Read the Docs build information
Build id: 668966
Project: tiledb-inc-tiledb-py
Version: latest
Commit: de494201944b43ededb9267d5f762b8c84460b05
Date: 2021-07-02T12:30:12.455369Z
State: finished
Success: False


[rtd-command-info] start-time: 2021-07-02T12:30:46.669253Z, end-time: 2021-07-02T12:30:48.103669Z, duration: 1, exit-code: 0
git clone --no-single-branch --depth 50 https://github.com/TileDB-Inc/TileDB-Py.git .
Cloning into '.'...

[rtd-command-info] start-time: 2021-07-02T12:30:48.293118Z, end-time: 2021-07-02T12:30:48.379966Z, duration: 0, exit-code: 0
git checkout --force origin/dev
Note: checking out 'origin/dev'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by performing another checkout.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -b with the checkout command again. Example:

  git checkout -b <new-branch-name>

HEAD is now at de49420 Use CIBW To Build Release Wheels on Linux (#613)

[rtd-command-info] start-time: 2021-07-02T12:30:48.517322Z, end-time: 2021-07-02T12:30:48.582716Z, duration: 0, exit-code: 0
git clean -d -f -f


[rtd-command-info] start-time: 2021-07-02T12:30:48.699758Z, end-time: 2021-07-02T12:30:48.765893Z, duration: 0, exit-code: 0
git rev-parse HEAD
de494201944b43ededb9267d5f762b8c84460b05

[rtd-command-info] start-time: 2021-07-02T12:30:49.765483Z, end-time: 2021-07-02T12:30:53.881095Z, duration: 4, exit-code: 0
python3.7 -mvirtualenv 
Using base prefix '/home/docs/.pyenv/versions/3.7.9'
New python executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/bin/python3.7
Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/bin/python
Installing setuptools, pip, wheel...
done.

[rtd-command-info] start-time: 2021-07-02T12:30:53.992448Z, end-time: 2021-07-02T12:30:55.096434Z, duration: 1, exit-code: 0
python -m pip install --upgrade --no-cache-dir pip setuptools
Requirement already satisfied: pip in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages (21.1.3)
Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages (57.0.0)

[rtd-command-info] start-time: 2021-07-02T12:30:55.226587Z, end-time: 2021-07-02T12:31:03.659402Z, duration: 8, exit-code: 0
python -m pip install --upgrade --no-cache-dir mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<2.2
Collecting mock==1.0.1
  Downloading mock-1.0.1.zip (861 kB)
Collecting pillow==5.4.1
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Collecting alabaster!=0.7.5,<0.8,>=0.7
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Collecting sphinx<2
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Collecting future
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Collecting docutils>=0.11
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Collecting requests>=2.0.0
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Collecting packaging
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Collecting Pygments>=2.0
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Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages (from sphinx<2) (57.0.0)
Collecting pytz>=2015.7
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Collecting certifi>=2017.4.17
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Collecting sphinxcontrib-serializinghtml
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Building wheels for collected packages: mock, future
  Building wheel for mock (setup.py): started
  Building wheel for mock (setup.py): finished with status 'done'
  Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23772 sha256=d2ee235e825725a95b64bca178c5f62211d392c191e7d1234335f7231c6b65e9
  Stored in directory: /tmp/pip-ephem-wheel-cache-h1ikqoby/wheels/7a/94/b1/0fdc5339a5bd487a5cc15421ec200d9ba3e2aa7190e4a727f1
  Building wheel for future (setup.py): started
  Building wheel for future (setup.py): finished with status 'done'
  Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491070 sha256=cda3dfc3483a6cb3bed6e38d088ff400d257d4d08e22a42090f2046d22781824
  Stored in directory: /tmp/pip-ephem-wheel-cache-h1ikqoby/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0
Successfully built mock future
Installing collected packages: urllib3, sphinxcontrib-serializinghtml, pytz, pyparsing, MarkupSafe, idna, chardet, certifi, sphinxcontrib-websupport, snowballstemmer, six, requests, Pygments, packaging, Jinja2, imagesize, future, docutils, babel, alabaster, sphinx, commonmark, sphinx-rtd-theme, recommonmark, readthedocs-sphinx-ext, pillow, mock
Successfully installed Jinja2-3.0.1 MarkupSafe-2.0.1 Pygments-2.9.0 alabaster-0.7.12 babel-2.9.1 certifi-2021.5.30 chardet-4.0.0 commonmark-0.8.1 docutils-0.17.1 future-0.18.2 idna-2.10 imagesize-1.2.0 mock-1.0.1 packaging-20.9 pillow-5.4.1 pyparsing-2.4.7 pytz-2021.1 readthedocs-sphinx-ext-2.1.4 recommonmark-0.5.0 requests-2.25.1 six-1.16.0 snowballstemmer-2.1.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-serializinghtml-1.1.5 sphinxcontrib-websupport-1.2.4 urllib3-1.26.6

[rtd-command-info] start-time: 2021-07-02T12:31:03.766553Z, end-time: 2021-07-02T12:31:08.507666Z, duration: 4, exit-code: 0
python -m pip install --exists-action=w --no-cache-dir -r requirements_dev.txt
Ignoring contextvars: markers 'python_version < "3.7"' don't match your environment
Ignoring dataclasses: markers 'python_version < "3.7"' don't match your environment
Collecting numpy>=1.16.5
  Downloading numpy-1.21.0-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (15.7 MB)
Collecting cython>=0.27
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Collecting pybind11>=2.6.2
  Downloading pybind11-2.6.2-py2.py3-none-any.whl (191 kB)
Requirement already satisfied: setuptools>=18.0 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages (from -r requirements_dev.txt (line 7)) (57.0.0)
Collecting setuptools_scm>=1.5.4
  Downloading setuptools_scm-6.0.1-py3-none-any.whl (27 kB)
Requirement already satisfied: wheel>=0.30 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages (from -r requirements_dev.txt (line 9)) (0.36.2)
Installing collected packages: setuptools-scm, pybind11, numpy, cython
Successfully installed cython-0.29.23 numpy-1.21.0 pybind11-2.6.2 setuptools-scm-6.0.1

[rtd-command-info] start-time: 2021-07-02T12:31:08.619903Z, end-time: 2021-07-02T12:31:11.556152Z, duration: 2, exit-code: 1
python ./setup.py install --force
setup.py sys.argv is:  ['./setup.py', 'install', '--force']
TILEDB_PATH from env: ''
libtiledb_exists checking 'library_dirs': []
libtiledb_exists found: 'None'
running install
running bdist_egg
GNU Make 4.1
Built for x86_64-pc-linux-gnu
Copyright (C) 1988-2014 Free Software Foundation, Inc.
License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>
This is free software: you are free to change and redistribute it.
There is NO WARRANTY, to the extent permitted by law.
ext_modules:  [<setuptools.extension.Extension('tiledb.libtiledb') at 0x7f87a6548d50>, <setuptools.extension.Extension('tiledb.core') at 0x7f87a6548c10>, <setuptools.extension.Extension('tiledb._fragment') at 0x7f87a4142210>, <setuptools.extension.Extension('tiledb._query_condition') at 0x7f87a41427d0>]
tiledb_ext:  <setuptools.extension.Extension('tiledb.libtiledb') at 0x7f87a6548d50>
core_ext:  <setuptools.extension.Extension('tiledb.core') at 0x7f87a6548c10>
fragment_ext:  <setuptools.extension.Extension('tiledb._fragment') at 0x7f87a4142210>
query_condition_ext:  <setuptools.extension.Extension('tiledb._query_condition') at 0x7f87a41427d0>
tiledb_ext.library_dirs:  []
libtiledb_exists checking 'library_dirs': []
libtiledb_exists found: 'None'
Downloading TileDB package from 2.3.1...
Building libtiledb in directory /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.1/build...
CMake configure command: ['cmake', '-DCMAKE_INSTALL_PREFIX=/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.1/dist', '-DTILEDB_TESTS=OFF', '-DTILEDB_S3=ON', '-DTILEDB_WERROR=OFF', '-DTILEDB_HDFS=ON', '-DTILEDB_INSTALL_LIBDIR=lib', '-DTILEDB_CPP_API=ON', '-DTILEDB_LOG_OUTPUT_ON_FAILURE=ON', '-DTILEDB_FORCE_ALL_DEPS:BOOL=OFF', '-DTILEDB_SERIALIZATION:BOOL=OFF', '-DCMAKE_BUILD_TYPE=Release', '/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.3.1']
/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages/setuptools_scm/git.py:88: UserWarning: "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest" is shallow and may cause errors
  warnings.warn(f'"{wd.path}" is shallow and may cause errors')
error: [Errno 2] No such file or directory: 'cmake': 'cmake'