971--975 \T1/ptm/m/n/10 key:value pairs that cause an in-ter-ven-tion to be aborted. For ex- Underfull \hbox (badness 10000) in paragraph at lines 971--975 \T1/ptm/m/n/10 am-ple, \T1/pcr/m/n/10 [{"IndividualProperty1":"PropertyValue1"} , Underfull \hbox (badness 10000) in paragraph at lines 994--997 []\T1/pcr/b/n/10 expire_recent_drugs \T1/ptm/m/n/10 ^^U Adds \T1/pcr/m/n/10 [{" DrugStatus:None"}] \T1/ptm/m/n/10 to \T1/ptm/b/n/10 Prop- [16] Underfull \hbox (badness 10000) in paragraph at lines 1083--1083 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1083--1083 \T1/ptm/m/it/10 drug_code: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cam- Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 paign_type: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 MDA\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 6775) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_days: Overfull \hbox (19.21352pt too wide) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 tsteps_btwn_repetitions: Underfull \hbox (badness 7344) in paragraph at lines 1114--1114 [][]\T1/ptm/m/it/10 int[][] = 60\T1/ptm/m/n/10 , \T1/ptm/m/it/10 di-ag- Overfull \hbox (51.55446pt too wide) in paragraph at lines 1114--1114 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 BLOOD_SMEAR_PARASITES\TS1/ptm/m/it/10 '\T1/pt m/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 di-ag-nos- Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 = 40\T1/ptm/m/n/10 , \T1/ptm/m/it/10 mea-sure- Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 ment_sensitivity: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 [][]\T1/ptm/m/it/10 float[][] = 0.1\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 fmda_radius: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , Overfull \hbox (6.22408pt too wide) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 node_selection_type: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 DIS- Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 TANCE_ONLY\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 trig-ger_coverage: Underfull \hbox (badness 5667) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 balls: [][]int[][] = 0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 treat-ment_delay: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 trig- Overfull \hbox (17.97432pt too wide) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 gered_campaign_delay: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 tar-get_group: Overfull \hbox (33.88365pt too wide) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 drug_ineligibility_duration: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , Overfull \hbox (33.19351pt too wide) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Overfull \hbox (26.53346pt too wide) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 dis-qual-i-fy- Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 ing_properties: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 ger_condition_list: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 ten-ing_duration: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 ent_drug_configs: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 get_residents_only: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 [][]\T1/ptm/m/it/10 int[][] = 1\T1/ptm/m/n/10 , Overfull \hbox (35.68343pt too wide) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 check_eligibility_at_trigger: Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 [][]\T1/ptm/m/it/10 bool[][] = Underfull \hbox (badness 10000) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 False\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-ceiv- Overfull \hbox (144.47322pt too wide) in paragraph at lines 1114--1114 \T1/ptm/m/it/10 ing_drugs_event_name=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Received _Campaign_Drugs\TS1/ptm/m/it/10 '\T1/pcr/m/n/10 ) [17] [18] [19] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pcr.fd) Underfull \hbox (badness 10000) in paragraph at lines 1265--1268 []\T1/pcr/b/n/10 ind_property_restrictions \T1/ptm/m/n/10 ^^U The set-ting for \T1/ptm/b/n/10 Prop- Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_days: [][]list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age: [][]float[][] = Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 drug_configs: [][]list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-ceiv-ing_drugs_event: Overfull \hbox (57.71327pt too wide) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 emod_api.interventions.common.BroadcastEvent Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 rep-e-ti-tions: [][]int[ ][] = Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tsteps_btwn_repetitions: Underfull \hbox (badness 6348) in paragraph at lines 1310--1310 [][]\T1/ptm/m/it/10 int[][] = 60\T1/ptm/m/n/10 , \T1/ptm/m/it/10 node_ids: [][] list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ex-pire_recent_drugs: Overfull \hbox (86.50304pt too wide) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 emod_api.interventions.common.PropertyValueChanger Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 6032) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 dis-qual-i- fy- Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 ing_properties: [][]list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1310--1310 \T1/ptm/m/it/10 trig-ger_condition_list: [][]list[][] = [20] Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_days: [][]list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age: [][]float[][] = Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 \T1/ptm/m/it/10 1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 drug_configs: [][]list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-ceiv-ing_drugs_event: Overfull \hbox (63.71327pt too wide) in paragraph at lines 1325--1325 \T1/ptm/m/it/10 emod_api.interventions.common.BroadcastEvent Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 \T1/ptm/m/it/10 tsteps_btwn_repetitions: [][]int[][] Underfull \hbox (badness 7504) in paragraph at lines 1325--1325 \T1/ptm/m/it/10 = 60\T1/ptm/m/n/10 , \T1/ptm/m/it/10 treat-ment_delay: [][]int[ ][] Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 BLOOD_SMEAR_PARASITES\TS1/ptm/m/it/10 '\T1/pt m/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 \T1/ptm/m/it/10 40\T1/ptm/m/n/10 , \T1/ptm/m/it/10 mea-sure-ment_sensitivity: Underfull \hbox (badness 6063) in paragraph at lines 1325--1325 [][]\T1/ptm/m/it/10 float[][] = 0.1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 node_ids: [ ][]list[][] Overfull \hbox (92.50304pt too wide) in paragraph at lines 1325--1325 \T1/ptm/m/it/10 emod_api.interventions.common.PropertyValueChanger Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar-get_gro up: Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 \T1/ptm/m/it/10 any = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Ev-ery-one\TS1/ptm/m/it /10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 trig- Underfull \hbox (badness 10000) in paragraph at lines 1325--1325 \T1/ptm/m/it/10 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 check_eligibility_at_trigger: Underfull \hbox (badness 10000) in paragraph at lines 1326--1329 \T1/ptm/m/n/10 Add an MSAT (mass screen-ing and treat-ment) drug in-ter-ven-tio n to your cam-paign. See [21] Underfull \hbox (badness 10000) in paragraph at lines 1340--1340 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_days: [][]list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1340--1340 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 trig-ger_coverage: Underfull \hbox (badness 7221) in paragraph at lines 1340--1340 [][]\T1/ptm/m/it/10 float[][] = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age: [ ][]float[][] Underfull \hbox (badness 7595) in paragraph at lines 1340--1340 \T1/ptm/m/it/10 = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 drug_configs: [][]list[][] = Underfull \hbox (badness 10000) in paragraph at lines 1340--1340 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-ceiv-ing_drugs_event: Overfull \hbox (63.71327pt too wide) in paragraph at lines 1340--1340 \T1/ptm/m/it/10 emod_api.interventions.common.BroadcastEvent Underfull \hbox (badness 10000) in paragraph at lines 1340--1340 \T1/ptm/m/it/10 tsteps_btwn_repetitions: [][]int[][] Underfull \hbox (badness 10000) in paragraph at lines 1340--1340 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 BLOOD_SMEAR_PARASITES\TS1/ptm/m/it/10 '\T1/pt m/m/n/10 , Overfull \hbox (92.50304pt too wide) in paragraph at lines 1340--1340 \T1/ptm/m/it/10 emod_api.interventions.common.PropertyValueChanger Underfull \hbox (badness 10000) in paragraph at lines 1340--1340 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1340--1340 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1340--1340 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1340--1340 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar-get_gro up: Underfull \hbox (badness 10000) in paragraph at lines 1340--1340 \T1/ptm/m/it/10 any = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Ev-ery-one\TS1/ptm/m/it /10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 trig- Underfull \hbox (badness 7869) in paragraph at lines 1341--1344 \T1/ptm/m/n/10 Add an fMDA (fo-cal mass drug ad-min-is-tra-tion) drug in-ter-ve n-tion to your cam-paign. See Underfull \hbox (badness 10000) in paragraph at lines 1355--1355 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day: [][]int[][] = Underfull \hbox (badness 6141) in paragraph at lines 1355--1355 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age: [][]float[][] = 1 \T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1355--1355 \T1/ptm/m/it/10 re-ceiv-ing_drugs_event: Overfull \hbox (75.71327pt too wide) in paragraph at lines 1355--1355 \T1/ptm/m/it/10 emod_api.interventions.common.BroadcastEvent Overfull \hbox (9.55446pt too wide) in paragraph at lines 1355--1355 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 BLOOD_SMEAR_PARASITES\TS1/ptm/m/it/10 '\T1/pt m/m/n/10 , Overfull \hbox (104.50304pt too wide) in paragraph at lines 1355--1355 \T1/ptm/m/it/10 emod_api.interventions.common.PropertyValueChanger Underfull \hbox (badness 10000) in paragraph at lines 1355--1355 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1355--1355 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1355--1355 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1355--1355 \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1355--1355 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 dis-qual-i- fy- [22] Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day: [][]int[][] = Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age: [][]float[][] = 1 \T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 \T1/ptm/m/it/10 re-ceiv-ing_drugs_event: Overfull \hbox (69.71327pt too wide) in paragraph at lines 1370--1370 \T1/ptm/m/it/10 emod_api.interventions.common.BroadcastEvent Underfull \hbox (badness 7613) in paragraph at lines 1370--1370 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lis-ten-ing_duration: Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 trig-ger_covera ge: Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 \T1/ptm/m/it/10 = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 node_selection_type: Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 DIS-TANCE_ONLY\ TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 \T1/ptm/m/it/10 node_ids: [][]list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 \T1/ptm/m/it/10 ex-pire_recent_drugs: Overfull \hbox (98.50304pt too wide) in paragraph at lines 1370--1370 \T1/ptm/m/it/10 emod_api.interventions.common.PropertyValueChanger Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1370--1370 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 dis-qual-i- fy- Underfull \hbox (badness 10000) in paragraph at lines 1385--1385 \T1/ptm/m/it/10 TANCE_ONLY\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ev ent_trigger: [23] Underfull \hbox (badness 5091) in paragraph at lines 1444--1444 [][]\T1/ptm/m/it/10 int[][] = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 node_ids: [][]l ist[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1477--1477 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1477--1477 \T1/ptm/m/it/10 monthly_eir: Underfull \hbox (badness 10000) in paragraph at lines 1477--1477 [][]\T1/ptm/m/it/10 list[][]\T1/ptm/m/n/10 , \T1/ptm/m/it/10 file-name: [24] Underfull \hbox (badness 5274) in paragraph at lines 1509--1509 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er- Underfull \hbox (badness 10000) in paragraph at lines 1509--1509 \T1/ptm/m/it/10 killing_eff=1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in- Underfull \hbox (badness 10000) in paragraph at lines 1509--1509 \T1/ptm/m/it/10 sec-ti-cide=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1530--1530 []\T1/ptm/m/it/10 schema_path_container\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1530--1530 [][]\T1/ptm/m/it/10 float[][] = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-mo- Underfull \hbox (badness 10000) in paragraph at lines 1530--1530 \T1/ptm/m/it/10 killing_exponential_decay_rate: [25] Underfull \hbox (badness 10000) in paragraph at lines 1573--1573 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1573--1573 \T1/ptm/m/it/10 re-leased_number: Underfull \hbox (badness 5954) in paragraph at lines 1573--1573 [][]\T1/ptm/m/it/10 int[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 1573--1573 \T1/ptm/m/it/10 leased_fraction: Underfull \hbox (badness 10000) in paragraph at lines 1573--1573 \T1/ptm/m/it/10 leased_infectious: Underfull \hbox (badness 10000) in paragraph at lines 1573--1573 [][]\T1/ptm/m/it/10 float[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 1573--1573 \T1/ptm/m/it/10 leased_species: Underfull \hbox (badness 10000) in paragraph at lines 1573--1573 \T1/ptm/m/it/10 re-leased_genome: Underfull \hbox (badness 10000) in paragraph at lines 1573--1573 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1593--1595 []\T1/pcr/b/n/10 released_infectious \T1/ptm/m/n/10 ^^U The frac-tion of vec-to rs re-leased that Underfull \hbox (badness 10000) in paragraph at lines 1593--1595 \T1/ptm/m/n/10 are to be in-fec-tious. One can only use this fea-ture when Overfull \hbox (16.27205pt too wide) in paragraph at lines 1593--1595 \T1/ptm/m/n/10 `Malaria_Model'!='MALARIA_MECHANISTIC_MODEL_WITH_PARASITE_GENETI CS' Underfull \hbox (badness 10000) in paragraph at lines 1619--1619 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Overfull \hbox (16.35448pt too wide) in paragraph at lines 1619--1619 \T1/ptm/m/it/10 start_day: Underfull \hbox (badness 10000) in paragraph at lines 1619--1619 [][]\T1/ptm/m/it/10 int[][] Underfull \hbox (badness 10000) in paragraph at lines 1619--1619 \T1/ptm/m/it/10 = 1\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1619--1619 \T1/ptm/m/it/10 file- Overfull \hbox (2.35487pt too wide) in paragraph at lines 1619--1619 \T1/ptm/m/it/10 None\T1/pcr/m/n/10 ) [26] Overfull \hbox (235.6943pt too wide) in paragraph at lines 1645--1645 []\T1/ptm/m/it/10 schema_path_container\T1/ptm/m/n/10 , Overfull \hbox (178.35448pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 start_day: Overfull \hbox (147.8048pt too wide) in paragraph at lines 1645--1645 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (143.99501pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 = Overfull \hbox (144.74501pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 1\T1/ptm/m/n/10 , Overfull \hbox (150.01491pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 de- Overfull \hbox (152.79494pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 mo- Overfull \hbox (212.73457pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 graphic_coverage: Overfull \hbox (155.0249pt too wide) in paragraph at lines 1645--1645 [][]\T1/ptm/m/it/10 float[][] Overfull \hbox (143.99501pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 = Overfull \hbox (152.24501pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 1.0\T1/ptm/m/n/10 , Overfull \hbox (152.0448pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 tar- Overfull \hbox (224.36418pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 get_num_individuals: Overfull \hbox (147.8048pt too wide) in paragraph at lines 1645--1645 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (143.99501pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 = Overfull \hbox (160.85487pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (152.97473pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 cre- Overfull \hbox (264.54375pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 ate_nucleotide_sequence_from: Overfull \hbox (147.80469pt too wide) in paragraph at lines 1645--1645 [][]\T1/ptm/m/it/10 str[][] Overfull \hbox (143.99501pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 = Overfull \hbox (160.79482pt too wide) in paragraph at lines 1645--1645 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 BAR- Overfull \hbox (207.99452pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 CODE_STRING\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (154.26491pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 bar- Overfull \hbox (187.79442pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 code_string: Overfull \hbox (147.80469pt too wide) in paragraph at lines 1645--1645 [][]\T1/ptm/m/it/10 str[][] Overfull \hbox (143.99501pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 = Overfull \hbox (160.85487pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (226.88371pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 drug_resistant_string: Overfull \hbox (147.80469pt too wide) in paragraph at lines 1645--1645 [][]\T1/ptm/m/it/10 str[][] Overfull \hbox (143.99501pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 = Overfull \hbox (160.85487pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (217.23422pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 msp_variant_value: Overfull \hbox (147.8048pt too wide) in paragraph at lines 1645--1645 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (143.99501pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 = Overfull \hbox (160.85487pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (238.34395pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 pfemp1_variants_values: Overfull \hbox (149.47458pt too wide) in paragraph at lines 1645--1645 [][]\T1/ptm/m/it/10 list[][] Overfull \hbox (143.99501pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 = Overfull \hbox (160.85487pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (154.26491pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 bar- Overfull \hbox (329.51305pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 code_allele_frequencies_per_genome_location: Overfull \hbox (149.47458pt too wide) in paragraph at lines 1645--1645 [][]\T1/ptm/m/it/10 list[][] Overfull \hbox (143.99501pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 = Overfull \hbox (160.85487pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (368.60234pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 drug_resistant_allele_frequencies_per_genome_location: Overfull \hbox (149.47458pt too wide) in paragraph at lines 1645--1645 [][]\T1/ptm/m/it/10 list[][] Overfull \hbox (143.99501pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 = Overfull \hbox (164.35487pt too wide) in paragraph at lines 1645--1645 \T1/ptm/m/it/10 None\T1/pcr/m/n/10 ) [27] [28] Underfull \hbox (badness 10000) in paragraph at lines 1694--1698 []\T1/pcr/b/n/10 drug_resistant_allele_frequencies_per_genome_location \T1/ptm/ m/n/10 ^^U ^^PThe [29] Overfull \hbox (235.6943pt too wide) in paragraph at lines 1722--1722 []\T1/ptm/m/it/10 schema_path_container\T1/ptm/m/n/10 , Overfull \hbox (178.35448pt too wide) in paragraph at lines 1722--1722 \T1/ptm/m/it/10 start_day: Overfull \hbox (147.8048pt too wide) in paragraph at lines 1722--1722 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (143.99501pt too wide) in paragraph at lines 1722--1722 \T1/ptm/m/it/10 = Overfull \hbox (144.74501pt too wide) in paragraph at lines 1722--1722 \T1/ptm/m/it/10 1\T1/ptm/m/n/10 , Overfull \hbox (150.01491pt too wide) in paragraph at lines 1722--1722 \T1/ptm/m/it/10 de- Overfull \hbox (152.79494pt too wide) in paragraph at lines 1722--1722 \T1/ptm/m/it/10 mo- Overfull \hbox (212.73457pt too wide) in paragraph at lines 1722--1722 \T1/ptm/m/it/10 graphic_coverage: Overfull \hbox (155.0249pt too wide) in paragraph at lines 1722--1722 [][]\T1/ptm/m/it/10 float[][] Overfull \hbox (143.99501pt too wide) in paragraph at lines 1722--1722 \T1/ptm/m/it/10 = Overfull \hbox (152.24501pt too wide) in paragraph at lines 1722--1722 \T1/ptm/m/it/10 1.0\T1/ptm/m/n/10 , Overfull \hbox (152.0448pt too wide) in paragraph at lines 1722--1722 \T1/ptm/m/it/10 tar- Overfull \hbox (224.36418pt too wide) in paragraph at lines 1722--1722 \T1/ptm/m/it/10 get_num_individuals: Overfull \hbox (147.8048pt too wide) in paragraph at lines 1722--1722 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (143.99501pt too wide) in paragraph at lines 1722--1722 \T1/ptm/m/it/10 = Overfull \hbox (160.85487pt too wide) in paragraph at lines 1722--1722 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (178.34447pt too wide) in paragraph at lines 1722--1722 \T1/ptm/m/it/10 irbc_type: Overfull \hbox (149.47458pt too wide) in paragraph at lines 1722--1722 [][]\T1/ptm/m/it/10 list[][] Overfull \hbox (143.99501pt too wide) in paragraph at lines 1722--1722 \T1/ptm/m/it/10 = Overfull \hbox (160.85487pt too wide) in paragraph at lines 1722--1722 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (150.57483pt too wide) in paragraph at lines 1722--1722 \T1/ptm/m/it/10 mi- Overfull \hbox (210.5643pt too wide) in paragraph at lines 1722--1722 \T1/ptm/m/it/10 nor_epitope_type: Overfull \hbox (149.47458pt too wide) in paragraph at lines 1722--1722 [][]\T1/ptm/m/it/10 list[][] Overfull \hbox (143.99501pt too wide) in paragraph at lines 1722--1722 \T1/ptm/m/it/10 = Overfull \hbox (160.85487pt too wide) in paragraph at lines 1722--1722 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (178.3446pt too wide) in paragraph at lines 1722--1722 \T1/ptm/m/it/10 msp_type: Overfull \hbox (147.8048pt too wide) in paragraph at lines 1722--1722 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (143.99501pt too wide) in paragraph at lines 1722--1722 \T1/ptm/m/it/10 = Overfull \hbox (164.35487pt too wide) in paragraph at lines 1722--1722 \T1/ptm/m/it/10 None\T1/pcr/m/n/10 ) [30] Overfull \hbox (19.6943pt too wide) in paragraph at lines 1770--1770 []\T1/ptm/m/it/10 schema_path_container\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1770--1770 \T1/ptm/m/it/10 killing_effect\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1770--1770 \T1/ptm/m/it/10 in-sec-ti- Underfull \hbox (badness 10000) in paragraph at lines 1770--1770 \T1/ptm/m/it/10 cide_name=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1770--1770 \T1/ptm/m/it/10 start_day=1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar- Underfull \hbox (badness 10000) in paragraph at lines 1770--1770 \T1/ptm/m/it/10 get_coverage=1.0\T1/ptm/m/n/10 , Overfull \hbox (41.63394pt too wide) in paragraph at lines 1770--1770 \T1/ptm/m/it/10 killing_predecay_duration=0\T1/ptm/m/n/10 , Overfull \hbox (10.33417pt too wide) in paragraph at lines 1770--1770 \T1/ptm/m/it/10 killing_decay_rate=0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1809--1809 \T1/ptm/m/it/10 = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 spray_coverage: Overfull \hbox (5.18481pt too wide) in paragraph at lines 1834--1834 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , Overfull \hbox (4.35448pt too wide) in paragraph at lines 1834--1834 \T1/ptm/m/it/10 start_day: Underfull \hbox (badness 10000) in paragraph at lines 1834--1834 \T1/ptm/m/it/10 file- Underfull \hbox (badness 10000) in paragraph at lines 1834--1834 \T1/ptm/m/it/10 name: Underfull \hbox (badness 10000) in paragraph at lines 1834--1834 [][]\T1/ptm/m/it/10 str[][] = [31] Underfull \hbox (badness 6893) in paragraph at lines 1851--1851 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day: [][]int[] [] = 0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1851--1851 \T1/ptm/m/it/10 spray_coverage: [][]float[][] = 1.0\T1/ptm/m/n/10 , Underfull \hbox (badness 7099) in paragraph at lines 1851--1851 \T1/ptm/m/it/10 ex-pi-ra-tion_constant: [][]int[][] = 100\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1898--1898 []\T1/ptm/m/it/10 campaign\T1/ptm/m/n/10 , [32] Underfull \hbox (badness 10000) in paragraph at lines 1934--1938 []\T1/pcr/b/n/10 of individuals to target with the intervention. Default is Underfull \hbox (badness 10000) in paragraph at lines 1934--1938 \T1/ptm/m/n/10 (\T1/pcr/m/sl/10 properties\T1/ptm/m/n/10 ) ^^U \T1/pcr/m/n/10 [ { "trigger":"NewClinicalCase","coverage":0. Underfull \hbox (badness 10000) in paragraph at lines 1934--1938 \T1/pcr/m/n/10 8,"agemin":15,"agemax":70, "seek":0.4,"rate":0.3}, Underfull \hbox (badness 10000) in paragraph at lines 1934--1938 \T1/pcr/m/n/10 {"trigger":"NewSevereCase","coverage":0.8,"seek":0.6, Underfull \hbox (badness 10000) in paragraph at lines 1952--1954 []\T1/pcr/b/n/10 must have to receive the intervention. For example, Underfull \hbox (badness 10000) in paragraph at lines 1952--1954 \T1/ptm/m/n/10 (\T1/pcr/m/sl/10 individuals\T1/ptm/m/n/10 ) ^^U \T1/pcr/m/n/10 [{"IndividualProperty1":"PropertyValue1"}, Underfull \hbox (badness 10000) in paragraph at lines 1982--1982 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day: [][]int[][] = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 dis- Underfull \hbox (badness 10000) in paragraph at lines 1982--1982 \T1/ptm/m/it/10 0.0013698630136986301\T1/ptm/m/n/10 , \T1/ptm/m/it/10 killing_e ff: Underfull \hbox (badness 10000) in paragraph at lines 1982--1982 \T1/ptm/m/it/10 0.0006849315068493151\T1/ptm/m/n/10 , \T1/ptm/m/it/10 iv_name: Underfull \hbox (badness 10000) in paragraph at lines 1982--1982 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Us-ageDe-pen-de ntBed-net\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1982--1982 \T1/ptm/m/it/10 sonal_dependence: [][]dict[][] = None\T1/ptm/m/n/10 , [33] [34] [35] Underfull \hbox (badness 10000) in paragraph at lines 2180--2180 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2180--2180 \T1/ptm/m/it/10 start_day\T1/ptm/m/n/10 , \T1/ptm/m/it/10 file- Underfull \hbox (badness 10000) in paragraph at lines 2195--2195 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2195--2195 \T1/ptm/m/it/10 start_day: [][]int[][] = Underfull \hbox (badness 10000) in paragraph at lines 2195--2195 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 du-ra-tion_days: Underfull \hbox (badness 10000) in paragraph at lines 2195--2195 [][]\T1/ptm/m/it/10 int[][] = 365000\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2195--2195 \T1/ptm/m/it/10 clude_vector_state: Underfull \hbox (badness 10000) in paragraph at lines 2195--2195 [][]\T1/ptm/m/it/10 int[][] = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 strat- Underfull \hbox (badness 10000) in paragraph at lines 2195--2195 \T1/ptm/m/it/10 ify_by: [][]str[][] = Underfull \hbox (badness 10000) in paragraph at lines 2195--2195 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 GENOME\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ ptm/m/it/10 com- Overfull \hbox (9.02399pt too wide) in paragraph at lines 2195--2195 \T1/ptm/m/it/10 bine_similar_genomes: Underfull \hbox (badness 10000) in paragraph at lines 2195--2195 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 spe- Overfull \hbox (102.76315pt too wide) in paragraph at lines 2195--2195 \T1/ptm/m/it/10 cific_genome_combinations_for_stratification: Underfull \hbox (badness 10000) in paragraph at lines 2195--2195 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 al- Overfull \hbox (64.54318pt too wide) in paragraph at lines 2195--2195 \T1/ptm/m/it/10 lele_combinations_for_stratification: Overfull \hbox (2.32376pt too wide) in paragraph at lines 2195--2195 \T1/ptm/m/it/10 les_for_stratification: Underfull \hbox (badness 10000) in paragraph at lines 2195--2195 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- [36] [37] Underfull \hbox (badness 10000) in paragraph at lines 2275--2275 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2294--2294 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 6893) in paragraph at lines 2294--2294 \T1/ptm/m/it/10 = 365000\T1/ptm/m/n/10 , \T1/ptm/m/it/10 nodes: Underfull \hbox (badness 10000) in paragraph at lines 2294--2294 \T1/ptm/m/it/10 ual_property_filter: Underfull \hbox (badness 10000) in paragraph at lines 2294--2294 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , \T1/ptm/m/it/ 10 in-fec- Underfull \hbox (badness 10000) in paragraph at lines 2294--2294 \T1/ptm/m/it/10 tious-ness_bins: Underfull \hbox (badness 10000) in paragraph at lines 2294--2294 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Overfull \hbox (4.30418pt too wide) in paragraph at lines 2294--2294 \T1/ptm/m/it/10 max_number_reports: Underfull \hbox (badness 7291) in paragraph at lines 2294--2294 [][]\T1/ptm/m/it/10 int[][] = 100\T1/ptm/m/n/10 , \T1/ptm/m/it/10 par-a- Underfull \hbox (badness 10000) in paragraph at lines 2294--2294 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- [38] Underfull \hbox (badness 10000) in paragraph at lines 2355--2355 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i- Underfull \hbox (badness 10000) in paragraph at lines 2371--2371 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2371--2371 \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2371--2371 \T1/ptm/m/it/10 start_day: Underfull \hbox (badness 10000) in paragraph at lines 2371--2371 \T1/ptm/m/it/10 ra-tion_days: Underfull \hbox (badness 10000) in paragraph at lines 2371--2371 \T1/ptm/m/it/10 nodes: Overfull \hbox (3.20416pt too wide) in paragraph at lines 2371--2371 \T1/ptm/m/it/10 pretty_format: Overfull \hbox (15.2441pt too wide) in paragraph at lines 2371--2371 \T1/ptm/m/it/10 port_description: [39] Underfull \hbox (badness 10000) in paragraph at lines 2411--2411 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2411--2411 \T1/ptm/m/it/10 man- Underfull \hbox (badness 10000) in paragraph at lines 2411--2411 \T1/ptm/m/it/10 i-fest\T1/ptm/m/n/10 , Overfull \hbox (10.35448pt too wide) in paragraph at lines 2411--2411 \T1/ptm/m/it/10 start_day: Overfull \hbox (6.45485pt too wide) in paragraph at lines 2411--2411 \T1/ptm/m/it/10 end_day: Underfull \hbox (badness 10000) in paragraph at lines 2411--2411 [][]\T1/ptm/m/it/10 int[][] = Overfull \hbox (1.74501pt too wide) in paragraph at lines 2411--2411 \T1/ptm/m/it/10 365000\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2411--2411 \T1/ptm/m/it/10 re-port- Overfull \hbox (21.46431pt too wide) in paragraph at lines 2411--2411 \T1/ptm/m/it/10 ing_interval: Underfull \hbox (badness 10000) in paragraph at lines 2411--2411 [][]\T1/ptm/m/it/10 int[][] = Overfull \hbox (1.74501pt too wide) in paragraph at lines 2411--2411 \T1/ptm/m/it/10 365000\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2411--2411 \T1/ptm/m/it/10 nodes: Underfull \hbox (badness 10000) in paragraph at lines 2411--2411 [][]\T1/ptm/m/it/10 list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2411--2411 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2411--2411 \T1/ptm/m/it/10 re- Overfull \hbox (28.1245pt too wide) in paragraph at lines 2411--2411 \T1/ptm/m/it/10 port_filename: Underfull \hbox (badness 10000) in paragraph at lines 2411--2411 [][]\T1/ptm/m/it/10 str[][] = Underfull \hbox (badness 10000) in paragraph at lines 2411--2411 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Spa- Underfull \hbox (badness 10000) in paragraph at lines 2411--2411 \T1/ptm/m/it/10 tial-Re- Underfull \hbox (badness 10000) in paragraph at lines 2411--2411 \T1/ptm/m/it/10 port- Underfull \hbox (badness 10000) in paragraph at lines 2411--2411 \T1/ptm/m/it/10 Malar- Underfull \hbox (badness 10000) in paragraph at lines 2411--2411 \T1/ptm/m/it/10 i-aFil- Overfull \hbox (13.23434pt too wide) in paragraph at lines 2411--2411 \T1/ptm/m/it/10 tered.json\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2411--2411 \T1/ptm/m/it/10 spa- Overfull \hbox (56.87419pt too wide) in paragraph at lines 2411--2411 \T1/ptm/m/it/10 tial_output_channels: Underfull \hbox (badness 10000) in paragraph at lines 2411--2411 [][]\T1/ptm/m/it/10 list[][] = [40] Underfull \hbox (badness 10000) in paragraph at lines 2439--2447 \T1/ptm/m/n/10 ^^PBlood_Smear_Gametocyte_Prevalence^^Q, ^^PBlood_Smear_Parasite _Prevalence^^Q, Underfull \hbox (badness 10000) in paragraph at lines 2439--2447 \T1/ptm/m/n/10 ^^PCam-paign_Cost^^Q, ^^PDaily_Bites_Per_Human^^Q, ^^PDaily_EIR^ ^Q, ^^PDis-ease_Deaths^^Q, Underfull \hbox (badness 10000) in paragraph at lines 2439--2447 \T1/ptm/m/n/10 ^^PNew_Reported_Infections^^Q, ^^PNew_Severe_Cases^^Q, ^^PPCR_Ga metocyte_Prevalence^^Q, Underfull \hbox (badness 10000) in paragraph at lines 2439--2447 \T1/ptm/m/n/10 ^^PPCR_Parasite_Prevalence^^Q, ^^PPfHRP2_Prevalence^^Q, ^^PPop-u -la-tion^^Q, ^^PPreva- Underfull \hbox (badness 10000) in paragraph at lines 2439--2447 \T1/ptm/m/n/10 lence^^Q, ^^PRain-fall^^Q, ^^PRel-a-tive_Humidity^^Q, ^^PTrue_Pr evalence^^Q De-faults: Underfull \hbox (badness 10000) in paragraph at lines 2460--2460 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2460--2460 \T1/ptm/m/it/10 start_day: [][]int[][] = Underfull \hbox (badness 10000) in paragraph at lines 2460--2460 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 du-ra-tion_days: Underfull \hbox (badness 10000) in paragraph at lines 2460--2460 [][]\T1/ptm/m/it/10 int[][] = 365000\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2460--2460 \T1/ptm/m/it/10 event_trigger_list: Underfull \hbox (badness 6893) in paragraph at lines 2460--2460 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 nodes: Underfull \hbox (badness 10000) in paragraph at lines 2460--2460 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 2460--2460 \T1/ptm/m/it/10 port_description: Underfull \hbox (badness 10000) in paragraph at lines 2481--2481 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 end_day: Underfull \hbox (badness 10000) in paragraph at lines 2481--2481 [][]\T1/ptm/m/it/10 int[][] = 365000\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in- Underfull \hbox (badness 10000) in paragraph at lines 2481--2481 \T1/ptm/m/it/10 clude_infection_table: Underfull \hbox (badness 10000) in paragraph at lines 2481--2481 [][]\T1/ptm/m/it/10 int[][] = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in- [41] Underfull \hbox (badness 10000) in paragraph at lines 2543--2543 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 7168) in paragraph at lines 2543--2543 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 du-ra-tion_days: Underfull \hbox (badness 10000) in paragraph at lines 2543--2543 [][]\T1/ptm/m/it/10 int[][] = 365000\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2543--2543 \T1/ptm/m/it/10 re-port-ing_interval: Underfull \hbox (badness 10000) in paragraph at lines 2543--2543 [][]\T1/ptm/m/it/10 int[][] = 365000\T1/ptm/m/n/10 , Overfull \hbox (10.30418pt too wide) in paragraph at lines 2543--2543 \T1/ptm/m/it/10 max_number_reports: Underfull \hbox (badness 10000) in paragraph at lines 2543--2543 [][]\T1/ptm/m/it/10 int[][] = 365000\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2543--2543 \T1/ptm/m/it/10 nodes: [][]list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2543--2543 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 age_bins: Underfull \hbox (badness 10000) in paragraph at lines 2543--2543 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2543--2543 \T1/ptm/m/it/10 pretty_format: Underfull \hbox (badness 10000) in paragraph at lines 2543--2543 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 2543--2543 \T1/ptm/m/it/10 port_description: [42] Underfull \hbox (badness 10000) in paragraph at lines 2593--2593 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 7168) in paragraph at lines 2593--2593 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 du-ra-tion_days: Underfull \hbox (badness 10000) in paragraph at lines 2593--2593 [][]\T1/ptm/m/it/10 int[][] = 365000\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2593--2593 \T1/ptm/m/it/10 event_trigger_list: Underfull \hbox (badness 10000) in paragraph at lines 2593--2593 [][]\T1/ptm/m/it/10 list[][] = None\T1/ptm/m/n/10 , Overfull \hbox (10.30418pt too wide) in paragraph at lines 2593--2593 \T1/ptm/m/it/10 max_number_reports: Underfull \hbox (badness 10000) in paragraph at lines 2593--2593 [][]\T1/ptm/m/it/10 int[][] = 365000\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2593--2593 \T1/ptm/m/it/10 nodes: [][]list[][] = Underfull \hbox (badness 10000) in paragraph at lines 2593--2593 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in-di-vid- Overfull \hbox (20.78384pt too wide) in paragraph at lines 2593--2593 \T1/ptm/m/it/10 ual_property_to_collect: Underfull \hbox (badness 10000) in paragraph at lines 2593--2593 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2593--2593 \T1/ptm/m/it/10 pretty_format: Underfull \hbox (badness 10000) in paragraph at lines 2593--2593 [][]\T1/ptm/m/it/10 int[][] = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 2593--2593 \T1/ptm/m/it/10 port_description: [43] Underfull \hbox (badness 10000) in paragraph at lines 2694--2694 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2694--2694 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in-di-vid- Overfull \hbox (26.78384pt too wide) in paragraph at lines 2694--2694 \T1/ptm/m/it/10 ual_property_to_collect: Underfull \hbox (badness 6526) in paragraph at lines 2694--2694 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , \T1/ptm/m/it/ 10 strat- Underfull \hbox (badness 10000) in paragraph at lines 2694--2694 \T1/ptm/m/it/10 ify_by_gender: Overfull \hbox (47.85474pt too wide) in paragraph at lines 2728--2728 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , Overfull \hbox (49.79494pt too wide) in paragraph at lines 2728--2728 \T1/ptm/m/it/10 man- Overfull \hbox (35.35486pt too wide) in paragraph at lines 2728--2728 \T1/ptm/m/it/10 i- Overfull \hbox (45.63463pt too wide) in paragraph at lines 2728--2728 \T1/ptm/m/it/10 fest\T1/ptm/m/n/10 , Overfull \hbox (46.26491pt too wide) in paragraph at lines 2728--2728 \T1/ptm/m/it/10 bar- Overfull \hbox (55.34474pt too wide) in paragraph at lines 2728--2728 \T1/ptm/m/it/10 codes: Overfull \hbox (41.47458pt too wide) in paragraph at lines 2728--2728 [][]\T1/ptm/m/it/10 list[][] Overfull \hbox (35.99501pt too wide) in paragraph at lines 2728--2728 \T1/ptm/m/it/10 = Overfull \hbox (52.85487pt too wide) in paragraph at lines 2728--2728 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (122.7736pt too wide) in paragraph at lines 2728--2728 \T1/ptm/m/it/10 drug_resistant_strings: Overfull \hbox (41.47458pt too wide) in paragraph at lines 2728--2728 [][]\T1/ptm/m/it/10 list[][] Overfull \hbox (35.99501pt too wide) in paragraph at lines 2728--2728 \T1/ptm/m/it/10 = Overfull \hbox (52.85487pt too wide) in paragraph at lines 2728--2728 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (131.6536pt too wide) in paragraph at lines 2728--2728 \T1/ptm/m/it/10 drug_resistant_stat_type: Overfull \hbox (39.80469pt too wide) in paragraph at lines 2728--2728 [][]\T1/ptm/m/it/10 str[][] Overfull \hbox (35.99501pt too wide) in paragraph at lines 2728--2728 \T1/ptm/m/it/10 = Overfull \hbox (240.52356pt too wide) in paragraph at lines 2728--2728 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 NUM_PEOPLE_WITH_RESISTANT_INFECTION\TS1/ptm/m /it/10 '\T1/ptm/m/n/10 , Overfull \hbox (68.48471pt too wide) in paragraph at lines 2728--2728 \T1/ptm/m/it/10 age_bins: Overfull \hbox (41.47458pt too wide) in paragraph at lines 2728--2728 [][]\T1/ptm/m/it/10 list[][] Overfull \hbox (35.99501pt too wide) in paragraph at lines 2728--2728 \T1/ptm/m/it/10 = Overfull \hbox (52.85487pt too wide) in paragraph at lines 2728--2728 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (40.35486pt too wide) in paragraph at lines 2728--2728 \T1/ptm/m/it/10 in- Overfull \hbox (40.35486pt too wide) in paragraph at lines 2728--2728 \T1/ptm/m/it/10 di- Overfull \hbox (44.7948pt too wide) in paragraph at lines 2728--2728 \T1/ptm/m/it/10 vid- Overfull \hbox (128.78384pt too wide) in paragraph at lines 2728--2728 \T1/ptm/m/it/10 ual_property_to_collect: Overfull \hbox (39.80469pt too wide) in paragraph at lines 2728--2728 [][]\T1/ptm/m/it/10 str[][] Overfull \hbox (35.99501pt too wide) in paragraph at lines 2728--2728 \T1/ptm/m/it/10 = Overfull \hbox (36.0248pt too wide) in paragraph at lines 2728--2728 \TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , Overfull \hbox (50.76463pt too wide) in paragraph at lines 2728--2728 \T1/ptm/m/it/10 strat- Overfull \hbox (89.68442pt too wide) in paragraph at lines 2728--2728 \T1/ptm/m/it/10 ify_by_gender: Overfull \hbox (39.8048pt too wide) in paragraph at lines 2728--2728 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (35.99501pt too wide) in paragraph at lines 2728--2728 \T1/ptm/m/it/10 = Overfull \hbox (40.24501pt too wide) in paragraph at lines 2728--2728 \T1/ptm/m/it/10 1\T1/pcr/m/n/10 ) [44] [45] Underfull \hbox (badness 10000) in paragraph at lines 2779--2779 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/10 , Overfull \hbox (17.85474pt too wide) in paragraph at lines 2808--2808 []\T1/ptm/m/it/10 task\T1/ptm/m/n/10 , Overfull \hbox (19.79494pt too wide) in paragraph at lines 2808--2808 \T1/ptm/m/it/10 man- Overfull \hbox (5.35486pt too wide) in paragraph at lines 2808--2808 \T1/ptm/m/it/10 i- Overfull \hbox (15.63463pt too wide) in paragraph at lines 2808--2808 \T1/ptm/m/it/10 fest\T1/ptm/m/n/10 , Overfull \hbox (48.68404pt too wide) in paragraph at lines 2808--2808 \T1/ptm/m/it/10 species_list: Overfull \hbox (11.47458pt too wide) in paragraph at lines 2808--2808 [][]\T1/ptm/m/it/10 list[][] Overfull \hbox (5.99501pt too wide) in paragraph at lines 2808--2808 \T1/ptm/m/it/10 = Overfull \hbox (22.85487pt too wide) in paragraph at lines 2808--2808 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (20.76463pt too wide) in paragraph at lines 2808--2808 \T1/ptm/m/it/10 strat- Overfull \hbox (60.89413pt too wide) in paragraph at lines 2808--2808 \T1/ptm/m/it/10 ify_by_species: Overfull \hbox (9.8048pt too wide) in paragraph at lines 2808--2808 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (5.99501pt too wide) in paragraph at lines 2808--2808 \T1/ptm/m/it/10 = Overfull \hbox (6.74501pt too wide) in paragraph at lines 2808--2808 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , Overfull \hbox (10.35486pt too wide) in paragraph at lines 2808--2808 \T1/ptm/m/it/10 in- Overfull \hbox (70.75449pt too wide) in paragraph at lines 2808--2808 \T1/ptm/m/it/10 clude_wolbachia: Overfull \hbox (9.8048pt too wide) in paragraph at lines 2808--2808 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (5.99501pt too wide) in paragraph at lines 2808--2808 \T1/ptm/m/it/10 = Overfull \hbox (6.74501pt too wide) in paragraph at lines 2808--2808 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , Overfull \hbox (10.35486pt too wide) in paragraph at lines 2808--2808 \T1/ptm/m/it/10 in- Overfull \hbox (65.80426pt too wide) in paragraph at lines 2808--2808 \T1/ptm/m/it/10 clude_gestation: Overfull \hbox (9.8048pt too wide) in paragraph at lines 2808--2808 [][]\T1/ptm/m/it/10 int[][] Overfull \hbox (5.99501pt too wide) in paragraph at lines 2808--2808 \T1/ptm/m/it/10 = Overfull \hbox (6.74501pt too wide) in paragraph at lines 2808--2808 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , Overfull \hbox (16.26491pt too wide) in paragraph at lines 2808--2808 \T1/ptm/m/it/10 bar- Overfull \hbox (25.34474pt too wide) in paragraph at lines 2808--2808 \T1/ptm/m/it/10 codes: Overfull \hbox (11.47458pt too wide) in paragraph at lines 2808--2808 [][]\T1/ptm/m/it/10 list[][] Overfull \hbox (5.99501pt too wide) in paragraph at lines 2808--2808 \T1/ptm/m/it/10 = Overfull \hbox (26.35487pt too wide) in paragraph at lines 2808--2808 \T1/ptm/m/it/10 None\T1/pcr/m/n/10 ) [46] Underfull \hbox (badness 10000) in paragraph at lines 2848--2848 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pa-ram-e-ters: Underfull \hbox (badness 10000) in paragraph at lines 2848--2848 \T1/ptm/m/it/10 dict = \T1/ptm/m/n/10 , Underfull \hbox (badness 6348) in paragraph at lines 2848--2848 \T1/ptm/m/it/10 En-abled: bool = Underfull \hbox (badness 10000) in paragraph at lines 2896--2896 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pa-ram-e-ters: Underfull \hbox (badness 10000) in paragraph at lines 2896--2896 \T1/ptm/m/it/10 dict = \T1/ptm/m/n/10 , Underfull \hbox (badness 6348) in paragraph at lines 2896--2896 \T1/ptm/m/it/10 En-abled: bool = [47] Underfull \hbox (badness 10000) in paragraph at lines 2920--2920 []\T1/ptm/m/it/10 class_name: Underfull \hbox (badness 10000) in paragraph at lines 2920--2920 \T1/ptm/m/it/10 = \T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2920--2920 \T1/ptm/m/it/10 En-abled: Overfull \hbox (0.5943pt too wide) in paragraph at lines 2920--2920 \T1/ptm/m/it/10 Pretty_Format: Overfull \hbox (55.2345pt too wide) in paragraph at lines 2945--2945 []\T1/ptm/m/it/10 class_name: Overfull \hbox (15.80469pt too wide) in paragraph at lines 2945--2945 \T1/ptm/m/it/10 str Overfull \hbox (11.99501pt too wide) in paragraph at lines 2945--2945 \T1/ptm/m/it/10 = Overfull \hbox (28.85487pt too wide) in paragraph at lines 2945--2945 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (18.57497pt too wide) in paragraph at lines 2945--2945 \T1/ptm/m/it/10 pa- Overfull \hbox (24.53493pt too wide) in paragraph at lines 2945--2945 \T1/ptm/m/it/10 ram- Overfull \hbox (13.01491pt too wide) in paragraph at lines 2945--2945 \T1/ptm/m/it/10 e- Overfull \hbox (23.4746pt too wide) in paragraph at lines 2945--2945 \T1/ptm/m/it/10 ters: Overfull \hbox (20.24474pt too wide) in paragraph at lines 2945--2945 \T1/ptm/m/it/10 dict Overfull \hbox (11.99501pt too wide) in paragraph at lines 2945--2945 \T1/ptm/m/it/10 = Overfull \hbox (27.5448pt too wide) in paragraph at lines 2945--2945 \T1/ptm/m/it/10 \T1/ptm/m/n/10 , Overfull \hbox (19.68495pt too wide) in paragraph at lines 2945--2945 \T1/ptm/m/it/10 En- Overfull \hbox (30.7948pt too wide) in paragraph at lines 2945--2945 \T1/ptm/m/it/10 abled: Overfull \hbox (23.0249pt too wide) in paragraph at lines 2945--2945 \T1/ptm/m/it/10 bool Overfull \hbox (11.99501pt too wide) in paragraph at lines 2945--2945 \T1/ptm/m/it/10 = Overfull \hbox (26.08485pt too wide) in paragraph at lines 2945--2945 \T1/ptm/m/it/10 True\T1/ptm/m/n/10 , Overfull \hbox (66.5943pt too wide) in paragraph at lines 2945--2945 \T1/ptm/m/it/10 Pretty_Format: Overfull \hbox (23.0249pt too wide) in paragraph at lines 2945--2945 \T1/ptm/m/it/10 bool Overfull \hbox (11.99501pt too wide) in paragraph at lines 2945--2945 \T1/ptm/m/it/10 = Overfull \hbox (29.58485pt too wide) in paragraph at lines 2945--2945 \T1/ptm/m/it/10 True\T1/pcr/m/n/10 ) Underfull \hbox (badness 5832) in paragraph at lines 2948--2953 \T1/ptm/m/n/10 The re-port can only be used when the sim-u-la-tion setup pa-ram -e-ter \T1/ptm/b/n/10 Malaria_Model \T1/ptm/m/n/10 is set to Overfull \hbox (13.2345pt too wide) in paragraph at lines 2970--2970 []\T1/ptm/m/it/10 class_name: Underfull \hbox (badness 10000) in paragraph at lines 2970--2970 \T1/ptm/m/it/10 str = Underfull \hbox (badness 10000) in paragraph at lines 2970--2970 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2970--2970 \T1/ptm/m/it/10 pa-ram-e- Underfull \hbox (badness 10000) in paragraph at lines 2970--2970 \T1/ptm/m/it/10 tory>\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2970--2970 \T1/ptm/m/it/10 En-abled: Underfull \hbox (badness 10000) in paragraph at lines 2970--2970 \T1/ptm/m/it/10 bool Underfull \hbox (badness 10000) in paragraph at lines 2970--2970 \T1/ptm/m/it/10 = True\T1/ptm/m/n/10 , Overfull \hbox (24.5943pt too wide) in paragraph at lines 2970--2970 \T1/ptm/m/it/10 Pretty_Format: Underfull \hbox (badness 10000) in paragraph at lines 2970--2970 \T1/ptm/m/it/10 bool = [48] Underfull \hbox (badness 10000) in paragraph at lines 2995--2995 []\T1/ptm/m/it/10 class_name: str = Underfull \hbox (badness 10000) in paragraph at lines 2995--2995 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pa-ram-e-ters: Underfull \hbox (badness 6236) in paragraph at lines 3043--3043 []\T1/ptm/m/it/10 class_name: str = Underfull \hbox (badness 10000) in paragraph at lines 3043--3043 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pa-ram-e-ters: Underfull \hbox (badness 10000) in paragraph at lines 3043--3043 \T1/ptm/m/it/10 dict = \T1/ptm/m/n/10 , [49] Underfull \hbox (badness 10000) in paragraph at lines 3067--3067 []\T1/ptm/m/it/10 class_name: str Underfull \hbox (badness 7291) in paragraph at lines 3067--3067 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pa-ram- Underfull \hbox (badness 10000) in paragraph at lines 3067--3067 \T1/ptm/m/it/10 e-ters: dict = Underfull \hbox (badness 10000) in paragraph at lines 3067--3067 \T1/ptm/m/it/10 \T1/ptm/m/n/10 , \T1/ptm/m/it/10 En- Underfull \hbox (badness 10000) in paragraph at lines 3067--3067 \T1/ptm/m/it/10 Pretty_Format: Underfull \hbox (badness 10000) in paragraph at lines 3096--3096 []\T1/ptm/m/it/10 class_name: Underfull \hbox (badness 10000) in paragraph at lines 3096--3096 \T1/ptm/m/it/10 pa-ram-e- Underfull \hbox (badness 10000) in paragraph at lines 3096--3096 \T1/ptm/m/it/10 \T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3096--3096 \T1/ptm/m/it/10 En-abled: Overfull \hbox (6.5943pt too wide) in paragraph at lines 3096--3096 \T1/ptm/m/it/10 Pretty_Format: Overfull \hbox (13.2345pt too wide) in paragraph at lines 3140--3140 []\T1/ptm/m/it/10 class_name: Underfull \hbox (badness 10000) in paragraph at lines 3140--3140 \T1/ptm/m/it/10 str = Underfull \hbox (badness 10000) in paragraph at lines 3140--3140 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3140--3140 \T1/ptm/m/it/10 pa-ram-e- Underfull \hbox (badness 10000) in paragraph at lines 3140--3140 \T1/ptm/m/it/10 tory>\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3140--3140 \T1/ptm/m/it/10 En-abled: Underfull \hbox (badness 10000) in paragraph at lines 3140--3140 \T1/ptm/m/it/10 bool Underfull \hbox (badness 10000) in paragraph at lines 3140--3140 \T1/ptm/m/it/10 = True\T1/ptm/m/n/10 , Overfull \hbox (24.5943pt too wide) in paragraph at lines 3140--3140 \T1/ptm/m/it/10 Pretty_Format: Underfull \hbox (badness 10000) in paragraph at lines 3140--3140 \T1/ptm/m/it/10 bool = [50] Underfull \hbox (badness 10000) in paragraph at lines 3164--3164 []\T1/ptm/m/it/10 class_name: Underfull \hbox (badness 10000) in paragraph at lines 3164--3164 \T1/ptm/m/it/10 str = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3164--3164 \T1/ptm/m/it/10 pa-ram-e-ters: Underfull \hbox (badness 10000) in paragraph at lines 3164--3164 \T1/ptm/m/it/10 dict = \T1/ptm/m/n/10 , \T1/ptm/m/it/10 En-abled: Underfull \hbox (badness 10000) in paragraph at lines 3164--3164 \T1/ptm/m/it/10 bool = True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3164--3164 \T1/ptm/m/it/10 Pretty_Format: Overfull \hbox (67.2345pt too wide) in paragraph at lines 3187--3187 []\T1/ptm/m/it/10 class_name: Overfull \hbox (27.80469pt too wide) in paragraph at lines 3187--3187 \T1/ptm/m/it/10 str Overfull \hbox (23.99501pt too wide) in paragraph at lines 3187--3187 \T1/ptm/m/it/10 = Overfull \hbox (40.85487pt too wide) in paragraph at lines 3187--3187 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (30.57497pt too wide) in paragraph at lines 3187--3187 \T1/ptm/m/it/10 pa- Overfull \hbox (36.53493pt too wide) in paragraph at lines 3187--3187 \T1/ptm/m/it/10 ram- Overfull \hbox (25.01491pt too wide) in paragraph at lines 3187--3187 \T1/ptm/m/it/10 e- Overfull \hbox (35.4746pt too wide) in paragraph at lines 3187--3187 \T1/ptm/m/it/10 ters: Overfull \hbox (32.24474pt too wide) in paragraph at lines 3187--3187 \T1/ptm/m/it/10 dict Overfull \hbox (23.99501pt too wide) in paragraph at lines 3187--3187 \T1/ptm/m/it/10 = Overfull \hbox (39.5448pt too wide) in paragraph at lines 3187--3187 \T1/ptm/m/it/10 \T1/ptm/m/n/10 , Overfull \hbox (31.68495pt too wide) in paragraph at lines 3187--3187 \T1/ptm/m/it/10 En- Overfull \hbox (42.7948pt too wide) in paragraph at lines 3187--3187 \T1/ptm/m/it/10 abled: Overfull \hbox (35.0249pt too wide) in paragraph at lines 3187--3187 \T1/ptm/m/it/10 bool Overfull \hbox (23.99501pt too wide) in paragraph at lines 3187--3187 \T1/ptm/m/it/10 = Overfull \hbox (38.08485pt too wide) in paragraph at lines 3187--3187 \T1/ptm/m/it/10 True\T1/ptm/m/n/10 , Overfull \hbox (78.5943pt too wide) in paragraph at lines 3187--3187 \T1/ptm/m/it/10 Pretty_Format: Overfull \hbox (35.0249pt too wide) in paragraph at lines 3187--3187 \T1/ptm/m/it/10 bool Overfull \hbox (23.99501pt too wide) in paragraph at lines 3187--3187 \T1/ptm/m/it/10 = Overfull \hbox (41.58485pt too wide) in paragraph at lines 3187--3187 \T1/ptm/m/it/10 True\T1/pcr/m/n/10 ) [51] Underfull \hbox (badness 10000) in paragraph at lines 3215--3215 []\T1/ptm/m/it/10 class_name: str Underfull \hbox (badness 7291) in paragraph at lines 3215--3215 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pa-ram- Underfull \hbox (badness 10000) in paragraph at lines 3215--3215 \T1/ptm/m/it/10 e-ters: dict = Underfull \hbox (badness 10000) in paragraph at lines 3215--3215 \T1/ptm/m/it/10 \T1/ptm/m/n/10 , \T1/ptm/m/it/10 En- Underfull \hbox (badness 10000) in paragraph at lines 3215--3215 \T1/ptm/m/it/10 Pretty_Format: Overfull \hbox (37.2345pt too wide) in paragraph at lines 3239--3239 []\T1/ptm/m/it/10 class_name: Underfull \hbox (badness 10000) in paragraph at lines 3239--3239 \T1/ptm/m/it/10 str Underfull \hbox (badness 10000) in paragraph at lines 3239--3239 \T1/ptm/m/it/10 = Overfull \hbox (10.85487pt too wide) in paragraph at lines 3239--3239 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (0.57497pt too wide) in paragraph at lines 3239--3239 \T1/ptm/m/it/10 pa- Overfull \hbox (6.53493pt too wide) in paragraph at lines 3239--3239 \T1/ptm/m/it/10 ram- Underfull \hbox (badness 10000) in paragraph at lines 3239--3239 \T1/ptm/m/it/10 e- Overfull \hbox (5.4746pt too wide) in paragraph at lines 3239--3239 \T1/ptm/m/it/10 ters: Overfull \hbox (2.24474pt too wide) in paragraph at lines 3239--3239 \T1/ptm/m/it/10 dict Underfull \hbox (badness 10000) in paragraph at lines 3239--3239 \T1/ptm/m/it/10 = Overfull \hbox (9.5448pt too wide) in paragraph at lines 3239--3239 \T1/ptm/m/it/10 \T1/ptm/m/n/10 , Overfull \hbox (1.68495pt too wide) in paragraph at lines 3239--3239 \T1/ptm/m/it/10 En- Overfull \hbox (12.7948pt too wide) in paragraph at lines 3239--3239 \T1/ptm/m/it/10 abled: Overfull \hbox (5.0249pt too wide) in paragraph at lines 3239--3239 \T1/ptm/m/it/10 bool Underfull \hbox (badness 10000) in paragraph at lines 3239--3239 \T1/ptm/m/it/10 = Overfull \hbox (8.08485pt too wide) in paragraph at lines 3239--3239 \T1/ptm/m/it/10 True\T1/ptm/m/n/10 , Overfull \hbox (48.5943pt too wide) in paragraph at lines 3239--3239 \T1/ptm/m/it/10 Pretty_Format: Overfull \hbox (5.0249pt too wide) in paragraph at lines 3239--3239 \T1/ptm/m/it/10 bool Underfull \hbox (badness 10000) in paragraph at lines 3239--3239 \T1/ptm/m/it/10 = Overfull \hbox (11.58485pt too wide) in paragraph at lines 3239--3239 \T1/ptm/m/it/10 True\T1/pcr/m/n/10 ) [52] Underfull \hbox (badness 10000) in paragraph at lines 3292--3292 []\T1/ptm/m/it/10 config\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/ 10 , Overfull \hbox (24.52415pt too wide) in paragraph at lines 3292--3292 \T1/ptm/m/it/10 var_gene_randomness_type: Underfull \hbox (badness 10000) in paragraph at lines 3292--3292 [][]\T1/ptm/m/it/10 str[][] = Underfull \hbox (badness 10000) in paragraph at lines 3293--3295 \T1/ptm/m/n/10 Sets up the de-fault pa-ram-e-ters for par-a-site ge-net-ics sim -u-la-tions Malaria_Model = [53] [54] [55] [56] Underfull \hbox (badness 10000) in paragraph at lines 3667--3667 []\T1/ptm/m/it/10 config\T1/ptm/m/n/10 , \T1/ptm/m/it/10 man-i-fest\T1/ptm/m/n/ 10 , \T1/ptm/m/it/10 in-sec- Underfull \hbox (badness 6675) in paragraph at lines 3667--3667 \T1/ptm/m/it/10 ti-cide_name: [][]str[][] = \TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , Underfull \hbox (badness 5939) in paragraph at lines 3667--3667 \T1/ptm/m/it/10 species: [][]str[][] = \TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , \T1/ ptm/m/it/10 al- Underfull \hbox (badness 6047) in paragraph at lines 3667--3667 \T1/ptm/m/it/10 block-ing: [][]float[][] = 1.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3667--3667 \T1/ptm/m/it/10 pelling: [][]float[][] = 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emodpy_malaria.interventions.outbreakindividualmalariagenetics \T1/ptm/m/n/10 , Overfull \hbox (144.6225pt too wide) in paragraph at lines 3849--3850 []\T1/pcr/m/n/10 emodpy_malaria.interventions.outbreakindividualmalariavargenes \T1/ptm/m/n/10 , Overfull \hbox (36.6225pt too wide) in paragraph at lines 3850--3851 []\T1/pcr/m/n/10 emodpy_malaria.interventions.outdoorrestkill\T1/ptm/m/n/10 , Overfull \hbox (24.6225pt too wide) in paragraph at lines 3851--3852 []\T1/pcr/m/n/10 emodpy_malaria.interventions.spacespraying\T1/ptm/m/n/10 , Overfull \hbox (0.6225pt too wide) in paragraph at lines 3852--3853 []\T1/pcr/m/n/10 emodpy_malaria.interventions.sugartrap\T1/ptm/m/n/10 , Overfull \hbox (48.6225pt too wide) in paragraph at lines 3853--3854 []\T1/pcr/m/n/10 emodpy_malaria.interventions.treatment_seeking\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3854--3855 []\T1/pcr/m/n/10 emodpy_malaria.interventions.udbednet\T1/ptm/m/n/10 , [61] (./institute-for-disease-modeling-emodpy-malaria.ind [62] Overfull \hbox (50.13988pt too wide) in paragraph at lines 8--10 []\T1/pcr/m/n/10 add() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule emodpy_malari a.interventions.treatment_seeking\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 10--12 []\T1/pcr/m/n/10 add_alleles() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 12--14 []\T1/pcr/m/n/10 add_diagnostic_survey() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod -ule Underfull \hbox (badness 10000) in paragraph at lines 12--14 \T1/ptm/m/it/10 emodpy_malaria.interventions.diag_survey\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 14--16 []\T1/pcr/m/n/10 add_drug_campaign() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (4.27083pt too wide) in paragraph at lines 14--16 \T1/ptm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 16--18 []\T1/pcr/m/n/10 add_drug_resistance() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 18--20 []\T1/pcr/m/n/10 add_drug_status_report() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 20--22 []\T1/pcr/m/n/10 add_fMDA() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (4.27083pt too wide) in paragraph at lines 20--22 \T1/ptm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 24--26 []\T1/pcr/m/n/10 add_insecticide_resistance() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 i n mod-ule Underfull \hbox (badness 10000) in paragraph at lines 26--28 []\T1/pcr/m/n/10 add_insecticide_resistance() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 i n mod-ule Underfull \hbox (badness 10000) in paragraph at lines 30--32 []\T1/pcr/m/n/10 add_malaria_patient_json_report() \T1/ptm/m/n/10 (\T1/ptm/m/it /10 in Underfull \hbox (badness 10000) in paragraph at lines 32--34 []\T1/pcr/m/n/10 add_malaria_sql_report() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 34--36 []\T1/pcr/m/n/10 add_malaria_summary_report() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 i n mod-ule Underfull \hbox (badness 10000) in paragraph at lines 38--40 []\T1/pcr/m/n/10 add_malaria_transmission_report() \T1/ptm/m/n/10 (\T1/ptm/m/it /10 in Underfull \hbox (badness 10000) in paragraph at lines 40--42 []\T1/pcr/m/n/10 add_MDA() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (4.27083pt too wide) in paragraph at lines 40--42 \T1/ptm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 42--44 []\T1/pcr/m/n/10 add_MSAT() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (4.27083pt too wide) in paragraph at lines 42--44 \T1/ptm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 44--46 []\T1/pcr/m/n/10 add_mutation() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 46--48 []\T1/pcr/m/n/10 add_report_event_counter() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (52.1225pt too wide) in paragraph at lines 50--52 []\T1/pcr/m/n/10 add_report_node_demographics_malaria_genetics() Underfull \hbox (badness 10000) in paragraph at lines 52--54 []\T1/pcr/m/n/10 add_report_vector_genetics() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 i n mod-ule Underfull \hbox (badness 10000) in paragraph at lines 56--58 []\T1/pcr/m/n/10 add_report_vector_stats() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in m od-ule Overfull \hbox (22.1225pt too wide) in paragraph at lines 58--60 []\T1/pcr/m/n/10 add_report_vector_stats_malaria_genetics() Underfull \hbox (badness 10000) in paragraph at lines 60--62 []\T1/pcr/m/n/10 add_rfMDA() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (4.27083pt too wide) in paragraph at lines 60--62 \T1/ptm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 62--64 []\T1/pcr/m/n/10 add_rfMSAT() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (4.27083pt too wide) in paragraph at lines 62--64 \T1/ptm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 64--66 []\T1/pcr/m/n/10 add_spatial_report_malaria_filtered() Underfull \hbox (badness 10000) in paragraph at lines 66--68 []\T1/pcr/m/n/10 add_species() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 68--70 []\T1/pcr/m/n/10 add_species() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 70--72 []\T1/pcr/m/n/10 add_species_drivers() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 72--73 []\T1/pcr/m/n/10 add_trait() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 73--75 []\T1/pcr/m/n/10 add_vector_habitat_report() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 75--77 []\T1/pcr/m/n/10 AntimalarialDrug() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 75--77 \T1/ptm/m/it/10 emodpy_malaria.interventions.common\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 77--79 []\T1/pcr/m/n/10 AntimalarialDrug() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 82--84 []\T1/pcr/m/n/10 BasicBednet() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule [63] Underfull \hbox (badness 10000) in paragraph at lines 84--86 []\T1/pcr/m/n/10 Bednet() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (59.0599pt too wide) in paragraph at lines 89--91 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.MalariaImmunityReport Overfull \hbox (72.70978pt too wide) in paragraph at lines 91--93 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.MalariaPatientJSONReport Overfull \hbox (34.07018pt too wide) in paragraph at lines 93--95 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.MalariaSqlReport Overfull \hbox (59.06006pt too wide) in paragraph at lines 95--97 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.MalariaSummaryReport Overfull \hbox (79.58981pt too wide) in paragraph at lines 97--99 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.MalariaSurveyJSONAnalyzer Overfull \hbox (34.07019pt too wide) in paragraph at lines 99--101 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.ReportDrugStatus Overfull \hbox (44.06006pt too wide) in paragraph at lines 101--103 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.ReportEventCounter Overfull \hbox (93.57004pt too wide) in paragraph at lines 103--105 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.ReportHumanMigrationTracking Overfull \hbox (68.25012pt too wide) in paragraph at lines 105--107 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.ReportNodeDemographics Overfull \hbox (136.01923pt too wide) in paragraph at lines 107--109 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.ReportNodeDemographicsMalariaGenetics Overfull \hbox (125.03925pt too wide) in paragraph at lines 109--111 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.ReportSimpleMalariaTransmissionJSON Overfull \hbox (49.04977pt too wide) in paragraph at lines 111--113 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.ReportVectorGenetics Overfull \hbox (54.46992pt too wide) in paragraph at lines 113--115 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.ReportVectorMigration Overfull \hbox (33.50998pt too wide) in paragraph at lines 115--117 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.ReportVectorStats Overfull \hbox (101.27908pt too wide) in paragraph at lines 117--119 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.ReportVectorStatsMalariaGenetics Overfull \hbox (81.02942pt too wide) in paragraph at lines 119--121 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.SpatialReportMalariaFiltered Overfull \hbox (44.61995pt too wide) in paragraph at lines 121--123 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.VectorHabitatReport Underfull \hbox (badness 10000) in paragraph at lines 126--128 []\T1/pcr/m/n/10 drug_configs_from_code() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule Overfull \hbox (4.27083pt too wide) in paragraph at lines 126--128 \T1/ptm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/ptm/m/n/10 ), Overfull \hbox (52.1225pt too wide) in paragraph at lines 135--136 []\T1/pcr/m/n/10 emodpy_malaria.demographics.MalariaDemographics Overfull \hbox (10.1225pt too wide) in paragraph at lines 143--144 []\T1/pcr/m/n/10 emodpy_malaria.interventions.diag_survey Overfull \hbox (22.1225pt too wide) in paragraph at lines 147--148 []\T1/pcr/m/n/10 emodpy_malaria.interventions.drug_campaign Overfull \hbox (4.1225pt too wide) in paragraph at lines 153--154 []\T1/pcr/m/n/10 emodpy_malaria.interventions.ivermectin Overfull \hbox (34.1225pt too wide) in paragraph at lines 155--156 []\T1/pcr/m/n/10 emodpy_malaria.interventions.mosquitorelease Overfull \hbox (142.1225pt too wide) in paragraph at lines 157--158 []\T1/pcr/m/n/10 emodpy_malaria.interventions.outbreakindividualmalariagenetics Overfull \hbox (142.1225pt too wide) in paragraph at lines 159--160 []\T1/pcr/m/n/10 emodpy_malaria.interventions.outbreakindividualmalariavargenes Overfull \hbox (34.1225pt too wide) in paragraph at lines 161--162 []\T1/pcr/m/n/10 emodpy_malaria.interventions.outdoorrestkill Overfull \hbox (22.1225pt too wide) in paragraph at lines 163--164 []\T1/pcr/m/n/10 emodpy_malaria.interventions.spacespraying Overfull \hbox (46.1225pt too wide) in paragraph at lines 167--168 []\T1/pcr/m/n/10 emodpy_malaria.interventions.treatment_seeking Underfull \hbox (badness 10000) in paragraph at lines 182--184 []\T1/pcr/m/n/10 fmda_cfg() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (4.27083pt too wide) in paragraph at lines 182--184 \T1/ptm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 184--186 []\T1/pcr/m/n/10 from_params() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (36.54083pt too wide) in paragraph at lines 184--186 \T1/ptm/m/it/10 emodpy_malaria.demographics.MalariaDemographics\T1/ptm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 186--188 []\T1/pcr/m/n/10 from_pop_csv() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (36.54083pt too wide) in paragraph at lines 186--188 \T1/ptm/m/it/10 emodpy_malaria.demographics.MalariaDemographics\T1/ptm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 188--190 []\T1/pcr/m/n/10 from_template_node() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ul e Overfull \hbox (36.54083pt too wide) in paragraph at lines 188--190 \T1/ptm/m/it/10 emodpy_malaria.demographics.MalariaDemographics\T1/ptm/m/n/10 ) , [64] Underfull \hbox (badness 10000) in paragraph at lines 193--195 []\T1/pcr/m/n/10 get_drug_params() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 195--197 []\T1/pcr/m/n/10 get_file_from_http() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 197--199 []\T1/pcr/m/n/10 get_species_params() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 202--204 []\T1/pcr/m/n/10 InputEIR() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 202--204 \T1/ptm/m/it/10 emodpy_malaria.interventions.inputeir\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 204--206 []\T1/pcr/m/n/10 IRSHousingModification() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 206--208 []\T1/pcr/m/n/10 Ivermectin() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 206--208 \T1/ptm/m/it/10 emodpy_malaria.interventions.ivermectin\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 211--213 []\T1/pcr/m/n/10 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\T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 363--365 []\T1/pcr/m/n/10 set_team_drug_params() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod- ule Underfull \hbox (badness 10000) in paragraph at lines 365--367 []\T1/pcr/m/n/10 SpaceSpraying() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 365--367 \T1/ptm/m/it/10 emodpy_malaria.interventions.spacespraying\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 367--369 []\T1/pcr/m/n/10 SpatialReportMalariaFiltered \T1/ptm/m/n/10 (\T1/ptm/m/it/10 c lass in Underfull \hbox (badness 10000) in paragraph at lines 369--371 []\T1/pcr/m/n/10 SugarTrap() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 369--371 \T1/ptm/m/it/10 emodpy_malaria.interventions.sugartrap\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 374--376 []\T1/pcr/m/n/10 UDBednet() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 374--376 \T1/ptm/m/it/10 emodpy_malaria.interventions.udbednet\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 379--381 []\T1/pcr/m/n/10 VectorHabitatReport \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in [66]) (./institute-for-disease-modeling-emodpy-malaria.aux) ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on institute-for-disease-modeling-emodpy-malaria.pdf (70 pages, 287953 bytes). 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