Read the Docs build information
Build id: 672906
Project: tiledb-inc-tiledb-py
Version: latest
Commit: df5356a6a86be0bd65a55a332d0d466ac411c64b
Date: 2021-07-08T17:22:43.824847Z
State: finished
Success: False


[rtd-command-info] start-time: 2021-07-08T17:22:45.208948Z, end-time: 2021-07-08T17:22:47.225857Z, duration: 2, exit-code: 0
git clone --no-single-branch --depth 50 https://github.com/TileDB-Inc/TileDB-Py.git .
Cloning into '.'...

[rtd-command-info] start-time: 2021-07-08T17:22:47.402437Z, end-time: 2021-07-08T17:22:47.487851Z, duration: 0, exit-code: 0
git checkout --force origin/dev
Note: checking out 'origin/dev'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by performing another checkout.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -b with the checkout command again. Example:

  git checkout -b <new-branch-name>

HEAD is now at df5356a Addition of `Array.timestamp_range`; Deprecate `Array.timestamp` (#616)

[rtd-command-info] start-time: 2021-07-08T17:22:47.593652Z, end-time: 2021-07-08T17:22:47.661276Z, duration: 0, exit-code: 0
git clean -d -f -f


[rtd-command-info] start-time: 2021-07-08T17:22:47.759575Z, end-time: 2021-07-08T17:22:47.825444Z, duration: 0, exit-code: 0
git rev-parse HEAD
df5356a6a86be0bd65a55a332d0d466ac411c64b

[rtd-command-info] start-time: 2021-07-08T17:22:48.890274Z, end-time: 2021-07-08T17:23:08.880197Z, duration: 19, exit-code: 0
python3.7 -mvirtualenv 
Using base prefix '/home/docs/.pyenv/versions/3.7.9'
New python executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/bin/python3.7
Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/bin/python
Installing setuptools, pip, wheel...
done.

[rtd-command-info] start-time: 2021-07-08T17:23:08.998788Z, end-time: 2021-07-08T17:23:10.348586Z, duration: 1, exit-code: 0
python -m pip install --upgrade --no-cache-dir pip setuptools
Requirement already satisfied: pip in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages (21.1.3)
Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages (57.1.0)

[rtd-command-info] start-time: 2021-07-08T17:23:10.464174Z, end-time: 2021-07-08T17:23:18.854340Z, duration: 8, exit-code: 0
python -m pip install --upgrade --no-cache-dir mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<2.2
Collecting mock==1.0.1
  Downloading mock-1.0.1.zip (861 kB)
Collecting pillow==5.4.1
  Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB)
Collecting alabaster!=0.7.5,<0.8,>=0.7
  Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB)
Collecting commonmark==0.8.1
  Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB)
Collecting recommonmark==0.5.0
  Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB)
Collecting sphinx<2
  Downloading Sphinx-1.8.5-py2.py3-none-any.whl (3.1 MB)
Collecting sphinx-rtd-theme<0.5
  Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB)
Collecting readthedocs-sphinx-ext<2.2
  Downloading readthedocs_sphinx_ext-2.1.4-py2.py3-none-any.whl (29 kB)
Collecting future
  Downloading future-0.18.2.tar.gz (829 kB)
Collecting docutils>=0.11
  Downloading docutils-0.17.1-py2.py3-none-any.whl (575 kB)
Collecting Pygments>=2.0
  Downloading Pygments-2.9.0-py3-none-any.whl (1.0 MB)
Collecting imagesize
  Downloading imagesize-1.2.0-py2.py3-none-any.whl (4.8 kB)
Collecting snowballstemmer>=1.1
  Downloading snowballstemmer-2.1.0-py2.py3-none-any.whl (93 kB)
Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages (from sphinx<2) (57.1.0)
Collecting packaging
  Downloading packaging-21.0-py3-none-any.whl (40 kB)
Collecting sphinxcontrib-websupport
  Downloading sphinxcontrib_websupport-1.2.4-py2.py3-none-any.whl (39 kB)
Collecting Jinja2>=2.3
  Downloading Jinja2-3.0.1-py3-none-any.whl (133 kB)
Collecting six>=1.5
  Downloading six-1.16.0-py2.py3-none-any.whl (11 kB)
Collecting babel!=2.0,>=1.3
  Downloading Babel-2.9.1-py2.py3-none-any.whl (8.8 MB)
Collecting requests>=2.0.0
  Downloading requests-2.25.1-py2.py3-none-any.whl (61 kB)
Collecting pytz>=2015.7
  Downloading pytz-2021.1-py2.py3-none-any.whl (510 kB)
Collecting MarkupSafe>=2.0
  Downloading MarkupSafe-2.0.1-cp37-cp37m-manylinux2010_x86_64.whl (31 kB)
Collecting idna<3,>=2.5
  Downloading idna-2.10-py2.py3-none-any.whl (58 kB)
Collecting chardet<5,>=3.0.2
  Downloading chardet-4.0.0-py2.py3-none-any.whl (178 kB)
Collecting certifi>=2017.4.17
  Downloading certifi-2021.5.30-py2.py3-none-any.whl (145 kB)
Collecting urllib3<1.27,>=1.21.1
  Downloading urllib3-1.26.6-py2.py3-none-any.whl (138 kB)
Collecting pyparsing>=2.0.2
  Downloading pyparsing-2.4.7-py2.py3-none-any.whl (67 kB)
Collecting sphinxcontrib-serializinghtml
  Downloading sphinxcontrib_serializinghtml-1.1.5-py2.py3-none-any.whl (94 kB)
Building wheels for collected packages: mock, future
  Building wheel for mock (setup.py): started
  Building wheel for mock (setup.py): finished with status 'done'
  Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23772 sha256=e50c24962c1943b034ca19bdbbbaee6f89efeb28ec05276cf5884ff3d5ed6fae
  Stored in directory: /tmp/pip-ephem-wheel-cache-b6lza9gz/wheels/7a/94/b1/0fdc5339a5bd487a5cc15421ec200d9ba3e2aa7190e4a727f1
  Building wheel for future (setup.py): started
  Building wheel for future (setup.py): finished with status 'done'
  Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491070 sha256=232a933eea5ea85ac7f9a85329e1eb2cdcf0c4bcc3ebcb7394dae1aed0ab7016
  Stored in directory: /tmp/pip-ephem-wheel-cache-b6lza9gz/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0
Successfully built mock future
Installing collected packages: urllib3, sphinxcontrib-serializinghtml, pytz, pyparsing, MarkupSafe, idna, chardet, certifi, sphinxcontrib-websupport, snowballstemmer, six, requests, Pygments, packaging, Jinja2, imagesize, future, docutils, babel, alabaster, sphinx, commonmark, sphinx-rtd-theme, recommonmark, readthedocs-sphinx-ext, pillow, mock
Successfully installed Jinja2-3.0.1 MarkupSafe-2.0.1 Pygments-2.9.0 alabaster-0.7.12 babel-2.9.1 certifi-2021.5.30 chardet-4.0.0 commonmark-0.8.1 docutils-0.17.1 future-0.18.2 idna-2.10 imagesize-1.2.0 mock-1.0.1 packaging-21.0 pillow-5.4.1 pyparsing-2.4.7 pytz-2021.1 readthedocs-sphinx-ext-2.1.4 recommonmark-0.5.0 requests-2.25.1 six-1.16.0 snowballstemmer-2.1.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-serializinghtml-1.1.5 sphinxcontrib-websupport-1.2.4 urllib3-1.26.6

[rtd-command-info] start-time: 2021-07-08T17:23:18.968305Z, end-time: 2021-07-08T17:23:23.860518Z, duration: 4, exit-code: 0
python -m pip install --exists-action=w --no-cache-dir -r requirements_dev.txt
Ignoring contextvars: markers 'python_version < "3.7"' don't match your environment
Ignoring dataclasses: markers 'python_version < "3.7"' don't match your environment
Collecting numpy>=1.16.5
  Downloading numpy-1.21.0-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (15.7 MB)
Collecting cython>=0.27
  Downloading Cython-0.29.23-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB)
Collecting pybind11>=2.6.2
  Downloading pybind11-2.6.2-py2.py3-none-any.whl (191 kB)
Requirement already satisfied: setuptools>=18.0 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages (from -r requirements_dev.txt (line 7)) (57.1.0)
Collecting setuptools_scm>=1.5.4
  Downloading setuptools_scm-6.0.1-py3-none-any.whl (27 kB)
Requirement already satisfied: wheel>=0.30 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages (from -r requirements_dev.txt (line 9)) (0.36.2)
Installing collected packages: setuptools-scm, pybind11, numpy, cython
Successfully installed cython-0.29.23 numpy-1.21.0 pybind11-2.6.2 setuptools-scm-6.0.1

[rtd-command-info] start-time: 2021-07-08T17:23:23.976490Z, end-time: 2021-07-08T17:23:27.744474Z, duration: 3, exit-code: 1
python ./setup.py install --force
setup.py sys.argv is:  ['./setup.py', 'install', '--force']
TILEDB_PATH from env: ''
libtiledb_exists checking 'library_dirs': []
libtiledb_exists found: 'None'
running install
running bdist_egg
GNU Make 4.1
Built for x86_64-pc-linux-gnu
Copyright (C) 1988-2014 Free Software Foundation, Inc.
License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>
This is free software: you are free to change and redistribute it.
There is NO WARRANTY, to the extent permitted by law.
ext_modules:  [<setuptools.extension.Extension('tiledb.libtiledb') at 0x7f4534254dd0>, <setuptools.extension.Extension('tiledb.core') at 0x7f4534254c90>, <setuptools.extension.Extension('tiledb._fragment') at 0x7f4531e4e150>, <setuptools.extension.Extension('tiledb._query_condition') at 0x7f4531e4e6d0>]
tiledb_ext:  <setuptools.extension.Extension('tiledb.libtiledb') at 0x7f4534254dd0>
core_ext:  <setuptools.extension.Extension('tiledb.core') at 0x7f4534254c90>
fragment_ext:  <setuptools.extension.Extension('tiledb._fragment') at 0x7f4531e4e150>
query_condition_ext:  <setuptools.extension.Extension('tiledb._query_condition') at 0x7f4531e4e6d0>
tiledb_ext.library_dirs:  []
libtiledb_exists checking 'library_dirs': []
libtiledb_exists found: 'None'
Downloading TileDB package from 2.3.1...
Building libtiledb in directory /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.1/build...
CMake configure command: ['cmake', '-DCMAKE_INSTALL_PREFIX=/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.1/dist', '-DTILEDB_TESTS=OFF', '-DTILEDB_S3=ON', '-DTILEDB_WERROR=OFF', '-DTILEDB_HDFS=ON', '-DTILEDB_INSTALL_LIBDIR=lib', '-DTILEDB_CPP_API=ON', '-DTILEDB_LOG_OUTPUT_ON_FAILURE=ON', '-DTILEDB_FORCE_ALL_DEPS:BOOL=OFF', '-DTILEDB_SERIALIZATION:BOOL=OFF', '-DCMAKE_BUILD_TYPE=Release', '/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.1']
/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages/setuptools_scm/git.py:88: UserWarning: "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest" is shallow and may cause errors
  warnings.warn(f'"{wd.path}" is shallow and may cause errors')
error: [Errno 2] No such file or directory: 'cmake': 'cmake'