Read the Docs build information Build id: 609211 Project: institute-for-disease-modeling-emod-api Version: latest Commit: af701373691d08b238030dc59ba5630b2b798cec Date: 2021-04-08T18:22:48.155669Z State: finished Success: True [rtd-command-info] start-time: 2021-04-08T18:23:50.045912Z, end-time: 2021-04-08T18:23:51.852055Z, duration: 1, exit-code: 0 git clone --no-single-branch --depth 50 git@github.com:InstituteforDiseaseModeling/emod-api.git . Cloning into '.'... Warning: Permanently added 'github.com,192.30.255.113' (RSA) to the list of known hosts. [rtd-command-info] start-time: 2021-04-08T18:23:52.035660Z, end-time: 2021-04-08T18:23:52.242652Z, duration: 0, exit-code: 0 git checkout --force origin/master Note: checking out 'origin/master'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at af70137 Bump version: 1.8.8 → 1.8.9 [rtd-command-info] start-time: 2021-04-08T18:23:52.348738Z, end-time: 2021-04-08T18:23:52.419372Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2021-04-08T18:23:53.487782Z, end-time: 2021-04-08T18:23:57.802208Z, duration: 4, exit-code: 0 python3.7 -mvirtualenv --system-site-packages Using base prefix '/home/docs/.pyenv/versions/3.7.9' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2021-04-08T18:23:57.948393Z, end-time: 2021-04-08T18:23:59.790511Z, duration: 1, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip setuptools Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/simple Requirement already satisfied: pip in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (21.0.1) Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (54.2.0) [rtd-command-info] start-time: 2021-04-08T18:23:59.897848Z, end-time: 2021-04-08T18:24:10.351969Z, duration: 10, exit-code: 0 python -m pip install --upgrade --no-cache-dir -I mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<2.2 Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/simple Collecting mock==1.0.1 Downloading mock-1.0.1.zip (861 kB) Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.5-py2.py3-none-any.whl (3.1 MB) Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) Collecting readthedocs-sphinx-ext<2.2 Downloading readthedocs_sphinx_ext-2.1.4-py2.py3-none-any.whl (29 kB) Collecting future Downloading future-0.18.2.tar.gz (829 kB) Collecting docutils>=0.11 Downloading docutils-0.17-py2.py3-none-any.whl (575 kB) Collecting Jinja2>=2.9 Downloading Jinja2-2.11.3-py2.py3-none-any.whl (125 kB) Collecting requests Downloading requests-2.25.1-py2.py3-none-any.whl (61 kB) Collecting sphinxcontrib-websupport Downloading sphinxcontrib_websupport-1.2.4-py2.py3-none-any.whl (39 kB) Collecting setuptools Downloading setuptools-54.2.0-py3-none-any.whl (785 kB) Collecting Pygments>=2.0 Downloading Pygments-2.8.1-py3-none-any.whl (983 kB) Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.1.0-py2.py3-none-any.whl (93 kB) Collecting packaging Downloading packaging-20.9-py2.py3-none-any.whl (40 kB) Collecting babel!=2.0,>=1.3 Downloading Babel-2.9.0-py2.py3-none-any.whl (8.8 MB) Collecting six>=1.5 Downloading six-1.15.0-py2.py3-none-any.whl (10 kB) Collecting imagesize Downloading imagesize-1.2.0-py2.py3-none-any.whl (4.8 kB) Collecting pytz>=2015.7 Downloading pytz-2021.1-py2.py3-none-any.whl (510 kB) Collecting MarkupSafe>=0.23 Downloading MarkupSafe-1.1.1-cp37-cp37m-manylinux2010_x86_64.whl (33 kB) Collecting urllib3<1.27,>=1.21.1 Downloading urllib3-1.26.4-py2.py3-none-any.whl (153 kB) Collecting certifi>=2017.4.17 Downloading certifi-2020.12.5-py2.py3-none-any.whl (147 kB) Collecting chardet<5,>=3.0.2 Downloading chardet-4.0.0-py2.py3-none-any.whl (178 kB) Collecting idna<3,>=2.5 Downloading idna-2.10-py2.py3-none-any.whl (58 kB) Collecting pyparsing>=2.0.2 Downloading pyparsing-2.4.7-py2.py3-none-any.whl (67 kB) Collecting sphinxcontrib-serializinghtml Downloading sphinxcontrib_serializinghtml-1.1.4-py2.py3-none-any.whl (89 kB) Building wheels for collected packages: mock, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23755 sha256=0d7e1dfd9dec6933464317093b404ae8c1a75dc70cf5ac134b3bd99644567938 Stored in directory: /tmp/pip-ephem-wheel-cache-_jmyh4gd/wheels/7a/94/b1/0fdc5339a5bd487a5cc15421ec200d9ba3e2aa7190e4a727f1 Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491059 sha256=fd5d9dc91b7bad6b1f9e5a967c1347c3cfa271344f5671ff7c020e113589c8da Stored in directory: /tmp/pip-ephem-wheel-cache-_jmyh4gd/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0 Successfully built mock future Installing collected packages: urllib3, sphinxcontrib-serializinghtml, pytz, pyparsing, MarkupSafe, idna, chardet, certifi, sphinxcontrib-websupport, snowballstemmer, six, setuptools, requests, Pygments, packaging, Jinja2, imagesize, future, docutils, babel, alabaster, sphinx, commonmark, sphinx-rtd-theme, recommonmark, readthedocs-sphinx-ext, pillow, mock ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts. matplotlib 3.3.2 requires pillow>=6.2.0, but you have pillow 5.4.1 which is incompatible. Successfully installed Jinja2-2.11.3 MarkupSafe-1.1.1 Pygments-2.8.1 alabaster-0.7.12 babel-2.9.0 certifi-2020.12.5 chardet-4.0.0 commonmark-0.8.1 docutils-0.17 future-0.18.2 idna-2.10 imagesize-1.2.0 mock-1.0.1 packaging-20.9 pillow-5.4.1 pyparsing-2.4.7 pytz-2021.1 readthedocs-sphinx-ext-2.1.4 recommonmark-0.5.0 requests-2.25.1 setuptools-54.2.0 six-1.15.0 snowballstemmer-2.1.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-serializinghtml-1.1.4 sphinxcontrib-websupport-1.2.4 urllib3-1.26.4 [rtd-command-info] start-time: 2021-04-08T18:24:10.478886Z, end-time: 2021-04-08T18:24:13.057156Z, duration: 2, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r requirements.txt Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/simple Requirement already satisfied: numpy!=1.19.4 in /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages (from -r requirements.txt (line 1)) (1.19.2) Collecting lz4 Downloading lz4-3.1.3-cp37-cp37m-manylinux2010_x86_64.whl (1.8 MB) Collecting pyyaml Downloading PyYAML-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (636 kB) Requirement already satisfied: pandas in /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages (from -r requirements.txt (line 4)) (1.1.3) Requirement already satisfied: scipy in /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages (from -r requirements.txt (line 5)) (1.5.3) Collecting shapely Downloading Shapely-1.7.1-cp37-cp37m-manylinux1_x86_64.whl (1.0 MB) Collecting pyproj Downloading pyproj-3.0.1-cp37-cp37m-manylinux2010_x86_64.whl (6.5 MB) Collecting geographiclib Downloading geographiclib-1.50-py3-none-any.whl (38 kB) Requirement already satisfied: pytz>=2017.2 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from pandas->-r requirements.txt (line 4)) (2021.1) Requirement already satisfied: python-dateutil>=2.7.3 in /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages (from pandas->-r requirements.txt (line 4)) (2.8.1) Requirement already satisfied: six>=1.5 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from python-dateutil>=2.7.3->pandas->-r requirements.txt (line 4)) (1.15.0) Requirement already satisfied: certifi in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from pyproj->-r requirements.txt (line 7)) (2020.12.5) Installing collected packages: shapely, pyyaml, pyproj, lz4, geographiclib Successfully installed geographiclib-1.50 lz4-3.1.3 pyproj-3.0.1 pyyaml-5.4.1 shapely-1.7.1 [rtd-command-info] start-time: 2021-04-08T18:24:13.187872Z, end-time: 2021-04-08T18:24:20.261122Z, duration: 7, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r docs/requirements.txt Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/simple Collecting sphinx-rtd-theme~=0.5.0 Downloading sphinx_rtd_theme-0.5.2-py2.py3-none-any.whl (9.1 MB) Collecting sphinxcontrib-napoleon~=0.7 Downloading sphinxcontrib_napoleon-0.7-py2.py3-none-any.whl (17 kB) Collecting sphinx~=3.2.1 Downloading Sphinx-3.2.1-py3-none-any.whl (2.9 MB) Collecting plantweb~=1.2.1 Downloading plantweb-1.2.1-py3-none-any.whl (20 kB) Collecting sphinxcontrib-programoutput~=0.16 Downloading sphinxcontrib_programoutput-0.17-py2.py3-none-any.whl (22 kB) Collecting py-make Downloading py_make-0.1.1-py2.py3-none-any.whl (9.4 kB) Collecting PyGithub~=1.51 Downloading PyGithub-1.54.1-py3-none-any.whl (289 kB) Collecting pygit2~=1.2.1 Downloading pygit2-1.2.1-cp37-cp37m-manylinux2010_x86_64.whl (3.0 MB) Requirement already satisfied: docutils in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from plantweb~=1.2.1->-r docs/requirements.txt (line 4)) (0.17) Requirement already satisfied: requests in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from plantweb~=1.2.1->-r docs/requirements.txt (line 4)) (2.25.1) Requirement already satisfied: six in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from plantweb~=1.2.1->-r docs/requirements.txt (line 4)) (1.15.0) Collecting cached-property Downloading cached_property-1.5.2-py2.py3-none-any.whl (7.6 kB) Collecting cffi>=1.4.0 Downloading cffi-1.14.5-cp37-cp37m-manylinux1_x86_64.whl (402 kB) Collecting pyjwt<2.0 Downloading PyJWT-1.7.1-py2.py3-none-any.whl (18 kB) Collecting deprecated Downloading Deprecated-1.2.12-py2.py3-none-any.whl (9.5 kB) Requirement already satisfied: imagesize in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from sphinx~=3.2.1->-r docs/requirements.txt (line 3)) (1.2.0) Requirement already satisfied: sphinxcontrib-serializinghtml in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from sphinx~=3.2.1->-r docs/requirements.txt (line 3)) (1.1.4) Requirement already satisfied: alabaster<0.8,>=0.7 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from sphinx~=3.2.1->-r docs/requirements.txt (line 3)) (0.7.12) Collecting sphinxcontrib-applehelp Downloading sphinxcontrib_applehelp-1.0.2-py2.py3-none-any.whl (121 kB) Collecting sphinxcontrib-htmlhelp Downloading sphinxcontrib_htmlhelp-1.0.3-py2.py3-none-any.whl (96 kB) Collecting sphinxcontrib-devhelp Downloading sphinxcontrib_devhelp-1.0.2-py2.py3-none-any.whl (84 kB) Collecting sphinxcontrib-qthelp Downloading sphinxcontrib_qthelp-1.0.3-py2.py3-none-any.whl (90 kB) Requirement already satisfied: babel>=1.3 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from sphinx~=3.2.1->-r docs/requirements.txt (line 3)) (2.9.0) Requirement already satisfied: snowballstemmer>=1.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from sphinx~=3.2.1->-r docs/requirements.txt (line 3)) (2.1.0) Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from sphinx~=3.2.1->-r docs/requirements.txt (line 3)) (54.2.0) Requirement already satisfied: Jinja2>=2.3 in 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/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from babel>=1.3->sphinx~=3.2.1->-r docs/requirements.txt (line 3)) (2021.1) Collecting pycparser Downloading pycparser-2.20-py2.py3-none-any.whl (112 kB) Requirement already satisfied: MarkupSafe>=0.23 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from Jinja2>=2.3->sphinx~=3.2.1->-r docs/requirements.txt (line 3)) (1.1.1) Requirement already satisfied: idna<3,>=2.5 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from requests->plantweb~=1.2.1->-r docs/requirements.txt (line 4)) (2.10) Requirement already satisfied: urllib3<1.27,>=1.21.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from 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collected packages: docopt, wrapt Building wheel for docopt (setup.py): started Building wheel for docopt (setup.py): finished with status 'done' Created wheel for docopt: filename=docopt-0.6.2-py2.py3-none-any.whl size=13705 sha256=19a1aea396a95e2eaed095c9b228c9004ea1ccd8a5d8968b25814766f1c1ae48 Stored in directory: /tmp/pip-ephem-wheel-cache-bw0ao66u/wheels/72/b0/3f/1d95f96ff986c7dfffe46ce2be4062f38ebd04b506c77c81b9 Building wheel for wrapt (setup.py): started Building wheel for wrapt (setup.py): finished with status 'done' Created wheel for wrapt: filename=wrapt-1.12.1-cp37-cp37m-linux_x86_64.whl size=71024 sha256=ec9611e68007eba68cbca6fc506c0b5d35ad7bf38725bdb63100222a061319c0 Stored in directory: /tmp/pip-ephem-wheel-cache-bw0ao66u/wheels/62/76/4c/aa25851149f3f6d9785f6c869387ad82b3fd37582fa8147ac6 Successfully built docopt wrapt Installing collected packages: wrapt, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, pycparser, docutils, sphinx, pyjwt, pockets, docopt, deprecated, cffi, cached-property, sphinxcontrib-programoutput, sphinxcontrib-napoleon, sphinx-rtd-theme, PyGithub, pygit2, py-make, plantweb Attempting uninstall: docutils Found existing installation: docutils 0.17 Uninstalling docutils-0.17: Successfully uninstalled docutils-0.17 Attempting uninstall: sphinx Found existing installation: Sphinx 1.8.5 Uninstalling Sphinx-1.8.5: Successfully uninstalled Sphinx-1.8.5 Attempting uninstall: sphinx-rtd-theme Found existing installation: sphinx-rtd-theme 0.4.3 Uninstalling sphinx-rtd-theme-0.4.3: Successfully uninstalled sphinx-rtd-theme-0.4.3 Successfully installed PyGithub-1.54.1 cached-property-1.5.2 cffi-1.14.5 deprecated-1.2.12 docopt-0.6.2 docutils-0.16 plantweb-1.2.1 pockets-0.9.1 py-make-0.1.1 pycparser-2.20 pygit2-1.2.1 pyjwt-1.7.1 sphinx-3.2.1 sphinx-rtd-theme-0.5.2 sphinxcontrib-applehelp-1.0.2 sphinxcontrib-devhelp-1.0.2 sphinxcontrib-htmlhelp-1.0.3 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-napoleon-0.7 sphinxcontrib-programoutput-0.17 sphinxcontrib-qthelp-1.0.3 wrapt-1.12.1 [rtd-command-info] start-time: 2021-04-08T18:24:20.391382Z, end-time: 2021-04-08T18:24:21.053875Z, duration: 0, exit-code: 0 python ./setup.py install --force running install running bdist_egg running egg_info creating emod_api.egg-info writing emod_api.egg-info/PKG-INFO writing dependency_links to emod_api.egg-info/dependency_links.txt writing requirements to emod_api.egg-info/requires.txt writing top-level names to emod_api.egg-info/top_level.txt writing manifest file 'emod_api.egg-info/SOURCES.txt' reading manifest file 'emod_api.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no directories found matching 'emod_api/tests/data/*' warning: no directories found matching 'emod_api/dtk_tools/serialization/test-data/*' writing manifest file 'emod_api.egg-info/SOURCES.txt' installing library code to build/bdist.linux-x86_64/egg running install_lib running build_py creating build creating build/lib creating build/lib/emod_api copying emod_api/__main__.py -> build/lib/emod_api copying emod_api/campaign.py -> build/lib/emod_api copying emod_api/schema_to_class.py -> build/lib/emod_api copying emod_api/__init__.py -> build/lib/emod_api creating build/lib/examples copying examples/serialized_file_mc_to_sc.py -> build/lib/examples copying examples/some_config_i_found.py -> build/lib/examples copying examples/weather_file.py -> build/lib/examples copying examples/spatial_report.py -> build/lib/examples copying examples/default_from_schema.py -> build/lib/examples copying examples/migration.py -> build/lib/examples copying examples/write_config_from_default_and_params.py -> build/lib/examples copying examples/intervention_from_schema.py -> build/lib/examples copying examples/insetchart.py -> build/lib/examples copying examples/__init__.py -> build/lib/examples creating build/lib/emod_api/channelreports copying emod_api/channelreports/__main__.py -> build/lib/emod_api/channelreports copying emod_api/channelreports/channels.py -> build/lib/emod_api/channelreports copying emod_api/channelreports/__init__.py -> build/lib/emod_api/channelreports creating build/lib/emod_api/spatialreports copying emod_api/spatialreports/__main__.py -> build/lib/emod_api/spatialreports copying emod_api/spatialreports/spatial.py -> build/lib/emod_api/spatialreports copying emod_api/spatialreports/__init__.py -> build/lib/emod_api/spatialreports creating build/lib/emod_api/tabularoutput copying emod_api/tabularoutput/__main__.py -> build/lib/emod_api/tabularoutput copying emod_api/tabularoutput/__init__.py -> build/lib/emod_api/tabularoutput creating build/lib/emod_api/schema copying emod_api/schema/dtk_post_process_schema.py -> build/lib/emod_api/schema copying emod_api/schema/__main__.py -> build/lib/emod_api/schema copying emod_api/schema/get_schema.py -> build/lib/emod_api/schema copying emod_api/schema/__init__.py -> build/lib/emod_api/schema creating build/lib/emod_api/demographics copying emod_api/demographics/Demographics.py -> build/lib/emod_api/demographics copying emod_api/demographics/DemographicsGenerator.py -> build/lib/emod_api/demographics copying emod_api/demographics/__main__.py -> build/lib/emod_api/demographics copying emod_api/demographics/Node.py -> build/lib/emod_api/demographics copying emod_api/demographics/grid_construction.py -> build/lib/emod_api/demographics copying emod_api/demographics/BaseInputFile.py -> build/lib/emod_api/demographics copying emod_api/demographics/DemographicsInputDataParsers.py -> build/lib/emod_api/demographics copying emod_api/demographics/demographics_utils.py -> build/lib/emod_api/demographics copying emod_api/demographics/__init__.py -> build/lib/emod_api/demographics copying emod_api/demographics/DemographicsTemplates.py -> build/lib/emod_api/demographics creating build/lib/emod_api/interventions copying emod_api/interventions/outbreak.py -> build/lib/emod_api/interventions copying emod_api/interventions/utils.py -> build/lib/emod_api/interventions copying emod_api/interventions/__main__.py -> build/lib/emod_api/interventions copying emod_api/interventions/common.py -> build/lib/emod_api/interventions copying emod_api/interventions/import_pressure.py -> build/lib/emod_api/interventions copying emod_api/interventions/simple_vaccine.py -> build/lib/emod_api/interventions copying emod_api/interventions/__init__.py -> build/lib/emod_api/interventions creating build/lib/emod_api/serialization copying emod_api/serialization/SerializedPopulation.py -> build/lib/emod_api/serialization copying emod_api/serialization/__main__.py -> build/lib/emod_api/serialization copying emod_api/serialization/dtkFileSupport.py -> build/lib/emod_api/serialization copying emod_api/serialization/dtkFileTools.py -> build/lib/emod_api/serialization copying emod_api/serialization/CensusAndModPop.py -> build/lib/emod_api/serialization copying emod_api/serialization/dtkFileUtility.py -> build/lib/emod_api/serialization copying emod_api/serialization/__init__.py -> build/lib/emod_api/serialization creating build/lib/emod_api/config copying emod_api/config/dtk_pre_process_w5ml.py -> build/lib/emod_api/config copying emod_api/config/from_schema.py -> build/lib/emod_api/config copying emod_api/config/default_from_schema_no_validation.py -> build/lib/emod_api/config copying emod_api/config/dtk_pre_process_adhocevents.py -> build/lib/emod_api/config copying emod_api/config/from_poi_and_binary.py -> build/lib/emod_api/config copying emod_api/config/dtk_post_process_adhocevents.py -> build/lib/emod_api/config copying emod_api/config/__main__.py -> build/lib/emod_api/config copying emod_api/config/default_from_schema.py -> build/lib/emod_api/config copying emod_api/config/from_overrides.py -> build/lib/emod_api/config copying emod_api/config/schema_to_config.py -> build/lib/emod_api/config copying emod_api/config/__init__.py -> build/lib/emod_api/config creating build/lib/emod_api/weather copying emod_api/weather/weather.py -> build/lib/emod_api/weather copying emod_api/weather/__main__.py -> build/lib/emod_api/weather copying emod_api/weather/__init__.py -> build/lib/emod_api/weather creating build/lib/emod_api/migration copying emod_api/migration/__main__.py -> build/lib/emod_api/migration copying emod_api/migration/migration.py -> build/lib/emod_api/migration copying emod_api/migration/__init__.py -> build/lib/emod_api/migration creating build/lib/tests creating build/lib/tests/unittests copying tests/unittests/test_schema_imports.py -> build/lib/tests/unittests copying tests/unittests/test_demographics_imports.py -> build/lib/tests/unittests copying tests/unittests/test_config_imports.py -> build/lib/tests/unittests copying tests/unittests/__init__.py -> build/lib/tests/unittests creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/egg creating build/bdist.linux-x86_64/egg/emod_api creating build/bdist.linux-x86_64/egg/emod_api/channelreports copying build/lib/emod_api/channelreports/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/channelreports copying build/lib/emod_api/channelreports/channels.py -> build/bdist.linux-x86_64/egg/emod_api/channelreports copying build/lib/emod_api/channelreports/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/channelreports creating build/bdist.linux-x86_64/egg/emod_api/spatialreports copying build/lib/emod_api/spatialreports/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/spatialreports copying build/lib/emod_api/spatialreports/spatial.py -> build/bdist.linux-x86_64/egg/emod_api/spatialreports copying build/lib/emod_api/spatialreports/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/spatialreports creating build/bdist.linux-x86_64/egg/emod_api/tabularoutput copying build/lib/emod_api/tabularoutput/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/tabularoutput copying build/lib/emod_api/tabularoutput/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/tabularoutput creating build/bdist.linux-x86_64/egg/emod_api/schema copying build/lib/emod_api/schema/dtk_post_process_schema.py -> build/bdist.linux-x86_64/egg/emod_api/schema copying build/lib/emod_api/schema/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/schema copying build/lib/emod_api/schema/get_schema.py -> build/bdist.linux-x86_64/egg/emod_api/schema copying build/lib/emod_api/schema/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/schema creating build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/Demographics.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/DemographicsGenerator.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/Node.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/grid_construction.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/BaseInputFile.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/DemographicsInputDataParsers.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/demographics_utils.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/DemographicsTemplates.py -> build/bdist.linux-x86_64/egg/emod_api/demographics creating build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/outbreak.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/utils.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/common.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/import_pressure.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/simple_vaccine.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/__main__.py -> build/bdist.linux-x86_64/egg/emod_api creating build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/SerializedPopulation.py -> build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/dtkFileSupport.py -> build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/dtkFileTools.py -> build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/CensusAndModPop.py -> build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/dtkFileUtility.py -> build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/serialization creating build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/dtk_pre_process_w5ml.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/from_schema.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/default_from_schema_no_validation.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/dtk_pre_process_adhocevents.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/from_poi_and_binary.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/dtk_post_process_adhocevents.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/default_from_schema.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/from_overrides.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/schema_to_config.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/config creating build/bdist.linux-x86_64/egg/emod_api/weather copying build/lib/emod_api/weather/weather.py -> build/bdist.linux-x86_64/egg/emod_api/weather copying build/lib/emod_api/weather/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/weather copying build/lib/emod_api/weather/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/weather copying build/lib/emod_api/campaign.py -> build/bdist.linux-x86_64/egg/emod_api copying build/lib/emod_api/schema_to_class.py -> build/bdist.linux-x86_64/egg/emod_api creating build/bdist.linux-x86_64/egg/emod_api/migration copying build/lib/emod_api/migration/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/migration copying build/lib/emod_api/migration/migration.py -> build/bdist.linux-x86_64/egg/emod_api/migration copying build/lib/emod_api/migration/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/migration copying build/lib/emod_api/__init__.py -> build/bdist.linux-x86_64/egg/emod_api creating build/bdist.linux-x86_64/egg/tests creating build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_schema_imports.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_demographics_imports.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_config_imports.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/__init__.py -> build/bdist.linux-x86_64/egg/tests/unittests creating build/bdist.linux-x86_64/egg/examples copying build/lib/examples/serialized_file_mc_to_sc.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/some_config_i_found.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/weather_file.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/spatial_report.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/default_from_schema.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/migration.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/write_config_from_default_and_params.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/intervention_from_schema.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/insetchart.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/__init__.py -> build/bdist.linux-x86_64/egg/examples byte-compiling build/bdist.linux-x86_64/egg/emod_api/channelreports/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/channelreports/channels.py to channels.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/channelreports/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/spatialreports/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/spatialreports/spatial.py to spatial.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/spatialreports/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/tabularoutput/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/tabularoutput/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/schema/dtk_post_process_schema.py to dtk_post_process_schema.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/schema/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/schema/get_schema.py to get_schema.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/schema/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/Demographics.py to Demographics.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/DemographicsGenerator.py to DemographicsGenerator.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/Node.py to Node.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/grid_construction.py to grid_construction.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/BaseInputFile.py to BaseInputFile.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/DemographicsInputDataParsers.py to DemographicsInputDataParsers.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/demographics_utils.py to demographics_utils.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/DemographicsTemplates.py to DemographicsTemplates.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/outbreak.py to outbreak.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/utils.py to utils.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/common.py to common.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/import_pressure.py to import_pressure.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/simple_vaccine.py to simple_vaccine.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/SerializedPopulation.py to SerializedPopulation.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/dtkFileSupport.py to dtkFileSupport.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/dtkFileTools.py to dtkFileTools.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/CensusAndModPop.py to CensusAndModPop.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/dtkFileUtility.py to dtkFileUtility.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/dtk_pre_process_w5ml.py to dtk_pre_process_w5ml.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/from_schema.py to from_schema.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/default_from_schema_no_validation.py to default_from_schema_no_validation.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/dtk_pre_process_adhocevents.py to dtk_pre_process_adhocevents.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/from_poi_and_binary.py to from_poi_and_binary.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/dtk_post_process_adhocevents.py to dtk_post_process_adhocevents.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/default_from_schema.py to default_from_schema.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/from_overrides.py to from_overrides.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/schema_to_config.py to schema_to_config.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/weather/weather.py to weather.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/weather/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/weather/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/campaign.py to campaign.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/schema_to_class.py to schema_to_class.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/migration/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/migration/migration.py to migration.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/migration/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_schema_imports.py to test_schema_imports.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_demographics_imports.py to test_demographics_imports.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_config_imports.py to test_config_imports.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/serialized_file_mc_to_sc.py to serialized_file_mc_to_sc.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/some_config_i_found.py to some_config_i_found.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/weather_file.py to weather_file.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/spatial_report.py to spatial_report.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/default_from_schema.py to default_from_schema.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/migration.py to migration.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/write_config_from_default_and_params.py to write_config_from_default_and_params.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/intervention_from_schema.py to intervention_from_schema.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/insetchart.py to insetchart.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/__init__.py to __init__.cpython-37.pyc creating build/bdist.linux-x86_64/egg/EGG-INFO copying emod_api.egg-info/PKG-INFO -> build/bdist.linux-x86_64/egg/EGG-INFO copying emod_api.egg-info/SOURCES.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying emod_api.egg-info/dependency_links.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying emod_api.egg-info/requires.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying emod_api.egg-info/top_level.txt -> build/bdist.linux-x86_64/egg/EGG-INFO zip_safe flag not set; analyzing archive contents... emod_api.config.__pycache__.from_poi_and_binary.cpython-37: module references __file__ emod_api.serialization.__pycache__.dtkFileTools.cpython-37: module references __file__ emod_api.serialization.__pycache__.dtkFileUtility.cpython-37: module references __file__ examples.__pycache__.insetchart.cpython-37: module references __file__ examples.__pycache__.spatial_report.cpython-37: module references __file__ examples.__pycache__.weather_file.cpython-37: module references __file__ creating dist creating 'dist/emod_api-1.8.9-py3.7.egg' and adding 'build/bdist.linux-x86_64/egg' to it removing 'build/bdist.linux-x86_64/egg' (and everything under it) Processing emod_api-1.8.9-py3.7.egg creating /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages/emod_api-1.8.9-py3.7.egg Extracting emod_api-1.8.9-py3.7.egg to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Adding emod-api 1.8.9 to easy-install.pth file Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages/emod_api-1.8.9-py3.7.egg Processing dependencies for emod-api==1.8.9 Searching for geographiclib==1.50 Best match: geographiclib 1.50 Adding geographiclib 1.50 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for pyproj==3.0.1 Best match: pyproj 3.0.1 Adding pyproj 3.0.1 to easy-install.pth file Installing pyproj script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for Shapely==1.7.1 Best match: Shapely 1.7.1 Adding Shapely 1.7.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for scipy==1.5.3 Best match: scipy 1.5.3 Adding scipy 1.5.3 to easy-install.pth file Using /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages Searching for pandas==1.1.3 Best match: pandas 1.1.3 pandas 1.1.3 is already the active version in easy-install.pth Using /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages Searching for PyYAML==5.4.1 Best match: PyYAML 5.4.1 Adding PyYAML 5.4.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for lz4==3.1.3 Best match: lz4 3.1.3 Adding lz4 3.1.3 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for numpy==1.19.2 Best match: numpy 1.19.2 numpy 1.19.2 is already the active version in easy-install.pth Installing f2py script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin Installing f2py3 script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin Installing f2py3.7 script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin Using /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages Searching for certifi==2020.12.5 Best match: certifi 2020.12.5 Adding certifi 2020.12.5 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for pytz==2021.1 Best match: pytz 2021.1 Adding pytz 2021.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for python-dateutil==2.8.1 Best match: python-dateutil 2.8.1 python-dateutil 2.8.1 is already the active version in easy-install.pth Using /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages Searching for six==1.15.0 Best match: six 1.15.0 Adding six 1.15.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Finished processing dependencies for emod-api==1.8.9 [rtd-command-info] start-time: 2021-04-08T18:24:22.557843Z, end-time: 2021-04-08T18:24:22.649970Z, duration: 0, exit-code: 0 cat docs/conf.py # -*- coding: utf-8 -*- # # Sphinx Demo docs build configuration file, created by # sphinx-quickstart on Fri Aug 26 16:52:16 2016. # # This file is execfile()d with the current directory set to its # containing dir. # # Note that not all possible configuration values are present in this # autogenerated file. # # All configuration values have a default; values that are commented out # serve to show the default. # If extensions (or modules to document with autodoc) are in another directory, # add these directories to sys.path here. If the directory is relative to the # docs root, use os.path.abspath to make it absolute, like shown here. # import os import subprocess import sys import sphinx_rtd_theme import configparser from datetime import datetime if sys.platform in ["linux", "darwin"]: subprocess.check_output(["make", "generate-api"], cwd=os.path.dirname(os.path.abspath(__file__))) else: subprocess.check_output(["make.bat", "generate-api"], cwd=os.path.dirname(os.path.abspath(__file__))) # -- General configuration ------------------------------------------------ # If your docs needs a minimal Sphinx version, state it here. # # needs_sphinx = '1.0' # Add any Sphinx extension module names here, as strings. They can be # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom # ones. extensions = [ 'sphinx.ext.mathjax', 'sphinx.ext.githubpages', 'sphinx.ext.autodoc', 'sphinxcontrib.napoleon', 'sphinx.ext.todo', 'plantweb.directive', 'sphinxcontrib.programoutput', 'sphinx.ext.intersphinx' ] plantuml = 'plantweb' autodoc_default_options = { 'member-order': 'bysource', 'members': None, 'exclude-members': '__all__' } autodoc_mock_imports = ['emod_api.dtk_tools'] napoleon_google_docstring = True # napoleon_numpy_docstring = True # Add any paths that contain templates here, relative to this directory. templates_path = ['_templates'] # The suffix(es) of source filenames. # You can specify multiple suffix as a list of string: # # source_suffix = ['.rst', '.md'] source_suffix = '.rst' # The encoding of source files. # # source_encoding = 'utf-8-sig' # The master toctree document. master_doc = 'index' # General information about the project. project = u'EMOD-API' copyright = f'1999 - {datetime.today().year}, Bill & Melinda Gates Foundation. All rights reserved.' author = u'Institute for Disease Modeling' # The version info for the project you're documenting, acts as replacement for # |version| and |release|, also used in various other places throughout the # built documents. # # The short X.Y version. #current_path = os.path.dirname(__file__) #version_path = os.path.join(current_path, '..', '.bumpversion.cfg') #config = configparser.ConfigParser() #config.read(version_path) #version = config['bumpversion']['current_version'] # The full version, including alpha/beta/rc tags. # release = u'1.0' # The language for content autogenerated by Sphinx. Refer to docs # for a list of supported languages. # # This is also used if you do content translation via gettext catalogs. # Usually you set "language" from the command line for these cases. language = None # There are two options for replacing |today|: either, you set today to some # non-false value, then it is used: # # today = '' # # Else, today_fmt is used as the format for a strftime call. # # today_fmt = '%B %d, %Y' # List of patterns, relative to source directory, that match files and # directories to ignore when looking for source files. # This patterns also effect to html_static_path and html_extra_path exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store'] # The reST default role (used for this markup: `text`) to use for all # documents. # # default_role = None # If true, '()' will be appended to :func: etc. cross-reference text. # # add_function_parentheses = True # If true, the current module name will be prepended to all description # unit titles (such as .. function::). # # add_module_names = True # If true, sectionauthor and moduleauthor directives will be shown in the # output. They are ignored by default. # # show_authors = False # The name of the Pygments (syntax highlighting) style to use. pygments_style = 'sphinx' # A list of ignored prefixes for module index sorting. # modindex_common_prefix = [] # If true, keep warnings as "system message" paragraphs in the built documents. # keep_warnings = False # If true, `todo` and `todoList` produce output, else they produce nothing. todo_include_todos = False # RST epilog is added to the end of every topic. Useful for replace # directives to use across the docset. rst_epilog = "\n.. include:: /variables.txt" # -- Options for HTML output ---------------------------------------------- # The theme to use for HTML and HTML Help pages. See the docs for # a list of builtin themes. # html_theme = 'sphinx_rtd_theme' # Theme options are theme-specific and customize the look and feel of a theme # further. For a list of options available for each theme, see the # docs. # # # html_theme_options = { # } # Add any paths that contain custom themes here, relative to this directory. html_theme_path = [sphinx_rtd_theme.get_html_theme_path()] # The name for this set of Sphinx documents. # " v docs" by default. # # html_title = u'Sphinx Demo v1.0' # A shorter title for the navigation bar. Default is the same as html_title. # # html_short_title = None # The name of an image file (relative to this directory) to place at the top # of the sidebar. # html_logo = "images/IDM_white.png" # The name of an image file (relative to this directory) to use as a favicon of # the docs. This file should be a Windows icon file (.ico) being 16x16 or 32x32 # pixels large. # html_favicon = "images/favicon.ico" # Add any paths that contain custom static files (such as style sheets) here, # relative to this directory. They are copied after the builtin static files, # so a file named "default.css" will overwrite the builtin "default.css". html_static_path = ['_static'] html_context = { 'css_files': [ '_static/theme_overrides.css' ] } # Add any extra paths that contain custom files (such as robots.txt or # .htaccess) here, relative to this directory. These files are copied # directly to the root of the docs. # # html_extra_path = [] # If not None, a 'Last updated on:' timestamp is inserted at every page # bottom, using the given strftime format. # The empty string is equivalent to '%b %d, %Y'. # # html_last_updated_fmt = None # If true, SmartyPants will be used to convert quotes and dashes to # typographically correct entities. # # html_use_smartypants = True # Custom sidebar templates, maps document names to template names. # # html_sidebars = {} # Additional templates that should be rendered to pages, maps page names to # template names. # # html_additional_pages = {} # If false, no module index is generated. # # html_domain_indices = True # If false, no index is generated. # # html_use_index = True # If true, the index is split into individual pages for each letter. # # html_split_index = False # If true, links to the reST sources are added to the pages. # html_show_sourcelink = False # If true, "Created using Sphinx" is shown in the HTML footer. Default is True. # html_show_sphinx = False # If true, "(C) Copyright ..." is shown in the HTML footer. Default is True. # # html_show_copyright = True # If true, an OpenSearch description file will be output, and all pages will # contain a tag referring to it. The value of this option must be the # base URL from which the finished HTML is served. # html_use_opensearch = 'www.idmod.org/docs/' # This is the file name suffix for HTML files (e.g. ".xhtml"). # html_file_suffix = None # Language to be used for generating the HTML full-text search index. # Sphinx supports the following languages: # 'da', 'de', 'en', 'es', 'fi', 'fr', 'hu', 'it', 'ja' # 'nl', 'no', 'pt', 'ro', 'ru', 'sv', 'tr', 'zh' # # html_search_language = 'en' # A dictionary with options for the search language support, empty by default. # 'ja' uses this config value. # 'zh' user can custom change `jieba` dictionary path. # # html_search_options = {'type': 'default'} # The name of a javascript file (relative to the configuration directory) that # implements a search results scorer. If empty, the default will be used. # # html_search_scorer = 'scorer.js' # Output file base name for HTML help builder. htmlhelp_basename = 'EMOD-API' # -- Options for LaTeX output --------------------------------------------- latex_elements = { # The paper size ('letterpaper' or 'a4paper'). # # 'papersize': 'letterpaper', # The font size ('10pt', '11pt' or '12pt'). # # 'pointsize': '10pt', # Additional stuff for the LaTeX preamble. # # 'preamble': '', # Latex figure (float) alignment # # 'figure_align': 'htbp', } # Grouping the document tree into LaTeX files. List of tuples # (source start file, target name, title, # author, documentclass [howto, manual, or own class]). latex_documents = [ (master_doc, 'emod-api-docs.tex', u'emod-api', u'Institute for Disease Modeling', 'manual'), ] # The name of an image file (relative to this directory) to place at the top of # the title page. # # latex_logo = None # For "manual" documents, if this is true, then toplevel headings are parts, # not chapters. # # latex_use_parts = False # If true, show page references after internal links. # # latex_show_pagerefs = False # If true, show URL addresses after external links. # # latex_show_urls = False # Documents to append as an appendix to all manuals. # # latex_appendices = [] # It false, will not define \strong, \code, itleref, \crossref ... but only # \sphinxstrong, ..., \sphinxtitleref, ... To help avoid clash with user added # packages. # # latex_keep_old_macro_names = True # If false, no module index is generated. # # latex_domain_indices = True # -- Options for manual page output --------------------------------------- # One entry per manual page. List of tuples # (source start file, name, description, authors, manual section). man_pages = [ (master_doc, 'emod-api-docs', u'emod-api', [author], 1) ] # If true, show URL addresses after external links. # man_show_urls = True # -- Options for Texinfo output ------------------------------------------- # Grouping the document tree into Texinfo files. List of tuples # (source start file, target name, title, author, # dir menu entry, description, category) texinfo_documents = [ (master_doc, 'emod-api-docs', u'emod-api', author, 'Institute for Disease Modeling', 'How to use emodpy for disease simulations.', 'Miscellaneous'), ] # Documents to append as an appendix to all manuals. # # texinfo_appendices = [] # If false, no module index is generated. # # texinfo_domain_indices = True # How to display URL addresses: 'footnote', 'no', or 'inline'. # # texinfo_show_urls = 'footnote' # If true, do not generate a @detailmenu in the "Top" node's menu. # # texinfo_no_detailmenu = False # Example configuration for intersphinx: refer to the Python standard library. intersphinx_mapping = {'python': ('https://docs.python.org/3', None), 'emodpy': ('https://docs.idmod.org/projects/emodpy/en/latest/', None), 'idmtools': ('https://docs.idmod.org/projects/idmtools/en/latest/', None), 'pycomps': ('https://docs.idmod.org/projects/pycomps/en/latest/', None) } ########################################################################### # auto-created readthedocs.org specific configuration # ########################################################################### # # The following code was added during an automated build on readthedocs.org # It is auto created and injected for every build. The result is based on the # conf.py.tmpl file found in the readthedocs.org codebase: # https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl # # Note: this file should't rely on extra depencies. import importlib import sys import os.path # Borrowed from six. PY3 = sys.version_info[0] == 3 string_types = str if PY3 else basestring from sphinx import version_info # Get suffix for proper linking to GitHub # This is deprecated in Sphinx 1.3+, # as each page can have its own suffix if globals().get('source_suffix', False): if isinstance(source_suffix, string_types): SUFFIX = source_suffix elif isinstance(source_suffix, (list, tuple)): # Sphinx >= 1.3 supports list/tuple to define multiple suffixes SUFFIX = source_suffix[0] elif isinstance(source_suffix, dict): # Sphinx >= 1.8 supports a mapping dictionary for multiple suffixes SUFFIX = list(source_suffix.keys())[0] # make a ``list()`` for py2/py3 compatibility else: # default to .rst SUFFIX = '.rst' else: SUFFIX = '.rst' # Add RTD Static Path. Add to the end because it overwrites previous files. if not 'html_static_path' in globals(): html_static_path = [] if os.path.exists('_static'): html_static_path.append('_static') # Add RTD Theme only if they aren't overriding it already using_rtd_theme = ( ( 'html_theme' in globals() and html_theme in ['default'] and # Allow people to bail with a hack of having an html_style 'html_style' not in globals() ) or 'html_theme' not in globals() ) if using_rtd_theme: theme = importlib.import_module('sphinx_rtd_theme') html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} if 'html_theme_path' in globals(): html_theme_path.append(theme.get_html_theme_path()) else: html_theme_path = [theme.get_html_theme_path()] if globals().get('websupport2_base_url', False): websupport2_base_url = 'https://readthedocs.com/websupport' websupport2_static_url = 'https://assets.readthedocs.com/' #Add project information to the template context. context = { 'using_theme': using_rtd_theme, 'html_theme': html_theme, 'current_version': "latest", 'version_slug': "latest", 'MEDIA_URL': "https://media.readthedocs.com/media/", 'STATIC_URL': "https://assets.readthedocs.com/", 'PRODUCTION_DOMAIN': "readthedocs.com", 'versions': [ ("latest", "/en/latest/"), ("v1.8.8", "/en/v1.8.8/"), ("v1.8.6", "/en/v1.8.6/"), ("v1.8.2", "/en/v1.8.2/"), ("v1.7.5", "/en/v1.7.5/"), ("v1.7.4", "/en/v1.7.4/"), ("v1.7.1", "/en/v1.7.1/"), ("v1.6.3", "/en/v1.6.3/"), ("v1.5.1", "/en/v1.5.1/"), ("v1.5.0", "/en/v1.5.0/"), ], 'downloads': [ ("pdf", "//docs.idmod.org/_/downloads/emod-api/en/latest/pdf/"), ("html", "//docs.idmod.org/_/downloads/emod-api/en/latest/htmlzip/"), ], 'subprojects': [ ], 'slug': 'institute-for-disease-modeling-emod-api', 'name': u'emod-api', 'rtd_language': u'en', 'programming_language': u'py', 'canonical_url': 'https://docs.idmod.org/projects/emod-api/en/v1.8.8/', 'analytics_code': 'UA-87656833-3', 'single_version': False, 'conf_py_path': '/docs/', 'api_host': 'https://readthedocs.com', 'github_user': 'InstituteforDiseaseModeling', 'proxied_api_host': '/_', 'github_repo': 'emod-api', 'github_version': 'master', 'display_github': True, 'bitbucket_user': 'None', 'bitbucket_repo': 'None', 'bitbucket_version': 'master', 'display_bitbucket': False, 'gitlab_user': 'None', 'gitlab_repo': 'None', 'gitlab_version': 'master', 'display_gitlab': False, 'READTHEDOCS': True, 'using_theme': (html_theme == "default"), 'new_theme': (html_theme == "sphinx_rtd_theme"), 'source_suffix': SUFFIX, 'ad_free': False, 'docsearch_disabled': False, 'user_analytics_code': 'UA-87656833-3', 'global_analytics_code': 'UA-17997319-2', 'commit': 'af701373', } # For sphinx >=1.8 we can use html_baseurl to set the canonical URL. # https://www.sphinx-doc.org/en/master/usage/configuration.html#confval-html_baseurl if version_info >= (1, 8): if not globals().get('html_baseurl'): html_baseurl = context['canonical_url'] context['canonical_url'] = None if 'html_context' in globals(): html_context.update(context) else: html_context = context # Add custom RTD extension if 'extensions' in globals(): # Insert at the beginning because it can interfere # with other extensions. # See https://github.com/rtfd/readthedocs.org/pull/4054 extensions.insert(0, "readthedocs_ext.readthedocs") else: extensions = ["readthedocs_ext.readthedocs"] # Add External version warning banner to the external version documentation if 'branch' == 'external': extensions.insert(1, "readthedocs_ext.external_version_warning") readthedocs_vcs_url = 'None' readthedocs_build_url = 'https://readthedocs.com/projects/institute-for-disease-modeling-emod-api/builds/609211/' project_language = 'en' # User's Sphinx configurations language_user = globals().get('language', None) latex_engine_user = globals().get('latex_engine', None) latex_elements_user = globals().get('latex_elements', None) # Remove this once xindy gets installed in Docker image and XINDYOPS # env variable is supported # https://github.com/rtfd/readthedocs-docker-images/pull/98 latex_use_xindy = False chinese = any([ language_user in ('zh_CN', 'zh_TW'), project_language in ('zh_CN', 'zh_TW'), ]) japanese = any([ language_user == 'ja', project_language == 'ja', ]) if chinese: latex_engine = latex_engine_user or 'xelatex' latex_elements_rtd = { 'preamble': '\\usepackage[UTF8]{ctex}\n', } latex_elements = latex_elements_user or latex_elements_rtd elif japanese: latex_engine = latex_engine_user or 'platex' # Make sure our build directory is always excluded exclude_patterns = globals().get('exclude_patterns', []) exclude_patterns.extend(['_build']) [rtd-command-info] start-time: 2021-04-08T18:24:22.772711Z, end-time: 2021-04-08T18:24:30.272459Z, duration: 7, exit-code: 0 python -m sphinx -T -E -W --keep-going -b html -d _build/doctrees -D language=en . _build/html Running Sphinx v3.2.1 rm: cannot remove 'emod_api_index.rst': No such file or directory rm: cannot remove 'modules.rst': No such file or directory make: [generate-api] Error 1 (ignored) loading translations [en]... done making output directory... done loading intersphinx inventory from https://docs.python.org/3/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emodpy/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/idmtools/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/pycomps/en/latest/objects.inv... building [mo]: targets for 0 po files that are out of date building [html]: targets for 49 source files that are out of date updating environment: [new config] 49 added, 0 changed, 0 removed reading sources... [ 2%] emod_api reading sources... [ 4%] emod_api.campaign reading sources... [ 6%] emod_api.channelreports reading sources... [ 8%] emod_api.channelreports.channels reading sources... [ 10%] emod_api.config reading sources... [ 12%] emod_api.config.default_from_schema reading sources... [ 14%] emod_api.config.default_from_schema_no_validation reading sources... [ 16%] emod_api.config.dtk_post_process_adhocevents reading sources... [ 18%] emod_api.config.dtk_pre_process_adhocevents reading sources... [ 20%] emod_api.config.dtk_pre_process_w5ml reading sources... [ 22%] emod_api.config.from_overrides reading sources... [ 24%] emod_api.config.from_poi_and_binary reading sources... [ 26%] emod_api.config.from_schema reading sources... [ 28%] emod_api.config.schema_to_config emod_api.config.schema_to_config is deprecated. Please use emod_api.config.from_schema. reading sources... [ 30%] emod_api.demographics reading sources... [ 32%] emod_api.demographics.BaseInputFile reading sources... [ 34%] emod_api.demographics.Demographics reading sources... [ 36%] emod_api.demographics.DemographicsGenerator reading sources... [ 38%] emod_api.demographics.DemographicsInputDataParsers reading sources... [ 40%] emod_api.demographics.DemographicsTemplates reading sources... [ 42%] emod_api.demographics.Node reading sources... [ 44%] emod_api.demographics.demographics_utils reading sources... [ 46%] emod_api.demographics.grid_construction reading sources... [ 48%] emod_api.interventions reading sources... [ 51%] emod_api.interventions.common reading sources... [ 53%] emod_api.interventions.import_pressure reading sources... [ 55%] emod_api.interventions.outbreak reading sources... [ 57%] emod_api.interventions.simple_vaccine reading sources... [ 59%] emod_api.interventions.utils reading sources... [ 61%] emod_api.migration reading sources... [ 63%] emod_api.migration.migration reading sources... [ 65%] emod_api.schema reading sources... [ 67%] emod_api.schema.dtk_post_process_schema reading sources... [ 69%] emod_api.schema.get_schema reading sources... [ 71%] emod_api.schema_to_class reading sources... [ 73%] emod_api.serialization reading sources... [ 75%] emod_api.serialization.CensusAndModPop reading sources... [ 77%] emod_api.serialization.SerializedPopulation reading sources... [ 79%] emod_api.serialization.dtkFileSupport reading sources... [ 81%] emod_api.serialization.dtkFileTools reading sources... [ 83%] emod_api.serialization.dtkFileUtility reading sources... [ 85%] emod_api.spatialreports reading sources... [ 87%] emod_api.spatialreports.spatial reading sources... [ 89%] emod_api.tabularoutput reading sources... [ 91%] emod_api.weather reading sources... [ 93%] emod_api.weather.weather reading sources... [ 95%] emod_api_index reading sources... [ 97%] glossary reading sources... [100%] index looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 2%] emod_api writing output... [ 4%] emod_api.campaign writing output... [ 6%] emod_api.channelreports writing output... [ 8%] emod_api.channelreports.channels writing output... [ 10%] emod_api.config writing output... [ 12%] emod_api.config.default_from_schema writing output... [ 14%] emod_api.config.default_from_schema_no_validation writing output... [ 16%] emod_api.config.dtk_post_process_adhocevents writing output... [ 18%] emod_api.config.dtk_pre_process_adhocevents writing output... [ 20%] emod_api.config.dtk_pre_process_w5ml writing output... [ 22%] emod_api.config.from_overrides writing output... [ 24%] emod_api.config.from_poi_and_binary writing output... [ 26%] emod_api.config.from_schema writing output... [ 28%] emod_api.config.schema_to_config writing output... [ 30%] emod_api.demographics writing output... [ 32%] emod_api.demographics.BaseInputFile writing output... [ 34%] emod_api.demographics.Demographics writing output... [ 36%] emod_api.demographics.DemographicsGenerator writing output... [ 38%] emod_api.demographics.DemographicsInputDataParsers writing output... [ 40%] emod_api.demographics.DemographicsTemplates writing output... [ 42%] emod_api.demographics.Node writing output... [ 44%] emod_api.demographics.demographics_utils writing output... [ 46%] emod_api.demographics.grid_construction writing output... [ 48%] emod_api.interventions writing output... [ 51%] emod_api.interventions.common writing output... [ 53%] emod_api.interventions.import_pressure writing output... [ 55%] emod_api.interventions.outbreak writing output... [ 57%] emod_api.interventions.simple_vaccine writing output... [ 59%] emod_api.interventions.utils writing output... [ 61%] emod_api.migration writing output... [ 63%] emod_api.migration.migration writing output... [ 65%] emod_api.schema writing output... [ 67%] emod_api.schema.dtk_post_process_schema writing output... [ 69%] emod_api.schema.get_schema writing output... [ 71%] emod_api.schema_to_class writing output... [ 73%] emod_api.serialization writing output... [ 75%] emod_api.serialization.CensusAndModPop writing output... [ 77%] emod_api.serialization.SerializedPopulation writing output... [ 79%] emod_api.serialization.dtkFileSupport writing output... [ 81%] emod_api.serialization.dtkFileTools writing output... [ 83%] emod_api.serialization.dtkFileUtility writing output... [ 85%] emod_api.spatialreports writing output... [ 87%] emod_api.spatialreports.spatial writing output... [ 89%] emod_api.tabularoutput writing output... [ 91%] emod_api.weather writing output... [ 93%] emod_api.weather.weather writing output... [ 95%] emod_api_index writing output... [ 97%] glossary writing output... [100%] index generating indices... genindex py-modindexdone writing additional pages... search opensearchdone copying static files... ... done copying extra files... done dumping search index in English (code: en)... done dumping object inventory... done build succeeded. The HTML pages are in _build/html. Updating searchtools for Read the Docs search... /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/importlib/_bootstrap.py:219: RuntimeWarning: numpy.ufunc size changed, may indicate binary incompatibility. Expected 192 from C header, got 216 from PyObject return f(*args, **kwds) [rtd-command-info] start-time: 2021-04-08T18:24:30.448872Z, end-time: 2021-04-08T18:24:32.385430Z, duration: 1, exit-code: 0 python -m sphinx -T -W --keep-going -b readthedocssinglehtmllocalmedia -d _build/doctrees -D language=en . _build/localmedia Running Sphinx v3.2.1 rm: cannot remove 'modules.rst': No such file or directory make: [generate-api] Error 1 (ignored) loading translations [en]... done making output directory... done loading pickled environment... done building [mo]: targets for 0 po files that are out of date building [readthedocssinglehtmllocalmedia]: all documents updating environment: 0 added, 1 changed, 0 removed reading sources... [100%] emod_api_index looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done assembling single document... emod_api_index emod_api emod_api.channelreports emod_api.channelreports.channels emod_api.config emod_api.config.default_from_schema emod_api.config.default_from_schema_no_validation emod_api.config.dtk_post_process_adhocevents emod_api.config.dtk_pre_process_adhocevents emod_api.config.dtk_pre_process_w5ml emod_api.config.from_overrides emod_api.config.from_poi_and_binary emod_api.config.from_schema emod_api.config.schema_to_config emod_api.demographics emod_api.demographics.BaseInputFile emod_api.demographics.Demographics emod_api.demographics.DemographicsGenerator emod_api.demographics.DemographicsInputDataParsers emod_api.demographics.DemographicsTemplates emod_api.demographics.Node emod_api.demographics.demographics_utils emod_api.demographics.grid_construction emod_api.interventions emod_api.interventions.common emod_api.interventions.import_pressure emod_api.interventions.outbreak emod_api.interventions.simple_vaccine emod_api.interventions.utils emod_api.migration emod_api.migration.migration emod_api.schema emod_api.schema.dtk_post_process_schema emod_api.schema.get_schema emod_api.serialization emod_api.serialization.CensusAndModPop emod_api.serialization.SerializedPopulation emod_api.serialization.dtkFileSupport emod_api.serialization.dtkFileTools emod_api.serialization.dtkFileUtility emod_api.spatialreports emod_api.spatialreports.spatial emod_api.tabularoutput emod_api.weather emod_api.weather.weather emod_api.campaign emod_api.schema_to_class glossary done writing... done writing additional files... opensearchdone copying static files... ... done copying extra files... done dumping object inventory... done build succeeded. The HTML page is in _build/localmedia. Updating searchtools for Read the Docs search... [rtd-command-info] start-time: 2021-04-08T18:24:32.529249Z, end-time: 2021-04-08T18:24:34.423250Z, duration: 1, exit-code: 0 python -m sphinx -b latex -D language=en -d _build/doctrees . _build/latex Running Sphinx v3.2.1 rm: cannot remove 'modules.rst': No such file or directory make: [generate-api] Error 1 (ignored) loading translations [en]... done making output directory... done loading pickled environment... done building [mo]: targets for 0 po files that are out of date building [latex]: all documents updating environment: 0 added, 1 changed, 0 removed reading sources... [100%] emod_api_index looking for now-outdated files... none found pickling environment... done checking consistency... done processing emod-api-docs.tex... index emod_api_index emod_api emod_api.channelreports emod_api.channelreports.channels emod_api.config emod_api.config.default_from_schema emod_api.config.default_from_schema_no_validation emod_api.config.dtk_post_process_adhocevents emod_api.config.dtk_pre_process_adhocevents emod_api.config.dtk_pre_process_w5ml emod_api.config.from_overrides emod_api.config.from_poi_and_binary emod_api.config.from_schema emod_api.config.schema_to_config emod_api.demographics emod_api.demographics.BaseInputFile emod_api.demographics.Demographics emod_api.demographics.DemographicsGenerator emod_api.demographics.DemographicsInputDataParsers emod_api.demographics.DemographicsTemplates emod_api.demographics.Node emod_api.demographics.demographics_utils emod_api.demographics.grid_construction emod_api.interventions emod_api.interventions.common emod_api.interventions.import_pressure emod_api.interventions.outbreak emod_api.interventions.simple_vaccine emod_api.interventions.utils emod_api.migration emod_api.migration.migration emod_api.schema emod_api.schema.dtk_post_process_schema emod_api.schema.get_schema emod_api.serialization emod_api.serialization.CensusAndModPop emod_api.serialization.SerializedPopulation emod_api.serialization.dtkFileSupport emod_api.serialization.dtkFileTools emod_api.serialization.dtkFileUtility emod_api.spatialreports emod_api.spatialreports.spatial emod_api.tabularoutput emod_api.weather emod_api.weather.weather emod_api.campaign emod_api.schema_to_class glossary resolving references... done writing... done copying TeX support files... copying TeX support files... done build succeeded. The LaTeX files are in _build/latex. Run 'make' in that directory to run these through (pdf)latex (use `make latexpdf' here to do that automatically). WARNING: Missing searchtools: /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/checkouts/latest/docs/_build/latex/_static/searchtools.js [rtd-command-info] start-time: 2021-04-08T18:24:34.632626Z, end-time: 2021-04-08T18:24:34.721310Z, duration: 0, exit-code: 0 cat latexmkrc $latex = 'latex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $pdflatex = 'pdflatex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $lualatex = 'lualatex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $xelatex = 'xelatex --no-pdf ' . $ENV{'LATEXOPTS'} . ' %O %S'; $makeindex = 'makeindex -s python.ist %O -o %D %S'; add_cus_dep( "glo", "gls", 0, "makeglo" ); sub makeglo { return system( "makeindex -s gglo.ist -o '$_[0].gls' '$_[0].glo'" ); } [rtd-command-info] start-time: 2021-04-08T18:24:34.830607Z, end-time: 2021-04-08T18:24:37.141151Z, duration: 2, exit-code: 0 latexmk -r latexmkrc -pdf -f -dvi- -ps- -jobname=institute-for-disease-modeling-emod-api -interaction=nonstopmode Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 1, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 2, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 3, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 4, chunk 1. Subroutine makeglo redefined at (eval 11) line 7, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 1, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 2, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 3, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 4, chunk 1. Latexmk: This is Latexmk, John Collins, 1 January 2015, version: 4.41. File::Glob::glob() will disappear in perl 5.30. Use File::Glob::bsd_glob() instead. at /usr/bin/latexmk line 7482. Rule 'pdflatex': Rules & subrules not known to be previously run: pdflatex Rule 'pdflatex': The following rules & subrules became out-of-date: 'pdflatex' ------------ Run number 1 of rule 'pdflatex' ------------ Latexmk: applying rule 'pdflatex'... ------------ Running 'pdflatex -interaction=nonstopmode -recorder --jobname="institute-for-disease-modeling-emod-api" "emod-api-docs.tex"' ------------ This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./emod-api-docs.tex LaTeX2e <2017-04-15> Babel <3.18> and hyphenation patterns for 84 language(s) loaded. 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(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/hypcap.sty) (./sphinxmessages.sty) Writing index file institute-for-disease-modeling-emod-api.idx (./institute-for-disease-modeling-emod-api.aux) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1ptm.fd) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd)<><><><> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}] [2] [1] [2] [1] [2] Chapter 1. Underfull \hbox (badness 10000) in paragraph at lines 107--109 []\T1/ptm/m/n/10 python -m Underfull \hbox (badness 10000) in paragraph at lines 110--112 []\T1/ptm/m/n/10 python -m (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) [3] Underfull \hbox (badness 10000) in paragraph at lines 236--236 []\T1/ptm/m/it/10 filename: [][]str[][] = None\T1/ptm/m/n/10 , (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [4] Overfull \hbox (73.14464pt too wide) in paragraph at lines 354--354 []\T1/ptm/m/it/10 schema_path_in\T1/ptm/m/n/10 , Overfull \hbox (27.46486pt too wide) in paragraph at lines 354--354 \T1/ptm/m/it/10 subn- Overfull \hbox (43.09444pt too wide) in paragraph at lines 354--354 \T1/ptm/m/it/10 ode_list\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 357--359 []\T1/ptm/m/n/10 config = json.load(open(^^Pdefault_config.json^^Q), ob-ject_ho ok=s2c.ReadOnlyDict) os.remove( ^^Pde- Overfull \hbox (79.14464pt too wide) in paragraph at lines 365--365 []\T1/ptm/m/it/10 path_to_schema\T1/ptm/m/n/10 , Overfull \hbox (96.61464pt too wide) in paragraph at lines 365--365 \T1/ptm/m/it/10 schema_node=True\T1/pcr/m/n/10 ) Overfull \hbox (47.68495pt too wide) in paragraph at lines 375--375 []\T1/ptm/m/it/10 config\T1/pcr/m/n/10 ) Overfull \hbox (114.96484pt too wide) in paragraph at lines 389--389 []\T1/ptm/m/it/10 config_path\T1/ptm/m/n/10 , Overfull \hbox (95.13463pt too wide) in paragraph at lines 389--389 \T1/ptm/m/it/10 set_fn\T1/pcr/m/n/10 ) Overfull \hbox (126.96484pt too wide) in paragraph at lines 415--415 []\T1/ptm/m/it/10 config_path\T1/ptm/m/n/10 , Overfull \hbox (103.63463pt too wide) in paragraph at lines 415--415 \T1/ptm/m/it/10 set_fn\T1/ptm/m/n/10 , Overfull \hbox (95.01491pt too wide) in paragraph at lines 415--415 \T1/ptm/m/it/10 con- Overfull \hbox (133.8048pt too wide) in paragraph at lines 415--415 \T1/ptm/m/it/10 fig_out_path\T1/pcr/m/n/10 ) [5] Overfull \hbox (7.52466pt too wide) in paragraph at lines 453--453 \T1/ptm/m/it/10 hoc_events\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 483--483 []\T1/ptm/m/it/10 configjson_path\T1/ptm/m/n/10 , Overfull \hbox (63.52425pt too wide) in paragraph at lines 512--512 []\T1/ptm/m/it/10 start_config_dict\T1/ptm/m/n/10 , Overfull \hbox (71.87448pt too wide) in paragraph at lines 512--512 \T1/ptm/m/it/10 poi_set_param_fn\T1/pcr/m/n/10 ) Overfull \hbox (66.30441pt too wide) in paragraph at lines 521--521 []\T1/ptm/m/it/10 start_config_path\T1/ptm/m/n/10 , Overfull \hbox (71.87448pt too wide) in paragraph at lines 521--521 \T1/ptm/m/it/10 poi_set_param_fn\T1/pcr/m/n/10 ) Overfull \hbox (18.36475pt too wide) in paragraph at lines 530--530 []\T1/ptm/m/it/10 schema_path\T1/ptm/m/n/10 , Overfull \hbox (41.87448pt too wide) in paragraph at lines 530--530 \T1/ptm/m/it/10 poi_set_param_fn\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 539--539 []\T1/ptm/m/it/10 eradication_path\T1/ptm/m/n/10 , [6] Underfull \hbox (badness 10000) in paragraph at lines 587--589 []\T1/ptm/m/n/10 builder = s2c.SchemaConfigBuilder( Underfull \hbox (badness 10000) in paragraph at lines 596--596 []\T1/ptm/m/it/10 schema_name=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 schema.json\TS1 /ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 596--596 \T1/ptm/m/it/10 model=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 GENERIC_SIM\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 596--596 \T1/ptm/m/it/10 con-fig_out=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 config.json\TS1/p tm/m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (28.28418pt too wide) in paragraph at lines 607--607 []\T1/ptm/m/it/10 schema_name=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 schema.json\TS1 /ptm/m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (11.09424pt too wide) in paragraph at lines 607--607 \T1/ptm/m/it/10 model=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 GENERIC_SIM\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 607--607 \T1/ptm/m/it/10 con- Underfull \hbox (badness 10000) in paragraph at lines 607--607 \T1/ptm/m/it/10 fig_out=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 config.json\TS1/ptm/m /it/10 '\T1/ptm/m/n/10 , LaTeX Warning: Hyper reference `emod_api.config.from_schema:emod_api.config.fro m_schema.SchemaConfigBuilder' on page 7 undefined on input line 608. [7] Underfull \hbox (badness 10000) in paragraph at lines 650--650 []\T1/ptm/m/it/10 lat=0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lon=0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 650--650 \T1/ptm/m/it/10 pop=1000000.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 650--650 \T1/ptm/m/it/10 name=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Erewhon\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 670--670 []\T1/ptm/m/it/10 tot_pop\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 670--670 \T1/ptm/m/it/10 num_nodes\T1/ptm/m/n/10 , Underfull \hbox (badness 8189) in paragraph at lines 676--676 []\T1/ptm/m/it/10 tot_pop=1000000.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 num_nodes=1 00\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 694--694 []\T1/ptm/m/it/10 pop_filename_in\T1/ptm/m/n/10 , Overfull \hbox (28.44351pt too wide) in paragraph at lines 694--694 \T1/ptm/m/it/10 pop_filename_out=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 spatial_grid ded_pop_dir\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 700--700 []\T1/ptm/m/it/10 nodes\T1/ptm/m/n/10 , \T1/ptm/m/it/10 idref=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Gridded Underfull \hbox (badness 10000) in paragraph at lines 700--700 \T1/ptm/m/it/10 world grump2.5arcmin\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , LaTeX Warning: Hyper reference `emod_api.demographics.BaseInputFile:emod_api.de mographics.BaseInputFile.BaseInputFile' on page 8 undefined on input line 701. [8] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pcr.fd) Overfull \hbox (18.60422pt too wide) in paragraph at lines 871--871 []\T1/ptm/m/it/10 res_in_arcsec\T1/pcr/m/n/10 ) Overfull \hbox (13.07484pt too wide) in paragraph at lines 890--890 []\T1/ptm/m/it/10 nodes\T1/ptm/m/n/10 , Overfull \hbox (5.01491pt too wide) in paragraph at lines 890--890 \T1/ptm/m/it/10 con- Overfull \hbox (12.23463pt too wide) in paragraph at lines 890--890 \T1/ptm/m/it/10 cerns: Overfull \hbox (2.79494pt too wide) in paragraph at lines 890--890 \T1/ptm/m/it/10 Op- Overfull \hbox (457.54115pt too wide) in paragraph at lines 890--890 \T1/ptm/m/it/10 tional[Union[emod_api.dtk_tools.demographics.DemographicsGenera torConcern.DemographicsGeneratorConcern, Overfull \hbox (429.49101pt too wide) in paragraph at lines 890--890 \T1/ptm/m/it/10 List[emod_api.dtk_tools.demographics.DemographicsGeneratorConce rn.DemographicsGeneratorConcern]]] Underfull \hbox (badness 10000) in paragraph at lines 890--890 \T1/ptm/m/it/10 = Overfull \hbox (10.85487pt too wide) in paragraph at lines 890--890 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (84.4637pt too wide) in paragraph at lines 890--890 \T1/ptm/m/it/10 res_in_arcsec=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 custom\TS1/ptm/ m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (115.46402pt too wide) in paragraph at lines 890--890 \T1/ptm/m/it/10 node_id_from_lat_long=False\T1/pcr/m/n/10 ) [9] Underfull \hbox (badness 10000) in paragraph at lines 975--975 []\T1/ptm/m/it/10 df\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-mo-graph- Underfull \hbox (badness 10000) in paragraph at lines 975--975 \T1/ptm/m/it/10 ics_filename: Op- Underfull \hbox (badness 10000) in paragraph at lines 975--975 \T1/ptm/m/it/10 tional[[][]str[][]] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 975--975 \T1/ptm/m/it/10 con-cerns: Op- Overfull \hbox (379.54115pt too wide) in paragraph at lines 975--975 \T1/ptm/m/it/10 tional[Union[emod_api.dtk_tools.demographics.DemographicsGenera torConcern.DemographicsGeneratorConcern, Overfull \hbox (351.49101pt too wide) in paragraph at lines 975--975 \T1/ptm/m/it/10 List[emod_api.dtk_tools.demographics.DemographicsGeneratorConce rn.DemographicsGeneratorConcern]]] Underfull \hbox (badness 10000) in paragraph at lines 975--975 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Overfull \hbox (6.4637pt too wide) in paragraph at lines 975--975 \T1/ptm/m/it/10 res_in_arcsec=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 custom\TS1/ptm/ m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (30.83415pt too wide) in paragraph at lines 975--975 \T1/ptm/m/it/10 node_id_from_lat_long=True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 975--975 \T1/ptm/m/it/10 de-fault_population: Underfull \hbox (badness 10000) in paragraph at lines 975--975 [][]\T1/ptm/m/it/10 int[][] = 1000\T1/ptm/m/n/10 , Overfull \hbox (79.21327pt too wide) in paragraph at lines 975--975 \T1/ptm/m/it/10 load_other_columns_as_attributes=False\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 975--975 \T1/ptm/m/it/10 tional[List[[][]str[][]]] Underfull \hbox (badness 10000) in paragraph at lines 975--975 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ex- Underfull \hbox (badness 10000) in paragraph at lines 975--975 \T1/ptm/m/it/10 clude_columns: Underfull \hbox (badness 10000) in paragraph at lines 975--975 \T1/ptm/m/it/10 Op-tional[List[[][]str[][]]] Underfull \hbox (badness 10000) in paragraph at lines 975--975 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Overfull \hbox (0.89452pt too wide) in paragraph at lines 975--975 \T1/ptm/m/it/10 nodeid_column_name: Underfull \hbox (badness 10000) in paragraph at lines 975--975 \T1/ptm/m/it/10 Op-tional[[][]str[][]] Underfull \hbox (badness 10000) in paragraph at lines 975--975 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lat-i- Underfull \hbox (badness 10000) in paragraph at lines 975--975 \T1/ptm/m/it/10 tude_column_name: Underfull \hbox (badness 10000) in paragraph at lines 975--975 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 lat\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lon-gi- Underfull \hbox (badness 10000) in paragraph at lines 975--975 \T1/ptm/m/it/10 tude_column_name: Underfull \hbox (badness 10000) in paragraph at lines 975--975 \T1/ptm/m/it/10 tion_column_name: [10] Overfull \hbox (54.94496pt too wide) in paragraph at lines 990--991 []\T1/pcr/b/n/10 apply. If not specified, we use the DefaultWorldBankEquilibriu mConcern [11] Underfull \hbox (badness 10000) in paragraph at lines 1038--1038 []\T1/ptm/m/it/10 population_input_file: Underfull \hbox (badness 10000) in paragraph at lines 1038--1038 [][]\T1/ptm/m/it/10 str[][]\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-mo-graph- Underfull \hbox (badness 7851) in paragraph at lines 1038--1038 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 con-cerns: Op- Overfull \hbox (349.54115pt too wide) in paragraph at lines 1038--1038 \T1/ptm/m/it/10 tional[Union[emod_api.dtk_tools.demographics.DemographicsGenera torConcern.DemographicsGeneratorConcern, Overfull \hbox (321.49101pt too wide) in paragraph at lines 1038--1038 \T1/ptm/m/it/10 List[emod_api.dtk_tools.demographics.DemographicsGeneratorConce rn.DemographicsGeneratorConcern]]] Underfull \hbox (badness 10000) in paragraph at lines 1038--1038 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1038--1038 \T1/ptm/m/it/10 res_in_arcsec=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 custom\TS1/ptm/ m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (0.83415pt too wide) in paragraph at lines 1038--1038 \T1/ptm/m/it/10 node_id_from_lat_long=True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1038--1038 \T1/ptm/m/it/10 de-fault_population: Underfull \hbox (badness 10000) in paragraph at lines 1038--1038 [][]\T1/ptm/m/it/10 int[][] = 1000\T1/ptm/m/n/10 , Overfull \hbox (49.21327pt too wide) in paragraph at lines 1038--1038 \T1/ptm/m/it/10 load_other_columns_as_attributes=False\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1038--1038 \T1/ptm/m/it/10 in-clude_columns: Op- Underfull \hbox (badness 10000) in paragraph at lines 1038--1038 \T1/ptm/m/it/10 tional[List[[][]str[][]]] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1038--1038 \T1/ptm/m/it/10 ex-clude_columns: Op- Underfull \hbox (badness 10000) in paragraph at lines 1038--1038 \T1/ptm/m/it/10 tional[List[[][]str[][]]] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1038--1038 \T1/ptm/m/it/10 nodeid_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1038--1038 \T1/ptm/m/it/10 Op-tional[[][]str[][]] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1038--1038 \T1/ptm/m/it/10 lat-i-tude_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1038--1038 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 lat\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lon-gi- Underfull \hbox (badness 10000) in paragraph at lines 1038--1038 \T1/ptm/m/it/10 tude_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1038--1038 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 lon\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pop-u-la- Underfull \hbox (badness 6236) in paragraph at lines 1038--1038 \T1/ptm/m/it/10 tion_column_name: [][]str[][] = Overfull \hbox (54.94496pt too wide) in paragraph at lines 1053--1054 []\T1/pcr/b/n/10 apply. If not specified, we use the DefaultWorldBankEquilibriu mConcern [12] Overfull \hbox (6.3048pt too wide) in paragraph at lines 1109--1109 []\T1/ptm/m/it/10 lat\T1/ptm/m/n/10 , Overfull \hbox (13.5249pt too wide) in paragraph at lines 1109--1109 \T1/ptm/m/it/10 long\T1/ptm/m/n/10 , Overfull \hbox (115.34473pt too wide) in paragraph at lines 1109--1109 \T1/ptm/m/it/10 res=0.008333333333333333\T1/pcr/m/n/10 ) Overfull \hbox (37.09444pt too wide) in paragraph at lines 1115--1115 []\T1/ptm/m/it/10 nodelist\T1/pcr/m/n/10 ) Overfull \hbox (11.74474pt too wide) in paragraph at lines 1121--1121 []\T1/ptm/m/it/10 node_info\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1121--1121 \T1/ptm/m/it/10 De- Underfull \hbox (badness 10000) in paragraph at lines 1121--1121 \T1/ptm/m/it/10 moDf\T1/ptm/m/n/10 , Overfull \hbox (91.34473pt too wide) in paragraph at lines 1121--1121 \T1/ptm/m/it/10 res=0.008333333333333333\T1/pcr/m/n/10 ) Overfull \hbox (71.74474pt too wide) in paragraph at lines 1127--1127 []\T1/ptm/m/it/10 node_info\T1/ptm/m/n/10 , Overfull \hbox (41.2549pt too wide) in paragraph at lines 1127--1127 \T1/ptm/m/it/10 ex- Overfull \hbox (118.90427pt too wide) in paragraph at lines 1127--1127 \T1/ptm/m/it/10 tra_data_columns=[]\T1/ptm/m/n/10 , Overfull \hbox (151.34473pt too wide) in paragraph at lines 1127--1127 \T1/ptm/m/it/10 res=0.008333333333333333\T1/pcr/m/n/10 ) [13] Underfull \hbox (badness 10000) in paragraph at lines 1188--1188 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , \T1/ptm/m/it/10 min=0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1200--1202 []\T1/ptm/m/n/10 json ob-ject aka python dict that can be di-rectly passed to D e-mo-graph- Overfull \hbox (22.30493pt too wide) in paragraph at lines 1244--1244 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Overfull \hbox (7.6847pt too wide) in paragraph at lines 1244--1244 \T1/ptm/m/it/10 set- Overfull \hbox (34.0548pt too wide) in paragraph at lines 1244--1244 \T1/ptm/m/it/10 ting=1.0\T1/pcr/m/n/10 ) Overfull \hbox (10.30493pt too wide) in paragraph at lines 1250--1250 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1250--1250 \T1/ptm/m/it/10 pro- Overfull \hbox (58.54413pt too wide) in paragraph at lines 1250--1250 \T1/ptm/m/it/10 tected_setting=0.0\T1/ptm/m/n/10 , Overfull \hbox (9.20457pt too wide) in paragraph at lines 1250--1250 \T1/ptm/m/it/10 thresh- Overfull \hbox (53.51486pt too wide) in paragraph at lines 1250--1250 \T1/ptm/m/it/10 old_age=1825.0\T1/pcr/m/n/10 ) Overfull \hbox (46.30493pt too wide) in paragraph at lines 1256--1256 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Overfull \hbox (42.23488pt too wide) in paragraph at lines 1256--1256 \T1/ptm/m/it/10 mean- Overfull \hbox (44.91478pt too wide) in paragraph at lines 1256--1256 \T1/ptm/m/it/10 AgeAt- Overfull \hbox (28.90492pt too wide) in paragraph at lines 1256--1256 \T1/ptm/m/it/10 In- Overfull \hbox (32.23474pt too wide) in paragraph at lines 1256--1256 \T1/ptm/m/it/10 fec- Overfull \hbox (58.0548pt too wide) in paragraph at lines 1256--1256 \T1/ptm/m/it/10 tion=2.5\T1/pcr/m/n/10 ) Overfull \hbox (55.80493pt too wide) in paragraph at lines 1262--1262 []\T1/ptm/m/it/10 demog\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1268--1268 []\T1/ptm/m/it/10 AgeBins\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Mor- Overfull \hbox (88.30493pt too wide) in paragraph at lines 1300--1300 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Overfull \hbox (87.57472pt too wide) in paragraph at lines 1300--1300 \T1/ptm/m/it/10 Crude- Overfull \hbox (124.88449pt too wide) in paragraph at lines 1300--1300 \T1/ptm/m/it/10 BirthRate=0.04\T1/ptm/m/n/10 , Overfull \hbox (87.57472pt too wide) in paragraph at lines 1300--1300 \T1/ptm/m/it/10 Crude- Overfull \hbox (79.59486pt too wide) in paragraph at lines 1300--1300 \T1/ptm/m/it/10 Mor- Overfull \hbox (110.60472pt too wide) in paragraph at lines 1300--1300 \T1/ptm/m/it/10 tRate=0.02\T1/pcr/m/n/10 ) [14] Underfull \hbox (badness 10000) in paragraph at lines 1306--1306 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1306--1306 \T1/ptm/m/it/10 start=100\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1306--1306 \T1/ptm/m/it/10 end=330\T1/ptm/m/n/10 , \T1/ptm/m/it/10 fac- Underfull \hbox (badness 10000) in paragraph at lines 1309--1312 []\T1/ptm/m/n/10 Requires con-fig en-ables in-fec-tiv-ity scal-ing: e.g.: `En-a ble_Infectivity_Scaling': 1, `En- Overfull \hbox (22.9045pt too wide) in paragraph at lines 1393--1393 []\T1/ptm/m/it/10 nodeid\T1/ptm/m/n/10 , \T1/ptm/m/it/10 res_in_deg=0.041666666 666666664\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1399--1399 []\T1/ptm/m/it/10 lat\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lon\T1/ptm/m/n/10 , Overfull \hbox (9.16464pt too wide) in paragraph at lines 1399--1399 \T1/ptm/m/it/10 res_in_deg=0.041666666666666664\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1405--1405 []\T1/ptm/m/it/10 lat\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lon\T1/ptm/m/n/10 , [15] Underfull \hbox (badness 10000) in paragraph at lines 1434--1435 []\T1/pcr/b/n/10 distribution \T1/ptm/m/n/10 ^^U The se-lected dis-tri-bu-tion (need to come from Underfull \hbox (badness 10000) in paragraph at lines 1454--1454 []\T1/ptm/m/it/10 filename\T1/ptm/m/n/10 , \T1/ptm/m/it/10 dis-tri-bu-tion\T1/p tm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1455--1456 \T1/ptm/m/n/10 Set the \T1/pcr/m/n/10 ImmunityDistributionFlag\T1/ptm/m/n/10 , \T1/pcr/m/n/10 ImmunityDistribution1 \T1/ptm/m/n/10 and Underfull \hbox (badness 10000) in paragraph at lines 1482--1482 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1482--1482 \T1/ptm/m/it/10 fn\T1/ptm/m/n/10 , [16] Underfull \hbox (badness 10000) in paragraph at lines 1552--1552 []\T1/ptm/m/it/10 cb\T1/ptm/m/n/10 , Overfull \hbox (28.70406pt too wide) in paragraph at lines 1552--1552 \T1/ptm/m/it/10 use_existing=False\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1578--1578 []\T1/ptm/m/it/10 cb\T1/ptm/m/n/10 , Overfull \hbox (34.70406pt too wide) in paragraph at lines 1578--1578 \T1/ptm/m/it/10 use_existing=False\T1/pcr/m/n/10 ) LaTeX Warning: Hyper reference `emod_api.demographics.demographics_utils:emod_a pi.demographics.demographics_utils.set_static_demographics' on page 17 undefine d on input line 1579. [17] Underfull \hbox (badness 10000) in paragraph at lines 1650--1650 []\T1/ptm/m/it/10 point\T1/ptm/m/n/10 , Overfull \hbox (37.41425pt too wide) in paragraph at lines 1650--1650 \T1/ptm/m/it/10 grid_id_2_cell_id\T1/ptm/m/n/10 , LaTeX Warning: Hyper reference `emod_api.schema_to_class:emod_api.schema_to_cla ss.ReadOnlyDict' on page 18 undefined on input line 1682. Underfull \hbox (badness 10000) in paragraph at lines 1691--1691 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Event_Trigger\T1/ptm/m/n /10 , Overfull \hbox (73.22345pt too wide) in paragraph at lines 1691--1691 \T1/ptm/m/it/10 Node_Selection_Type=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 DISTANCE_ ONLY\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (57.50374pt too wide) in paragraph at lines 1691--1691 \T1/ptm/m/it/10 Max_Distance_To_Other_Nodes_Km=- LaTeX Warning: Hyper reference `emod_api.schema_to_class:emod_api.schema_to_cla ss.ReadOnlyDict' on page 18 undefined on input line 1717. Underfull \hbox (badness 10000) in paragraph at lines 1726--1726 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 In-ter-ven- [18] LaTeX Warning: Hyper reference `emod_api.schema_to_class:emod_api.schema_to_cla ss.ReadOnlyDict' on page 19 undefined on input line 1746. Underfull \hbox (badness 10000) in paragraph at lines 1769--1770 []\T1/pcr/b/n/10 but without the distribution, which is inferred. E.g., LaTeX Warning: Hyper reference `emod_api.schema_to_class:emod_api.schema_to_cla ss.ReadOnlyDict' on page 19 undefined on input line 1781. Underfull \hbox (badness 10000) in paragraph at lines 1790--1790 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Event_Or_Config=\TS1/ptm /m/it/10 '\T1/ptm/m/it/10 Event\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/ 10 Con-fig=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1790--1790 \T1/ptm/m/it/10 Event=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 NoTrigger\TS1/ptm/m/it/ 10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Ten-dency=1.0\T1/ptm/m/n/10 , \T1/ptm/m/it /10 Sin-gle_Use=True\T1/ptm/m/n/10 , LaTeX Warning: Hyper reference `emod_api.schema_to_class:emod_api.schema_to_cla ss.ReadOnlyDict' on page 19 undefined on input line 1825. Underfull \hbox (badness 10000) in paragraph at lines 1834--1834 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Trig-gers\T1/ptm/m/n/10 , \T1/ptm/m/it/10 In-ter-ven-tions\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Prop- Underfull \hbox (badness 6775) in paragraph at lines 1834--1834 \T1/ptm/m/it/10 erty_Restrictions=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 De-mo-gr aphic_Coverage=1.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1834--1834 \T1/ptm/m/it/10 Tar-get_Demographic=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Everyone\ TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar-get_Age_Min=0\T1/ptm/m/n/ 10 , Underfull \hbox (badness 10000) in paragraph at lines 1834--1834 \T1/ptm/m/it/10 Tar-get_Age_Max=45625\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar-get_G ender=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 All\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1834--1834 \T1/ptm/m/it/10 Tar-get_Residents_Only=1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Durati on=- 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Black- Underfull \hbox (badness 10000) in paragraph at lines 1834--1834 \T1/ptm/m/it/10 out_Event_Trigger=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Blackout_Ev ent_Trigger\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Black- Underfull \hbox (badness 10000) in paragraph at lines 1834--1834 \T1/ptm/m/it/10 out_Period=0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Black-out_On_First _Occurrence=0\T1/ptm/m/n/10 , [19] LaTeX Warning: Hyper reference `emod_api.schema_to_class:emod_api.schema_to_cla ss.ReadOnlyDict' on page 20 undefined on input line 1890. Underfull \hbox (badness 10000) in paragraph at lines 1899--1899 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar-get_Property_Key\T1/ ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1899--1899 \T1/ptm/m/it/10 Tar-get_Property_Value\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1899--1899 \T1/ptm/m/it/10 New_Property_Value\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1899--1899 \T1/ptm/m/it/10 Daily_Probability=1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Max-i- Underfull \hbox (badness 10000) in paragraph at lines 1899--1899 \T1/ptm/m/it/10 In-ter-ven-tion_Name=\TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1899--1899 \T1/ptm/m/it/10 Event_Trigger_Distributed=\TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , LaTeX Warning: Hyper reference `emod_api.schema_to_class:emod_api.schema_to_cla ss.ReadOnlyDict' on page 20 undefined on input line 1910. Underfull \hbox (badness 10000) in paragraph at lines 1919--1919 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Start_Day\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Node- Underfull \hbox (badness 10000) in paragraph at lines 1919--1919 \T1/ptm/m/it/10 set_Config\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Num- Underfull \hbox (badness 10000) in paragraph at lines 1919--1919 \T1/ptm/m/it/10 ber_Repetitions=1\T1/ptm/m/n/10 , Overfull \hbox (11.65335pt too wide) in paragraph at lines 1919--1919 \T1/ptm/m/it/10 Timesteps_Between_Repetitions=- Underfull \hbox (badness 10000) in paragraph at lines 1919--1919 \T1/ptm/m/it/10 1\T1/ptm/m/n/10 , Overfull \hbox (53.26375pt too wide) in paragraph at lines 1919--1919 \T1/ptm/m/it/10 Event_Name=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Scheduled_Campaign _Event\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (17.59343pt too wide) in paragraph at lines 1919--1919 \T1/ptm/m/it/10 Node_Property_Restrictions=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1919--1919 \T1/ptm/m/it/10 Prop- Underfull \hbox (badness 10000) in paragraph at lines 1919--1919 \T1/ptm/m/it/10 erty_Restrictions=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar- Underfull \hbox (badness 10000) in paragraph at lines 1919--1919 \T1/ptm/m/it/10 get_Demographic=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Everyone\TS1/ ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1919--1919 \T1/ptm/m/it/10 De-mo-graphic_Coverage=1.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1919--1919 \T1/ptm/m/it/10 Tar-get_Age_Min=0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar- Underfull \hbox (badness 10000) in paragraph at lines 1919--1919 \T1/ptm/m/it/10 get_Age_Max=45625\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar- Underfull \hbox (badness 10000) in paragraph at lines 1919--1919 \T1/ptm/m/it/10 get_Gender=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 All\TS1/ptm/m/it/1 0 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 In-ter-ven- [20] LaTeX Warning: Hyper reference `emod_api.schema_to_class:emod_api.schema_to_cla ss.ReadOnlyDict' on page 21 undefined on input line 1976. 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(rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc}< /usr/share/texlive/texmf-dist/fonts/type1/urw/courier/ucrr8a.pfb>< /usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmri8a.pfb> Output written on institute-for-disease-modeling-emod-api.pdf (43 pages, 224904 bytes). Transcript written on institute-for-disease-modeling-emod-api.log. Latexmk: Index file 'institute-for-disease-modeling-emod-api.idx' was written Latexmk: Missing input file: 'institute-for-disease-modeling-emod-api.ind' from line 'No file institute-for-disease-modeling-emod-api.ind.' Latexmk: References changed. Latexmk: References changed. Latexmk: Log file says output to 'institute-for-disease-modeling-emod-api.pdf' Latexmk: Log file says output to 'institute-for-disease-modeling-emod-api.pdf' Latexmk: List of undefined refs and citations: Reference `emod_api.campaign:module-emod_api.campaign' on page 39 undefined on input line 3640 Reference `emod_api.channelreports.channels:module-emod_api.channelreports.channels' on page 39 undefined on input line 3642 Reference `emod_api.channelreports:module-emod_api.channelreports' on page 39 undefined on input line 3641 Reference `emod_api.config.default_from_schema:module-emod_api.config.default_from_schema' on page 39 undefined on input line 3644 Reference `emod_api.config.default_from_schema_no_validation:module-emod_api.config.default_from_schema_no_validation' on page 39 undefined on input line 3645 Reference `emod_api.config.dtk_post_process_adhocevents:module-emod_api.config.dtk_post_process_adhocevents' on page 39 undefined on input line 3646 Reference `emod_api.config.dtk_pre_process_adhocevents:module-emod_api.config.dtk_pre_process_adhocevents' on page 39 undefined on input line 3647 Reference `emod_api.config.dtk_pre_process_w5ml:module-emod_api.config.dtk_pre_process_w5ml' on page 39 undefined on input line 3648 Reference `emod_api.config.from_overrides:module-emod_api.config.from_overrides' on page 39 undefined on input line 3649 Reference `emod_api.config.from_poi_and_binary:module-emod_api.config.from_poi_and_binary' on page 39 undefined on input line 3650 Reference `emod_api.config.from_schema:module-emod_api.config.from_schema' on page 39 undefined on input line 3651 Reference `emod_api.config.schema_to_config:module-emod_api.config.schema_to_config' on page 39 undefined on input line 3652 Reference `emod_api.config:module-emod_api.config' on page 39 undefined on input line 3643 Reference `emod_api.demographics.BaseInputFile:module-emod_api.demographics.BaseInputFile' on page 39 undefined on input line 3654 Reference `emod_api.demographics.Demographics:module-emod_api.demographics.Demographics' on page 39 undefined on input line 3655 Reference `emod_api.demographics.DemographicsGenerator:module-emod_api.demographics.DemographicsGenerator' on page 39 undefined on input line 3657 Reference `emod_api.demographics.DemographicsInputDataParsers:module-emod_api.demographics.DemographicsInputDataParsers' on page 39 undefined on input line 3658 Reference `emod_api.demographics.DemographicsTemplates:module-emod_api.demographics.DemographicsTemplates' on page 39 undefined on input line 3659 Reference `emod_api.demographics.Node:module-emod_api.demographics.Node' on page 39 undefined on input line 3661 Reference `emod_api.demographics.demographics_utils:module-emod_api.demographics.demographics_utils' on page 39 undefined on input line 3656 Reference `emod_api.demographics.grid_construction:module-emod_api.demographics.grid_construction' on page 39 undefined on input line 3660 Reference `emod_api.demographics:module-emod_api.demographics' on page 39 undefined on input line 3653 Reference `emod_api.interventions.common:module-emod_api.interventions.common' on page 39 undefined on input line 3663 Reference `emod_api.interventions.import_pressure:module-emod_api.interventions.import_pressure' on page 39 undefined on input line 3664 Reference `emod_api.interventions.outbreak:module-emod_api.interventions.outbreak' on page 39 undefined on input line 3665 Reference `emod_api.interventions.simple_vaccine:module-emod_api.interventions.simple_vaccine' on page 39 undefined on input line 3666 Reference `emod_api.interventions.utils:module-emod_api.interventions.utils' on page 39 undefined on input line 3667 Reference `emod_api.interventions:module-emod_api.interventions' on page 39 undefined on input line 3662 Reference `emod_api.migration.migration:module-emod_api.migration.migration' on page 39 undefined on input line 3669 Reference `emod_api.migration:module-emod_api.migration' on page 39 undefined on input line 3668 Reference `emod_api.schema.dtk_post_process_schema:module-emod_api.schema.dtk_post_process_schema' on page 39 undefined on input line 3671 Reference `emod_api.schema.get_schema:module-emod_api.schema.get_schema' on page 39 undefined on input line 3672 Reference `emod_api.schema:module-emod_api.schema' on page 39 undefined on input line 3670 Reference `emod_api.schema_to_class:module-emod_api.schema_to_class' on page 39 undefined on input line 3673 Reference `emod_api.serialization.CensusAndModPop:module-emod_api.serialization.CensusAndModPop' on page 39 undefined on input line 3675 Reference `emod_api.serialization.SerializedPopulation:module-emod_api.serialization.SerializedPopulation' on page 39 undefined on input line 3679 Reference `emod_api.serialization.dtkFileSupport:module-emod_api.serialization.dtkFileSupport' on page 39 undefined on input line 3676 Reference `emod_api.serialization.dtkFileTools:module-emod_api.serialization.dtkFileTools' on page 39 undefined on input line 3677 Reference `emod_api.serialization.dtkFileUtility:module-emod_api.serialization.dtkFileUtility' on page 39 undefined on input line 3678 Reference `emod_api.serialization:module-emod_api.serialization' on page 39 undefined on input line 3674 Reference `emod_api.spatialreports.spatial:module-emod_api.spatialreports.spatial' on page 39 undefined on input line 3681 Reference `emod_api.spatialreports:module-emod_api.spatialreports' on page 39 undefined on input line 3680 Reference `emod_api.tabularoutput:module-emod_api.tabularoutput' on page 39 undefined on input line 3682 Reference `emod_api.weather.weather:module-emod_api.weather.weather' on page 39 undefined on input line 3684 Reference `emod_api.weather:module-emod_api.weather' on page 39 undefined on input line 3683 Reference `emod_api:module-emod_api' on page 39 undefined on input line 3639 Latexmk: Summary of warnings: Latex failed to resolve 46 reference(s) Rule 'makeindex institute-for-disease-modeling-emod-api.idx': File changes, etc: Non-existent destination files: 'institute-for-disease-modeling-emod-api.ind' ------------ Run number 1 of rule 'makeindex institute-for-disease-modeling-emod-api.idx' ------------ ------------ Running 'makeindex -s python.ist -o "institute-for-disease-modeling-emod-api.ind" "institute-for-disease-modeling-emod-api.idx"' ------------ Latexmk: applying rule 'makeindex institute-for-disease-modeling-emod-api.idx'... This is makeindex, version 2.15 [TeX Live 2017] (kpathsea + Thai support). Scanning style file ./python.ist.......done (7 attributes redefined, 0 ignored). Scanning input file institute-for-disease-modeling-emod-api.idx....done (408 entries accepted, 0 rejected). Sorting entries......done (3772 comparisons). Generating output file institute-for-disease-modeling-emod-api.ind....done (790 lines written, 0 warnings). Output written in institute-for-disease-modeling-emod-api.ind. Transcript written in institute-for-disease-modeling-emod-api.ilg. Rule 'pdflatex': File changes, etc: Changed files, or newly in use since previous run(s): 'institute-for-disease-modeling-emod-api.aux' 'institute-for-disease-modeling-emod-api.ind' ------------ Run number 2 of rule 'pdflatex' ------------ ------------ Running 'pdflatex -interaction=nonstopmode -recorder --jobname="institute-for-disease-modeling-emod-api" "emod-api-docs.tex"' ------------ Latexmk: applying rule 'pdflatex'... 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(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) (./institute-for-disease-modeling-emod-api.out) (./institute-for-disease-modeling-emod-api.out) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd)<><><><> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}] [2] (./institute-for-disease-modeling-emod-api.toc) [1] [2] [1] [2] Chapter 1. Underfull \hbox (badness 10000) in paragraph at lines 107--109 []\T1/ptm/m/n/10 python -m Underfull \hbox (badness 10000) in paragraph at lines 110--112 []\T1/ptm/m/n/10 python -m (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) [3] Underfull \hbox (badness 10000) in paragraph at lines 236--236 []\T1/ptm/m/it/10 filename: [][]str[][] = None\T1/ptm/m/n/10 , (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [4] Overfull \hbox (73.14464pt too wide) in paragraph at lines 354--354 []\T1/ptm/m/it/10 schema_path_in\T1/ptm/m/n/10 , Overfull \hbox (27.46486pt too wide) in paragraph at lines 354--354 \T1/ptm/m/it/10 subn- Overfull \hbox (43.09444pt too wide) in paragraph at lines 354--354 \T1/ptm/m/it/10 ode_list\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 357--359 []\T1/ptm/m/n/10 config = json.load(open(^^Pdefault_config.json^^Q), ob-ject_ho ok=s2c.ReadOnlyDict) os.remove( ^^Pde- Overfull \hbox (79.14464pt too wide) in paragraph at lines 365--365 []\T1/ptm/m/it/10 path_to_schema\T1/ptm/m/n/10 , Overfull \hbox (96.61464pt too wide) in paragraph at lines 365--365 \T1/ptm/m/it/10 schema_node=True\T1/pcr/m/n/10 ) Overfull \hbox (47.68495pt too wide) in paragraph at lines 375--375 []\T1/ptm/m/it/10 config\T1/pcr/m/n/10 ) Overfull \hbox (114.96484pt too wide) in paragraph at lines 389--389 []\T1/ptm/m/it/10 config_path\T1/ptm/m/n/10 , Overfull \hbox (95.13463pt too wide) in paragraph at lines 389--389 \T1/ptm/m/it/10 set_fn\T1/pcr/m/n/10 ) Overfull \hbox (126.96484pt too wide) in paragraph at lines 415--415 []\T1/ptm/m/it/10 config_path\T1/ptm/m/n/10 , Overfull \hbox (103.63463pt too wide) in paragraph at lines 415--415 \T1/ptm/m/it/10 set_fn\T1/ptm/m/n/10 , Overfull \hbox (95.01491pt too wide) in paragraph at lines 415--415 \T1/ptm/m/it/10 con- Overfull \hbox (133.8048pt too wide) in paragraph at lines 415--415 \T1/ptm/m/it/10 fig_out_path\T1/pcr/m/n/10 ) [5] Overfull \hbox (7.52466pt too wide) in paragraph at lines 453--453 \T1/ptm/m/it/10 hoc_events\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 483--483 []\T1/ptm/m/it/10 configjson_path\T1/ptm/m/n/10 , Overfull \hbox (63.52425pt too wide) in paragraph at lines 512--512 []\T1/ptm/m/it/10 start_config_dict\T1/ptm/m/n/10 , Overfull \hbox (71.87448pt too wide) in paragraph at lines 512--512 \T1/ptm/m/it/10 poi_set_param_fn\T1/pcr/m/n/10 ) Overfull \hbox (66.30441pt too wide) in paragraph at lines 521--521 []\T1/ptm/m/it/10 start_config_path\T1/ptm/m/n/10 , Overfull \hbox (71.87448pt too wide) in paragraph at lines 521--521 \T1/ptm/m/it/10 poi_set_param_fn\T1/pcr/m/n/10 ) Overfull \hbox (18.36475pt too wide) in paragraph at lines 530--530 []\T1/ptm/m/it/10 schema_path\T1/ptm/m/n/10 , Overfull \hbox (41.87448pt too wide) in paragraph at lines 530--530 \T1/ptm/m/it/10 poi_set_param_fn\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 539--539 []\T1/ptm/m/it/10 eradication_path\T1/ptm/m/n/10 , [6] Underfull \hbox (badness 10000) in paragraph at lines 587--589 []\T1/ptm/m/n/10 builder = s2c.SchemaConfigBuilder( Underfull \hbox (badness 10000) in paragraph at lines 596--596 []\T1/ptm/m/it/10 schema_name=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 schema.json\TS1 /ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 596--596 \T1/ptm/m/it/10 model=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 GENERIC_SIM\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 596--596 \T1/ptm/m/it/10 con-fig_out=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 config.json\TS1/p tm/m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (28.28418pt too wide) in paragraph at lines 607--607 []\T1/ptm/m/it/10 schema_name=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 schema.json\TS1 /ptm/m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (11.09424pt too wide) in paragraph at lines 607--607 \T1/ptm/m/it/10 model=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 GENERIC_SIM\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 607--607 \T1/ptm/m/it/10 con- Underfull \hbox (badness 10000) in paragraph at lines 607--607 \T1/ptm/m/it/10 fig_out=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 config.json\TS1/ptm/m /it/10 '\T1/ptm/m/n/10 , [7] Underfull \hbox (badness 10000) in paragraph at lines 650--650 []\T1/ptm/m/it/10 lat=0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lon=0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 650--650 \T1/ptm/m/it/10 pop=1000000.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 650--650 \T1/ptm/m/it/10 name=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Erewhon\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 670--670 []\T1/ptm/m/it/10 tot_pop\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 670--670 \T1/ptm/m/it/10 num_nodes\T1/ptm/m/n/10 , Underfull \hbox (badness 8189) in paragraph at lines 676--676 []\T1/ptm/m/it/10 tot_pop=1000000.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 num_nodes=1 00\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 694--694 []\T1/ptm/m/it/10 pop_filename_in\T1/ptm/m/n/10 , Overfull \hbox (28.44351pt too wide) in paragraph at lines 694--694 \T1/ptm/m/it/10 pop_filename_out=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 spatial_grid ded_pop_dir\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 700--700 []\T1/ptm/m/it/10 nodes\T1/ptm/m/n/10 , \T1/ptm/m/it/10 idref=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Gridded Underfull \hbox (badness 10000) in paragraph at lines 700--700 \T1/ptm/m/it/10 world grump2.5arcmin\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , [8] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pcr.fd) Overfull \hbox (18.60422pt too wide) in paragraph at lines 871--871 []\T1/ptm/m/it/10 res_in_arcsec\T1/pcr/m/n/10 ) Overfull \hbox (13.07484pt too wide) in paragraph at lines 890--890 []\T1/ptm/m/it/10 nodes\T1/ptm/m/n/10 , Overfull \hbox (5.01491pt too wide) in paragraph at lines 890--890 \T1/ptm/m/it/10 con- Overfull \hbox (12.23463pt too wide) in paragraph at lines 890--890 \T1/ptm/m/it/10 cerns: Overfull \hbox (2.79494pt too wide) in paragraph at lines 890--890 \T1/ptm/m/it/10 Op- Overfull \hbox (457.54115pt too wide) in paragraph at lines 890--890 \T1/ptm/m/it/10 tional[Union[emod_api.dtk_tools.demographics.DemographicsGenera torConcern.DemographicsGeneratorConcern, Overfull \hbox (429.49101pt too wide) in paragraph at lines 890--890 \T1/ptm/m/it/10 List[emod_api.dtk_tools.demographics.DemographicsGeneratorConce rn.DemographicsGeneratorConcern]]] Underfull \hbox (badness 10000) in paragraph at lines 890--890 \T1/ptm/m/it/10 = Overfull \hbox (10.85487pt too wide) in paragraph at lines 890--890 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , Overfull \hbox (84.4637pt too wide) in paragraph at lines 890--890 \T1/ptm/m/it/10 res_in_arcsec=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 custom\TS1/ptm/ m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (115.46402pt too wide) in paragraph at lines 890--890 \T1/ptm/m/it/10 node_id_from_lat_long=False\T1/pcr/m/n/10 ) [9] Underfull \hbox (badness 10000) in paragraph at lines 975--975 []\T1/ptm/m/it/10 df\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-mo-graph- Underfull \hbox (badness 10000) in paragraph at lines 975--975 \T1/ptm/m/it/10 ics_filename: Op- Underfull \hbox (badness 10000) in paragraph at lines 975--975 \T1/ptm/m/it/10 tional[[][]str[][]] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 975--975 \T1/ptm/m/it/10 con-cerns: Op- Overfull \hbox (379.54115pt too wide) in paragraph at lines 975--975 \T1/ptm/m/it/10 tional[Union[emod_api.dtk_tools.demographics.DemographicsGenera torConcern.DemographicsGeneratorConcern, Overfull \hbox (351.49101pt too wide) in paragraph at lines 975--975 \T1/ptm/m/it/10 List[emod_api.dtk_tools.demographics.DemographicsGeneratorConce rn.DemographicsGeneratorConcern]]] Underfull \hbox (badness 10000) in paragraph at lines 975--975 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Overfull \hbox (6.4637pt too wide) in paragraph at lines 975--975 \T1/ptm/m/it/10 res_in_arcsec=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 custom\TS1/ptm/ m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (30.83415pt too wide) in paragraph at lines 975--975 \T1/ptm/m/it/10 node_id_from_lat_long=True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 975--975 \T1/ptm/m/it/10 de-fault_population: Underfull \hbox (badness 10000) in paragraph at lines 975--975 [][]\T1/ptm/m/it/10 int[][] = 1000\T1/ptm/m/n/10 , Overfull \hbox (79.21327pt too wide) in paragraph at lines 975--975 \T1/ptm/m/it/10 load_other_columns_as_attributes=False\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 975--975 \T1/ptm/m/it/10 tional[List[[][]str[][]]] Underfull \hbox (badness 10000) in paragraph at lines 975--975 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ex- Underfull \hbox (badness 10000) in paragraph at lines 975--975 \T1/ptm/m/it/10 clude_columns: Underfull \hbox (badness 10000) in paragraph at lines 975--975 \T1/ptm/m/it/10 Op-tional[List[[][]str[][]]] Underfull \hbox (badness 10000) in paragraph at lines 975--975 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Overfull \hbox (0.89452pt too wide) in paragraph at lines 975--975 \T1/ptm/m/it/10 nodeid_column_name: Underfull \hbox (badness 10000) in paragraph at lines 975--975 \T1/ptm/m/it/10 Op-tional[[][]str[][]] Underfull \hbox (badness 10000) in paragraph at lines 975--975 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lat-i- Underfull \hbox (badness 10000) in paragraph at lines 975--975 \T1/ptm/m/it/10 tude_column_name: Underfull \hbox (badness 10000) in paragraph at lines 975--975 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 lat\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lon-gi- Underfull \hbox (badness 10000) in paragraph at lines 975--975 \T1/ptm/m/it/10 tude_column_name: Underfull \hbox (badness 10000) in paragraph at lines 975--975 \T1/ptm/m/it/10 tion_column_name: [10] Overfull \hbox (54.94496pt too wide) in paragraph at lines 990--991 []\T1/pcr/b/n/10 apply. If not specified, we use the DefaultWorldBankEquilibriu mConcern [11] Underfull \hbox (badness 10000) in paragraph at lines 1038--1038 []\T1/ptm/m/it/10 population_input_file: Underfull \hbox (badness 10000) in paragraph at lines 1038--1038 [][]\T1/ptm/m/it/10 str[][]\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-mo-graph- Underfull \hbox (badness 7851) in paragraph at lines 1038--1038 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 con-cerns: Op- Overfull \hbox (349.54115pt too wide) in paragraph at lines 1038--1038 \T1/ptm/m/it/10 tional[Union[emod_api.dtk_tools.demographics.DemographicsGenera torConcern.DemographicsGeneratorConcern, Overfull \hbox (321.49101pt too wide) in paragraph at lines 1038--1038 \T1/ptm/m/it/10 List[emod_api.dtk_tools.demographics.DemographicsGeneratorConce rn.DemographicsGeneratorConcern]]] Underfull \hbox (badness 10000) in paragraph at lines 1038--1038 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1038--1038 \T1/ptm/m/it/10 res_in_arcsec=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 custom\TS1/ptm/ m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (0.83415pt too wide) in paragraph at lines 1038--1038 \T1/ptm/m/it/10 node_id_from_lat_long=True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1038--1038 \T1/ptm/m/it/10 de-fault_population: Underfull \hbox (badness 10000) in paragraph at lines 1038--1038 [][]\T1/ptm/m/it/10 int[][] = 1000\T1/ptm/m/n/10 , Overfull \hbox (49.21327pt too wide) in paragraph at lines 1038--1038 \T1/ptm/m/it/10 load_other_columns_as_attributes=False\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1038--1038 \T1/ptm/m/it/10 in-clude_columns: Op- Underfull \hbox (badness 10000) in paragraph at lines 1038--1038 \T1/ptm/m/it/10 tional[List[[][]str[][]]] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1038--1038 \T1/ptm/m/it/10 ex-clude_columns: Op- Underfull \hbox (badness 10000) in paragraph at lines 1038--1038 \T1/ptm/m/it/10 tional[List[[][]str[][]]] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1038--1038 \T1/ptm/m/it/10 nodeid_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1038--1038 \T1/ptm/m/it/10 Op-tional[[][]str[][]] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1038--1038 \T1/ptm/m/it/10 lat-i-tude_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1038--1038 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 lat\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lon-gi- Underfull \hbox (badness 10000) in paragraph at lines 1038--1038 \T1/ptm/m/it/10 tude_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1038--1038 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 lon\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pop-u-la- Underfull \hbox (badness 6236) in paragraph at lines 1038--1038 \T1/ptm/m/it/10 tion_column_name: [][]str[][] = Overfull \hbox (54.94496pt too wide) in paragraph at lines 1053--1054 []\T1/pcr/b/n/10 apply. If not specified, we use the DefaultWorldBankEquilibriu mConcern [12] Overfull \hbox (6.3048pt too wide) in paragraph at lines 1109--1109 []\T1/ptm/m/it/10 lat\T1/ptm/m/n/10 , Overfull \hbox (13.5249pt too wide) in paragraph at lines 1109--1109 \T1/ptm/m/it/10 long\T1/ptm/m/n/10 , Overfull \hbox (115.34473pt too wide) in paragraph at lines 1109--1109 \T1/ptm/m/it/10 res=0.008333333333333333\T1/pcr/m/n/10 ) Overfull \hbox (37.09444pt too wide) in paragraph at lines 1115--1115 []\T1/ptm/m/it/10 nodelist\T1/pcr/m/n/10 ) Overfull \hbox (11.74474pt too wide) in paragraph at lines 1121--1121 []\T1/ptm/m/it/10 node_info\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1121--1121 \T1/ptm/m/it/10 De- Underfull \hbox (badness 10000) in paragraph at lines 1121--1121 \T1/ptm/m/it/10 moDf\T1/ptm/m/n/10 , Overfull \hbox (91.34473pt too wide) in paragraph at lines 1121--1121 \T1/ptm/m/it/10 res=0.008333333333333333\T1/pcr/m/n/10 ) Overfull \hbox (71.74474pt too wide) in paragraph at lines 1127--1127 []\T1/ptm/m/it/10 node_info\T1/ptm/m/n/10 , Overfull \hbox (41.2549pt too wide) in paragraph at lines 1127--1127 \T1/ptm/m/it/10 ex- Overfull \hbox (118.90427pt too wide) in paragraph at lines 1127--1127 \T1/ptm/m/it/10 tra_data_columns=[]\T1/ptm/m/n/10 , Overfull \hbox (151.34473pt too wide) in paragraph at lines 1127--1127 \T1/ptm/m/it/10 res=0.008333333333333333\T1/pcr/m/n/10 ) [13] Underfull \hbox (badness 10000) in paragraph at lines 1188--1188 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , \T1/ptm/m/it/10 min=0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1200--1202 []\T1/ptm/m/n/10 json ob-ject aka python dict that can be di-rectly passed to D e-mo-graph- Overfull \hbox (22.30493pt too wide) in paragraph at lines 1244--1244 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Overfull \hbox (7.6847pt too wide) in paragraph at lines 1244--1244 \T1/ptm/m/it/10 set- Overfull \hbox (34.0548pt too wide) in paragraph at lines 1244--1244 \T1/ptm/m/it/10 ting=1.0\T1/pcr/m/n/10 ) Overfull \hbox (10.30493pt too wide) in paragraph at lines 1250--1250 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1250--1250 \T1/ptm/m/it/10 pro- Overfull \hbox (58.54413pt too wide) in paragraph at lines 1250--1250 \T1/ptm/m/it/10 tected_setting=0.0\T1/ptm/m/n/10 , Overfull \hbox (9.20457pt too wide) in paragraph at lines 1250--1250 \T1/ptm/m/it/10 thresh- Overfull \hbox (53.51486pt too wide) in paragraph at lines 1250--1250 \T1/ptm/m/it/10 old_age=1825.0\T1/pcr/m/n/10 ) Overfull \hbox (46.30493pt too wide) in paragraph at lines 1256--1256 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Overfull \hbox (42.23488pt too wide) in paragraph at lines 1256--1256 \T1/ptm/m/it/10 mean- Overfull \hbox (44.91478pt too wide) in paragraph at lines 1256--1256 \T1/ptm/m/it/10 AgeAt- Overfull \hbox (28.90492pt too wide) in paragraph at lines 1256--1256 \T1/ptm/m/it/10 In- Overfull \hbox (32.23474pt too wide) in paragraph at lines 1256--1256 \T1/ptm/m/it/10 fec- Overfull \hbox (58.0548pt too wide) in paragraph at lines 1256--1256 \T1/ptm/m/it/10 tion=2.5\T1/pcr/m/n/10 ) Overfull \hbox (55.80493pt too wide) in paragraph at lines 1262--1262 []\T1/ptm/m/it/10 demog\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1268--1268 []\T1/ptm/m/it/10 AgeBins\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Mor- Overfull \hbox (88.30493pt too wide) in paragraph at lines 1300--1300 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Overfull \hbox (87.57472pt too wide) in paragraph at lines 1300--1300 \T1/ptm/m/it/10 Crude- Overfull \hbox (124.88449pt too wide) in paragraph at lines 1300--1300 \T1/ptm/m/it/10 BirthRate=0.04\T1/ptm/m/n/10 , Overfull \hbox (87.57472pt too wide) in paragraph at lines 1300--1300 \T1/ptm/m/it/10 Crude- Overfull \hbox (79.59486pt too wide) in paragraph at lines 1300--1300 \T1/ptm/m/it/10 Mor- Overfull \hbox (110.60472pt too wide) in paragraph at lines 1300--1300 \T1/ptm/m/it/10 tRate=0.02\T1/pcr/m/n/10 ) [14] Underfull \hbox (badness 10000) in paragraph at lines 1306--1306 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1306--1306 \T1/ptm/m/it/10 start=100\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1306--1306 \T1/ptm/m/it/10 end=330\T1/ptm/m/n/10 , \T1/ptm/m/it/10 fac- Underfull \hbox (badness 10000) in paragraph at lines 1309--1312 []\T1/ptm/m/n/10 Requires con-fig en-ables in-fec-tiv-ity scal-ing: e.g.: `En-a ble_Infectivity_Scaling': 1, `En- Overfull \hbox (22.9045pt too wide) in paragraph at lines 1393--1393 []\T1/ptm/m/it/10 nodeid\T1/ptm/m/n/10 , \T1/ptm/m/it/10 res_in_deg=0.041666666 666666664\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1399--1399 []\T1/ptm/m/it/10 lat\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lon\T1/ptm/m/n/10 , Overfull \hbox (9.16464pt too wide) in paragraph at lines 1399--1399 \T1/ptm/m/it/10 res_in_deg=0.041666666666666664\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1405--1405 []\T1/ptm/m/it/10 lat\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lon\T1/ptm/m/n/10 , [15] Underfull \hbox (badness 10000) in paragraph at lines 1434--1435 []\T1/pcr/b/n/10 distribution \T1/ptm/m/n/10 ^^U The se-lected dis-tri-bu-tion (need to come from Underfull \hbox (badness 10000) in paragraph at lines 1454--1454 []\T1/ptm/m/it/10 filename\T1/ptm/m/n/10 , \T1/ptm/m/it/10 dis-tri-bu-tion\T1/p tm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1455--1456 \T1/ptm/m/n/10 Set the \T1/pcr/m/n/10 ImmunityDistributionFlag\T1/ptm/m/n/10 , \T1/pcr/m/n/10 ImmunityDistribution1 \T1/ptm/m/n/10 and Underfull \hbox (badness 10000) in paragraph at lines 1482--1482 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1482--1482 \T1/ptm/m/it/10 fn\T1/ptm/m/n/10 , [16] Underfull \hbox (badness 10000) in paragraph at lines 1552--1552 []\T1/ptm/m/it/10 cb\T1/ptm/m/n/10 , Overfull \hbox (28.70406pt too wide) in paragraph at lines 1552--1552 \T1/ptm/m/it/10 use_existing=False\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1578--1578 []\T1/ptm/m/it/10 cb\T1/ptm/m/n/10 , Overfull \hbox (34.70406pt too wide) in paragraph at lines 1578--1578 \T1/ptm/m/it/10 use_existing=False\T1/pcr/m/n/10 ) [17] Underfull \hbox (badness 10000) in paragraph at lines 1650--1650 []\T1/ptm/m/it/10 point\T1/ptm/m/n/10 , Overfull \hbox (37.41425pt too wide) in paragraph at lines 1650--1650 \T1/ptm/m/it/10 grid_id_2_cell_id\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1691--1691 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Event_Trigger\T1/ptm/m/n /10 , Overfull \hbox (73.22345pt too wide) in paragraph at lines 1691--1691 \T1/ptm/m/it/10 Node_Selection_Type=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 DISTANCE_ ONLY\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (57.50374pt too wide) in paragraph at lines 1691--1691 \T1/ptm/m/it/10 Max_Distance_To_Other_Nodes_Km=- Underfull \hbox (badness 10000) in paragraph at lines 1726--1726 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 In-ter-ven- [18] Underfull \hbox (badness 10000) in paragraph at lines 1769--1770 []\T1/pcr/b/n/10 but without the distribution, which is inferred. E.g., Underfull \hbox (badness 10000) in paragraph at lines 1790--1790 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Event_Or_Config=\TS1/ptm /m/it/10 '\T1/ptm/m/it/10 Event\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/ 10 Con-fig=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1790--1790 \T1/ptm/m/it/10 Event=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 NoTrigger\TS1/ptm/m/it/ 10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Ten-dency=1.0\T1/ptm/m/n/10 , \T1/ptm/m/it /10 Sin-gle_Use=True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1834--1834 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Trig-gers\T1/ptm/m/n/10 , \T1/ptm/m/it/10 In-ter-ven-tions\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Prop- Underfull \hbox (badness 6775) in paragraph at lines 1834--1834 \T1/ptm/m/it/10 erty_Restrictions=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 De-mo-gr aphic_Coverage=1.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1834--1834 \T1/ptm/m/it/10 Tar-get_Demographic=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Everyone\ TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar-get_Age_Min=0\T1/ptm/m/n/ 10 , Underfull \hbox (badness 10000) in paragraph at lines 1834--1834 \T1/ptm/m/it/10 Tar-get_Age_Max=45625\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar-get_G ender=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 All\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1834--1834 \T1/ptm/m/it/10 Tar-get_Residents_Only=1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Durati on=- 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Black- Underfull \hbox (badness 10000) in paragraph at lines 1834--1834 \T1/ptm/m/it/10 out_Event_Trigger=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Blackout_Ev ent_Trigger\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Black- Underfull \hbox (badness 10000) in paragraph at lines 1834--1834 \T1/ptm/m/it/10 out_Period=0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Black-out_On_First _Occurrence=0\T1/ptm/m/n/10 , [19] Underfull \hbox (badness 10000) in paragraph at lines 1899--1899 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar-get_Property_Key\T1/ ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1899--1899 \T1/ptm/m/it/10 Tar-get_Property_Value\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1899--1899 \T1/ptm/m/it/10 New_Property_Value\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1899--1899 \T1/ptm/m/it/10 Daily_Probability=1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Max-i- Underfull \hbox (badness 10000) in paragraph at lines 1899--1899 \T1/ptm/m/it/10 In-ter-ven-tion_Name=\TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1899--1899 \T1/ptm/m/it/10 Event_Trigger_Distributed=\TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1919--1919 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Start_Day\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Node- Underfull \hbox (badness 10000) in paragraph at lines 1919--1919 \T1/ptm/m/it/10 set_Config\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Num- Underfull \hbox (badness 10000) in paragraph at lines 1919--1919 \T1/ptm/m/it/10 ber_Repetitions=1\T1/ptm/m/n/10 , Overfull \hbox (11.65335pt too wide) in paragraph at lines 1919--1919 \T1/ptm/m/it/10 Timesteps_Between_Repetitions=- Underfull \hbox (badness 10000) in paragraph at lines 1919--1919 \T1/ptm/m/it/10 1\T1/ptm/m/n/10 , Overfull \hbox (53.26375pt too wide) in paragraph at lines 1919--1919 \T1/ptm/m/it/10 Event_Name=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Scheduled_Campaign _Event\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (17.59343pt too wide) in paragraph at lines 1919--1919 \T1/ptm/m/it/10 Node_Property_Restrictions=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1919--1919 \T1/ptm/m/it/10 Prop- Underfull \hbox (badness 10000) in paragraph at lines 1919--1919 \T1/ptm/m/it/10 erty_Restrictions=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar- Underfull \hbox (badness 10000) in paragraph at lines 1919--1919 \T1/ptm/m/it/10 get_Demographic=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Everyone\TS1/ ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1919--1919 \T1/ptm/m/it/10 De-mo-graphic_Coverage=1.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1919--1919 \T1/ptm/m/it/10 Tar-get_Age_Min=0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar- Underfull \hbox (badness 10000) in paragraph at lines 1919--1919 \T1/ptm/m/it/10 get_Age_Max=45625\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar- Underfull \hbox (badness 10000) in paragraph at lines 1919--1919 \T1/ptm/m/it/10 get_Gender=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 All\TS1/ptm/m/it/1 0 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 In-ter-ven- [20] Underfull \hbox (badness 10000) in paragraph at lines 1985--1985 \T1/ptm/m/it/10 Node-set_Config\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Trig- Underfull \hbox (badness 10000) in paragraph at lines 1985--1985 \T1/ptm/m/it/10 gers\T1/ptm/m/n/10 , \T1/ptm/m/it/10 In-ter-ven-tion_List\T1/pt m/m/n/10 , Overfull \hbox (17.59343pt too wide) in paragraph at lines 1985--1985 \T1/ptm/m/it/10 Node_Property_Restrictions=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1985--1985 \T1/ptm/m/it/10 Prop-erty_Restrictions=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1985--1985 \T1/ptm/m/it/10 Num-ber_Repetitions=1\T1/ptm/m/n/10 , Overfull \hbox (11.65335pt too wide) in paragraph at lines 1985--1985 \T1/ptm/m/it/10 Timesteps_Between_Repetitions=- Underfull \hbox (badness 10000) in paragraph at lines 1985--1985 \T1/ptm/m/it/10 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 De-mo- Underfull \hbox (badness 10000) in paragraph at lines 1985--1985 \T1/ptm/m/it/10 graphic_Coverage=1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar- Underfull \hbox (badness 10000) in paragraph at lines 1985--1985 \T1/ptm/m/it/10 get_Demographic=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Everyone\TS1/ ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1985--1985 \T1/ptm/m/it/10 Tar-get_Age_Min=0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar- Underfull \hbox (badness 10000) in paragraph at lines 1985--1985 \T1/ptm/m/it/10 get_Age_Max=45625\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1985--1985 \T1/ptm/m/it/10 Tar-get_Gender=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 All\TS1/ptm/m/ it/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar- Underfull \hbox (badness 10000) in paragraph at lines 1985--1985 \T1/ptm/m/it/10 get_Residents_Only=1\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1985--1985 \T1/ptm/m/it/10 Duration=- 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Black- Overfull \hbox (59.96321pt too wide) in paragraph at lines 1985--1985 \T1/ptm/m/it/10 out_Event_Trigger=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Blackout_Ev ent_Trigger\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1985--1985 \T1/ptm/m/it/10 Black-out_Period=0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Black- Underfull \hbox (badness 10000) in paragraph at lines 1985--1985 \T1/ptm/m/it/10 out_On_First_Occurrence=0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1985--1985 \T1/ptm/m/it/10 Dis-qual-i-fy- Underfull \hbox (badness 10000) in paragraph at lines 1985--1985 \T1/ptm/m/it/10 ing_Properties=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 De- [21] [22] Underfull \hbox (badness 10000) in paragraph at lines 2069--2069 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Base_Sensitivity=1\T1/pt m/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2069--2069 \T1/ptm/m/it/10 Base_Specificity=1\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2069--2069 \T1/ptm/m/it/10 Days_To_Diagnosis=0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2069--2069 \T1/ptm/m/it/10 Treat-ment_Fraction=1\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2116--2116 []\T1/ptm/m/it/10 timestep\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cam-paign_hook\T1/pt m/m/n/10 , \T1/ptm/m/it/10 cov-er- [23] Underfull \hbox (badness 10000) in paragraph at lines 2159--2159 \T1/ptm/m/it/10 ef-fi-cacy=1.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2159--2159 \T1/ptm/m/it/10 sv_name=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Vaccine\TS1/ptm/m/it/ 10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2159--2159 \T1/ptm/m/it/10 wan-ing_duration=100\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2180--2180 []\T1/ptm/m/it/10 timestep\T1/ptm/m/n/10 , \T1/ptm/m/it/10 file- Underfull \hbox (badness 10000) in paragraph at lines 2197--2197 []\T1/ptm/m/it/10 schema_path\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ini-tial=1.0\T1/p tm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2197--2197 \T1/ptm/m/it/10 box_duration=365\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de- [24] Underfull \hbox (badness 5548) in paragraph at lines 2272--2275 []\T1/ptm/m/n/10 EMOD/DTK for-mat mi-gra-tion files (and as-so-ci-ated meta-dat a files) can be writ-ten with mi-gra- [25] Underfull \hbox (badness 10000) in paragraph at lines 2538--2538 \T1/ptm/m/it/10 num_nodes=100\T1/ptm/m/n/10 , \T1/ptm/m/it/10 mig_factor=1.0\T1 /ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2538--2538 \T1/ptm/m/it/10 frac_rural=0.3\T1/ptm/m/n/10 , \T1/ptm/m/it/10 id_ref=\TS1/ptm/ m/it/10 '\T1/ptm/m/it/10 from_params\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm/ m/it/10 mi- [26] Overfull \hbox (2.15437pt too wide) in paragraph at lines 2549--2549 []\T1/ptm/m/it/10 demographics_file_path\T1/ptm/m/n/10 , Overfull \hbox (24.70302pt too wide) in paragraph at lines 2587--2587 []\T1/ptm/m/it/10 path_to_binary\T1/ptm/m/n/10 , \T1/ptm/m/it/10 path_to_write_ schema=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 schema.json\TS1/ptm/m/it/10 '\T1/pcr/m /n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 2608--2608 []\T1/ptm/m/it/10 input_serpop_path\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2608--2608 \T1/ptm/m/it/10 mod_fn=None\T1/ptm/m/n/10 , [27] Underfull \hbox (badness 10000) in paragraph at lines 2629--2629 []\T1/ptm/m/it/10 file: [28] Underfull \hbox (badness 10000) in paragraph at lines 2755--2755 []\T1/ptm/m/it/10 name: [][]str[][]\T1/ptm/m/n/10 , \T1/ptm/m/it/10 han-dle\T1/ ptm/m/n/10 , \T1/ptm/m/it/10 cur- Underfull \hbox (badness 10000) in paragraph at lines 2790--2790 []\T1/ptm/m/it/10 handle\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cur- [29] Underfull \hbox (badness 7944) in paragraph at lines 2911--2911 \T1/ptm/m/it/10 True, \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 date\TS1/ptm/m/it/10 '\ T1/ptm/m/it/10 : \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Thu Apr 08 Underfull \hbox (badness 5050) in paragraph at lines 2911--2911 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 tool\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 : \TS1/ ptm/m/it/10 '\T1/ptm/m/it/10 dtk-File-Tools.py\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 , \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 ver- [30] Underfull \hbox (badness 10000) in paragraph at lines 3027--3027 []\T1/ptm/m/it/10 header={\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 author\TS1/ptm/m/it /10 '\T1/ptm/m/it/10 : \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 un-known\TS1/ptm/m/it/ 10 '\T1/ptm/m/it/10 , Underfull \hbox (badness 6493) in paragraph at lines 3027--3027 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 byte-count\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 : 0, \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 chunkcount\TS1/ptm/m/it/10 '\T1/ptm/m/it/ 10 : Underfull \hbox (badness 10000) in paragraph at lines 3027--3027 \T1/ptm/m/it/10 0, \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 chunk-sizes\TS1/ptm/m/it/1 0 '\T1/ptm/m/it/10 : [], \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 com- Underfull \hbox (badness 6575) in paragraph at lines 3027--3027 \T1/ptm/m/it/10 08 18:24:27 2021\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 , \TS1/ptm/m/ it/10 '\T1/ptm/m/it/10 en-gine\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 : Underfull \hbox (badness 10000) in paragraph at lines 3027--3027 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 ver-sion\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 : 1 }\T1/ptm/m/n/10 , \T1/ptm/m/it/10 file-name=\TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3041--3041 []\T1/ptm/m/it/10 header={\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 author\TS1/ptm/m/it /10 '\T1/ptm/m/it/10 : \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 un-known\TS1/ptm/m/it/ 10 '\T1/ptm/m/it/10 , Underfull \hbox (badness 6493) in paragraph at lines 3041--3041 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 byte-count\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 : 0, \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 chunkcount\TS1/ptm/m/it/10 '\T1/ptm/m/it/ 10 : Underfull \hbox (badness 10000) in paragraph at lines 3041--3041 \T1/ptm/m/it/10 0, \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 chunk-sizes\TS1/ptm/m/it/1 0 '\T1/ptm/m/it/10 : [], \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 com- Underfull \hbox (badness 6575) in paragraph at lines 3041--3041 \T1/ptm/m/it/10 08 18:24:27 2021\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 , \TS1/ptm/m/ it/10 '\T1/ptm/m/it/10 en-gine\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 : Underfull \hbox (badness 10000) in paragraph at lines 3041--3041 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 ver-sion\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 : 1 }\T1/ptm/m/n/10 , \T1/ptm/m/it/10 file-name=\TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3063--3063 []\T1/ptm/m/it/10 header={\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 author\TS1/ptm/m/it /10 '\T1/ptm/m/it/10 : \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 un-known\TS1/ptm/m/it/ 10 '\T1/ptm/m/it/10 , Underfull \hbox (badness 6493) in paragraph at lines 3063--3063 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 byte-count\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 : 0, \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 chunkcount\TS1/ptm/m/it/10 '\T1/ptm/m/it/ 10 : Underfull \hbox (badness 10000) in paragraph at lines 3063--3063 \T1/ptm/m/it/10 0, \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 chunk-sizes\TS1/ptm/m/it/1 0 '\T1/ptm/m/it/10 : [], \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 com- Underfull \hbox (badness 6575) in paragraph at lines 3063--3063 \T1/ptm/m/it/10 08 18:24:27 2021\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 , \TS1/ptm/m/ it/10 '\T1/ptm/m/it/10 en-gine\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 : Underfull \hbox (badness 10000) in paragraph at lines 3063--3063 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 ver-sion\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 : 1 }\T1/ptm/m/n/10 , \T1/ptm/m/it/10 file-name=\TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , [31] Underfull \hbox (badness 10000) in paragraph at lines 3085--3085 []\T1/ptm/m/it/10 header={\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 author\TS1/ptm/m/it /10 '\T1/ptm/m/it/10 : \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 un-known\TS1/ptm/m/it/ 10 '\T1/ptm/m/it/10 , Underfull \hbox (badness 6493) in paragraph at lines 3085--3085 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 byte-count\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 : 0, \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 chunkcount\TS1/ptm/m/it/10 '\T1/ptm/m/it/ 10 : Underfull \hbox (badness 10000) in paragraph at lines 3085--3085 \T1/ptm/m/it/10 0, \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 chunk-sizes\TS1/ptm/m/it/1 0 '\T1/ptm/m/it/10 : [], \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 com- Underfull \hbox (badness 6575) in paragraph at lines 3085--3085 \T1/ptm/m/it/10 08 18:24:27 2021\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 , \TS1/ptm/m/ it/10 '\T1/ptm/m/it/10 en-gine\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 : Underfull \hbox (badness 10000) in paragraph at lines 3085--3085 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 ver-sion\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 : 1 }\T1/ptm/m/n/10 , \T1/ptm/m/it/10 file-name=\TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3145--3145 \T1/ptm/m/it/10 List[[][]int[][]] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 data: Underfull \hbox (badness 10000) in paragraph at lines 3145--3145 \T1/ptm/m/it/10 numpy.array = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start: [32] [33] [34] [35] [36] Chapter 2. [37] [38] Overfull \hbox (66.6225pt too wide) in paragraph at lines 3645--3646 []\T1/pcr/m/n/10 emod_api.config.default_from_schema_no_validation\T1/ptm/m/n/1 0 , Overfull \hbox (36.6225pt too wide) in paragraph at lines 3646--3647 []\T1/pcr/m/n/10 emod_api.config.dtk_post_process_adhocevents\T1/ptm/m/n/10 , Overfull \hbox (30.6225pt too wide) in paragraph at lines 3647--3648 []\T1/pcr/m/n/10 emod_api.config.dtk_pre_process_adhocevents\T1/ptm/m/n/10 , Overfull \hbox (12.6225pt too wide) in paragraph at lines 3656--3657 []\T1/pcr/m/n/10 emod_api.demographics.demographics_utils\T1/ptm/m/n/10 , Overfull \hbox (30.6225pt too wide) in paragraph at lines 3657--3658 []\T1/pcr/m/n/10 emod_api.demographics.DemographicsGenerator\T1/ptm/m/n/10 , Overfull \hbox (72.6225pt too wide) in paragraph at lines 3658--3659 []\T1/pcr/m/n/10 emod_api.demographics.DemographicsInputDataParsers\T1/ptm/m/n/ 10 , Overfull \hbox (30.6225pt too wide) in paragraph at lines 3659--3660 []\T1/pcr/m/n/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 , Overfull \hbox (6.6225pt too wide) in paragraph at lines 3660--3661 []\T1/pcr/m/n/10 emod_api.demographics.grid_construction\T1/ptm/m/n/10 , Overfull \hbox (0.6225pt too wide) in paragraph at lines 3664--3665 []\T1/pcr/m/n/10 emod_api.interventions.import_pressure\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3666--3667 []\T1/pcr/m/n/10 emod_api.interventions.simple_vaccine\T1/ptm/m/n/10 , Overfull \hbox (6.6225pt too wide) in paragraph at lines 3671--3672 []\T1/pcr/m/n/10 emod_api.schema.dtk_post_process_schema\T1/ptm/m/n/10 , Overfull \hbox (0.6225pt too wide) in paragraph at lines 3675--3676 []\T1/pcr/m/n/10 emod_api.serialization.CensusAndModPop\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3676--3677 []\T1/pcr/m/n/10 emod_api.serialization.dtkFileSupport\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3678--3679 []\T1/pcr/m/n/10 emod_api.serialization.dtkFileUtility\T1/ptm/m/n/10 , Overfull \hbox (30.6225pt too wide) in paragraph at lines 3679--3680 []\T1/pcr/m/n/10 emod_api.serialization.SerializedPopulation\T1/ptm/m/n/10 , [39] (./institute-for-disease-modeling-emod-api.ind [40] Underfull \hbox (badness 10000) in paragraph at lines 9--11 []\T1/pcr/m/n/10 AddAgeDependentTransmission() Overfull \hbox (34.06111pt too wide) in paragraph at lines 9--11 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 11--13 []\T1/pcr/m/n/10 AddIndividualPropertyAndHINT() Overfull \hbox (34.06111pt too wide) in paragraph at lines 11--13 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 13--15 []\T1/pcr/m/n/10 AddSeasonalForcing() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ul e Overfull \hbox (15.62103pt too wide) in paragraph at lines 13--15 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 15--17 []\T1/pcr/m/n/10 AgeStructureUNWPP() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (15.62103pt too wide) in paragraph at lines 15--17 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Overfull \hbox (7.30118pt too wide) in paragraph at lines 17--19 []\T1/pcr/m/n/10 AgesYears() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration .migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 19--20 []\T1/pcr/m/n/10 AIR \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.migrati on.Migration at- Overfull \hbox (37.49991pt too wide) in paragraph at lines 20--22 []\T1/pcr/m/n/10 append() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializatio n.dtkFileTools.DtkFile.Contents Overfull \hbox (32.4899pt too wide) in paragraph at lines 22--24 []\T1/pcr/m/n/10 append() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializatio n.dtkFileTools.DtkFile.Objects Underfull \hbox (badness 10000) in paragraph at lines 24--26 []\T1/pcr/m/n/10 application() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (7.95116pt too wide) in paragraph at lines 24--26 \T1/ptm/m/it/10 emod_api.config.dtk_post_process_adhocevents\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 26--28 []\T1/pcr/m/n/10 application() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (4.2412pt too wide) in paragraph at lines 26--28 \T1/ptm/m/it/10 emod_api.config.dtk_pre_process_adhocevents\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 28--30 []\T1/pcr/m/n/10 application() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 28--30 \T1/ptm/m/it/10 emod_api.config.dtk_pre_process_w5ml\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 30--32 []\T1/pcr/m/n/10 application() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 30--32 \T1/ptm/m/it/10 emod_api.schema.dtk_post_process_schema\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 32--34 []\T1/pcr/m/n/10 apply_to_defaults_or_nodes() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 i n mod-ule Underfull \hbox (badness 10000) in paragraph at lines 32--34 \T1/ptm/m/it/10 emod_api.demographics.demographics_utils\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 34--36 []\T1/pcr/m/n/10 arcsec_to_deg() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (17.1711pt too wide) in paragraph at lines 34--36 \T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/ptm/m/n/10 ), Overfull \hbox (62.83089pt too wide) in paragraph at lines 36--38 []\T1/pcr/m/n/10 as_dataframe() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channe lreports.channels.ChannelReport Overfull \hbox (41.61118pt too wide) in paragraph at lines 38--40 []\T1/pcr/m/n/10 as_dictionary() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.chann elreports.channels.Channel Overfull \hbox (37.71117pt too wide) in paragraph at lines 40--42 []\T1/pcr/m/n/10 as_dictionary() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.chann elreports.channels.Header Underfull \hbox (badness 10000) in paragraph at lines 44--46 []\T1/pcr/m/n/10 Author() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.mi gration.Migration Underfull \hbox (badness 10000) in paragraph at lines 53--55 []\T1/pcr/m/n/10 BaseInputFile \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 53--55 \T1/ptm/m/it/10 emod_api.demographics.BaseInputFile\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 55--56 []\T1/pcr/m/n/10 basicNode() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 56--58 []\T1/pcr/m/n/10 BroadcastEvent() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 58--60 []\T1/pcr/m/n/10 BroadcastEventToOtherNodes() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 i n mod-ule Overfull \hbox (23.59027pt too wide) in paragraph at lines 61--63 []\T1/pcr/m/n/10 byte_count() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializ ation.dtkFileTools.DtkFile Underfull \hbox (badness 10000) in paragraph at lines 66--68 []\T1/pcr/m/n/10 change_ser_pop() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 66--68 \T1/ptm/m/it/10 emod_api.serialization.CensusAndModPop\T1/ptm/m/n/10 ), Overfull \hbox (68.83089pt too wide) in paragraph at lines 69--71 []\T1/pcr/m/n/10 channel_names() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.chann elreports.channels.ChannelReport Underfull \hbox (badness 10000) in paragraph at lines 71--73 []\T1/pcr/m/n/10 ChannelReport \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Overfull \hbox (38.83089pt too wide) in paragraph at lines 73--75 []\T1/pcr/m/n/10 channels() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channelrep orts.channels.ChannelReport Overfull \hbox (29.59027pt too wide) in paragraph at lines 75--77 []\T1/pcr/m/n/10 chunk_count() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.seriali zation.dtkFileTools.DtkFile [41] Overfull \hbox (29.59027pt too wide) in paragraph at lines 77--79 []\T1/pcr/m/n/10 chunk_sizes() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.seriali zation.dtkFileTools.DtkFile Overfull \hbox (36.91025pt too wide) in paragraph at lines 81--83 []\T1/pcr/m/n/10 compress() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializat ion.dtkFileSupport.EllZeeFour Overfull \hbox (21.29066pt too wide) in paragraph at lines 83--85 []\T1/pcr/m/n/10 compress() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializat ion.dtkFileSupport.Snappy Overfull \hbox (50.91016pt too wide) in paragraph at lines 85--87 []\T1/pcr/m/n/10 compress() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializat ion.dtkFileSupport.Uncompressed Underfull \hbox (badness 10000) in paragraph at lines 87--89 []\T1/pcr/m/n/10 compress() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (23.59027pt too wide) in paragraph at lines 89--91 []\T1/pcr/m/n/10 compressed() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializ ation.dtkFileTools.DtkFile Overfull \hbox (29.59027pt too wide) in paragraph at lines 91--93 []\T1/pcr/m/n/10 compression() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.seriali zation.dtkFileTools.DtkFile Underfull \hbox (badness 10000) in paragraph at lines 93--95 []\T1/pcr/m/n/10 ConstantMortality() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (15.62103pt too wide) in paragraph at lines 93--95 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 95--97 []\T1/pcr/m/n/10 construct() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 95--97 \T1/ptm/m/it/10 emod_api.demographics.grid_construction\T1/ptm/m/n/10 ), Overfull \hbox (46.65079pt too wide) in paragraph at lines 97--99 \T1/ptm/m/it/10 emod_api.demographics.DemographicsInputDataParsers\T1/ptm/m/n/1 0 ), Overfull \hbox (12.84114pt too wide) in paragraph at lines 99--101 []\T1/pcr/m/n/10 creation_date() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.weath er.weather.Metadata Overfull \hbox (7.47115pt too wide) in paragraph at lines 101--103 []\T1/pcr/m/n/10 creation_date() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.weath er.weather.Weather Underfull \hbox (badness 10000) in paragraph at lines 106--108 []\T1/pcr/m/n/10 data() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channelreports .channels.Channel Underfull \hbox (badness 10000) in paragraph at lines 108--110 []\T1/pcr/m/n/10 data() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.spatialreports .spatial.SpatialNode Underfull \hbox (badness 10000) in paragraph at lines 114--116 []\T1/pcr/m/n/10 datavalue_count() Underfull \hbox (badness 10000) in paragraph at lines 114--116 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.weather.weather.Metadata prop- Underfull \hbox (badness 10000) in paragraph at lines 116--118 []\T1/pcr/m/n/10 datavalue_count() Underfull \hbox (badness 10000) in paragraph at lines 116--118 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.weather.weather.Weather prop- Overfull \hbox (20.22127pt too wide) in paragraph at lines 118--120 []\T1/pcr/m/n/10 DatavalueCount() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migr ation.migration.Layer Overfull \hbox (37.30118pt too wide) in paragraph at lines 120--122 []\T1/pcr/m/n/10 DatavalueCount() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migr ation.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 122--124 []\T1/pcr/m/n/10 date() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serialization. dtkFileTools.DtkFile Overfull \hbox (19.30118pt too wide) in paragraph at lines 124--126 []\T1/pcr/m/n/10 DateCreated() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migrati on.migration.Migration Overfull \hbox (10.77174pt too wide) in paragraph at lines 126--128 []\T1/pcr/m/n/10 default_density \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demog raphics.Node.Node Underfull \hbox (badness 10000) in paragraph at lines 128--130 []\T1/pcr/m/n/10 default_population Underfull \hbox (badness 10000) in paragraph at lines 128--130 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Node.Node at- Underfull \hbox (badness 7291) in paragraph at lines 130--132 []\T1/pcr/m/n/10 DefaultSusceptibilityDistribution() \T1/ptm/m/n/10 (\T1/ptm/m/ it/10 in Overfull \hbox (46.96086pt too wide) in paragraph at lines 130--132 \T1/ptm/m/it/10 mod-ule emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/ 10 ), Underfull \hbox (badness 10000) in paragraph at lines 132--134 []\T1/pcr/m/n/10 DelayedIntervention() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 134--136 []\T1/pcr/m/n/10 Demographics \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 134--136 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 136--138 []\T1/pcr/m/n/10 DemographicsGenerator \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Overfull \hbox (17.1711pt too wide) in paragraph at lines 136--138 \T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 138--140 []\T1/pcr/m/n/10 DemographicsType \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Overfull \hbox (17.1711pt too wide) in paragraph at lines 138--140 \T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 140--142 []\T1/pcr/m/n/10 do_mapping_from_events() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule Overfull \hbox (4.2412pt too wide) in paragraph at lines 140--142 \T1/ptm/m/it/10 emod_api.config.dtk_pre_process_adhocevents\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 143--145 []\T1/pcr/m/n/10 dtk_to_schema() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (56.83089pt too wide) in paragraph at lines 145--147 []\T1/pcr/m/n/10 dtk_version() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channel reports.channels.ChannelReport Overfull \hbox (25.71117pt too wide) in paragraph at lines 147--149 []\T1/pcr/m/n/10 dtk_version() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channel reports.channels.Header Underfull \hbox (badness 10000) in paragraph at lines 150--152 []\T1/pcr/m/n/10 DtkFile.Contents \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 152--154 []\T1/pcr/m/n/10 DtkFile.Objects \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 154--156 []\T1/pcr/m/n/10 DtkFileV1 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 156--158 []\T1/pcr/m/n/10 DtkFileV2 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 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[]\T1/pcr/m/n/10 EllZeeFour \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Overfull \hbox (64.1225pt too wide) in paragraph at lines 187--188 []\T1/pcr/m/n/10 emod_api.config.default_from_schema_no_validation Overfull \hbox (34.1225pt too wide) in paragraph at lines 189--190 []\T1/pcr/m/n/10 emod_api.config.dtk_post_process_adhocevents Overfull \hbox (28.1225pt too wide) in paragraph at lines 191--192 []\T1/pcr/m/n/10 emod_api.config.dtk_pre_process_adhocevents Overfull \hbox (10.1225pt too wide) in paragraph at lines 209--210 []\T1/pcr/m/n/10 emod_api.demographics.demographics_utils Overfull \hbox (28.1225pt too wide) in paragraph at lines 211--212 []\T1/pcr/m/n/10 emod_api.demographics.DemographicsGenerator Overfull \hbox (70.1225pt too wide) in paragraph at lines 213--214 []\T1/pcr/m/n/10 emod_api.demographics.DemographicsInputDataParsers Overfull \hbox (28.1225pt too wide) in paragraph at lines 215--216 []\T1/pcr/m/n/10 emod_api.demographics.DemographicsTemplates Overfull \hbox (4.1225pt too wide) in paragraph at lines 217--218 []\T1/pcr/m/n/10 emod_api.demographics.grid_construction Overfull \hbox (4.1225pt too wide) in paragraph at lines 239--240 []\T1/pcr/m/n/10 emod_api.schema.dtk_post_process_schema Overfull \hbox (28.1225pt too wide) in paragraph at lines 255--256 []\T1/pcr/m/n/10 emod_api.serialization.SerializedPopulation Overfull \hbox (16.1225pt too wide) in paragraph at lines 267--269 []\T1/pcr/m/n/10 EquilibriumAgeDistFromBirthAndMortRates() Overfull \hbox (59.97073pt too wide) in paragraph at lines 267--269 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule emod_api.demographics.DemographicsTe mplates\T1/ptm/m/n/10 ), Overfull \hbox (15.62103pt too wide) in paragraph at lines 269--271 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 271--273 []\T1/pcr/m/n/10 examine_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule [43] Underfull \hbox (badness 10000) in paragraph at lines 281--283 []\T1/pcr/m/n/10 fill_nodes_legacy() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (46.65079pt too wide) in paragraph at lines 281--283 \T1/ptm/m/it/10 emod_api.demographics.DemographicsInputDataParsers\T1/ptm/m/n/1 0 ), Overfull \hbox (4.62106pt too wide) in paragraph at lines 283--285 []\T1/pcr/m/n/10 finalize() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.schema_to_ class.ReadOnlyDict Overfull \hbox (36.30013pt too wide) in paragraph at lines 285--287 []\T1/pcr/m/n/10 find() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule emod_api.ser ialization.SerializedPopulation\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 287--289 []\T1/pcr/m/n/10 flattenConfig() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (81.59949pt too wide) in paragraph at lines 289--291 []\T1/pcr/m/n/10 flush() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serialization .SerializedPopulation.SerializedPopulation Underfull \hbox (badness 10000) in paragraph at lines 293--295 []\T1/pcr/m/n/10 from_csv() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 293--295 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 295--297 []\T1/pcr/m/n/10 from_data() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demograph ics.Node.Node Underfull \hbox (badness 10000) in paragraph at lines 297--299 []\T1/pcr/m/n/10 from_dataframe() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (17.1711pt too wide) in paragraph at lines 297--299 \T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 301--303 []\T1/pcr/m/n/10 from_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.weather.w eather.Metadata Underfull \hbox (badness 10000) in paragraph at lines 303--305 []\T1/pcr/m/n/10 from_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 303--305 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 305--307 []\T1/pcr/m/n/10 from_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (17.1711pt too wide) in paragraph at lines 305--307 \T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 307--308 []\T1/pcr/m/n/10 from_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 308--310 []\T1/pcr/m/n/10 from_params() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 308--310 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 310--311 []\T1/pcr/m/n/10 from_params() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 311--313 []\T1/pcr/m/n/10 from_pop_csv() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 311--313 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 313--315 []\T1/pcr/m/n/10 from_template_node() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 313--315 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 315--317 []\T1/pcr/m/n/10 FullRisk() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (15.62103pt too wide) in paragraph at lines 315--317 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Overfull \hbox (37.30118pt too wide) in paragraph at lines 320--322 []\T1/pcr/m/n/10 GenderDataType() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migr ation.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 322--324 []\T1/pcr/m/n/10 generate_demographics() Overfull \hbox (115.97037pt too wide) in paragraph at lines 322--324 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator.Dem ographicsGenerator Overfull \hbox (80.97084pt too wide) in paragraph at lines 324--326 []\T1/pcr/m/n/10 generate_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demog raphics.BaseInputFile.BaseInputFile Overfull \hbox (85.96114pt too wide) in paragraph at lines 326--328 []\T1/pcr/m/n/10 generate_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demog raphics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 328--330 []\T1/pcr/m/n/10 generate_headers() Overfull \hbox (29.07082pt too wide) in paragraph at lines 328--330 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.BaseInputFile.BaseInputFi le Underfull \hbox (badness 10000) in paragraph at lines 330--332 []\T1/pcr/m/n/10 generate_metadata() Overfull \hbox (115.97037pt too wide) in paragraph at lines 330--332 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator.Dem ographicsGenerator Overfull \hbox (173.87039pt too wide) in paragraph at lines 332--334 []\T1/pcr/m/n/10 generate_nodes() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demo graphics.DemographicsGenerator.DemographicsGenerator Underfull \hbox (badness 10000) in paragraph at lines 335--337 []\T1/pcr/m/n/10 get_bbox() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 335--337 \T1/ptm/m/it/10 emod_api.demographics.grid_construction\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 337--339 []\T1/pcr/m/n/10 get_class_with_defaults() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in m od-ule Overfull \hbox (62.64088pt too wide) in paragraph at lines 339--341 \T1/ptm/m/it/10 mod-ule emod_api.config.default_from_schema_no_validation\T1/pt m/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 344--346 []\T1/pcr/m/n/10 get_grid_cell_id() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 344--346 \T1/ptm/m/it/10 emod_api.demographics.grid_construction\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 346--348 []\T1/pcr/m/n/10 get_next_individual_suid() Overfull \hbox (77.69946pt too wide) in paragraph at lines 346--348 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serialization.SerializedPopulation.Ser ializedPopulation Underfull \hbox (badness 10000) in paragraph at lines 348--350 []\T1/pcr/m/n/10 get_next_infection_suid() Overfull \hbox (77.69946pt too wide) in paragraph at lines 348--350 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serialization.SerializedPopulation.Ser ializedPopulation Overfull \hbox (55.96114pt too wide) in paragraph at lines 350--352 []\T1/pcr/m/n/10 get_node() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographi cs.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 352--354 []\T1/pcr/m/n/10 get_node_ids_from_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 352--354 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 354--356 []\T1/pcr/m/n/10 get_node_offsets() Underfull \hbox (badness 10000) in paragraph at lines 354--356 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 356--358 []\T1/pcr/m/n/10 get_node_pops_from_params() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 358--360 []\T1/pcr/m/n/10 get_parameters() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 358--360 \T1/ptm/m/it/10 emod_api.serialization.SerializedPopulation\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 361--362 []\T1/pcr/m/n/10 get_trigger_list() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule [44] Underfull \hbox (badness 10000) in paragraph at lines 362--364 []\T1/pcr/m/n/10 get_waning_from_params() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 364--366 []\T1/pcr/m/n/10 get_xpix_ypix() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (26.83089pt too wide) in paragraph at lines 370--372 []\T1/pcr/m/n/10 header() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channelrepor ts.channels.ChannelReport Underfull \hbox (badness 10000) in paragraph at lines 381--383 []\T1/pcr/m/n/10 id() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.spatialreports.s patial.SpatialNode Underfull \hbox (badness 7308) in paragraph at lines 383--384 []\T1/pcr/m/n/10 id() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.weather.weather. WeatherNode prop- Overfull \hbox (6.84114pt too wide) in paragraph at lines 384--386 []\T1/pcr/m/n/10 id_reference() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.weathe r.weather.Metadata Overfull \hbox (1.47115pt too wide) in paragraph at lines 386--388 []\T1/pcr/m/n/10 id_reference() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.weathe r.weather.Weather Underfull \hbox (badness 10000) in paragraph at lines 388--390 []\T1/pcr/m/n/10 IDREF_GRUMP1DEGREE Underfull \hbox (badness 10000) in paragraph at lines 388--390 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 390--392 []\T1/pcr/m/n/10 IDREF_GRUMP2PT5ARCMIN Underfull \hbox (badness 10000) in paragraph at lines 390--392 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 392--394 []\T1/pcr/m/n/10 IDREF_GRUMP30ARCSEC Underfull \hbox (badness 10000) in paragraph at lines 392--394 \T1/ptm/m/n/10 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emod_api.config.default_from_schema_no_validation\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 425--427 []\T1/pcr/m/n/10 LOCAL \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.migra tion.Migration Underfull \hbox (badness 10000) in paragraph at lines 427--429 []\T1/pcr/m/n/10 lon_lat_2_point() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 427--429 \T1/ptm/m/it/10 emod_api.demographics.grid_construction\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 432--434 []\T1/pcr/m/n/10 make_config_from_poi() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod- ule Underfull \hbox (badness 10000) in paragraph at lines 432--434 \T1/ptm/m/it/10 emod_api.config.from_poi_and_binary\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 434--436 []\T1/pcr/m/n/10 make_config_from_poi_and_config_dict() Overfull \hbox (16.3614pt too wide) in paragraph at lines 434--436 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 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paragraph at lines 446--448 []\T1/pcr/m/n/10 MigrationType() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migra tion.migration.Migration [45] Overfull \hbox (2.6225pt too wide) in paragraph at lines 454--455 []| \T1/pcr/m/n/10 emod_api.config.default_from_schema\T1/ptm/m/n/10 , Overfull \hbox (86.6225pt too wide) in paragraph at lines 455--456 []| \T1/pcr/m/n/10 emod_api.config.default_from_schema_no_validation\T1/ptm/m/n /10 , Overfull \hbox (56.6225pt too wide) in paragraph at lines 456--457 []| \T1/pcr/m/n/10 emod_api.config.dtk_post_process_adhocevents\T1/ptm/m/n/10 , Overfull \hbox (50.6225pt too wide) in paragraph at lines 457--458 []| \T1/pcr/m/n/10 emod_api.config.dtk_pre_process_adhocevents\T1/ptm/m/n/10 , Overfull \hbox (8.6225pt too wide) in paragraph at lines 458--459 []| \T1/pcr/m/n/10 emod_api.config.dtk_pre_process_w5ml\T1/ptm/m/n/10 , Overfull \hbox (2.6225pt too wide) in paragraph at lines 460--461 []| \T1/pcr/m/n/10 emod_api.config.from_poi_and_binary\T1/ptm/m/n/10 , 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paragraph at lines 683--685 []\T1/pcr/m/n/10 SimpleSusceptibilityDistribution() \T1/ptm/m/n/10 (\T1/ptm/m/i t/10 in Overfull \hbox (46.96086pt too wide) in paragraph at lines 683--685 \T1/ptm/m/it/10 mod-ule emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/ 10 ), Overfull \hbox (34.70026pt too wide) in paragraph at lines 685--687 []\T1/pcr/m/n/10 simulation() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializ ation.dtkFileTools.DtkFileV1 Overfull \hbox (34.70026pt too wide) in paragraph at lines 687--689 []\T1/pcr/m/n/10 simulation() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializ ation.dtkFileTools.DtkFileV2 Overfull \hbox (34.70026pt too wide) in paragraph at lines 689--691 []\T1/pcr/m/n/10 simulation() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializ ation.dtkFileTools.DtkFileV3 Overfull \hbox (2.94016pt too wide) in paragraph at lines 691--692 []\T1/pcr/m/n/10 Snappy \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in emod_api.seria lization.dtkFileSupport\T1/ptm/m/n/10 ), Underfull 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[]\T1/pcr/m/n/10 STATIC \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.D emographicsGenerator.DemographicsType Overfull \hbox (44.83089pt too wide) in paragraph at lines 705--707 []\T1/pcr/m/n/10 step_size() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channelre ports.channels.ChannelReport Overfull \hbox (13.71117pt too wide) in paragraph at lines 707--709 []\T1/pcr/m/n/10 step_size() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channelre ports.channels.Header Underfull \hbox (badness 10000) in paragraph at lines 709--711 []\T1/pcr/m/n/10 StepFunctionSusceptibility() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 i n mod-ule Overfull \hbox (15.62103pt too wide) in paragraph at lines 709--711 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), [48] Overfull \hbox (50.83089pt too wide) in paragraph at lines 716--718 []\T1/pcr/m/n/10 time_stamp() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channelr eports.channels.ChannelReport Overfull \hbox (19.71117pt too wide) in paragraph at 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Overfull \hbox (5.59027pt too wide) in paragraph at lines 761--763 []\T1/pcr/m/n/10 version() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializati on.dtkFileTools.DtkFile Overfull \hbox (81.59949pt too wide) in paragraph at lines 768--770 []\T1/pcr/m/n/10 write() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serialization .SerializedPopulation.SerializedPopulation Underfull \hbox (badness 10000) in paragraph at lines 770--771 []\T1/pcr/m/n/10 write() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 771--773 []\T1/pcr/m/n/10 write_config_from_default_and_params() Overfull \hbox (75.65076pt too wide) in paragraph at lines 771--773 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule emod_api.config.default_from_schema_ no_validation\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 773--775 []\T1/pcr/m/n/10 write_default_from_schema() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 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(rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc}< /usr/share/texlive/texmf-dist/fonts/type1/urw/courier/ucrr8a.pfb>< /usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmri8a.pfb> Output written on institute-for-disease-modeling-emod-api.pdf (53 pages, 262118 bytes). Transcript written on institute-for-disease-modeling-emod-api.log. Latexmk: Index file 'institute-for-disease-modeling-emod-api.idx' was written Latexmk: References changed. Latexmk: Log file says output to 'institute-for-disease-modeling-emod-api.pdf' Latexmk: Log file says output to 'institute-for-disease-modeling-emod-api.pdf' Rule 'pdflatex': File changes, etc: Changed files, or newly in use since previous run(s): 'institute-for-disease-modeling-emod-api.aux' 'institute-for-disease-modeling-emod-api.out' 'institute-for-disease-modeling-emod-api.toc' ------------ Run number 3 of rule 'pdflatex' ------------ ------------ Running 'pdflatex -interaction=nonstopmode -recorder --jobname="institute-for-disease-modeling-emod-api" "emod-api-docs.tex"' ------------ Latexmk: applying rule 'pdflatex'... This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./emod-api-docs.tex LaTeX2e <2017-04-15> Babel <3.18> and hyphenation patterns for 84 language(s) loaded. 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\T1/ptm/m/it/10 Op-tional[List[[][]str[][]]] Underfull \hbox (badness 10000) in paragraph at lines 975--975 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Overfull \hbox (0.89452pt too wide) in paragraph at lines 975--975 \T1/ptm/m/it/10 nodeid_column_name: Underfull \hbox (badness 10000) in paragraph at lines 975--975 \T1/ptm/m/it/10 Op-tional[[][]str[][]] Underfull \hbox (badness 10000) in paragraph at lines 975--975 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lat-i- Underfull \hbox (badness 10000) in paragraph at lines 975--975 \T1/ptm/m/it/10 tude_column_name: Underfull \hbox (badness 10000) in paragraph at lines 975--975 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 lat\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lon-gi- Underfull \hbox (badness 10000) in paragraph at lines 975--975 \T1/ptm/m/it/10 tude_column_name: Underfull \hbox (badness 10000) in paragraph at lines 975--975 \T1/ptm/m/it/10 tion_column_name: [10] Overfull \hbox (54.94496pt too wide) in paragraph at lines 990--991 []\T1/pcr/b/n/10 apply. If not specified, we use the DefaultWorldBankEquilibriu mConcern [11] Underfull \hbox (badness 10000) in paragraph at lines 1038--1038 []\T1/ptm/m/it/10 population_input_file: Underfull \hbox (badness 10000) in paragraph at lines 1038--1038 [][]\T1/ptm/m/it/10 str[][]\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-mo-graph- Underfull \hbox (badness 7851) in paragraph at lines 1038--1038 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 con-cerns: Op- Overfull \hbox (349.54115pt too wide) in paragraph at lines 1038--1038 \T1/ptm/m/it/10 tional[Union[emod_api.dtk_tools.demographics.DemographicsGenera torConcern.DemographicsGeneratorConcern, Overfull \hbox (321.49101pt too wide) in paragraph at lines 1038--1038 \T1/ptm/m/it/10 List[emod_api.dtk_tools.demographics.DemographicsGeneratorConce rn.DemographicsGeneratorConcern]]] Underfull \hbox (badness 10000) in paragraph at lines 1038--1038 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1038--1038 \T1/ptm/m/it/10 res_in_arcsec=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 custom\TS1/ptm/ m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (0.83415pt too wide) in paragraph at lines 1038--1038 \T1/ptm/m/it/10 node_id_from_lat_long=True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1038--1038 \T1/ptm/m/it/10 de-fault_population: Underfull \hbox (badness 10000) in paragraph at lines 1038--1038 [][]\T1/ptm/m/it/10 int[][] = 1000\T1/ptm/m/n/10 , Overfull \hbox (49.21327pt too wide) in paragraph at lines 1038--1038 \T1/ptm/m/it/10 load_other_columns_as_attributes=False\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1038--1038 \T1/ptm/m/it/10 in-clude_columns: Op- Underfull \hbox (badness 10000) in paragraph at lines 1038--1038 \T1/ptm/m/it/10 tional[List[[][]str[][]]] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1038--1038 \T1/ptm/m/it/10 ex-clude_columns: Op- Underfull \hbox (badness 10000) in paragraph at lines 1038--1038 \T1/ptm/m/it/10 tional[List[[][]str[][]]] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1038--1038 \T1/ptm/m/it/10 nodeid_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1038--1038 \T1/ptm/m/it/10 Op-tional[[][]str[][]] = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1038--1038 \T1/ptm/m/it/10 lat-i-tude_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1038--1038 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 lat\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lon-gi- Underfull \hbox (badness 10000) in paragraph at lines 1038--1038 \T1/ptm/m/it/10 tude_column_name: Underfull \hbox (badness 10000) in paragraph at lines 1038--1038 [][]\T1/ptm/m/it/10 str[][] = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 lon\TS1/ptm/m/i t/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pop-u-la- Underfull \hbox (badness 6236) in paragraph at lines 1038--1038 \T1/ptm/m/it/10 tion_column_name: [][]str[][] = Overfull \hbox (54.94496pt too wide) in paragraph at lines 1053--1054 []\T1/pcr/b/n/10 apply. If not specified, we use the DefaultWorldBankEquilibriu mConcern [12] Overfull \hbox (6.3048pt too wide) in paragraph at lines 1109--1109 []\T1/ptm/m/it/10 lat\T1/ptm/m/n/10 , Overfull \hbox (13.5249pt too wide) in paragraph at lines 1109--1109 \T1/ptm/m/it/10 long\T1/ptm/m/n/10 , Overfull \hbox (115.34473pt too wide) in paragraph at lines 1109--1109 \T1/ptm/m/it/10 res=0.008333333333333333\T1/pcr/m/n/10 ) Overfull \hbox (37.09444pt too wide) in paragraph at lines 1115--1115 []\T1/ptm/m/it/10 nodelist\T1/pcr/m/n/10 ) Overfull \hbox (11.74474pt too wide) in paragraph at lines 1121--1121 []\T1/ptm/m/it/10 node_info\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1121--1121 \T1/ptm/m/it/10 De- Underfull \hbox (badness 10000) in paragraph at lines 1121--1121 \T1/ptm/m/it/10 moDf\T1/ptm/m/n/10 , Overfull \hbox (91.34473pt too wide) in paragraph at lines 1121--1121 \T1/ptm/m/it/10 res=0.008333333333333333\T1/pcr/m/n/10 ) Overfull \hbox (71.74474pt too wide) in paragraph at lines 1127--1127 []\T1/ptm/m/it/10 node_info\T1/ptm/m/n/10 , Overfull \hbox (41.2549pt too wide) in paragraph at lines 1127--1127 \T1/ptm/m/it/10 ex- Overfull \hbox (118.90427pt too wide) in paragraph at lines 1127--1127 \T1/ptm/m/it/10 tra_data_columns=[]\T1/ptm/m/n/10 , Overfull \hbox (151.34473pt too wide) in paragraph at lines 1127--1127 \T1/ptm/m/it/10 res=0.008333333333333333\T1/pcr/m/n/10 ) [13] Underfull \hbox (badness 10000) in paragraph at lines 1188--1188 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , \T1/ptm/m/it/10 min=0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1200--1202 []\T1/ptm/m/n/10 json ob-ject aka python dict that can be di-rectly passed to D e-mo-graph- Overfull \hbox (22.30493pt too wide) in paragraph at lines 1244--1244 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Overfull \hbox (7.6847pt too wide) in paragraph at lines 1244--1244 \T1/ptm/m/it/10 set- Overfull \hbox (34.0548pt too wide) in paragraph at lines 1244--1244 \T1/ptm/m/it/10 ting=1.0\T1/pcr/m/n/10 ) Overfull \hbox (10.30493pt too wide) in paragraph at lines 1250--1250 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1250--1250 \T1/ptm/m/it/10 pro- Overfull \hbox (58.54413pt too wide) in paragraph at lines 1250--1250 \T1/ptm/m/it/10 tected_setting=0.0\T1/ptm/m/n/10 , Overfull \hbox (9.20457pt too wide) in paragraph at lines 1250--1250 \T1/ptm/m/it/10 thresh- Overfull \hbox (53.51486pt too wide) in paragraph at lines 1250--1250 \T1/ptm/m/it/10 old_age=1825.0\T1/pcr/m/n/10 ) Overfull \hbox (46.30493pt too wide) in paragraph at lines 1256--1256 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Overfull \hbox (42.23488pt too wide) in paragraph at lines 1256--1256 \T1/ptm/m/it/10 mean- Overfull \hbox (44.91478pt too wide) in paragraph at lines 1256--1256 \T1/ptm/m/it/10 AgeAt- Overfull \hbox (28.90492pt too wide) in paragraph at lines 1256--1256 \T1/ptm/m/it/10 In- Overfull \hbox (32.23474pt too wide) in paragraph at lines 1256--1256 \T1/ptm/m/it/10 fec- Overfull \hbox (58.0548pt too wide) in paragraph at lines 1256--1256 \T1/ptm/m/it/10 tion=2.5\T1/pcr/m/n/10 ) Overfull \hbox (55.80493pt too wide) in paragraph at lines 1262--1262 []\T1/ptm/m/it/10 demog\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1268--1268 []\T1/ptm/m/it/10 AgeBins\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Mor- Overfull \hbox (88.30493pt too wide) in paragraph at lines 1300--1300 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Overfull \hbox (87.57472pt too wide) in paragraph at lines 1300--1300 \T1/ptm/m/it/10 Crude- Overfull \hbox (124.88449pt too wide) in paragraph at lines 1300--1300 \T1/ptm/m/it/10 BirthRate=0.04\T1/ptm/m/n/10 , Overfull \hbox (87.57472pt too wide) in paragraph at lines 1300--1300 \T1/ptm/m/it/10 Crude- Overfull \hbox (79.59486pt too wide) in paragraph at lines 1300--1300 \T1/ptm/m/it/10 Mor- Overfull \hbox (110.60472pt too wide) in paragraph at lines 1300--1300 \T1/ptm/m/it/10 tRate=0.02\T1/pcr/m/n/10 ) [14] Underfull \hbox (badness 10000) in paragraph at lines 1306--1306 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1306--1306 \T1/ptm/m/it/10 start=100\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1306--1306 \T1/ptm/m/it/10 end=330\T1/ptm/m/n/10 , \T1/ptm/m/it/10 fac- Underfull \hbox (badness 10000) in paragraph at lines 1309--1312 []\T1/ptm/m/n/10 Requires con-fig en-ables in-fec-tiv-ity scal-ing: e.g.: `En-a ble_Infectivity_Scaling': 1, `En- Overfull \hbox (22.9045pt too wide) in paragraph at lines 1393--1393 []\T1/ptm/m/it/10 nodeid\T1/ptm/m/n/10 , \T1/ptm/m/it/10 res_in_deg=0.041666666 666666664\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1399--1399 []\T1/ptm/m/it/10 lat\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lon\T1/ptm/m/n/10 , Overfull \hbox (9.16464pt too wide) in paragraph at lines 1399--1399 \T1/ptm/m/it/10 res_in_deg=0.041666666666666664\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1405--1405 []\T1/ptm/m/it/10 lat\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lon\T1/ptm/m/n/10 , [15] Underfull \hbox (badness 10000) in paragraph at lines 1434--1435 []\T1/pcr/b/n/10 distribution \T1/ptm/m/n/10 ^^U The se-lected dis-tri-bu-tion (need to come from Underfull \hbox (badness 10000) in paragraph at lines 1454--1454 []\T1/ptm/m/it/10 filename\T1/ptm/m/n/10 , \T1/ptm/m/it/10 dis-tri-bu-tion\T1/p tm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1455--1456 \T1/ptm/m/n/10 Set the \T1/pcr/m/n/10 ImmunityDistributionFlag\T1/ptm/m/n/10 , \T1/pcr/m/n/10 ImmunityDistribution1 \T1/ptm/m/n/10 and Underfull \hbox (badness 10000) in paragraph at lines 1482--1482 []\T1/ptm/m/it/10 demog\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1482--1482 \T1/ptm/m/it/10 fn\T1/ptm/m/n/10 , [16] Underfull \hbox (badness 10000) in paragraph at lines 1552--1552 []\T1/ptm/m/it/10 cb\T1/ptm/m/n/10 , Overfull \hbox (28.70406pt too wide) in paragraph at lines 1552--1552 \T1/ptm/m/it/10 use_existing=False\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1578--1578 []\T1/ptm/m/it/10 cb\T1/ptm/m/n/10 , Overfull \hbox (34.70406pt too wide) in paragraph at lines 1578--1578 \T1/ptm/m/it/10 use_existing=False\T1/pcr/m/n/10 ) [17] Underfull \hbox (badness 10000) in paragraph at lines 1650--1650 []\T1/ptm/m/it/10 point\T1/ptm/m/n/10 , Overfull \hbox (37.41425pt too wide) in paragraph at lines 1650--1650 \T1/ptm/m/it/10 grid_id_2_cell_id\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1691--1691 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Event_Trigger\T1/ptm/m/n /10 , Overfull \hbox (73.22345pt too wide) in paragraph at lines 1691--1691 \T1/ptm/m/it/10 Node_Selection_Type=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 DISTANCE_ ONLY\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (57.50374pt too wide) in paragraph at lines 1691--1691 \T1/ptm/m/it/10 Max_Distance_To_Other_Nodes_Km=- Underfull \hbox (badness 10000) in paragraph at lines 1726--1726 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 In-ter-ven- [18] Underfull \hbox (badness 10000) in paragraph at lines 1769--1770 []\T1/pcr/b/n/10 but without the distribution, which is inferred. E.g., Underfull \hbox (badness 10000) in paragraph at lines 1790--1790 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Event_Or_Config=\TS1/ptm /m/it/10 '\T1/ptm/m/it/10 Event\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/ 10 Con-fig=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1790--1790 \T1/ptm/m/it/10 Event=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 NoTrigger\TS1/ptm/m/it/ 10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Ten-dency=1.0\T1/ptm/m/n/10 , \T1/ptm/m/it /10 Sin-gle_Use=True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1834--1834 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Trig-gers\T1/ptm/m/n/10 , \T1/ptm/m/it/10 In-ter-ven-tions\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Prop- Underfull \hbox (badness 6775) in paragraph at lines 1834--1834 \T1/ptm/m/it/10 erty_Restrictions=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 De-mo-gr aphic_Coverage=1.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1834--1834 \T1/ptm/m/it/10 Tar-get_Demographic=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Everyone\ TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar-get_Age_Min=0\T1/ptm/m/n/ 10 , Underfull \hbox (badness 10000) in paragraph at lines 1834--1834 \T1/ptm/m/it/10 Tar-get_Age_Max=45625\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar-get_G ender=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 All\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1834--1834 \T1/ptm/m/it/10 Tar-get_Residents_Only=1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Durati on=- 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Black- Underfull \hbox (badness 10000) in paragraph at lines 1834--1834 \T1/ptm/m/it/10 out_Event_Trigger=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Blackout_Ev ent_Trigger\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Black- Underfull \hbox (badness 10000) in paragraph at lines 1834--1834 \T1/ptm/m/it/10 out_Period=0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Black-out_On_First _Occurrence=0\T1/ptm/m/n/10 , [19] Underfull \hbox (badness 10000) in paragraph at lines 1899--1899 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar-get_Property_Key\T1/ ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1899--1899 \T1/ptm/m/it/10 Tar-get_Property_Value\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1899--1899 \T1/ptm/m/it/10 New_Property_Value\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1899--1899 \T1/ptm/m/it/10 Daily_Probability=1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Max-i- Underfull \hbox (badness 10000) in paragraph at lines 1899--1899 \T1/ptm/m/it/10 In-ter-ven-tion_Name=\TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1899--1899 \T1/ptm/m/it/10 Event_Trigger_Distributed=\TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1919--1919 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Start_Day\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Node- Underfull \hbox (badness 10000) in paragraph at lines 1919--1919 \T1/ptm/m/it/10 set_Config\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Num- Underfull \hbox (badness 10000) in paragraph at lines 1919--1919 \T1/ptm/m/it/10 ber_Repetitions=1\T1/ptm/m/n/10 , Overfull \hbox (11.65335pt too wide) in paragraph at lines 1919--1919 \T1/ptm/m/it/10 Timesteps_Between_Repetitions=- Underfull \hbox (badness 10000) in paragraph at lines 1919--1919 \T1/ptm/m/it/10 1\T1/ptm/m/n/10 , Overfull \hbox (53.26375pt too wide) in paragraph at lines 1919--1919 \T1/ptm/m/it/10 Event_Name=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Scheduled_Campaign _Event\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Overfull \hbox (17.59343pt too wide) in paragraph at lines 1919--1919 \T1/ptm/m/it/10 Node_Property_Restrictions=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1919--1919 \T1/ptm/m/it/10 Prop- Underfull \hbox (badness 10000) in paragraph at lines 1919--1919 \T1/ptm/m/it/10 erty_Restrictions=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar- Underfull \hbox (badness 10000) in paragraph at lines 1919--1919 \T1/ptm/m/it/10 get_Demographic=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Everyone\TS1/ ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1919--1919 \T1/ptm/m/it/10 De-mo-graphic_Coverage=1.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1919--1919 \T1/ptm/m/it/10 Tar-get_Age_Min=0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar- Underfull \hbox (badness 10000) in paragraph at lines 1919--1919 \T1/ptm/m/it/10 get_Age_Max=45625\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar- Underfull \hbox (badness 10000) in paragraph at lines 1919--1919 \T1/ptm/m/it/10 get_Gender=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 All\TS1/ptm/m/it/1 0 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 In-ter-ven- [20] Underfull \hbox (badness 10000) in paragraph at lines 1985--1985 \T1/ptm/m/it/10 Node-set_Config\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Trig- Underfull \hbox (badness 10000) in paragraph at lines 1985--1985 \T1/ptm/m/it/10 gers\T1/ptm/m/n/10 , \T1/ptm/m/it/10 In-ter-ven-tion_List\T1/pt m/m/n/10 , Overfull \hbox (17.59343pt too wide) in paragraph at lines 1985--1985 \T1/ptm/m/it/10 Node_Property_Restrictions=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1985--1985 \T1/ptm/m/it/10 Prop-erty_Restrictions=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1985--1985 \T1/ptm/m/it/10 Num-ber_Repetitions=1\T1/ptm/m/n/10 , Overfull \hbox (11.65335pt too wide) in paragraph at lines 1985--1985 \T1/ptm/m/it/10 Timesteps_Between_Repetitions=- Underfull \hbox (badness 10000) in paragraph at lines 1985--1985 \T1/ptm/m/it/10 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 De-mo- Underfull \hbox (badness 10000) in paragraph at lines 1985--1985 \T1/ptm/m/it/10 graphic_Coverage=1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar- Underfull \hbox (badness 10000) in paragraph at lines 1985--1985 \T1/ptm/m/it/10 get_Demographic=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Everyone\TS1/ ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1985--1985 \T1/ptm/m/it/10 Tar-get_Age_Min=0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar- Underfull \hbox (badness 10000) in paragraph at lines 1985--1985 \T1/ptm/m/it/10 get_Age_Max=45625\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1985--1985 \T1/ptm/m/it/10 Tar-get_Gender=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 All\TS1/ptm/m/ it/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Tar- Underfull \hbox (badness 10000) in paragraph at lines 1985--1985 \T1/ptm/m/it/10 get_Residents_Only=1\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1985--1985 \T1/ptm/m/it/10 Duration=- 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Black- Overfull \hbox (59.96321pt too wide) in paragraph at lines 1985--1985 \T1/ptm/m/it/10 out_Event_Trigger=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Blackout_Ev ent_Trigger\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1985--1985 \T1/ptm/m/it/10 Black-out_Period=0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Black- Underfull \hbox (badness 10000) in paragraph at lines 1985--1985 \T1/ptm/m/it/10 out_On_First_Occurrence=0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1985--1985 \T1/ptm/m/it/10 Dis-qual-i-fy- Underfull \hbox (badness 10000) in paragraph at lines 1985--1985 \T1/ptm/m/it/10 ing_Properties=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 De- [21] [22] Underfull \hbox (badness 10000) in paragraph at lines 2069--2069 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Base_Sensitivity=1\T1/pt m/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2069--2069 \T1/ptm/m/it/10 Base_Specificity=1\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2069--2069 \T1/ptm/m/it/10 Days_To_Diagnosis=0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2069--2069 \T1/ptm/m/it/10 Treat-ment_Fraction=1\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2116--2116 []\T1/ptm/m/it/10 timestep\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cam-paign_hook\T1/pt m/m/n/10 , \T1/ptm/m/it/10 cov-er- [23] Underfull \hbox (badness 10000) in paragraph at lines 2159--2159 \T1/ptm/m/it/10 ef-fi-cacy=1.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2159--2159 \T1/ptm/m/it/10 sv_name=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Vaccine\TS1/ptm/m/it/ 10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2159--2159 \T1/ptm/m/it/10 wan-ing_duration=100\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2180--2180 []\T1/ptm/m/it/10 timestep\T1/ptm/m/n/10 , \T1/ptm/m/it/10 file- Underfull \hbox (badness 10000) in paragraph at lines 2197--2197 []\T1/ptm/m/it/10 schema_path\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ini-tial=1.0\T1/p tm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2197--2197 \T1/ptm/m/it/10 box_duration=365\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de- [24] Underfull \hbox (badness 5548) in paragraph at lines 2272--2275 []\T1/ptm/m/n/10 EMOD/DTK for-mat mi-gra-tion files (and as-so-ci-ated meta-dat a files) can be writ-ten with mi-gra- [25] Underfull \hbox (badness 10000) in paragraph at lines 2538--2538 \T1/ptm/m/it/10 num_nodes=100\T1/ptm/m/n/10 , \T1/ptm/m/it/10 mig_factor=1.0\T1 /ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2538--2538 \T1/ptm/m/it/10 frac_rural=0.3\T1/ptm/m/n/10 , \T1/ptm/m/it/10 id_ref=\TS1/ptm/ m/it/10 '\T1/ptm/m/it/10 from_params\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm/ m/it/10 mi- [26] Overfull \hbox (2.15437pt too wide) in paragraph at lines 2549--2549 []\T1/ptm/m/it/10 demographics_file_path\T1/ptm/m/n/10 , Overfull \hbox (24.70302pt too wide) in paragraph at lines 2587--2587 []\T1/ptm/m/it/10 path_to_binary\T1/ptm/m/n/10 , \T1/ptm/m/it/10 path_to_write_ schema=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 schema.json\TS1/ptm/m/it/10 '\T1/pcr/m /n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 2608--2608 []\T1/ptm/m/it/10 input_serpop_path\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2608--2608 \T1/ptm/m/it/10 mod_fn=None\T1/ptm/m/n/10 , [27] Underfull \hbox (badness 10000) in paragraph at lines 2629--2629 []\T1/ptm/m/it/10 file: [28] Underfull \hbox (badness 10000) in paragraph at lines 2755--2755 []\T1/ptm/m/it/10 name: [][]str[][]\T1/ptm/m/n/10 , \T1/ptm/m/it/10 han-dle\T1/ ptm/m/n/10 , \T1/ptm/m/it/10 cur- Underfull \hbox (badness 10000) in paragraph at lines 2790--2790 []\T1/ptm/m/it/10 handle\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cur- [29] Underfull \hbox (badness 7944) in paragraph at lines 2911--2911 \T1/ptm/m/it/10 True, \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 date\TS1/ptm/m/it/10 '\ T1/ptm/m/it/10 : \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Thu Apr 08 Underfull \hbox (badness 5050) in paragraph at lines 2911--2911 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 tool\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 : \TS1/ ptm/m/it/10 '\T1/ptm/m/it/10 dtk-File-Tools.py\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 , \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 ver- [30] Underfull \hbox (badness 10000) in paragraph at lines 3027--3027 []\T1/ptm/m/it/10 header={\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 author\TS1/ptm/m/it /10 '\T1/ptm/m/it/10 : \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 un-known\TS1/ptm/m/it/ 10 '\T1/ptm/m/it/10 , Underfull \hbox (badness 6493) in paragraph at lines 3027--3027 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 byte-count\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 : 0, \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 chunkcount\TS1/ptm/m/it/10 '\T1/ptm/m/it/ 10 : Underfull \hbox (badness 10000) in paragraph at lines 3027--3027 \T1/ptm/m/it/10 0, \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 chunk-sizes\TS1/ptm/m/it/1 0 '\T1/ptm/m/it/10 : [], \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 com- Underfull \hbox (badness 6575) in paragraph at lines 3027--3027 \T1/ptm/m/it/10 08 18:24:27 2021\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 , \TS1/ptm/m/ it/10 '\T1/ptm/m/it/10 en-gine\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 : Underfull \hbox (badness 10000) in paragraph at lines 3027--3027 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 ver-sion\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 : 1 }\T1/ptm/m/n/10 , \T1/ptm/m/it/10 file-name=\TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3041--3041 []\T1/ptm/m/it/10 header={\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 author\TS1/ptm/m/it /10 '\T1/ptm/m/it/10 : \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 un-known\TS1/ptm/m/it/ 10 '\T1/ptm/m/it/10 , Underfull \hbox (badness 6493) in paragraph at lines 3041--3041 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 byte-count\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 : 0, \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 chunkcount\TS1/ptm/m/it/10 '\T1/ptm/m/it/ 10 : Underfull \hbox (badness 10000) in paragraph at lines 3041--3041 \T1/ptm/m/it/10 0, \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 chunk-sizes\TS1/ptm/m/it/1 0 '\T1/ptm/m/it/10 : [], \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 com- Underfull \hbox (badness 6575) in paragraph at lines 3041--3041 \T1/ptm/m/it/10 08 18:24:27 2021\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 , \TS1/ptm/m/ it/10 '\T1/ptm/m/it/10 en-gine\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 : Underfull \hbox (badness 10000) in paragraph at lines 3041--3041 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 ver-sion\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 : 1 }\T1/ptm/m/n/10 , \T1/ptm/m/it/10 file-name=\TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3063--3063 []\T1/ptm/m/it/10 header={\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 author\TS1/ptm/m/it /10 '\T1/ptm/m/it/10 : \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 un-known\TS1/ptm/m/it/ 10 '\T1/ptm/m/it/10 , Underfull \hbox (badness 6493) in paragraph at lines 3063--3063 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 byte-count\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 : 0, \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 chunkcount\TS1/ptm/m/it/10 '\T1/ptm/m/it/ 10 : Underfull \hbox (badness 10000) in paragraph at lines 3063--3063 \T1/ptm/m/it/10 0, \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 chunk-sizes\TS1/ptm/m/it/1 0 '\T1/ptm/m/it/10 : [], \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 com- Underfull \hbox (badness 6575) in paragraph at lines 3063--3063 \T1/ptm/m/it/10 08 18:24:27 2021\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 , \TS1/ptm/m/ it/10 '\T1/ptm/m/it/10 en-gine\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 : Underfull \hbox (badness 10000) in paragraph at lines 3063--3063 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 ver-sion\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 : 1 }\T1/ptm/m/n/10 , \T1/ptm/m/it/10 file-name=\TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , [31] Underfull \hbox (badness 10000) in paragraph at lines 3085--3085 []\T1/ptm/m/it/10 header={\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 author\TS1/ptm/m/it /10 '\T1/ptm/m/it/10 : \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 un-known\TS1/ptm/m/it/ 10 '\T1/ptm/m/it/10 , Underfull \hbox (badness 6493) in paragraph at lines 3085--3085 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 byte-count\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 : 0, \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 chunkcount\TS1/ptm/m/it/10 '\T1/ptm/m/it/ 10 : Underfull \hbox (badness 10000) in paragraph at lines 3085--3085 \T1/ptm/m/it/10 0, \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 chunk-sizes\TS1/ptm/m/it/1 0 '\T1/ptm/m/it/10 : [], \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 com- Underfull \hbox (badness 6575) in paragraph at lines 3085--3085 \T1/ptm/m/it/10 08 18:24:27 2021\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 , \TS1/ptm/m/ it/10 '\T1/ptm/m/it/10 en-gine\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 : Underfull \hbox (badness 10000) in paragraph at lines 3085--3085 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 ver-sion\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 : 1 }\T1/ptm/m/n/10 , \T1/ptm/m/it/10 file-name=\TS1/ptm/m/it/10 ''\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3145--3145 \T1/ptm/m/it/10 List[[][]int[][]] = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 data: Underfull \hbox (badness 10000) in paragraph at lines 3145--3145 \T1/ptm/m/it/10 numpy.array = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start: [32] [33] [34] [35] [36] Chapter 2. [37] [38] Overfull \hbox (66.6225pt too wide) in paragraph at lines 3645--3646 []\T1/pcr/m/n/10 emod_api.config.default_from_schema_no_validation\T1/ptm/m/n/1 0 , Overfull \hbox (36.6225pt too wide) in paragraph at lines 3646--3647 []\T1/pcr/m/n/10 emod_api.config.dtk_post_process_adhocevents\T1/ptm/m/n/10 , Overfull \hbox (30.6225pt too wide) in paragraph at lines 3647--3648 []\T1/pcr/m/n/10 emod_api.config.dtk_pre_process_adhocevents\T1/ptm/m/n/10 , Overfull \hbox (12.6225pt too wide) in paragraph at lines 3656--3657 []\T1/pcr/m/n/10 emod_api.demographics.demographics_utils\T1/ptm/m/n/10 , Overfull \hbox (30.6225pt too wide) in paragraph at lines 3657--3658 []\T1/pcr/m/n/10 emod_api.demographics.DemographicsGenerator\T1/ptm/m/n/10 , Overfull \hbox (72.6225pt too wide) in paragraph at lines 3658--3659 []\T1/pcr/m/n/10 emod_api.demographics.DemographicsInputDataParsers\T1/ptm/m/n/ 10 , Overfull \hbox (30.6225pt too wide) in paragraph at lines 3659--3660 []\T1/pcr/m/n/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 , Overfull \hbox (6.6225pt too wide) in paragraph at lines 3660--3661 []\T1/pcr/m/n/10 emod_api.demographics.grid_construction\T1/ptm/m/n/10 , Overfull \hbox (0.6225pt too wide) in paragraph at lines 3664--3665 []\T1/pcr/m/n/10 emod_api.interventions.import_pressure\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3666--3667 []\T1/pcr/m/n/10 emod_api.interventions.simple_vaccine\T1/ptm/m/n/10 , Overfull \hbox (6.6225pt too wide) in paragraph at lines 3671--3672 []\T1/pcr/m/n/10 emod_api.schema.dtk_post_process_schema\T1/ptm/m/n/10 , Overfull \hbox (0.6225pt too wide) in paragraph at lines 3675--3676 []\T1/pcr/m/n/10 emod_api.serialization.CensusAndModPop\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3676--3677 []\T1/pcr/m/n/10 emod_api.serialization.dtkFileSupport\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3678--3679 []\T1/pcr/m/n/10 emod_api.serialization.dtkFileUtility\T1/ptm/m/n/10 , Overfull \hbox (30.6225pt too wide) in paragraph at lines 3679--3680 []\T1/pcr/m/n/10 emod_api.serialization.SerializedPopulation\T1/ptm/m/n/10 , [39] (./institute-for-disease-modeling-emod-api.ind [40] Underfull \hbox (badness 10000) in paragraph at lines 9--11 []\T1/pcr/m/n/10 AddAgeDependentTransmission() Overfull \hbox (34.06111pt too wide) in paragraph at lines 9--11 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 11--13 []\T1/pcr/m/n/10 AddIndividualPropertyAndHINT() Overfull \hbox (34.06111pt too wide) in paragraph at lines 11--13 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 13--15 []\T1/pcr/m/n/10 AddSeasonalForcing() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ul e Overfull \hbox (15.62103pt too wide) in paragraph at lines 13--15 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 15--17 []\T1/pcr/m/n/10 AgeStructureUNWPP() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (15.62103pt too wide) in paragraph at lines 15--17 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Overfull \hbox (7.30118pt too wide) in paragraph at lines 17--19 []\T1/pcr/m/n/10 AgesYears() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration .migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 19--20 []\T1/pcr/m/n/10 AIR \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.migrati on.Migration at- Overfull \hbox (37.49991pt too wide) in paragraph at lines 20--22 []\T1/pcr/m/n/10 append() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializatio n.dtkFileTools.DtkFile.Contents Overfull \hbox (32.4899pt too wide) in paragraph at lines 22--24 []\T1/pcr/m/n/10 append() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializatio n.dtkFileTools.DtkFile.Objects Underfull \hbox (badness 10000) in paragraph at lines 24--26 []\T1/pcr/m/n/10 application() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (7.95116pt too wide) in paragraph at lines 24--26 \T1/ptm/m/it/10 emod_api.config.dtk_post_process_adhocevents\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 26--28 []\T1/pcr/m/n/10 application() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (4.2412pt too wide) in paragraph at lines 26--28 \T1/ptm/m/it/10 emod_api.config.dtk_pre_process_adhocevents\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 28--30 []\T1/pcr/m/n/10 application() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 28--30 \T1/ptm/m/it/10 emod_api.config.dtk_pre_process_w5ml\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 30--32 []\T1/pcr/m/n/10 application() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 30--32 \T1/ptm/m/it/10 emod_api.schema.dtk_post_process_schema\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 32--34 []\T1/pcr/m/n/10 apply_to_defaults_or_nodes() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 i n mod-ule Underfull \hbox (badness 10000) in paragraph at lines 32--34 \T1/ptm/m/it/10 emod_api.demographics.demographics_utils\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 34--36 []\T1/pcr/m/n/10 arcsec_to_deg() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (17.1711pt too wide) in paragraph at lines 34--36 \T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/ptm/m/n/10 ), Overfull \hbox (62.83089pt too wide) in paragraph at lines 36--38 []\T1/pcr/m/n/10 as_dataframe() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channe lreports.channels.ChannelReport Overfull \hbox (41.61118pt too wide) in paragraph at lines 38--40 []\T1/pcr/m/n/10 as_dictionary() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.chann elreports.channels.Channel Overfull \hbox (37.71117pt too wide) in paragraph at lines 40--42 []\T1/pcr/m/n/10 as_dictionary() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.chann elreports.channels.Header Underfull \hbox (badness 10000) in paragraph at lines 44--46 []\T1/pcr/m/n/10 Author() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.mi gration.Migration Underfull \hbox (badness 10000) in paragraph at lines 53--55 []\T1/pcr/m/n/10 BaseInputFile \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 53--55 \T1/ptm/m/it/10 emod_api.demographics.BaseInputFile\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 55--56 []\T1/pcr/m/n/10 basicNode() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 56--58 []\T1/pcr/m/n/10 BroadcastEvent() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 58--60 []\T1/pcr/m/n/10 BroadcastEventToOtherNodes() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 i n mod-ule Overfull \hbox (23.59027pt too wide) in paragraph at lines 61--63 []\T1/pcr/m/n/10 byte_count() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializ ation.dtkFileTools.DtkFile Underfull \hbox (badness 10000) in paragraph at lines 66--68 []\T1/pcr/m/n/10 change_ser_pop() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 66--68 \T1/ptm/m/it/10 emod_api.serialization.CensusAndModPop\T1/ptm/m/n/10 ), Overfull \hbox (68.83089pt too wide) in paragraph at lines 69--71 []\T1/pcr/m/n/10 channel_names() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.chann elreports.channels.ChannelReport Underfull \hbox (badness 10000) in paragraph at lines 71--73 []\T1/pcr/m/n/10 ChannelReport \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Overfull \hbox (38.83089pt too wide) in paragraph at lines 73--75 []\T1/pcr/m/n/10 channels() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channelrep orts.channels.ChannelReport Overfull \hbox (29.59027pt too wide) in paragraph at lines 75--77 []\T1/pcr/m/n/10 chunk_count() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.seriali zation.dtkFileTools.DtkFile [41] Overfull \hbox (29.59027pt too wide) in paragraph at lines 77--79 []\T1/pcr/m/n/10 chunk_sizes() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.seriali zation.dtkFileTools.DtkFile Overfull \hbox (36.91025pt too wide) in paragraph at lines 81--83 []\T1/pcr/m/n/10 compress() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializat ion.dtkFileSupport.EllZeeFour Overfull \hbox (21.29066pt too wide) in paragraph at lines 83--85 []\T1/pcr/m/n/10 compress() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializat ion.dtkFileSupport.Snappy Overfull \hbox (50.91016pt too wide) in paragraph at lines 85--87 []\T1/pcr/m/n/10 compress() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializat ion.dtkFileSupport.Uncompressed Underfull \hbox (badness 10000) in paragraph at lines 87--89 []\T1/pcr/m/n/10 compress() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (23.59027pt too wide) in paragraph at lines 89--91 []\T1/pcr/m/n/10 compressed() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializ ation.dtkFileTools.DtkFile Overfull \hbox (29.59027pt too wide) in paragraph at lines 91--93 []\T1/pcr/m/n/10 compression() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.seriali zation.dtkFileTools.DtkFile Underfull \hbox (badness 10000) in paragraph at lines 93--95 []\T1/pcr/m/n/10 ConstantMortality() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (15.62103pt too wide) in paragraph at lines 93--95 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 95--97 []\T1/pcr/m/n/10 construct() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 95--97 \T1/ptm/m/it/10 emod_api.demographics.grid_construction\T1/ptm/m/n/10 ), Overfull \hbox (46.65079pt too wide) in paragraph at lines 97--99 \T1/ptm/m/it/10 emod_api.demographics.DemographicsInputDataParsers\T1/ptm/m/n/1 0 ), Overfull \hbox (12.84114pt too wide) in paragraph at lines 99--101 []\T1/pcr/m/n/10 creation_date() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.weath er.weather.Metadata Overfull \hbox (7.47115pt too wide) in paragraph at lines 101--103 []\T1/pcr/m/n/10 creation_date() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.weath er.weather.Weather Underfull \hbox (badness 10000) in paragraph at lines 106--108 []\T1/pcr/m/n/10 data() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channelreports .channels.Channel Underfull \hbox (badness 10000) in paragraph at lines 108--110 []\T1/pcr/m/n/10 data() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.spatialreports .spatial.SpatialNode Underfull \hbox (badness 10000) in paragraph at lines 114--116 []\T1/pcr/m/n/10 datavalue_count() Underfull \hbox (badness 10000) in paragraph at lines 114--116 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.weather.weather.Metadata prop- Underfull \hbox (badness 10000) in paragraph at lines 116--118 []\T1/pcr/m/n/10 datavalue_count() Underfull \hbox (badness 10000) in paragraph at lines 116--118 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.weather.weather.Weather prop- Overfull \hbox (20.22127pt too wide) in paragraph at lines 118--120 []\T1/pcr/m/n/10 DatavalueCount() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migr ation.migration.Layer Overfull \hbox (37.30118pt too wide) in paragraph at lines 120--122 []\T1/pcr/m/n/10 DatavalueCount() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migr ation.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 122--124 []\T1/pcr/m/n/10 date() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serialization. dtkFileTools.DtkFile Overfull \hbox (19.30118pt too wide) in paragraph at lines 124--126 []\T1/pcr/m/n/10 DateCreated() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migrati on.migration.Migration Overfull \hbox (10.77174pt too wide) in paragraph at lines 126--128 []\T1/pcr/m/n/10 default_density \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demog raphics.Node.Node Underfull \hbox (badness 10000) in paragraph at lines 128--130 []\T1/pcr/m/n/10 default_population Underfull \hbox (badness 10000) in paragraph at lines 128--130 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Node.Node at- Underfull \hbox (badness 7291) in paragraph at lines 130--132 []\T1/pcr/m/n/10 DefaultSusceptibilityDistribution() \T1/ptm/m/n/10 (\T1/ptm/m/ it/10 in Overfull \hbox (46.96086pt too wide) in paragraph at lines 130--132 \T1/ptm/m/it/10 mod-ule emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/ 10 ), Underfull \hbox (badness 10000) in paragraph at lines 132--134 []\T1/pcr/m/n/10 DelayedIntervention() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 134--136 []\T1/pcr/m/n/10 Demographics \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 134--136 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 136--138 []\T1/pcr/m/n/10 DemographicsGenerator \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Overfull \hbox (17.1711pt too wide) in paragraph at lines 136--138 \T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 138--140 []\T1/pcr/m/n/10 DemographicsType \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Overfull \hbox (17.1711pt too wide) in paragraph at lines 138--140 \T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 140--142 []\T1/pcr/m/n/10 do_mapping_from_events() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule Overfull \hbox (4.2412pt too wide) in paragraph at lines 140--142 \T1/ptm/m/it/10 emod_api.config.dtk_pre_process_adhocevents\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 143--145 []\T1/pcr/m/n/10 dtk_to_schema() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (56.83089pt too wide) in paragraph at lines 145--147 []\T1/pcr/m/n/10 dtk_version() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channel reports.channels.ChannelReport Overfull \hbox (25.71117pt too wide) in paragraph at lines 147--149 []\T1/pcr/m/n/10 dtk_version() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channel reports.channels.Header Underfull \hbox (badness 10000) in paragraph at lines 150--152 []\T1/pcr/m/n/10 DtkFile.Contents \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 152--154 []\T1/pcr/m/n/10 DtkFile.Objects \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 154--156 []\T1/pcr/m/n/10 DtkFileV1 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 156--158 []\T1/pcr/m/n/10 DtkFileV2 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 158--160 []\T1/pcr/m/n/10 DtkFileV2.NodesV2 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 160--162 []\T1/pcr/m/n/10 DtkFileV3 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 162--164 []\T1/pcr/m/n/10 DtkFileV3.NodesV3 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 164--166 []\T1/pcr/m/n/10 DtkFileV4 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 166--168 []\T1/pcr/m/n/10 DtkHeader \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 168--170 []\T1/pcr/m/n/10 duplicate_nodeID_check() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule Overfull \hbox (46.65079pt too wide) in paragraph at lines 168--170 \T1/ptm/m/it/10 emod_api.demographics.DemographicsInputDataParsers\T1/ptm/m/n/1 0 ), [42] Underfull \hbox (badness 10000) in paragraph at lines 173--175 []\T1/pcr/m/n/10 EllZeeFour \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Overfull \hbox (64.1225pt too wide) in paragraph at lines 187--188 []\T1/pcr/m/n/10 emod_api.config.default_from_schema_no_validation Overfull \hbox (34.1225pt too wide) in paragraph at lines 189--190 []\T1/pcr/m/n/10 emod_api.config.dtk_post_process_adhocevents Overfull \hbox (28.1225pt too wide) in paragraph at lines 191--192 []\T1/pcr/m/n/10 emod_api.config.dtk_pre_process_adhocevents Overfull \hbox (10.1225pt too wide) in paragraph at lines 209--210 []\T1/pcr/m/n/10 emod_api.demographics.demographics_utils Overfull \hbox (28.1225pt too wide) in paragraph at lines 211--212 []\T1/pcr/m/n/10 emod_api.demographics.DemographicsGenerator Overfull \hbox (70.1225pt too wide) in paragraph at lines 213--214 []\T1/pcr/m/n/10 emod_api.demographics.DemographicsInputDataParsers Overfull \hbox (28.1225pt too wide) in paragraph at lines 215--216 []\T1/pcr/m/n/10 emod_api.demographics.DemographicsTemplates Overfull \hbox (4.1225pt too wide) in paragraph at lines 217--218 []\T1/pcr/m/n/10 emod_api.demographics.grid_construction Overfull \hbox (4.1225pt too wide) in paragraph at lines 239--240 []\T1/pcr/m/n/10 emod_api.schema.dtk_post_process_schema Overfull \hbox (28.1225pt too wide) in paragraph at lines 255--256 []\T1/pcr/m/n/10 emod_api.serialization.SerializedPopulation Overfull \hbox (16.1225pt too wide) in paragraph at lines 267--269 []\T1/pcr/m/n/10 EquilibriumAgeDistFromBirthAndMortRates() Overfull \hbox (59.97073pt too wide) in paragraph at lines 267--269 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule emod_api.demographics.DemographicsTe mplates\T1/ptm/m/n/10 ), Overfull \hbox (15.62103pt too wide) in paragraph at lines 269--271 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 271--273 []\T1/pcr/m/n/10 examine_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule [43] Underfull \hbox (badness 10000) in paragraph at lines 281--283 []\T1/pcr/m/n/10 fill_nodes_legacy() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (46.65079pt too wide) in paragraph at lines 281--283 \T1/ptm/m/it/10 emod_api.demographics.DemographicsInputDataParsers\T1/ptm/m/n/1 0 ), Overfull \hbox (4.62106pt too wide) in paragraph at lines 283--285 []\T1/pcr/m/n/10 finalize() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.schema_to_ class.ReadOnlyDict Overfull \hbox (36.30013pt too wide) in paragraph at lines 285--287 []\T1/pcr/m/n/10 find() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule emod_api.ser ialization.SerializedPopulation\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 287--289 []\T1/pcr/m/n/10 flattenConfig() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (81.59949pt too wide) in paragraph at lines 289--291 []\T1/pcr/m/n/10 flush() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serialization .SerializedPopulation.SerializedPopulation Underfull \hbox (badness 10000) in paragraph at lines 293--295 []\T1/pcr/m/n/10 from_csv() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 293--295 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 295--297 []\T1/pcr/m/n/10 from_data() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demograph ics.Node.Node Underfull \hbox (badness 10000) in paragraph at lines 297--299 []\T1/pcr/m/n/10 from_dataframe() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (17.1711pt too wide) in paragraph at lines 297--299 \T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 301--303 []\T1/pcr/m/n/10 from_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.weather.w eather.Metadata Underfull \hbox (badness 10000) in paragraph at lines 303--305 []\T1/pcr/m/n/10 from_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 303--305 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 305--307 []\T1/pcr/m/n/10 from_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (17.1711pt too wide) in paragraph at lines 305--307 \T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 307--308 []\T1/pcr/m/n/10 from_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 308--310 []\T1/pcr/m/n/10 from_params() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 308--310 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 310--311 []\T1/pcr/m/n/10 from_params() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 311--313 []\T1/pcr/m/n/10 from_pop_csv() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 311--313 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 313--315 []\T1/pcr/m/n/10 from_template_node() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 313--315 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 315--317 []\T1/pcr/m/n/10 FullRisk() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (15.62103pt too wide) in paragraph at lines 315--317 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Overfull \hbox (37.30118pt too wide) in paragraph at lines 320--322 []\T1/pcr/m/n/10 GenderDataType() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migr ation.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 322--324 []\T1/pcr/m/n/10 generate_demographics() Overfull \hbox (115.97037pt too wide) in paragraph at lines 322--324 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator.Dem ographicsGenerator Overfull \hbox (80.97084pt too wide) in paragraph at lines 324--326 []\T1/pcr/m/n/10 generate_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demog raphics.BaseInputFile.BaseInputFile Overfull \hbox (85.96114pt too wide) in paragraph at lines 326--328 []\T1/pcr/m/n/10 generate_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demog raphics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 328--330 []\T1/pcr/m/n/10 generate_headers() Overfull \hbox (29.07082pt too wide) in paragraph at lines 328--330 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.BaseInputFile.BaseInputFi le Underfull \hbox (badness 10000) in paragraph at lines 330--332 []\T1/pcr/m/n/10 generate_metadata() Overfull \hbox (115.97037pt too wide) in paragraph at lines 330--332 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.DemographicsGenerator.Dem ographicsGenerator Overfull \hbox (173.87039pt too wide) in paragraph at lines 332--334 []\T1/pcr/m/n/10 generate_nodes() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demo graphics.DemographicsGenerator.DemographicsGenerator Underfull \hbox (badness 10000) in paragraph at lines 335--337 []\T1/pcr/m/n/10 get_bbox() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 335--337 \T1/ptm/m/it/10 emod_api.demographics.grid_construction\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 337--339 []\T1/pcr/m/n/10 get_class_with_defaults() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in m od-ule Overfull \hbox (62.64088pt too wide) in paragraph at lines 339--341 \T1/ptm/m/it/10 mod-ule emod_api.config.default_from_schema_no_validation\T1/pt m/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 344--346 []\T1/pcr/m/n/10 get_grid_cell_id() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 344--346 \T1/ptm/m/it/10 emod_api.demographics.grid_construction\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 346--348 []\T1/pcr/m/n/10 get_next_individual_suid() Overfull \hbox (77.69946pt too wide) in paragraph at lines 346--348 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serialization.SerializedPopulation.Ser ializedPopulation Underfull \hbox (badness 10000) in paragraph at lines 348--350 []\T1/pcr/m/n/10 get_next_infection_suid() Overfull \hbox (77.69946pt too wide) in paragraph at lines 348--350 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serialization.SerializedPopulation.Ser ializedPopulation Overfull \hbox (55.96114pt too wide) in paragraph at lines 350--352 []\T1/pcr/m/n/10 get_node() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographi cs.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 352--354 []\T1/pcr/m/n/10 get_node_ids_from_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 352--354 \T1/ptm/m/it/10 emod_api.demographics.Demographics\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 354--356 []\T1/pcr/m/n/10 get_node_offsets() Underfull \hbox (badness 10000) in paragraph at lines 354--356 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 356--358 []\T1/pcr/m/n/10 get_node_pops_from_params() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 358--360 []\T1/pcr/m/n/10 get_parameters() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 358--360 \T1/ptm/m/it/10 emod_api.serialization.SerializedPopulation\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 361--362 []\T1/pcr/m/n/10 get_trigger_list() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule [44] Underfull \hbox (badness 10000) in paragraph at lines 362--364 []\T1/pcr/m/n/10 get_waning_from_params() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 364--366 []\T1/pcr/m/n/10 get_xpix_ypix() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (26.83089pt too wide) in paragraph at lines 370--372 []\T1/pcr/m/n/10 header() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channelrepor ts.channels.ChannelReport Underfull \hbox (badness 10000) in paragraph at lines 381--383 []\T1/pcr/m/n/10 id() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.spatialreports.s patial.SpatialNode Underfull \hbox (badness 7308) in paragraph at lines 383--384 []\T1/pcr/m/n/10 id() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.weather.weather. 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emod_api.migration.migration.Migration Overfull \hbox (20.8303pt too wide) in paragraph at lines 410--412 []\T1/pcr/m/n/10 interval() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.spatialrep orts.spatial.SpatialReport Overfull \hbox (13.30058pt too wide) in paragraph at lines 412--414 []\T1/pcr/m/n/10 INTERVENTION \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migratio n.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 418--420 []\T1/pcr/m/n/10 lat_lon_from_nodeid() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 421--423 []\T1/pcr/m/n/10 LINEAR_INTERPOLATION Underfull \hbox (badness 10000) in paragraph at lines 421--423 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 423--425 []\T1/pcr/m/n/10 load_default_config_as_rod() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 i n mod-ule Overfull \hbox (31.30106pt too wide) in paragraph at lines 423--425 \T1/ptm/m/it/10 emod_api.config.default_from_schema_no_validation\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 425--427 []\T1/pcr/m/n/10 LOCAL \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.migra tion.Migration Underfull \hbox (badness 10000) in paragraph at lines 427--429 []\T1/pcr/m/n/10 lon_lat_2_point() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 427--429 \T1/ptm/m/it/10 emod_api.demographics.grid_construction\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 432--434 []\T1/pcr/m/n/10 make_config_from_poi() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod- ule Underfull \hbox (badness 10000) in paragraph at lines 432--434 \T1/ptm/m/it/10 emod_api.config.from_poi_and_binary\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 434--436 []\T1/pcr/m/n/10 make_config_from_poi_and_config_dict() Overfull \hbox (16.3614pt too wide) in paragraph at lines 434--436 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule emod_api.config.from_poi_and_binary\ T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 436--438 []\T1/pcr/m/n/10 make_config_from_poi_and_config_file() Overfull \hbox (16.3614pt too wide) in paragraph at lines 436--438 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule emod_api.config.from_poi_and_binary\ T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 438--440 []\T1/pcr/m/n/10 make_config_from_poi_and_schema() \T1/ptm/m/n/10 (\T1/ptm/m/it /10 in Overfull \hbox (3.35153pt too wide) in paragraph at lines 438--440 \T1/ptm/m/it/10 mod-ule emod_api.config.from_poi_and_binary\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 440--441 []\T1/pcr/m/n/10 MALE \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.migrat ion.Migration at- Underfull \hbox (badness 10000) in paragraph at lines 444--445 []\T1/pcr/m/n/10 metadata() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.weather.we ather.Weather Overfull \hbox (31.30118pt too wide) in paragraph at lines 446--448 []\T1/pcr/m/n/10 MigrationType() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migra tion.migration.Migration [45] Overfull \hbox (2.6225pt too wide) in paragraph at lines 454--455 []| \T1/pcr/m/n/10 emod_api.config.default_from_schema\T1/ptm/m/n/10 , Overfull \hbox (86.6225pt too wide) in paragraph at lines 455--456 []| \T1/pcr/m/n/10 emod_api.config.default_from_schema_no_validation\T1/ptm/m/n /10 , Overfull \hbox (56.6225pt too wide) in paragraph at lines 456--457 []| \T1/pcr/m/n/10 emod_api.config.dtk_post_process_adhocevents\T1/ptm/m/n/10 , Overfull \hbox (50.6225pt too wide) in paragraph at lines 457--458 []| \T1/pcr/m/n/10 emod_api.config.dtk_pre_process_adhocevents\T1/ptm/m/n/10 , Overfull \hbox (8.6225pt too wide) in paragraph at lines 458--459 []| \T1/pcr/m/n/10 emod_api.config.dtk_pre_process_w5ml\T1/ptm/m/n/10 , Overfull \hbox (2.6225pt too wide) in paragraph at lines 460--461 []| \T1/pcr/m/n/10 emod_api.config.from_poi_and_binary\T1/ptm/m/n/10 , 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paragraph at lines 543--545 []\T1/pcr/m/n/10 NodeOffsets() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migrati on.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 545--547 []\T1/pcr/m/n/10 Nodes() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.mig ration.Migration Underfull \hbox (badness 5802) in paragraph at lines 547--549 []\T1/pcr/m/n/10 nodes() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serialization .dtkFileTools.DtkFile Overfull \hbox (81.59949pt too wide) in paragraph at lines 549--551 []\T1/pcr/m/n/10 nodes() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serialization .SerializedPopulation.SerializedPopulation Overfull \hbox (2.8303pt too wide) in paragraph at lines 551--553 []\T1/pcr/m/n/10 nodes() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.spatialreport s.spatial.SpatialReport Underfull \hbox (badness 10000) in paragraph at lines 554--555 []\T1/pcr/m/n/10 nodes() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.weather.weath er.Weather prop- Underfull \hbox (badness 10000) in paragraph at lines 555--557 []\T1/pcr/m/n/10 nodes_for_DTK() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 557--559 []\T1/pcr/m/n/10 NoInitialPrevalence() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-u le Overfull \hbox (15.62103pt too wide) in paragraph at lines 557--559 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 559--561 []\T1/pcr/m/n/10 NoMigrationHeterogeneity() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (15.62103pt too wide) in paragraph at lines 559--561 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 561--563 []\T1/pcr/m/n/10 NoRisk() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (15.62103pt too wide) in paragraph at lines 561--563 \T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Overfull \hbox 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606--608 []\T1/pcr/m/n/10 res_in_degrees \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demogr aphics.Node.Node Underfull \hbox (badness 10000) in paragraph at lines 611--613 []\T1/pcr/m/n/10 SAME_FOR_BOTH_GENDERS Underfull \hbox (badness 10000) in paragraph at lines 611--613 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 614--616 []\T1/pcr/m/n/10 ScheduledCampaignEvent() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 616--618 []\T1/pcr/m/n/10 schema_to_config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 616--618 \T1/ptm/m/it/10 emod_api.config.from_poi_and_binary\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 618--620 []\T1/pcr/m/n/10 schema_to_config_subnode() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (31.30106pt too wide) in paragraph at lines 618--620 \T1/ptm/m/it/10 emod_api.config.default_from_schema_no_validation\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 620--622 []\T1/pcr/m/n/10 SchemaConfigBuilder \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 622--624 []\T1/pcr/m/n/10 SchemaConfigBuilder \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 624--625 []\T1/pcr/m/n/10 SEA \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.migration.migrati on.Migration at- Underfull \hbox (badness 10000) in paragraph at lines 625--627 []\T1/pcr/m/n/10 seed_by_coverage() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 627--629 []\T1/pcr/m/n/10 SerializedPopulation \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 627--629 \T1/ptm/m/it/10 emod_api.serialization.SerializedPopulation\T1/ptm/m/n/10 ), [47] Underfull \hbox (badness 10000) in paragraph at lines 629--631 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\T1/ptm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/10 ), Overfull \hbox (173.87039pt too wide) in paragraph at lines 645--647 []\T1/pcr/m/n/10 set_resolution() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demo graphics.DemographicsGenerator.DemographicsGenerator Underfull \hbox (badness 10000) in paragraph at lines 647--649 []\T1/pcr/m/n/10 set_risk_mod() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 647--649 \T1/ptm/m/it/10 emod_api.demographics.demographics_utils\T1/ptm/m/n/10 ), Overfull \hbox (16.62106pt too wide) in paragraph at lines 649--651 []\T1/pcr/m/n/10 set_schema() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.schema_t o_class.ReadOnlyDict Underfull \hbox (badness 10000) in paragraph at lines 651--653 []\T1/pcr/m/n/10 set_schema() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 651--653 \T1/ptm/m/it/10 emod_api.config.from_poi_and_binary\T1/ptm/m/n/10 ), Underfull 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wide) in paragraph at lines 659--661 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 661--663 []\T1/pcr/m/n/10 SetDefaultFromTemplate() Overfull \hbox (34.06111pt too wide) in paragraph at lines 661--663 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 663--665 []\T1/pcr/m/n/10 SetDefaultIndividualAttributes() Overfull \hbox (34.06111pt too wide) in paragraph at lines 663--665 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 665--667 []\T1/pcr/m/n/10 SetDefaultIndividualProperties() Overfull \hbox (34.06111pt too wide) in paragraph at lines 665--667 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 667--669 []\T1/pcr/m/n/10 SetDefaultNodeAttributes() 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paragraph at lines 683--685 []\T1/pcr/m/n/10 SimpleSusceptibilityDistribution() \T1/ptm/m/n/10 (\T1/ptm/m/i t/10 in Overfull \hbox (46.96086pt too wide) in paragraph at lines 683--685 \T1/ptm/m/it/10 mod-ule emod_api.demographics.DemographicsTemplates\T1/ptm/m/n/ 10 ), Overfull \hbox (34.70026pt too wide) in paragraph at lines 685--687 []\T1/pcr/m/n/10 simulation() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializ ation.dtkFileTools.DtkFileV1 Overfull \hbox (34.70026pt too wide) in paragraph at lines 687--689 []\T1/pcr/m/n/10 simulation() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializ ation.dtkFileTools.DtkFileV2 Overfull \hbox (34.70026pt too wide) in paragraph at lines 689--691 []\T1/pcr/m/n/10 simulation() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.serializ ation.dtkFileTools.DtkFileV3 Overfull \hbox (2.94016pt too wide) in paragraph at lines 691--692 []\T1/pcr/m/n/10 Snappy \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in emod_api.seria lization.dtkFileSupport\T1/ptm/m/n/10 ), Underfull 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775--777 []\T1/pcr/m/n/10 write_default_from_schema() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (31.30106pt too wide) in paragraph at lines 775--777 \T1/ptm/m/it/10 emod_api.config.default_from_schema_no_validation\T1/ptm/m/n/10 ), Overfull \hbox (50.83089pt too wide) in paragraph at lines 777--779 []\T1/pcr/m/n/10 write_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.channelr eports.channels.ChannelReport Overfull \hbox (32.8303pt too wide) in paragraph at lines 779--781 []\T1/pcr/m/n/10 write_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.spatialr eports.spatial.SpatialReport Underfull \hbox (badness 10000) in paragraph at lines 783--784 []\T1/pcr/m/n/10 write_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emod_api.weather. weather.Weather Underfull \hbox (badness 10000) in paragraph at lines 787--789 []\T1/pcr/m/n/10 xpix_ypix_from_lat_lon() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule [49]) (./institute-for-disease-modeling-emod-api.aux) ) (see the transcript file for 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