Read the Docs build information Build id: 616755 Project: ucsd-center-for-functional-mri-cfmri-web-rtd Version: latest Commit: 3bac7c25292d49eebaf1f96c7967bd8aac7db9d3 Date: 2021-04-20T21:30:55.671972Z State: finished Success: True [rtd-command-info] start-time: 2021-04-20T21:30:57.121456Z, end-time: 2021-04-20T21:31:09.422687Z, duration: 12, exit-code: 0 git clone --no-single-branch --depth 50 https://bitbucket.org/ucsdcfmri/cfmri_web_rtd.git . Cloning into '.'... 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[rtd-command-info] start-time: 2021-04-20T21:31:09.561252Z, end-time: 2021-04-20T21:31:11.126026Z, duration: 1, exit-code: 0 git checkout --force origin/master Note: checking out 'origin/master'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at 3bac7c2 added a prisma section to the main user site [rtd-command-info] start-time: 2021-04-20T21:31:11.239918Z, end-time: 2021-04-20T21:31:11.305171Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2021-04-20T21:31:15.657237Z, end-time: 2021-04-20T21:31:19.499870Z, duration: 3, exit-code: 0 python3.7 -mvirtualenv Using base prefix '/home/docs/.pyenv/versions/3.7.9' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/ucsd-center-for-functional-mri-cfmri-web-rtd/envs/latest/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/ucsd-center-for-functional-mri-cfmri-web-rtd/envs/latest/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2021-04-20T21:31:19.615443Z, end-time: 2021-04-20T21:31:21.205039Z, duration: 1, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip setuptools Requirement already satisfied: pip in /home/docs/checkouts/readthedocs.org/user_builds/ucsd-center-for-functional-mri-cfmri-web-rtd/envs/latest/lib/python3.7/site-packages (21.0.1) Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/ucsd-center-for-functional-mri-cfmri-web-rtd/envs/latest/lib/python3.7/site-packages (56.0.0) [rtd-command-info] start-time: 2021-04-20T21:31:21.322309Z, end-time: 2021-04-20T21:31:29.924886Z, duration: 8, exit-code: 0 python -m pip install --upgrade --no-cache-dir mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<2.2 Collecting mock==1.0.1 Downloading mock-1.0.1.zip (861 kB) Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.5-py2.py3-none-any.whl (3.1 MB) Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) Collecting readthedocs-sphinx-ext<2.2 Downloading readthedocs_sphinx_ext-2.1.4-py2.py3-none-any.whl (29 kB) Collecting future Downloading future-0.18.2.tar.gz (829 kB) Collecting docutils>=0.11 Downloading docutils-0.17.1-py2.py3-none-any.whl (575 kB) Collecting requests Downloading requests-2.25.1-py2.py3-none-any.whl (61 kB) Collecting Jinja2>=2.9 Downloading Jinja2-2.11.3-py2.py3-none-any.whl (125 kB) Collecting imagesize Downloading imagesize-1.2.0-py2.py3-none-any.whl (4.8 kB) Collecting six>=1.5 Downloading six-1.15.0-py2.py3-none-any.whl (10 kB) Collecting packaging Downloading packaging-20.9-py2.py3-none-any.whl (40 kB) Collecting babel!=2.0,>=1.3 Downloading Babel-2.9.0-py2.py3-none-any.whl (8.8 MB) Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.1.0-py2.py3-none-any.whl (93 kB) Collecting sphinxcontrib-websupport Downloading sphinxcontrib_websupport-1.2.4-py2.py3-none-any.whl (39 kB) Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/ucsd-center-for-functional-mri-cfmri-web-rtd/envs/latest/lib/python3.7/site-packages (from sphinx<2) (56.0.0) Collecting Pygments>=2.0 Downloading Pygments-2.8.1-py3-none-any.whl (983 kB) Collecting pytz>=2015.7 Downloading pytz-2021.1-py2.py3-none-any.whl (510 kB) Collecting MarkupSafe>=0.23 Downloading MarkupSafe-1.1.1-cp37-cp37m-manylinux2010_x86_64.whl (33 kB) Collecting urllib3<1.27,>=1.21.1 Downloading urllib3-1.26.4-py2.py3-none-any.whl (153 kB) Collecting chardet<5,>=3.0.2 Downloading chardet-4.0.0-py2.py3-none-any.whl (178 kB) Collecting certifi>=2017.4.17 Downloading certifi-2020.12.5-py2.py3-none-any.whl (147 kB) Collecting idna<3,>=2.5 Downloading idna-2.10-py2.py3-none-any.whl (58 kB) Collecting pyparsing>=2.0.2 Downloading pyparsing-2.4.7-py2.py3-none-any.whl (67 kB) Collecting sphinxcontrib-serializinghtml Downloading sphinxcontrib_serializinghtml-1.1.4-py2.py3-none-any.whl (89 kB) Building wheels for collected packages: mock, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23755 sha256=d981b04c9f93aac87890f744fa033d2d5b4fb6314f08b7774f802496f115d380 Stored in directory: /tmp/pip-ephem-wheel-cache-xutkpg06/wheels/7a/94/b1/0fdc5339a5bd487a5cc15421ec200d9ba3e2aa7190e4a727f1 Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491059 sha256=51a6e147702650cedca964f0f1d71dbc95e030ef248e6a504e3c39c990981de7 Stored in directory: /tmp/pip-ephem-wheel-cache-xutkpg06/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0 Successfully built mock future Installing collected packages: urllib3, sphinxcontrib-serializinghtml, pytz, pyparsing, MarkupSafe, idna, chardet, certifi, sphinxcontrib-websupport, snowballstemmer, six, requests, Pygments, packaging, Jinja2, imagesize, future, docutils, babel, alabaster, sphinx, commonmark, sphinx-rtd-theme, recommonmark, readthedocs-sphinx-ext, pillow, mock Successfully installed Jinja2-2.11.3 MarkupSafe-1.1.1 Pygments-2.8.1 alabaster-0.7.12 babel-2.9.0 certifi-2020.12.5 chardet-4.0.0 commonmark-0.8.1 docutils-0.17.1 future-0.18.2 idna-2.10 imagesize-1.2.0 mock-1.0.1 packaging-20.9 pillow-5.4.1 pyparsing-2.4.7 pytz-2021.1 readthedocs-sphinx-ext-2.1.4 recommonmark-0.5.0 requests-2.25.1 six-1.15.0 snowballstemmer-2.1.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-serializinghtml-1.1.4 sphinxcontrib-websupport-1.2.4 urllib3-1.26.4 [rtd-command-info] start-time: 2021-04-20T21:31:30.778226Z, end-time: 2021-04-20T21:31:30.840887Z, duration: 0, exit-code: 0 cat docs/source/conf.py # -*- coding: utf-8 -*- # # Configuration file for the Sphinx documentation builder. # # This file does only contain a selection of the most common options. For a # full list see the documentation: # http://www.sphinx-doc.org/en/master/config # -- Path setup -------------------------------------------------------------- # If extensions (or modules to document with autodoc) are in another directory, # add these directories to sys.path here. If the directory is relative to the # documentation root, use os.path.abspath to make it absolute, like shown here. # # import os # import sys # sys.path.insert(0, os.path.abspath('.')) RTD_NEW_THEME = True master_doc = 'index' # -- Project information ----------------------------------------------------- project = u'UCSD Center for fMRI' copyright = u'2019, CFMRI' author = u'CFMRI' # The short X.Y version version = u'' # The full version, including alpha/beta/rc tags #release = u'0.0.1' # -- General configuration --------------------------------------------------- # If your documentation needs a minimal Sphinx version, state it here. # # needs_sphinx = '1.0' # Add any Sphinx extension module names here, as strings. They can be # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom # ones. extensions = [ 'sphinx.ext.autodoc', ] # Add any paths that contain templates here, relative to this directory. templates_path = ['ntemplates'] # The suffix(es) of source filenames. # You can specify multiple suffix as a list of string: # # source_suffix = ['.rst', '.md'] source_suffix = '.txt' # The master toctree document. master_doc = 'index' # The language for content autogenerated by Sphinx. Refer to documentation # for a list of supported languages. # # This is also used if you do content translation via gettext catalogs. # Usually you set "language" from the command line for these cases. language = None # List of patterns, relative to source directory, that match files and # directories to ignore when looking for source files. # This pattern also affects html_static_path and html_extra_path. exclude_patterns = [] # The name of the Pygments (syntax highlighting) style to use. pygments_style = None # -- Options for HTML output ------------------------------------------------- # The theme to use for HTML and HTML Help pages. See the documentation for # a list of builtin themes. # #html_theme = 'alabaster' # Theme options are theme-specific and customize the look and feel of a theme # further. For a list of options available for each theme, see the # documentation. # # html_theme_options = {} # Add any paths that contain custom static files (such as style sheets) here, # relative to this directory. They are copied after the builtin static files, # so a file named "default.css" will overwrite the builtin "default.css". html_static_path = ['nstatic'] # Custom sidebar templates, must be a dictionary that maps document names # to template names. # # The default sidebars (for documents that don't match any pattern) are # defined by theme itself. Builtin themes are using these templates by # default: ``['localtoc.html', 'relations.html', 'sourcelink.html', # 'searchbox.html']``. # # html_sidebars = {} # # Adding word wrapping into tables # https://rackerlabs.github.io/docs-rackspace/tools/rtd-tables.html #html_context = { # 'css_files': [ # '_static/theme_overrides.css', # override wide tables in RTD theme # ], # } # -- Options for HTMLHelp output --------------------------------------------- # Output file base name for HTML help builder. htmlhelp_basename = 'cfmri_web_rtddoc' # -- Options for LaTeX output ------------------------------------------------ latex_elements = { # The paper size ('letterpaper' or 'a4paper'). # # 'papersize': 'letterpaper', # The font size ('10pt', '11pt' or '12pt'). # # 'pointsize': '10pt', # Additional stuff for the LaTeX preamble. # # 'preamble': '', # Latex figure (float) alignment # # 'figure_align': 'htbp', } # Grouping the document tree into LaTeX files. List of tuples # (source start file, target name, title, # author, documentclass [howto, manual, or own class]). latex_documents = [ (master_doc, 'cfmri_web_rtd.tex', u'cfmri\\_web\\_rtd Documentation', u'CFMRI', 'manual'), ] # -- Options for manual page output ------------------------------------------ # One entry per manual page. List of tuples # (source start file, name, description, authors, manual section). man_pages = [ (master_doc, 'cfmri_web_rtd', u'cfmri_web_rtd Documentation', [author], 1) ] # -- Options for Texinfo output ---------------------------------------------- # Grouping the document tree into Texinfo files. List of tuples # (source start file, target name, title, author, # dir menu entry, description, category) texinfo_documents = [ (master_doc, 'cfmri_web_rtd', u'cfmri_web_rtd Documentation', author, 'cfmri_web_rtd', 'One line description of project.', 'Miscellaneous'), ] # -- Options for Epub output ------------------------------------------------- # Bibliographic Dublin Core info. epub_title = project # The unique identifier of the text. This can be a ISBN number # or the project homepage. # # epub_identifier = '' # A unique identification for the text. # # epub_uid = '' # A list of files that should not be packed into the epub file. epub_exclude_files = ['search.html'] # -- Extension configuration ------------------------------------------------- ########################################################################### # auto-created readthedocs.org specific configuration # ########################################################################### # # The following code was added during an automated build on readthedocs.org # It is auto created and injected for every build. The result is based on the # conf.py.tmpl file found in the readthedocs.org codebase: # https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl # # Note: this file should't rely on extra depencies. import importlib import sys import os.path # Borrowed from six. PY3 = sys.version_info[0] == 3 string_types = str if PY3 else basestring from sphinx import version_info # Get suffix for proper linking to GitHub # This is deprecated in Sphinx 1.3+, # as each page can have its own suffix if globals().get('source_suffix', False): if isinstance(source_suffix, string_types): SUFFIX = source_suffix elif isinstance(source_suffix, (list, tuple)): # Sphinx >= 1.3 supports list/tuple to define multiple suffixes SUFFIX = source_suffix[0] elif isinstance(source_suffix, dict): # Sphinx >= 1.8 supports a mapping dictionary for multiple suffixes SUFFIX = list(source_suffix.keys())[0] # make a ``list()`` for py2/py3 compatibility else: # default to .rst SUFFIX = '.rst' else: SUFFIX = '.rst' # Add RTD Static Path. Add to the end because it overwrites previous files. if not 'html_static_path' in globals(): html_static_path = [] if os.path.exists('_static'): html_static_path.append('_static') # Add RTD Theme only if they aren't overriding it already using_rtd_theme = ( ( 'html_theme' in globals() and html_theme in ['default'] and # Allow people to bail with a hack of having an html_style 'html_style' not in globals() ) or 'html_theme' not in globals() ) if using_rtd_theme: theme = importlib.import_module('sphinx_rtd_theme') html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} if 'html_theme_path' in globals(): html_theme_path.append(theme.get_html_theme_path()) else: html_theme_path = [theme.get_html_theme_path()] if globals().get('websupport2_base_url', False): websupport2_base_url = 'https://readthedocs.com/websupport' websupport2_static_url = 'https://assets.readthedocs.com/' #Add project information to the template context. context = { 'using_theme': using_rtd_theme, 'html_theme': html_theme, 'current_version': "latest", 'version_slug': "latest", 'MEDIA_URL': "https://media.readthedocs.com/media/", 'STATIC_URL': "https://assets.readthedocs.com/", 'PRODUCTION_DOMAIN': "readthedocs.com", 'versions': [ ("latest", "/en/latest/"), ], 'downloads': [ ("pdf", "//ucsd-center-for-functional-mri-cfmri-web-rtd.readthedocs-hosted.com/_/downloads/en/latest/pdf/"), ("html", "//ucsd-center-for-functional-mri-cfmri-web-rtd.readthedocs-hosted.com/_/downloads/en/latest/htmlzip/"), ("epub", "//ucsd-center-for-functional-mri-cfmri-web-rtd.readthedocs-hosted.com/_/downloads/en/latest/epub/"), ], 'subprojects': [ ], 'slug': 'ucsd-center-for-functional-mri-cfmri-web-rtd', 'name': u'cfmri_web_rtd', 'rtd_language': u'en', 'programming_language': u'words', 'canonical_url': 'https://ucsd-center-for-functional-mri-cfmri-web-rtd.readthedocs-hosted.com/en/latest/', 'analytics_code': 'None', 'single_version': False, 'conf_py_path': '/docs/source/', 'api_host': 'https://readthedocs.com', 'github_user': 'None', 'proxied_api_host': '/_', 'github_repo': 'None', 'github_version': 'master', 'display_github': False, 'bitbucket_user': 'ucsdcfmri', 'bitbucket_repo': 'cfmri_web_rtd', 'bitbucket_version': 'master', 'display_bitbucket': True, 'gitlab_user': 'None', 'gitlab_repo': 'None', 'gitlab_version': 'master', 'display_gitlab': False, 'READTHEDOCS': True, 'using_theme': (html_theme == "default"), 'new_theme': (html_theme == "sphinx_rtd_theme"), 'source_suffix': SUFFIX, 'ad_free': False, 'docsearch_disabled': False, 'user_analytics_code': '', 'global_analytics_code': 'UA-17997319-2', 'commit': '3bac7c25', } # For sphinx >=1.8 we can use html_baseurl to set the canonical URL. # https://www.sphinx-doc.org/en/master/usage/configuration.html#confval-html_baseurl if version_info >= (1, 8): if not globals().get('html_baseurl'): html_baseurl = context['canonical_url'] context['canonical_url'] = None if 'html_context' in globals(): html_context.update(context) else: html_context = context # Add custom RTD extension if 'extensions' in globals(): # Insert at the beginning because it can interfere # with other extensions. # See https://github.com/rtfd/readthedocs.org/pull/4054 extensions.insert(0, "readthedocs_ext.readthedocs") else: extensions = ["readthedocs_ext.readthedocs"] # Add External version warning banner to the external version documentation if 'branch' == 'external': extensions.insert(1, "readthedocs_ext.external_version_warning") readthedocs_vcs_url = 'None' readthedocs_build_url = 'https://readthedocs.com/projects/ucsd-center-for-functional-mri-cfmri-web-rtd/builds/616755/' project_language = 'en' # User's Sphinx configurations language_user = globals().get('language', None) latex_engine_user = globals().get('latex_engine', None) latex_elements_user = globals().get('latex_elements', None) # Remove this once xindy gets installed in Docker image and XINDYOPS # env variable is supported # https://github.com/rtfd/readthedocs-docker-images/pull/98 latex_use_xindy = False chinese = any([ language_user in ('zh_CN', 'zh_TW'), project_language in ('zh_CN', 'zh_TW'), ]) japanese = any([ language_user == 'ja', project_language == 'ja', ]) if chinese: latex_engine = latex_engine_user or 'xelatex' latex_elements_rtd = { 'preamble': '\\usepackage[UTF8]{ctex}\n', } latex_elements = latex_elements_user or latex_elements_rtd elif japanese: latex_engine = latex_engine_user or 'platex' # Make sure our build directory is always excluded exclude_patterns = globals().get('exclude_patterns', []) exclude_patterns.extend(['_build']) [rtd-command-info] start-time: 2021-04-20T21:31:30.966630Z, end-time: 2021-04-20T21:31:33.533641Z, duration: 2, exit-code: 0 python -m sphinx -T -b html -d _build/doctrees -D language=en . _build/html Running Sphinx v1.8.5 loading translations [en]... done making output directory... building [mo]: targets for 0 po files that are out of date building [html]: targets for 24 source files that are out of date updating environment: 24 added, 0 changed, 0 removed reading sources... 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[100%] pdf/3T_UCSD_operator_checklist_rev08-2006.pdf copying static files... done copying extra files... done dumping search index in English (code: en) ... done dumping object inventory... done build succeeded, 20 warnings. The HTML pages are in _build/html. Updating searchtools for Read the Docs search... [rtd-command-info] start-time: 2021-04-20T21:31:33.771750Z, end-time: 2021-04-20T21:31:35.104068Z, duration: 1, exit-code: 0 python -m sphinx -T -b readthedocssinglehtmllocalmedia -d _build/doctrees -D language=en . _build/localmedia Running Sphinx v1.8.5 loading translations [en]... done making output directory... loading pickled environment... done building [mo]: targets for 0 po files that are out of date building [readthedocssinglehtmllocalmedia]: all documents updating environment: [] 0 added, 1 changed, 0 removed reading sources... 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' %O %S'; $makeindex = 'makeindex -s python.ist %O -o %D %S'; add_cus_dep( "glo", "gls", 0, "makeglo" ); sub makeglo { return system( "makeindex -s gglo.ist -o '$_[0].gls' '$_[0].glo'" ); } [rtd-command-info] start-time: 2021-04-20T21:31:44.697665Z, end-time: 2021-04-20T21:32:10.642986Z, duration: 25, exit-code: 0 latexmk -r latexmkrc -pdf -f -dvi- -ps- -jobname=ucsd-center-for-functional-mri-cfmri-web-rtd -interaction=nonstopmode Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 1, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 2, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 3, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 4, chunk 1. Subroutine makeglo redefined at (eval 11) line 7, chunk 1. 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Rerun to get cross-references right. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on ucsd-center-for-functional-mri-cfmri-web-rtd.pdf (135 pages, 25886457 bytes). Transcript written on ucsd-center-for-functional-mri-cfmri-web-rtd.log. Latexmk: Index file 'ucsd-center-for-functional-mri-cfmri-web-rtd.idx' was written Latexmk: Missing input file: '{images/matlab_install/mat1}.png' from line 'LaTeX Warning: File `{images/matlab_install/mat1}.png' not found on input line ' Latexmk: Missing input file: '{images/matlab_install/mat1}.png' from line 'LaTeX Warning: File `{images/matlab_install/mat1}.png' not found on input line 3577.' 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Latexmk: Index file 'ucsd-center-for-functional-mri-cfmri-web-rtd.idx' was written Latexmk: Missing input file: '{images/matlab_install/mat1}.png' from line 'LaTeX Warning: File `{images/matlab_install/mat1}.png' not found on input line ' Latexmk: Missing input file: '{images/matlab_install/mat1}.png' from line 'LaTeX Warning: File `{images/matlab_install/mat1}.png' not found on input line 3577.' Latexmk: Missing input file: '{images/matlab_install/mat3}.png' from line 'LaTeX Warning: File `{images/matlab_install/mat3}.png' not found on input line ' Latexmk: Missing input file: '{images/matlab_install/mat3}.png' from line 'LaTeX Warning: File `{images/matlab_install/mat3}.png' not found on input line 3587.' 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Latexmk: Log file says output to 'ucsd-center-for-functional-mri-cfmri-web-rtd.pdf' Latexmk: Log file says output to 'ucsd-center-for-functional-mri-cfmri-web-rtd.pdf' Rule 'pdflatex': File changes, etc: Changed files, or newly in use since previous run(s): 'ucsd-center-for-functional-mri-cfmri-web-rtd.out' 'ucsd-center-for-functional-mri-cfmri-web-rtd.toc' ------------ Run number 3 of rule 'pdflatex' ------------ ------------ Running 'pdflatex -interaction=nonstopmode -recorder --jobname="ucsd-center-for-functional-mri-cfmri-web-rtd" "cfmri_web_rtd.tex"' ------------ Latexmk: applying rule 'pdflatex'... This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./cfmri_web_rtd.tex LaTeX2e <2017-04-15> Babel <3.18> and hyphenation patterns for 84 language(s) loaded. 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Type H for immediate help. ... l.3652 ...imen]{{images/matlab_install/mat15}.png} [126] LaTeX Warning: File `{images/matlab_install/mat16}.png' not found on input line 3654. ! Package pdftex.def Error: File `images/matlab_install/mat16.png' not found: u sing draft setting. See the pdftex.def package documentation for explanation. Type H for immediate help. ... l.3654 ...imen]{{images/matlab_install/mat16}.png} [127] [128] [129] [130] Chapter 16. (./ucsd-center-for-functional-mri-cfmri-web-rtd.ind) [131] (./ucsd-center-for-functional-mri-cfmri-web-rtd.aux) ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on ucsd-center-for-functional-mri-cfmri-web-rtd.pdf (137 pages, 25903442 bytes). Transcript written on ucsd-center-for-functional-mri-cfmri-web-rtd.log. Latexmk: Index file 'ucsd-center-for-functional-mri-cfmri-web-rtd.idx' was written Latexmk: Missing input file: '{images/matlab_install/mat1}.png' from line 'LaTeX Warning: File `{images/matlab_install/mat1}.png' not found on input line ' Latexmk: Missing input file: '{images/matlab_install/mat1}.png' from line 'LaTeX Warning: File `{images/matlab_install/mat1}.png' not found on input line 3577.' Latexmk: Missing input file: '{images/matlab_install/mat3}.png' from line 'LaTeX Warning: File `{images/matlab_install/mat3}.png' not found on input line ' Latexmk: Missing input file: '{images/matlab_install/mat3}.png' from line 'LaTeX Warning: File `{images/matlab_install/mat3}.png' not found on input line 3587.' Latexmk: Missing input file: '{images/matlab_install/mat5}.png' from line 'LaTeX Warning: File `{images/matlab_install/mat5}.png' not found on input line ' Latexmk: Missing input file: '{images/matlab_install/mat5}.png' from line 'LaTeX Warning: File `{images/matlab_install/mat5}.png' not found on input line 3597.' Latexmk: Missing input file: '{images/matlab_install/mat6}.png' from line 'LaTeX Warning: File `{images/matlab_install/mat6}.png' not found on input line ' Latexmk: Missing input file: '{images/matlab_install/mat6}.png' from line 'LaTeX Warning: File `{images/matlab_install/mat6}.png' not found on input line 3599.' Latexmk: Missing input file: '{images/matlab_install/mat7}.png' from line 'LaTeX Warning: File `{images/matlab_install/mat7}.png' not found on input line ' Latexmk: Missing input file: '{images/matlab_install/mat7}.png' from line 'LaTeX Warning: File `{images/matlab_install/mat7}.png' not found on input line 3604.' 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Latexmk: Missing input file: '{images/matlab_install/mat11}.png' from line 'LaTeX Warning: File `{images/matlab_install/mat11}.png' not found on input line' Latexmk: Missing input file: '{images/matlab_install/mat11}.png' from line 'LaTeX Warning: File `{images/matlab_install/mat11}.png' not found on input line 3624.' Latexmk: Missing input file: '{images/matlab_install/mat12}.png' from line 'LaTeX Warning: File `{images/matlab_install/mat12}.png' not found on input line' Latexmk: Missing input file: '{images/matlab_install/mat12}.png' from line 'LaTeX Warning: File `{images/matlab_install/mat12}.png' not found on input line 3629.' Latexmk: Missing input file: '{images/matlab_install/mat13}.png' from line 'LaTeX Warning: File `{images/matlab_install/mat13}.png' not found on input line' Latexmk: Missing input file: '{images/matlab_install/mat13}.png' from line 'LaTeX Warning: File `{images/matlab_install/mat13}.png' not found on input line 3634.' Latexmk: Missing input file: '{images/matlab_install/mat14}.png' from line 'LaTeX Warning: File `{images/matlab_install/mat14}.png' not found on input line' Latexmk: Missing input file: '{images/matlab_install/mat14}.png' from line 'LaTeX Warning: File `{images/matlab_install/mat14}.png' not found on input line 3647.' Latexmk: Missing input file: '{images/matlab_install/mat15}.png' from line 'LaTeX Warning: File `{images/matlab_install/mat15}.png' not found on input line' Latexmk: Missing input file: '{images/matlab_install/mat15}.png' from line 'LaTeX Warning: File `{images/matlab_install/mat15}.png' not found on input line 3652.' Latexmk: Missing input file: '{images/matlab_install/mat16}.png' from line 'LaTeX Warning: File `{images/matlab_install/mat16}.png' not found on input line' Latexmk: Missing input file: '{images/matlab_install/mat16}.png' from line 'LaTeX Warning: File `{images/matlab_install/mat16}.png' not found on input line 3654.' Latexmk: Log file says output to 'ucsd-center-for-functional-mri-cfmri-web-rtd.pdf' Latexmk: Log file says output to 'ucsd-center-for-functional-mri-cfmri-web-rtd.pdf' Collected error summary (may duplicate other messages): pdflatex: Command for 'pdflatex' gave return code 256 Latexmk: Errors, in force_mode: so I tried finishing targets [rtd-command-info] start-time: 2021-04-20T21:32:10.783845Z, end-time: 2021-04-20T21:32:10.860406Z, duration: 0, exit-code: 0 mv -f /home/docs/checkouts/readthedocs.org/user_builds/ucsd-center-for-functional-mri-cfmri-web-rtd/checkouts/latest/docs/source/_build/latex/ucsd-center-for-functional-mri-cfmri-web-rtd.pdf /home/docs/checkouts/readthedocs.org/user_builds/ucsd-center-for-functional-mri-cfmri-web-rtd/artifacts/latest/sphinx_pdf/ucsd-center-for-functional-mri-cfmri-web-rtd.pdf [rtd-command-info] start-time: 2021-04-20T21:32:10.971289Z, end-time: 2021-04-20T21:32:13.491805Z, duration: 2, exit-code: 0 python -m sphinx -T -b epub -d _build/doctrees -D language=en . _build/epub Running Sphinx v1.8.5 loading translations [en]... done making output directory... loading pickled environment... done building [mo]: targets for 0 po files that are out of date building [epub]: targets for 24 source files that are out of date updating environment: [] 0 added, 1 changed, 0 removed reading sources... [100%] software /home/docs/checkouts/readthedocs.org/user_builds/ucsd-center-for-functional-mri-cfmri-web-rtd/checkouts/latest/docs/source/software.txt:3: WARNING: Duplicate explicit target name: "mac osx". /home/docs/checkouts/readthedocs.org/user_builds/ucsd-center-for-functional-mri-cfmri-web-rtd/checkouts/latest/docs/source/software.txt:: WARNING: image file not readable: images/matlab_install/mat1.png /home/docs/checkouts/readthedocs.org/user_builds/ucsd-center-for-functional-mri-cfmri-web-rtd/checkouts/latest/docs/source/software.txt:: WARNING: image file not readable: images/matlab_install/mat3.png /home/docs/checkouts/readthedocs.org/user_builds/ucsd-center-for-functional-mri-cfmri-web-rtd/checkouts/latest/docs/source/software.txt:: WARNING: image file not readable: images/matlab_install/mat5.png /home/docs/checkouts/readthedocs.org/user_builds/ucsd-center-for-functional-mri-cfmri-web-rtd/checkouts/latest/docs/source/software.txt:: WARNING: image file not readable: images/matlab_install/mat6.png /home/docs/checkouts/readthedocs.org/user_builds/ucsd-center-for-functional-mri-cfmri-web-rtd/checkouts/latest/docs/source/software.txt:: WARNING: image file not readable: images/matlab_install/mat7.png /home/docs/checkouts/readthedocs.org/user_builds/ucsd-center-for-functional-mri-cfmri-web-rtd/checkouts/latest/docs/source/software.txt:: WARNING: image file not readable: images/matlab_install/mat8.png /home/docs/checkouts/readthedocs.org/user_builds/ucsd-center-for-functional-mri-cfmri-web-rtd/checkouts/latest/docs/source/software.txt:: WARNING: image file not readable: images/matlab_install/mat9.png /home/docs/checkouts/readthedocs.org/user_builds/ucsd-center-for-functional-mri-cfmri-web-rtd/checkouts/latest/docs/source/software.txt:: WARNING: image file not readable: images/matlab_install/mat10.png /home/docs/checkouts/readthedocs.org/user_builds/ucsd-center-for-functional-mri-cfmri-web-rtd/checkouts/latest/docs/source/software.txt:: WARNING: image file not readable: images/matlab_install/mat11.png /home/docs/checkouts/readthedocs.org/user_builds/ucsd-center-for-functional-mri-cfmri-web-rtd/checkouts/latest/docs/source/software.txt:: WARNING: image file not readable: images/matlab_install/mat12.png /home/docs/checkouts/readthedocs.org/user_builds/ucsd-center-for-functional-mri-cfmri-web-rtd/checkouts/latest/docs/source/software.txt:: WARNING: image file not readable: images/matlab_install/mat13.png /home/docs/checkouts/readthedocs.org/user_builds/ucsd-center-for-functional-mri-cfmri-web-rtd/checkouts/latest/docs/source/software.txt:: WARNING: image file not readable: images/matlab_install/mat14.png /home/docs/checkouts/readthedocs.org/user_builds/ucsd-center-for-functional-mri-cfmri-web-rtd/checkouts/latest/docs/source/software.txt:: WARNING: image file not readable: images/matlab_install/mat15.png /home/docs/checkouts/readthedocs.org/user_builds/ucsd-center-for-functional-mri-cfmri-web-rtd/checkouts/latest/docs/source/software.txt:: WARNING: image file not readable: images/matlab_install/mat16.png looking for now-outdated files... none found pickling environment... done checking consistency... /home/docs/checkouts/readthedocs.org/user_builds/ucsd-center-for-functional-mri-cfmri-web-rtd/checkouts/latest/docs/source/prisma_toc.txt: WARNING: document isn't included in any toctree done preparing documents... done writing output... 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[100%] images/troubleshooting/weighterror3.jpg copying static files... done copying extra files... done WARNING: conf value "version" should not be empty for EPUB3 writing mimetype file... writing META-INF/container.xml file... writing content.opf file... writing nav.xhtml file... writing toc.ncx file... writing UCSDCenterforfMRI.epub file... build succeeded, 18 warnings. The ePub file is in _build/epub. Updating searchtools for Read the Docs search... [rtd-command-info] start-time: 2021-04-20T21:32:13.612223Z, end-time: 2021-04-20T21:32:13.732912Z, duration: 0, exit-code: 0 mv -f /home/docs/checkouts/readthedocs.org/user_builds/ucsd-center-for-functional-mri-cfmri-web-rtd/checkouts/latest/docs/source/_build/epub/UCSDCenterforfMRI.epub /home/docs/checkouts/readthedocs.org/user_builds/ucsd-center-for-functional-mri-cfmri-web-rtd/artifacts/latest/sphinx_epub/ucsd-center-for-functional-mri-cfmri-web-rtd.epub