Read the Docs build information Build id: 570710 Project: northeastern-university-rc-public-documentation Version: latest Commit: 3fe65c9a0a40c9ef0cecc77b59d144ed067e7a54 Date: 2021-02-23T19:48:01.725468Z State: finished Success: True [rtd-command-info] start-time: 2021-02-23T19:48:03.250915Z, end-time: 2021-02-23T19:48:05.971561Z, duration: 2, exit-code: 0 git clone --no-single-branch --depth 50 https://github.com/neu-rc-admin/rc-public-documentation.git . Cloning into '.'... [rtd-command-info] start-time: 2021-02-23T19:48:06.242007Z, end-time: 2021-02-23T19:48:06.669459Z, duration: 0, exit-code: 0 git checkout --force origin/master Note: checking out 'origin/master'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at 3fe65c9 hardware update [rtd-command-info] start-time: 2021-02-23T19:48:06.778434Z, end-time: 2021-02-23T19:48:06.835218Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2021-02-23T19:48:08.670302Z, end-time: 2021-02-23T19:48:12.631128Z, duration: 3, exit-code: 0 python3.7 -mvirtualenv Using base prefix '/home/docs/.pyenv/versions/3.7.9' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/envs/latest/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/envs/latest/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2021-02-23T19:48:12.756563Z, end-time: 2021-02-23T19:48:14.388805Z, duration: 1, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip setuptools==41.0.1 Requirement already satisfied: pip in /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/envs/latest/lib/python3.7/site-packages (21.0.1) Collecting setuptools==41.0.1 Downloading setuptools-41.0.1-py2.py3-none-any.whl (575 kB) Installing collected packages: setuptools Attempting uninstall: setuptools Found existing installation: setuptools 53.0.0 Uninstalling setuptools-53.0.0: Successfully uninstalled setuptools-53.0.0 Successfully installed setuptools-41.0.1 [rtd-command-info] start-time: 2021-02-23T19:48:14.510435Z, end-time: 2021-02-23T19:48:22.860675Z, duration: 8, exit-code: 0 python -m pip install --upgrade --no-cache-dir docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 six commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<2.2 Collecting docutils==0.14 Downloading docutils-0.14-py3-none-any.whl (543 kB) Collecting mock==1.0.1 Downloading mock-1.0.1.zip (861 kB) Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting six Downloading six-1.15.0-py2.py3-none-any.whl (10 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.5-py2.py3-none-any.whl (3.1 MB) Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) Collecting readthedocs-sphinx-ext<2.2 Downloading readthedocs_sphinx_ext-2.1.3-py2.py3-none-any.whl (11 kB) Collecting future Downloading future-0.18.2.tar.gz (829 kB) Collecting requests Downloading requests-2.25.1-py2.py3-none-any.whl (61 kB) Collecting Jinja2>=2.9 Downloading Jinja2-2.11.3-py2.py3-none-any.whl (125 kB) Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.1.0-py2.py3-none-any.whl (93 kB) Collecting Pygments>=2.0 Downloading Pygments-2.8.0-py3-none-any.whl (983 kB) Collecting packaging Downloading packaging-20.9-py2.py3-none-any.whl (40 kB) Collecting sphinxcontrib-websupport Downloading sphinxcontrib_websupport-1.2.4-py2.py3-none-any.whl (39 kB) Collecting imagesize Downloading imagesize-1.2.0-py2.py3-none-any.whl (4.8 kB) Collecting babel!=2.0,>=1.3 Downloading Babel-2.9.0-py2.py3-none-any.whl (8.8 MB) Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/envs/latest/lib/python3.7/site-packages (from sphinx<2) (41.0.1) Collecting pytz>=2015.7 Downloading pytz-2021.1-py2.py3-none-any.whl (510 kB) Collecting MarkupSafe>=0.23 Downloading MarkupSafe-1.1.1-cp37-cp37m-manylinux2010_x86_64.whl (33 kB) Collecting urllib3<1.27,>=1.21.1 Downloading urllib3-1.26.3-py2.py3-none-any.whl (137 kB) Collecting chardet<5,>=3.0.2 Downloading chardet-4.0.0-py2.py3-none-any.whl (178 kB) Collecting certifi>=2017.4.17 Downloading certifi-2020.12.5-py2.py3-none-any.whl (147 kB) Collecting idna<3,>=2.5 Downloading idna-2.10-py2.py3-none-any.whl (58 kB) Collecting pyparsing>=2.0.2 Downloading pyparsing-2.4.7-py2.py3-none-any.whl (67 kB) Collecting sphinxcontrib-serializinghtml Downloading sphinxcontrib_serializinghtml-1.1.4-py2.py3-none-any.whl (89 kB) Building wheels for collected packages: mock, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23755 sha256=b8e6cf0d47776ccc3313ad6b1981d39eec72892f7ce400d8507238a7b00ac3e8 Stored in directory: /tmp/pip-ephem-wheel-cache-nukpb8gm/wheels/7a/94/b1/0fdc5339a5bd487a5cc15421ec200d9ba3e2aa7190e4a727f1 Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491059 sha256=b1172aaa80694c7f136bf27b580bb0975d33f9c3321aab2c8ebf4ba5804031e3 Stored in directory: /tmp/pip-ephem-wheel-cache-nukpb8gm/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0 Successfully built mock future Installing collected packages: urllib3, sphinxcontrib-serializinghtml, pytz, pyparsing, MarkupSafe, idna, chardet, certifi, sphinxcontrib-websupport, snowballstemmer, six, requests, Pygments, packaging, Jinja2, imagesize, future, docutils, babel, alabaster, sphinx, commonmark, sphinx-rtd-theme, recommonmark, readthedocs-sphinx-ext, pillow, mock Successfully installed Jinja2-2.11.3 MarkupSafe-1.1.1 Pygments-2.8.0 alabaster-0.7.12 babel-2.9.0 certifi-2020.12.5 chardet-4.0.0 commonmark-0.8.1 docutils-0.14 future-0.18.2 idna-2.10 imagesize-1.2.0 mock-1.0.1 packaging-20.9 pillow-5.4.1 pyparsing-2.4.7 pytz-2021.1 readthedocs-sphinx-ext-2.1.3 recommonmark-0.5.0 requests-2.25.1 six-1.15.0 snowballstemmer-2.1.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-serializinghtml-1.1.4 sphinxcontrib-websupport-1.2.4 urllib3-1.26.3 [rtd-command-info] start-time: 2021-02-23T19:48:22.970421Z, end-time: 2021-02-23T19:48:23.980674Z, duration: 1, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r docs/requirements.txt Collecting sphinx-markdown-tables==0.0.12 Downloading sphinx_markdown_tables-0.0.12-py3-none-any.whl (15 kB) Requirement already satisfied: sphinx-rtd-theme==0.4.3 in /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/envs/latest/lib/python3.7/site-packages (from -r docs/requirements.txt (line 2)) (0.4.3) Collecting markdown==3.0.1 Downloading Markdown-3.0.1-py2.py3-none-any.whl (89 kB) Requirement already satisfied: sphinx in /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/envs/latest/lib/python3.7/site-packages (from sphinx-rtd-theme==0.4.3->-r docs/requirements.txt (line 2)) (1.8.5) Requirement already satisfied: alabaster<0.8,>=0.7 in /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/envs/latest/lib/python3.7/site-packages (from sphinx->sphinx-rtd-theme==0.4.3->-r docs/requirements.txt (line 2)) (0.7.12) Requirement already satisfied: Pygments>=2.0 in /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/envs/latest/lib/python3.7/site-packages (from sphinx->sphinx-rtd-theme==0.4.3->-r docs/requirements.txt (line 2)) (2.8.0) Requirement already satisfied: imagesize in /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/envs/latest/lib/python3.7/site-packages (from sphinx->sphinx-rtd-theme==0.4.3->-r docs/requirements.txt (line 2)) (1.2.0) Requirement already satisfied: docutils>=0.11 in /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/envs/latest/lib/python3.7/site-packages (from sphinx->sphinx-rtd-theme==0.4.3->-r docs/requirements.txt (line 2)) (0.14) Requirement already satisfied: snowballstemmer>=1.1 in /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/envs/latest/lib/python3.7/site-packages (from sphinx->sphinx-rtd-theme==0.4.3->-r docs/requirements.txt (line 2)) (2.1.0) Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/envs/latest/lib/python3.7/site-packages (from sphinx->sphinx-rtd-theme==0.4.3->-r docs/requirements.txt (line 2)) (41.0.1) Requirement already satisfied: sphinxcontrib-websupport in /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/envs/latest/lib/python3.7/site-packages (from sphinx->sphinx-rtd-theme==0.4.3->-r docs/requirements.txt (line 2)) (1.2.4) Requirement already satisfied: requests>=2.0.0 in /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/envs/latest/lib/python3.7/site-packages (from sphinx->sphinx-rtd-theme==0.4.3->-r docs/requirements.txt (line 2)) (2.25.1) Requirement already satisfied: Jinja2>=2.3 in /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/envs/latest/lib/python3.7/site-packages (from sphinx->sphinx-rtd-theme==0.4.3->-r docs/requirements.txt (line 2)) (2.11.3) Requirement already satisfied: packaging in /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/envs/latest/lib/python3.7/site-packages (from sphinx->sphinx-rtd-theme==0.4.3->-r docs/requirements.txt (line 2)) (20.9) Requirement already satisfied: six>=1.5 in /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/envs/latest/lib/python3.7/site-packages (from sphinx->sphinx-rtd-theme==0.4.3->-r docs/requirements.txt (line 2)) (1.15.0) Requirement already satisfied: babel!=2.0,>=1.3 in /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/envs/latest/lib/python3.7/site-packages (from sphinx->sphinx-rtd-theme==0.4.3->-r docs/requirements.txt (line 2)) (2.9.0) Requirement already satisfied: pytz>=2015.7 in /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/envs/latest/lib/python3.7/site-packages (from babel!=2.0,>=1.3->sphinx->sphinx-rtd-theme==0.4.3->-r docs/requirements.txt (line 2)) (2021.1) Requirement already satisfied: MarkupSafe>=0.23 in /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/envs/latest/lib/python3.7/site-packages (from Jinja2>=2.3->sphinx->sphinx-rtd-theme==0.4.3->-r docs/requirements.txt (line 2)) (1.1.1) Requirement already satisfied: idna<3,>=2.5 in /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/envs/latest/lib/python3.7/site-packages (from requests>=2.0.0->sphinx->sphinx-rtd-theme==0.4.3->-r docs/requirements.txt (line 2)) (2.10) Requirement already satisfied: urllib3<1.27,>=1.21.1 in /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/envs/latest/lib/python3.7/site-packages (from requests>=2.0.0->sphinx->sphinx-rtd-theme==0.4.3->-r docs/requirements.txt (line 2)) (1.26.3) Requirement already satisfied: chardet<5,>=3.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/envs/latest/lib/python3.7/site-packages (from requests>=2.0.0->sphinx->sphinx-rtd-theme==0.4.3->-r docs/requirements.txt (line 2)) (4.0.0) Requirement already satisfied: certifi>=2017.4.17 in /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/envs/latest/lib/python3.7/site-packages (from requests>=2.0.0->sphinx->sphinx-rtd-theme==0.4.3->-r docs/requirements.txt (line 2)) (2020.12.5) Requirement already satisfied: pyparsing>=2.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/envs/latest/lib/python3.7/site-packages (from packaging->sphinx->sphinx-rtd-theme==0.4.3->-r docs/requirements.txt (line 2)) (2.4.7) Requirement already satisfied: sphinxcontrib-serializinghtml in /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/envs/latest/lib/python3.7/site-packages (from sphinxcontrib-websupport->sphinx->sphinx-rtd-theme==0.4.3->-r docs/requirements.txt (line 2)) (1.1.4) Installing collected packages: markdown, sphinx-markdown-tables Successfully installed markdown-3.0.1 sphinx-markdown-tables-0.0.12 [rtd-command-info] start-time: 2021-02-23T19:48:25.031429Z, end-time: 2021-02-23T19:48:25.102015Z, duration: 0, exit-code: 0 cat docs/source/conf.py # Configuration file for the Sphinx documentation builder. # # This file only contains a selection of the most common options. For a full # list see the documentation: # http://www.sphinx-doc.org/en/master/config # -- Path setup -------------------------------------------------------------- # If extensions (or modules to document with autodoc) are in another directory, # add these directories to sys.path here. If the directory is relative to the # documentation root, use os.path.abspath to make it absolute, like shown here. # # import os # import sys # sys.path.insert(0, os.path.abspath('.')) # -- Project information ----------------------------------------------------- project = 'Northeastern University Research Computing' copyright = '2019-2021, Northeastern University Research Computing' author = 'Northeastern University Research Computing' # The full version, including alpha/beta/rc tags release = '1.0.2' # -- General configuration --------------------------------------------------- # Add any Sphinx extension module names here, as strings. They can be # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom # ones. extensions = ['sphinx_markdown_tables',] # Add any paths that contain templates here, relative to this directory. templates_path = ['_templates'] # List of patterns, relative to source directory, that match files and # directories to ignore when looking for source files. # This pattern also affects html_static_path and html_extra_path. exclude_patterns = [] # -- Options for HTML output ------------------------------------------------- # The theme to use for HTML and HTML Help pages. See the documentation for # a list of builtin themes. # html_theme = 'sphinx_rtd_theme' #add logo to the upper left in the help system html_logo = 'images/NU_logo_small.png' html_theme_options = {'logo_only': True} # custom css file html_css_files = ['custom.css'] #If true, “(C) Copyright …” is shown in the HTML footer. Default is True. html_show_copyright = True #If true, “Created using Sphinx” is shown in the HTML footer. Default is True. html_show_sphinx = False # Add any paths that contain custom static files (such as style sheets) here, # relative to this directory. They are copied after the builtin static files, # so a file named "default.css" will overwrite the builtin "default.css". html_static_path = ['_static'] master_doc = 'index' #source_suffix = ['.rst'] ########################################################################### # auto-created readthedocs.org specific configuration # ########################################################################### # # The following code was added during an automated build on readthedocs.org # It is auto created and injected for every build. The result is based on the # conf.py.tmpl file found in the readthedocs.org codebase: # https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl # import importlib import sys import os.path from six import string_types from sphinx import version_info # Get suffix for proper linking to GitHub # This is deprecated in Sphinx 1.3+, # as each page can have its own suffix if globals().get('source_suffix', False): if isinstance(source_suffix, string_types): SUFFIX = source_suffix elif isinstance(source_suffix, (list, tuple)): # Sphinx >= 1.3 supports list/tuple to define multiple suffixes SUFFIX = source_suffix[0] elif isinstance(source_suffix, dict): # Sphinx >= 1.8 supports a mapping dictionary for multiple suffixes SUFFIX = list(source_suffix.keys())[0] # make a ``list()`` for py2/py3 compatibility else: # default to .rst SUFFIX = '.rst' else: SUFFIX = '.rst' # Add RTD Static Path. Add to the end because it overwrites previous files. if not 'html_static_path' in globals(): html_static_path = [] if os.path.exists('_static'): html_static_path.append('_static') # Add RTD Theme only if they aren't overriding it already using_rtd_theme = ( ( 'html_theme' in globals() and html_theme in ['default'] and # Allow people to bail with a hack of having an html_style 'html_style' not in globals() ) or 'html_theme' not in globals() ) if using_rtd_theme: theme = importlib.import_module('sphinx_rtd_theme') html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} if 'html_theme_path' in globals(): html_theme_path.append(theme.get_html_theme_path()) else: html_theme_path = [theme.get_html_theme_path()] if globals().get('websupport2_base_url', False): websupport2_base_url = 'https://readthedocs.com/websupport' websupport2_static_url = 'https://assets.readthedocs.com/' #Add project information to the template context. context = { 'using_theme': using_rtd_theme, 'html_theme': html_theme, 'current_version': "latest", 'version_slug': "latest", 'MEDIA_URL': "https://media.readthedocs.com/media/", 'STATIC_URL': "https://assets.readthedocs.com/", 'PRODUCTION_DOMAIN': "readthedocs.com", 'versions': [ ("latest", "/en/latest/"), ], 'downloads': [ ("pdf", "//rc-docs.northeastern.edu/_/downloads/en/latest/pdf/"), ("html", "//rc-docs.northeastern.edu/_/downloads/en/latest/htmlzip/"), ("epub", "//rc-docs.northeastern.edu/_/downloads/en/latest/epub/"), ], 'subprojects': [ ], 'slug': 'northeastern-university-rc-public-documentation', 'name': u'rc-public-documentation', 'rtd_language': u'en', 'programming_language': u'words', 'canonical_url': 'https://rc-docs.northeastern.edu/en/latest/', 'analytics_code': 'UA-53190950-13', 'single_version': False, 'conf_py_path': '/docs/source/', 'api_host': 'https://readthedocs.com', 'github_user': 'neu-rc-admin', 'proxied_api_host': '/_', 'github_repo': 'rc-public-documentation', 'github_version': 'master', 'display_github': True, 'bitbucket_user': 'None', 'bitbucket_repo': 'None', 'bitbucket_version': 'master', 'display_bitbucket': False, 'gitlab_user': 'None', 'gitlab_repo': 'None', 'gitlab_version': 'master', 'display_gitlab': False, 'READTHEDOCS': True, 'using_theme': (html_theme == "default"), 'new_theme': (html_theme == "sphinx_rtd_theme"), 'source_suffix': SUFFIX, 'ad_free': False, 'docsearch_disabled': False, 'user_analytics_code': 'UA-53190950-13', 'global_analytics_code': 'UA-17997319-2', 'commit': '3fe65c9a', } # For sphinx >=1.8 we can use html_baseurl to set the canonical URL. # https://www.sphinx-doc.org/en/master/usage/configuration.html#confval-html_baseurl if version_info >= (1, 8): if not globals().get('html_baseurl'): html_baseurl = context['canonical_url'] context['canonical_url'] = None if 'html_context' in globals(): html_context.update(context) else: html_context = context # Add custom RTD extension if 'extensions' in globals(): # Insert at the beginning because it can interfere # with other extensions. # See https://github.com/rtfd/readthedocs.org/pull/4054 extensions.insert(0, "readthedocs_ext.readthedocs") else: extensions = ["readthedocs_ext.readthedocs"] # Add External version warning banner to the external version documentation if 'branch' == 'external': extensions.insert(1, "readthedocs_ext.external_version_warning") readthedocs_vcs_url = 'None' readthedocs_build_url = 'https://readthedocs.com/projects/northeastern-university-rc-public-documentation/builds/570710/' project_language = 'en' # User's Sphinx configurations language_user = globals().get('language', None) latex_engine_user = globals().get('latex_engine', None) latex_elements_user = globals().get('latex_elements', None) # Remove this once xindy gets installed in Docker image and XINDYOPS # env variable is supported # https://github.com/rtfd/readthedocs-docker-images/pull/98 latex_use_xindy = False chinese = any([ language_user in ('zh_CN', 'zh_TW'), project_language in ('zh_CN', 'zh_TW'), ]) japanese = any([ language_user == 'ja', project_language == 'ja', ]) if chinese: latex_engine = latex_engine_user or 'xelatex' latex_elements_rtd = { 'preamble': '\\usepackage[UTF8]{ctex}\n', } latex_elements = latex_elements_user or latex_elements_rtd elif japanese: latex_engine = latex_engine_user or 'platex' # Make sure our build directory is always excluded exclude_patterns = globals().get('exclude_patterns', []) exclude_patterns.extend(['_build']) [rtd-command-info] start-time: 2021-02-23T19:48:25.270559Z, end-time: 2021-02-23T19:48:27.217503Z, duration: 1, exit-code: 0 python -m sphinx -T -E -b readthedocs -d _build/doctrees-readthedocs -D language=en . _build/html Running Sphinx v1.8.5 loading translations [en]... done making output directory... building [mo]: targets for 0 po files that are out of date building [readthedocs]: targets for 22 source files that are out of date updating environment: 22 added, 0 changed, 0 removed reading sources... [ 4%] classroom/class_use reading sources... [ 9%] get_started/connect reading sources... [ 13%] get_started/get_access reading sources... [ 18%] hardware/hardware_overview reading sources... [ 22%] hardware/partitions reading sources... [ 27%] index reading sources... [ 31%] software/matlab reading sources... [ 36%] software/modules reading sources... [ 40%] software/software reading sources... [ 45%] storage/discovery_storage reading sources... [ 50%] storage/general_storage reading sources... [ 54%] using-discovery/globus reading sources... [ 59%] using-discovery/sbatch reading sources... [ 63%] using-discovery/srun reading sources... [ 68%] using-discovery/transferringdata reading sources... [ 72%] using-discovery/usingslurm reading sources... [ 77%] using-discovery/workingwithgpu reading sources... [ 81%] using-ood/fileexplore reading sources... [ 86%] using-ood/interactiveapps reading sources... [ 90%] using-ood/introduction reading sources... [ 95%] welcome/gettinghelp reading sources... [100%] welcome/welcome looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 4%] classroom/class_use writing output... [ 9%] get_started/connect writing output... [ 13%] get_started/get_access writing output... [ 18%] hardware/hardware_overview writing output... [ 22%] hardware/partitions writing output... [ 27%] index writing output... [ 31%] software/matlab writing output... [ 36%] software/modules writing output... [ 40%] software/software writing output... [ 45%] storage/discovery_storage writing output... [ 50%] storage/general_storage writing output... [ 54%] using-discovery/globus writing output... [ 59%] using-discovery/sbatch writing output... [ 63%] using-discovery/srun writing output... [ 68%] using-discovery/transferringdata writing output... [ 72%] using-discovery/usingslurm writing output... [ 77%] using-discovery/workingwithgpu writing output... [ 81%] using-ood/fileexplore writing output... [ 86%] using-ood/interactiveapps writing output... [ 90%] using-ood/introduction writing output... [ 95%] welcome/gettinghelp writing output... [100%] welcome/welcome generating indices... genindex writing additional pages... search copying images... [ 33%] images/moduleload.jpg copying images... [ 66%] images/srun_example.jpg copying images... [100%] images/discovery.png copying static files... WARNING: html_static_path entry '/home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/checkouts/latest/docs/source/_static' does not exist done copying extra files... done dumping search index in English (code: en) ... done dumping object inventory... done build succeeded, 1 warning. The HTML pages are in _build/html. Updating searchtools for Read the Docs search... [rtd-command-info] start-time: 2021-02-23T19:48:27.362401Z, end-time: 2021-02-23T19:48:28.857610Z, duration: 1, exit-code: 0 python -m sphinx -T -b readthedocssinglehtmllocalmedia -d _build/doctrees-readthedocssinglehtmllocalmedia -D language=en . _build/localmedia Running Sphinx v1.8.5 loading translations [en]... done making output directory... building [mo]: targets for 0 po files that are out of date building [readthedocssinglehtmllocalmedia]: all documents updating environment: 22 added, 0 changed, 0 removed reading sources... [ 4%] classroom/class_use reading sources... [ 9%] get_started/connect reading sources... [ 13%] get_started/get_access reading sources... [ 18%] hardware/hardware_overview reading sources... [ 22%] hardware/partitions reading sources... [ 27%] index reading sources... [ 31%] software/matlab reading sources... [ 36%] software/modules reading sources... [ 40%] software/software reading sources... [ 45%] storage/discovery_storage reading sources... [ 50%] storage/general_storage reading sources... [ 54%] using-discovery/globus reading sources... [ 59%] using-discovery/sbatch reading sources... [ 63%] using-discovery/srun reading sources... [ 68%] using-discovery/transferringdata reading sources... [ 72%] using-discovery/usingslurm reading sources... [ 77%] using-discovery/workingwithgpu reading sources... [ 81%] using-ood/fileexplore reading sources... [ 86%] using-ood/interactiveapps reading sources... [ 90%] using-ood/introduction reading sources... [ 95%] welcome/gettinghelp reading sources... [100%] welcome/welcome looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done assembling single document... welcome/welcome welcome/gettinghelp get_started/get_access get_started/connect hardware/hardware_overview hardware/partitions software/modules software/software software/matlab using-discovery/usingslurm using-discovery/sbatch using-discovery/srun using-discovery/workingwithgpu using-discovery/transferringdata using-discovery/globus storage/discovery_storage storage/general_storage using-ood/introduction using-ood/fileexplore using-ood/interactiveapps classroom/class_use writing... done writing additional files... copying images... [ 33%] images/discovery.png copying images... [ 66%] images/moduleload.jpg copying images... [100%] images/srun_example.jpg copying static files... WARNING: html_static_path entry '/home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/checkouts/latest/docs/source/_static' does not exist done copying extra files... done dumping object inventory... done build succeeded, 1 warning. The HTML page is in _build/localmedia. Updating searchtools for Read the Docs search... [rtd-command-info] start-time: 2021-02-23T19:48:29.046742Z, end-time: 2021-02-23T19:48:30.473489Z, duration: 1, exit-code: 0 python -m sphinx -b latex -D language=en -d _build/doctrees . _build/latex Running Sphinx v1.8.5 loading translations [en]... done making output directory... building [mo]: targets for 0 po files that are out of date building [latex]: all documents updating environment: 22 added, 0 changed, 0 removed reading sources... [ 4%] classroom/class_use reading sources... [ 9%] get_started/connect reading sources... [ 13%] get_started/get_access reading sources... [ 18%] hardware/hardware_overview reading sources... [ 22%] hardware/partitions reading sources... [ 27%] index reading sources... [ 31%] software/matlab reading sources... [ 36%] software/modules reading sources... [ 40%] software/software reading sources... [ 45%] storage/discovery_storage reading sources... [ 50%] storage/general_storage reading sources... [ 54%] using-discovery/globus reading sources... [ 59%] using-discovery/sbatch reading sources... [ 63%] using-discovery/srun reading sources... [ 68%] using-discovery/transferringdata reading sources... [ 72%] using-discovery/usingslurm reading sources... [ 77%] using-discovery/workingwithgpu reading sources... [ 81%] using-ood/fileexplore reading sources... [ 86%] using-ood/interactiveapps reading sources... [ 90%] using-ood/introduction reading sources... [ 95%] welcome/gettinghelp reading sources... [100%] welcome/welcome looking for now-outdated files... none found pickling environment... done checking consistency... done processing NortheasternUniversityResearchComputing.tex...index welcome/welcome welcome/gettinghelp get_started/get_access get_started/connect hardware/hardware_overview hardware/partitions software/modules software/software software/matlab using-discovery/usingslurm using-discovery/sbatch using-discovery/srun using-discovery/workingwithgpu using-discovery/transferringdata using-discovery/globus storage/discovery_storage storage/general_storage using-ood/introduction using-ood/fileexplore using-ood/interactiveapps classroom/class_use resolving references... writing... done copying images... [ 33%] images/discovery.png copying images... [ 66%] images/moduleload.jpg copying images... [100%] images/srun_example.jpg copying TeX support files... done build succeeded. The LaTeX files are in _build/latex. Run 'make' in that directory to run these through (pdf)latex (use `make latexpdf' here to do that automatically). WARNING: Missing searchtools: /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/checkouts/latest/docs/source/_build/latex/_static/searchtools.js [rtd-command-info] start-time: 2021-02-23T19:48:32.941116Z, end-time: 2021-02-23T19:48:33.001613Z, duration: 0, exit-code: 0 cat latexmkrc $latex = 'latex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $pdflatex = 'pdflatex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $lualatex = 'lualatex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $xelatex = 'xelatex --no-pdf ' . $ENV{'LATEXOPTS'} . ' %O %S'; $makeindex = 'makeindex -s python.ist %O -o %D %S'; add_cus_dep( "glo", "gls", 0, "makeglo" ); sub makeglo { return system( "makeindex -s gglo.ist -o '$_[0].gls' '$_[0].glo'" ); } [rtd-command-info] start-time: 2021-02-23T19:48:33.106175Z, end-time: 2021-02-23T19:48:56.088726Z, duration: 22, exit-code: 0 latexmk -r latexmkrc -pdf -f -dvi- -ps- -jobname=northeastern-university-rc-public-documentation -interaction=nonstopmode Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 1, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 2, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 3, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 4, chunk 1. Subroutine makeglo redefined at (eval 11) line 7, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 1, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 2, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 3, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 4, chunk 1. Latexmk: This is Latexmk, John Collins, 1 January 2015, version: 4.41. File::Glob::glob() will disappear in perl 5.30. Use File::Glob::bsd_glob() instead. at /usr/bin/latexmk line 7482. Rule 'pdflatex': Rules & subrules not known to be previously run: pdflatex Rule 'pdflatex': The following rules & subrules became out-of-date: 'pdflatex' ------------ Run number 1 of rule 'pdflatex' ------------ Latexmk: applying rule 'pdflatex'... ------------ Running 'pdflatex -interaction=nonstopmode -recorder --jobname="northeastern-university-rc-public-documentation" "NortheasternUniversityResearchComputing.tex"' ------------ This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./NortheasternUniversityResearchComputing.tex LaTeX2e <2017-04-15> Babel <3.18> and hyphenation patterns for 84 language(s) loaded. (./sphinxmanual.cls Document Class: sphinxmanual 2018/12/22 v1.8.3 Document class (Sphinx manual) (/usr/share/texlive/texmf-dist/tex/latex/base/report.cls Document Class: report 2014/09/29 v1.4h Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo))) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/ot1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/omsenc.dfu))) (/usr/share/texlive/texmf-dist/tex/latex/cmap/cmap.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def)<>) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty For additional information on amsmath, use the `?' option. (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty)) (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty (/usr/share/texlive/texmf-dist/tex/generic/babel/switch.def) (/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.def (/usr/share/texlive/texmf-dist/tex/generic/babel/txtbabel.def)))) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) (/usr/share/texlive/texmf-dist/tex/latex/fncychap/fncychap.sty) (./sphinx.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.def (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.dfu))) (/usr/share/texlive/texmf-dist/tex/latex/titlesec/titlesec.sty) (/usr/share/texlive/texmf-dist/tex/latex/tabulary/tabulary.sty (/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty)) (/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty) (/usr/share/texlive/texmf-dist/tex/latex/varwidth/varwidth.sty) (./sphinxmulticell.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty) (/usr/share/texlive/texmf-dist/tex/latex/framed/framed.sty) (/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty Style option: `fancyvrb' v2.7a, with DG/SPQR fixes, and firstline=lastline fix <2008/02/07> (tvz)) (./footnotehyper-sphinx.sty) (/usr/share/texlive/texmf-dist/tex/latex/float/float.sty) (/usr/share/texlive/texmf-dist/tex/latex/wrapfig/wrapfig.sty) (/usr/share/texlive/texmf-dist/tex/latex/parskip/parskip.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/upquote/upquote.sty) (/usr/share/texlive/texmf-dist/tex/latex/capt-of/capt-of.sty) (/usr/share/texlive/texmf-dist/tex/latex/needspace/needspace.sty) (/usr/share/texlive/texmf-dist/tex/latex/carlisle/remreset.sty) (./sphinxhighlight.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/kvsetkeys.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/infwarerr.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/etexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifluatex.sty))))) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifpdf.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifvtex.sty) (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty)) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/hypcap.sty) Writing index file northeastern-university-rc-public-documentation.idx (./northeastern-university-rc-public-documentation.aux) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1ptm.fd) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd)<><><><> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}] [2] [1] [2] Chapter 1. (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) [1] [2 <./discovery.p ng>] Chapter 2. (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [3] [4] Chapter 3. [5] [6] Chapter 4. LaTeX Warning: Hyper reference `get_started/connect:using-x11' on page 7 undefi ned on input line 247. LaTeX Warning: Hyper reference `get_started/connect:using-x11' on page 7 undefi ned on input line 253. [7] [8] Underfull \hbox (badness 10000) in paragraph at lines 361--362 []\T1/ptm/m/n/10 Type \T1/pcr/m/n/10 ssh-copy-id -i ~/.ssh/id_rsa.pub @login.discovery.neu. LaTeX Warning: Hyper reference `using-discovery/srun:using-srun' on page 9 unde fined on input line 392. LaTeX Warning: Hyper reference `using-discovery/sbatch:using-sbatch' on page 9 undefined on input line 392. LaTeX Warning: Hyper reference `software/modules:using-module' on page 9 undefi ned on input line 394. LaTeX Warning: Hyper reference `software/software:installing-software' on page 9 undefined on input line 394. LaTeX Warning: Hyper reference `hardware/hardware_overview:hardware-overview' o n page 9 undefined on input line 396. LaTeX Warning: Hyper reference `hardware/partitions:partition-names' on page 9 undefined on input line 396. [9] [10] Chapter 5. Underfull \hbox (badness 10000) in paragraph at lines 426--429 []|\T1/phv/m/n/10 Number Underfull \hbox (badness 10000) in paragraph at lines 439--442 []|\T1/phv/m/n/10 Number [11] LaTeX Warning: Hyper reference `using-discovery/workingwithgpu:working-gpus' on page 12 undefined on input line 663. LaTeX Warning: Hyper reference `hardware/partitions:partition-names' on page 12 undefined on input line 665. LaTeX Warning: Hyper reference `using-discovery/usingslurm:using-slurm' on page 12 undefined on input line 675. [12] Chapter 6. Underfull \hbox (badness 10000) in paragraph at lines 720--721 \T1/phv/m/n/10 ap- Underfull \hbox (badness 10000) in paragraph at lines 722--723 []|\T1/phv/m/n/10 Time Overfull \hbox (3.84886pt too wide) in paragraph at lines 722--723 \T1/phv/m/n/10 fault/max)| Underfull \hbox (badness 10000) in paragraph at lines 724--725 []|\T1/phv/m/n/10 Running Underfull \hbox (badness 10000) in paragraph at lines 728--729 []|\T1/phv/m/n/10 Core Underfull \hbox (badness 10000) in paragraph at lines 730--731 []|\T1/phv/m/n/10 RAM Underfull \hbox (badness 10000) in paragraph at lines 739--740 []|\T1/ptm/m/n/10 20 min- Underfull \hbox (badness 10000) in paragraph at lines 739--740 \T1/ptm/m/n/10 utes/20 Underfull \hbox (badness 10000) in paragraph at lines 756--757 []|\T1/ptm/m/n/10 30 min- Underfull \hbox (badness 10000) in paragraph at lines 756--757 \T1/ptm/m/n/10 utes/60 Underfull \hbox (badness 10000) in paragraph at lines 773--774 []|\T1/ptm/m/n/10 4 Underfull \hbox (badness 10000) in paragraph at lines 773--774 \T1/ptm/m/n/10 hours/24 Underfull \hbox (badness 10000) in paragraph at lines 783--785 []|\T1/ptm/m/n/10 Best for se- Underfull \hbox (badness 10000) in paragraph at lines 783--785 \T1/ptm/m/n/10 rial or small Underfull \hbox (badness 10000) in paragraph at lines 783--785 \T1/ptm/m/n/10 par-al-lel jobs Underfull \hbox (badness 10000) in paragraph at lines 783--785 \T1/ptm/m/n/10 (\T1/pcr/m/n/10 --nodes=2 Underfull \hbox (badness 10000) in paragraph at lines 790--791 []|\T1/ptm/m/n/10 1 day/5 Underfull \hbox (badness 10000) in paragraph at lines 794--795 []|\T1/ptm/m/n/10 1000 per Underfull \hbox (badness 10000) in paragraph at lines 794--795 \T1/ptm/m/n/10 user/5000 per Underfull \hbox (badness 10000) in paragraph at lines 800--802 []|\T1/ptm/m/n/10 Primarily for Underfull \hbox (badness 10000) in paragraph at lines 800--802 \T1/ptm/m/n/10 se-rial or par- Underfull \hbox (badness 6284) in paragraph at lines 800--802 \T1/ptm/m/n/10 al-lel jobs that Underfull \hbox (badness 10000) in paragraph at lines 800--802 \T1/ptm/m/n/10 more than 24 Underfull \hbox (badness 10000) in paragraph at lines 800--802 \T1/ptm/m/n/10 check-pointed Underfull \hbox (badness 10000) in paragraph at lines 800--802 \T1/ptm/m/n/10 to use this Underfull \hbox (badness 10000) in paragraph at lines 811--812 []|\T1/ptm/m/n/10 1000 per Underfull \hbox (badness 10000) in paragraph at lines 811--812 \T1/ptm/m/n/10 user/5000 per Underfull \hbox (badness 10000) in paragraph at lines 817--819 []|\T1/ptm/m/n/10 Primarily for Underfull \hbox (badness 10000) in paragraph at lines 817--819 \T1/ptm/m/n/10 jobs that can Underfull \hbox (badness 10000) in paragraph at lines 817--819 \T1/ptm/m/n/10 ef-fi-ciently use Underfull \hbox (badness 10000) in paragraph at lines 817--819 \T1/ptm/m/n/10 more than 2 Underfull \hbox (badness 10000) in paragraph at lines 817--819 \T1/ptm/m/n/10 to demon-strate Underfull \hbox (badness 10000) in paragraph at lines 817--819 \T1/ptm/m/n/10 is op-ti-mized Underfull \hbox (badness 10000) in paragraph at lines 817--819 \T1/ptm/m/n/10 more than 2 [13] Underfull \hbox (badness 10000) in paragraph at lines 832--833 []|\T1/phv/m/n/10 Requires Underfull \hbox (badness 10000) in paragraph at lines 832--833 \T1/phv/m/n/10 ap- Underfull \hbox (badness 10000) in paragraph at lines 834--835 []|\T1/phv/m/n/10 Time Overfull \hbox (0.78119pt too wide) in paragraph at lines 834--835 \T1/phv/m/n/10 fault/max)| Underfull \hbox (badness 10000) in paragraph at lines 836--837 []|\T1/phv/m/n/10 Running Overfull \hbox (2.20114pt too wide) in paragraph at lines 838--839 []|\T1/phv/m/n/10 Submitted Underfull \hbox (badness 10000) in paragraph at lines 878--880 []|\T1/ptm/m/n/10 For jobs that Underfull \hbox (badness 10000) in paragraph at lines 878--880 \T1/ptm/m/n/10 re-quire more Underfull \hbox (badness 10000) in paragraph at lines 878--880 \T1/ptm/m/n/10 than one GPU [14] LaTeX Warning: Hyper reference `using-discovery/usingslurm:using-slurm' on page 15 undefined on input line 904. [15] [16] Chapter 7. Underfull \hbox (badness 10000) in paragraph at lines 956--957 []|\T1/pcr/m/n/10 module Underfull \hbox (badness 10000) in paragraph at lines 961--962 []|\T1/pcr/m/n/10 module Underfull \hbox (badness 10000) in paragraph at lines 966--967 []|\T1/pcr/m/n/10 module Underfull \hbox (badness 10000) in paragraph at lines 966--967 \T1/pcr/m/n/10 show Underfull \hbox (badness 10000) in paragraph at lines 966--967 \T1/pcr/m/n/10 ] Chapter 8. LaTeX Warning: Hyper reference `software/modules:using-module' on page 19 undef ined on input line 1018. [19] Underfull \hbox (badness 10000) in paragraph at lines 1108--1109 []\T1/ptm/m/n/10 To delete a conda en-vi-ron-ment and all of its re-lated pack- ages, type \T1/pcr/m/n/10 conda remove -n [20] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pcr.fd) [21] [22] Chapter 9. [23] [24] [25] [26] Chapter 10. LaTeX Warning: Hyper reference `using-discovery/srun:using-srun' on page 27 und efined on input line 1438. LaTeX Warning: Hyper reference `using-discovery/sbatch:using-sbatch' on page 27 undefined on input line 1438. LaTeX Warning: Hyper reference `hardware/hardware_overview:hardware-overview' o n page 27 undefined on input line 1452. Underfull \hbox (badness 10000) in paragraph at lines 1460--1461 []|\T1/phv/m/n/10 Slurm Com- Underfull \hbox (badness 10000) in paragraph at lines 1465--1466 []|\T1/pcr/m/n/10 sinfo Underfull \hbox (badness 10000) in paragraph at lines 1470--1471 []|\T1/pcr/m/n/10 smap [27] Underfull \hbox (badness 10000) in paragraph at lines 1491--1492 []|\T1/phv/m/n/10 Slurm Com- LaTeX Warning: Hyper reference `using-discovery/srun:using-srun' on page 28 und efined on input line 1498. Underfull \hbox (badness 10000) in paragraph at lines 1501--1502 []|\T1/pcr/m/n/10 sbatch Overfull \hbox (6.17415pt too wide) in paragraph at lines 1501--1502 \T1/pcr/m/n/10 ] LaTeX Warning: Hyper reference `using-discovery/workingwithgpu:working-gpus' on page 36 undefined on input line 1760. [36] Chapter 13. Underfull \hbox (badness 10000) in paragraph at lines 1835--1836 []|\T1/ptm/m/n/10 AMD EPYC Underfull \hbox (badness 10000) in paragraph at lines 1844--1845 []|\T1/ptm/m/n/10 Intel Gold Underfull \hbox (badness 10000) in paragraph at lines 1853--1854 []|\T1/ptm/m/n/10 Intel Gold LaTeX Warning: Hyper reference `hardware/partitions:partition-names' on page 37 undefined on input line 1864. Underfull \hbox (badness 10000) in paragraph at lines 1874--1875 \T1/phv/m/n/10 Ap- Underfull \hbox (badness 10000) in paragraph at lines 1876--1877 []|\T1/phv/m/n/10 Time Overfull \hbox (3.84886pt too wide) in paragraph at lines 1876--1877 \T1/phv/m/n/10 fault/Max)| Underfull \hbox (badness 10000) in paragraph at lines 1878--1879 []|\T1/phv/m/n/10 Running Overfull \hbox (5.26881pt too wide) in paragraph at lines 1880--1881 []|\T1/phv/m/n/10 Submitted Underfull \hbox (badness 10000) in paragraph at lines 1882--1883 []|\T1/phv/m/n/10 Core Underfull \hbox (badness 10000) in paragraph at lines 1884--1885 []|\T1/phv/m/n/10 RAM Underfull \hbox (badness 10000) in paragraph at lines 1888--1890 []|\T1/phv/m/n/10 GPU Underfull \hbox (badness 10000) in paragraph at lines 1914--1915 []|\T1/ptm/m/n/10 4 Underfull \hbox (badness 10000) in paragraph at lines 1914--1915 \T1/ptm/m/n/10 hours/24 [37] Underfull \hbox (badness 10000) in paragraph at lines 1945--1946 []\T1/pcr/m/n/10 srun --partition=gpu --nodes=1 --pty --export=All --gres=gpu:1 --mem=1G [38] [39] [40] Chapter 14. LaTeX Warning: Hyper reference `using-discovery/globus:using-globus' on page 41 undefined on input line 2045. LaTeX Warning: Hyper reference `using-ood/fileexplore:file-explorer' on page 41 undefined on input line 2079. [41] [42] Chapter 15. [43] [44] [45] [46] Chapter 16. [47] LaTeX Warning: Hyper reference `storage/general_storage:general-storage' on pag e 48 undefined on input line 2360. [48] Chapter 17. LaTeX Warning: Hyper reference `storage/discovery_storage:discovery-storage' on page 49 undefined on input line 2378. [49] [50] Chapter 18. LaTeX Warning: Hyper reference `get_started/get_access:id1' on page 51 undefine d on input line 2471. LaTeX Warning: Hyper reference `using-ood/interactiveapps:accessing-ood' on pag e 51 undefined on input line 2484. LaTeX Warning: Hyper reference `using-ood/fileexplore:file-explorer' on page 51 undefined on input line 2487. [51] [52] Chapter 19. LaTeX Warning: Hyper reference `using-ood/interactiveapps:accessing-ood' on pag e 53 undefined on input line 2535. [53] [54] Chapter 20. LaTeX Warning: Hyper reference `get_started/connect:using-x11' on page 55 undef ined on input line 2549. [55] LaTeX Warning: Hyper reference `software/software:creating-python' on page 56 u ndefined on input line 2625. [56] [57] [58] Chapter 21. [59] LaTeX Warning: Hyper reference `software/modules:using-module' on page 60 undef ined on input line 2731. LaTeX Warning: Hyper reference `using-ood/introduction:using-ood' on page 60 un defined on input line 2732. LaTeX Warning: Hyper reference `software/software:installing-software' on page 60 undefined on input line 2770. [60] LaTeX Warning: Hyper reference `get_started/get_access:instructor-access' on pa ge 61 undefined on input line 2796. No file northeastern-university-rc-public-documentation.ind. [61] (./northeastern-university-rc-public-documentation.aux) Package rerunfilecheck Warning: File `northeastern-university-rc-public-documen tation.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on northeastern-university-rc-public-documentation.pdf (65 pages , 25447909 bytes). Transcript written on northeastern-university-rc-public-documentation.log. Latexmk: Index file 'northeastern-university-rc-public-documentation.idx' was written Latexmk: Missing input file: 'northeastern-university-rc-public-documentation.ind' from line 'No file northeastern-university-rc-public-documentation.ind.' Latexmk: References changed. Latexmk: References changed. Latexmk: Log file says output to 'northeastern-university-rc-public-documentation.pdf' Latexmk: Log file says output to 'northeastern-university-rc-public-documentation.pdf' Rule 'makeindex northeastern-university-rc-public-documentation.idx': File changes, etc: Non-existent destination files: 'northeastern-university-rc-public-documentation.ind' ------------ Run number 1 of rule 'makeindex northeastern-university-rc-public-documentation.idx' ------------ ------------ Running 'makeindex -s python.ist -o "northeastern-university-rc-public-documentation.ind" "northeastern-university-rc-public-documentation.idx"' ------------ Latexmk: applying rule 'makeindex northeastern-university-rc-public-documentation.idx'... This is makeindex, version 2.15 [TeX Live 2017] (kpathsea + Thai support). Scanning style file ./python.ist.......done (7 attributes redefined, 0 ignored). Scanning input file northeastern-university-rc-public-documentation.idx...done (0 entries accepted, 0 rejected). Nothing written in northeastern-university-rc-public-documentation.ind. Transcript written in northeastern-university-rc-public-documentation.ilg. Rule 'pdflatex': File changes, etc: Changed files, or newly in use since previous run(s): 'northeastern-university-rc-public-documentation.aux' 'northeastern-university-rc-public-documentation.ind' ------------ Run number 2 of rule 'pdflatex' ------------ ------------ Running 'pdflatex -interaction=nonstopmode -recorder --jobname="northeastern-university-rc-public-documentation" "NortheasternUniversityResearchComputing.tex"' ------------ Latexmk: applying rule 'pdflatex'... This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./NortheasternUniversityResearchComputing.tex LaTeX2e <2017-04-15> Babel <3.18> and hyphenation patterns for 84 language(s) loaded. (./sphinxmanual.cls Document Class: sphinxmanual 2018/12/22 v1.8.3 Document class (Sphinx manual) (/usr/share/texlive/texmf-dist/tex/latex/base/report.cls Document Class: report 2014/09/29 v1.4h Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo))) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/ot1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/omsenc.dfu))) (/usr/share/texlive/texmf-dist/tex/latex/cmap/cmap.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def)<>) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty For additional information on amsmath, use the `?' option. (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty)) (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty (/usr/share/texlive/texmf-dist/tex/generic/babel/switch.def) (/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.def (/usr/share/texlive/texmf-dist/tex/generic/babel/txtbabel.def)))) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) (/usr/share/texlive/texmf-dist/tex/latex/fncychap/fncychap.sty) (./sphinx.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.def (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.dfu))) (/usr/share/texlive/texmf-dist/tex/latex/titlesec/titlesec.sty) (/usr/share/texlive/texmf-dist/tex/latex/tabulary/tabulary.sty (/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty)) (/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty) (/usr/share/texlive/texmf-dist/tex/latex/varwidth/varwidth.sty) (./sphinxmulticell.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty) (/usr/share/texlive/texmf-dist/tex/latex/framed/framed.sty) (/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty Style option: `fancyvrb' v2.7a, with DG/SPQR fixes, and firstline=lastline fix <2008/02/07> (tvz)) (./footnotehyper-sphinx.sty) (/usr/share/texlive/texmf-dist/tex/latex/float/float.sty) (/usr/share/texlive/texmf-dist/tex/latex/wrapfig/wrapfig.sty) (/usr/share/texlive/texmf-dist/tex/latex/parskip/parskip.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/upquote/upquote.sty) (/usr/share/texlive/texmf-dist/tex/latex/capt-of/capt-of.sty) (/usr/share/texlive/texmf-dist/tex/latex/needspace/needspace.sty) (/usr/share/texlive/texmf-dist/tex/latex/carlisle/remreset.sty) (./sphinxhighlight.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/kvsetkeys.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/infwarerr.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/etexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifluatex.sty))))) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifpdf.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifvtex.sty) (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty)) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/hypcap.sty) Writing index file northeastern-university-rc-public-documentation.idx (./northeastern-university-rc-public-documentation.aux) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1ptm.fd) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) (./northeastern-university-rc-public-documentation.out) (./northeastern-university-rc-public-documentation.out) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd)<><><><> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}] [2] (./northeastern-university-rc-public-documentation.toc (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) [1]) [2] Chapter 1. [1] [2 <./discovery.png>] Chapter 2. (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [3] [4] Chapter 3. [5] [6] Chapter 4. [7] [8] Underfull \hbox (badness 10000) in paragraph at lines 361--362 []\T1/ptm/m/n/10 Type \T1/pcr/m/n/10 ssh-copy-id -i ~/.ssh/id_rsa.pub @login.discovery.neu. [9] [10] Chapter 5. Underfull \hbox (badness 10000) in paragraph at lines 426--429 []|\T1/phv/m/n/10 Number Underfull \hbox (badness 10000) in paragraph at lines 439--442 []|\T1/phv/m/n/10 Number [11] [12] Chapter 6. Underfull \hbox (badness 10000) in paragraph at lines 720--721 \T1/phv/m/n/10 ap- Underfull \hbox (badness 10000) in paragraph at lines 722--723 []|\T1/phv/m/n/10 Time Overfull \hbox (3.84886pt too wide) in paragraph at lines 722--723 \T1/phv/m/n/10 fault/max)| Underfull \hbox (badness 10000) in paragraph at lines 724--725 []|\T1/phv/m/n/10 Running Underfull \hbox (badness 10000) in paragraph at lines 728--729 []|\T1/phv/m/n/10 Core Underfull \hbox (badness 10000) in paragraph at lines 730--731 []|\T1/phv/m/n/10 RAM Underfull \hbox (badness 10000) in paragraph at lines 739--740 []|\T1/ptm/m/n/10 20 min- Underfull \hbox (badness 10000) in paragraph at lines 739--740 \T1/ptm/m/n/10 utes/20 Underfull \hbox (badness 10000) in paragraph at lines 756--757 []|\T1/ptm/m/n/10 30 min- Underfull \hbox (badness 10000) in paragraph at lines 756--757 \T1/ptm/m/n/10 utes/60 Underfull \hbox (badness 10000) in paragraph at lines 773--774 []|\T1/ptm/m/n/10 4 Underfull \hbox (badness 10000) in paragraph at lines 773--774 \T1/ptm/m/n/10 hours/24 Underfull \hbox (badness 10000) in paragraph at lines 783--785 []|\T1/ptm/m/n/10 Best for se- Underfull \hbox (badness 10000) in paragraph at lines 783--785 \T1/ptm/m/n/10 rial or small Underfull \hbox (badness 10000) in paragraph at lines 783--785 \T1/ptm/m/n/10 par-al-lel jobs Underfull \hbox (badness 10000) in paragraph at lines 783--785 \T1/ptm/m/n/10 (\T1/pcr/m/n/10 --nodes=2 Underfull \hbox (badness 10000) in paragraph at lines 790--791 []|\T1/ptm/m/n/10 1 day/5 Underfull \hbox (badness 10000) in paragraph at lines 794--795 []|\T1/ptm/m/n/10 1000 per Underfull \hbox (badness 10000) in paragraph at lines 794--795 \T1/ptm/m/n/10 user/5000 per Underfull \hbox (badness 10000) in paragraph at lines 800--802 []|\T1/ptm/m/n/10 Primarily for Underfull \hbox (badness 10000) in paragraph at lines 800--802 \T1/ptm/m/n/10 se-rial or par- Underfull \hbox (badness 6284) in paragraph at lines 800--802 \T1/ptm/m/n/10 al-lel jobs that Underfull \hbox (badness 10000) in paragraph at lines 800--802 \T1/ptm/m/n/10 more than 24 Underfull \hbox (badness 10000) in paragraph at lines 800--802 \T1/ptm/m/n/10 check-pointed Underfull \hbox (badness 10000) in paragraph at lines 800--802 \T1/ptm/m/n/10 to use this Underfull \hbox (badness 10000) in paragraph at lines 811--812 []|\T1/ptm/m/n/10 1000 per Underfull \hbox (badness 10000) in paragraph at lines 811--812 \T1/ptm/m/n/10 user/5000 per Underfull \hbox (badness 10000) in paragraph at lines 817--819 []|\T1/ptm/m/n/10 Primarily for Underfull \hbox (badness 10000) in paragraph at lines 817--819 \T1/ptm/m/n/10 jobs that can Underfull \hbox (badness 10000) in paragraph at lines 817--819 \T1/ptm/m/n/10 ef-fi-ciently use Underfull \hbox (badness 10000) in paragraph at lines 817--819 \T1/ptm/m/n/10 more than 2 Underfull \hbox (badness 10000) in paragraph at lines 817--819 \T1/ptm/m/n/10 to demon-strate Underfull \hbox (badness 10000) in paragraph at lines 817--819 \T1/ptm/m/n/10 is op-ti-mized Underfull \hbox (badness 10000) in paragraph at lines 817--819 \T1/ptm/m/n/10 more than 2 [13] Underfull \hbox (badness 10000) in paragraph at lines 832--833 []|\T1/phv/m/n/10 Requires Underfull \hbox (badness 10000) in paragraph at lines 832--833 \T1/phv/m/n/10 ap- Underfull \hbox (badness 10000) in paragraph at lines 834--835 []|\T1/phv/m/n/10 Time Overfull \hbox (0.78119pt too wide) in paragraph at lines 834--835 \T1/phv/m/n/10 fault/max)| Underfull \hbox (badness 10000) in paragraph at lines 836--837 []|\T1/phv/m/n/10 Running Overfull \hbox (2.20114pt too wide) in paragraph at lines 838--839 []|\T1/phv/m/n/10 Submitted Underfull \hbox (badness 10000) in paragraph at lines 878--880 []|\T1/ptm/m/n/10 For jobs that Underfull \hbox (badness 10000) in paragraph at lines 878--880 \T1/ptm/m/n/10 re-quire more Underfull \hbox (badness 10000) in paragraph at lines 878--880 \T1/ptm/m/n/10 than one GPU [14] [15] [16] Chapter 7. Underfull \hbox (badness 10000) in paragraph at lines 956--957 []|\T1/pcr/m/n/10 module Underfull \hbox (badness 10000) in paragraph at lines 961--962 []|\T1/pcr/m/n/10 module Underfull \hbox (badness 10000) in paragraph at lines 966--967 []|\T1/pcr/m/n/10 module Underfull \hbox (badness 10000) in paragraph at lines 966--967 \T1/pcr/m/n/10 show Underfull \hbox (badness 10000) in paragraph at lines 966--967 \T1/pcr/m/n/10 ] Chapter 8. [19] Underfull \hbox (badness 10000) in paragraph at lines 1108--1109 []\T1/ptm/m/n/10 To delete a conda en-vi-ron-ment and all of its re-lated pack- ages, type \T1/pcr/m/n/10 conda remove -n [20] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pcr.fd) [21] [22] Chapter 9. [23] [24] [25] [26] Chapter 10. Underfull \hbox (badness 10000) in paragraph at lines 1460--1461 []|\T1/phv/m/n/10 Slurm Com- Underfull \hbox (badness 10000) in paragraph at lines 1465--1466 []|\T1/pcr/m/n/10 sinfo Underfull \hbox (badness 10000) in paragraph at lines 1470--1471 []|\T1/pcr/m/n/10 smap [27] Underfull \hbox (badness 10000) in paragraph at lines 1491--1492 []|\T1/phv/m/n/10 Slurm Com- Underfull \hbox (badness 10000) in paragraph at lines 1501--1502 []|\T1/pcr/m/n/10 sbatch Overfull \hbox (6.17415pt too wide) in paragraph at lines 1501--1502 \T1/pcr/m/n/10 ] [36] Chapter 13. Underfull \hbox (badness 10000) in paragraph at lines 1835--1836 []|\T1/ptm/m/n/10 AMD EPYC Underfull \hbox (badness 10000) in paragraph at lines 1844--1845 []|\T1/ptm/m/n/10 Intel Gold Underfull \hbox (badness 10000) in paragraph at lines 1853--1854 []|\T1/ptm/m/n/10 Intel Gold Underfull \hbox (badness 10000) in paragraph at lines 1874--1875 \T1/phv/m/n/10 Ap- Underfull \hbox (badness 10000) in paragraph at lines 1876--1877 []|\T1/phv/m/n/10 Time Overfull \hbox (3.84886pt too wide) in paragraph at lines 1876--1877 \T1/phv/m/n/10 fault/Max)| Underfull \hbox (badness 10000) in paragraph at lines 1878--1879 []|\T1/phv/m/n/10 Running Overfull \hbox (5.26881pt too wide) in paragraph at lines 1880--1881 []|\T1/phv/m/n/10 Submitted Underfull \hbox (badness 10000) in paragraph at lines 1882--1883 []|\T1/phv/m/n/10 Core Underfull \hbox (badness 10000) in paragraph at lines 1884--1885 []|\T1/phv/m/n/10 RAM Underfull \hbox (badness 10000) in paragraph at lines 1888--1890 []|\T1/phv/m/n/10 GPU Underfull \hbox (badness 10000) in paragraph at lines 1914--1915 []|\T1/ptm/m/n/10 4 Underfull \hbox (badness 10000) in paragraph at lines 1914--1915 \T1/ptm/m/n/10 hours/24 [37] Underfull \hbox (badness 10000) in paragraph at lines 1945--1946 []\T1/pcr/m/n/10 srun --partition=gpu --nodes=1 --pty --export=All --gres=gpu:1 --mem=1G [38] [39] [40] Chapter 14. [41] [42] Chapter 15. [43] [44] [45] [46] Chapter 16. [47] [48] Chapter 17. [49] [50] Chapter 18. [51] [52] Chapter 19. [53] [54] Chapter 20. [55] [56] [57] [58] Chapter 21. [59] [60] (./northeastern-university-rc-public-documentation.ind) [61] (./northeastern-university-rc-public-documentation.aux) ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on northeastern-university-rc-public-documentation.pdf (65 pages , 25460079 bytes). Transcript written on northeastern-university-rc-public-documentation.log. Latexmk: Index file 'northeastern-university-rc-public-documentation.idx' was written Latexmk: Log file says output to 'northeastern-university-rc-public-documentation.pdf' Latexmk: Log file says output to 'northeastern-university-rc-public-documentation.pdf' Rule 'pdflatex': File changes, etc: Changed files, or newly in use since previous run(s): 'northeastern-university-rc-public-documentation.out' 'northeastern-university-rc-public-documentation.toc' ------------ Run number 3 of rule 'pdflatex' ------------ ------------ Running 'pdflatex -interaction=nonstopmode -recorder --jobname="northeastern-university-rc-public-documentation" "NortheasternUniversityResearchComputing.tex"' ------------ Latexmk: applying rule 'pdflatex'... This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./NortheasternUniversityResearchComputing.tex LaTeX2e <2017-04-15> Babel <3.18> and hyphenation patterns for 84 language(s) loaded. (./sphinxmanual.cls Document Class: sphinxmanual 2018/12/22 v1.8.3 Document class (Sphinx manual) (/usr/share/texlive/texmf-dist/tex/latex/base/report.cls Document Class: report 2014/09/29 v1.4h Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo))) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/ot1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/omsenc.dfu))) (/usr/share/texlive/texmf-dist/tex/latex/cmap/cmap.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def)<>) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty For additional information on amsmath, use the `?' option. (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty)) (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty (/usr/share/texlive/texmf-dist/tex/generic/babel/switch.def) (/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.def (/usr/share/texlive/texmf-dist/tex/generic/babel/txtbabel.def)))) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) (/usr/share/texlive/texmf-dist/tex/latex/fncychap/fncychap.sty) (./sphinx.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.def (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.dfu))) (/usr/share/texlive/texmf-dist/tex/latex/titlesec/titlesec.sty) (/usr/share/texlive/texmf-dist/tex/latex/tabulary/tabulary.sty (/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty)) (/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty) (/usr/share/texlive/texmf-dist/tex/latex/varwidth/varwidth.sty) (./sphinxmulticell.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty) (/usr/share/texlive/texmf-dist/tex/latex/framed/framed.sty) (/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty Style option: `fancyvrb' v2.7a, with DG/SPQR fixes, and firstline=lastline fix <2008/02/07> (tvz)) (./footnotehyper-sphinx.sty) (/usr/share/texlive/texmf-dist/tex/latex/float/float.sty) (/usr/share/texlive/texmf-dist/tex/latex/wrapfig/wrapfig.sty) (/usr/share/texlive/texmf-dist/tex/latex/parskip/parskip.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/upquote/upquote.sty) (/usr/share/texlive/texmf-dist/tex/latex/capt-of/capt-of.sty) (/usr/share/texlive/texmf-dist/tex/latex/needspace/needspace.sty) (/usr/share/texlive/texmf-dist/tex/latex/carlisle/remreset.sty) (./sphinxhighlight.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/kvsetkeys.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/infwarerr.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/etexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifluatex.sty))))) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifpdf.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifvtex.sty) (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty)) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/hypcap.sty) Writing index file northeastern-university-rc-public-documentation.idx (./northeastern-university-rc-public-documentation.aux) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1ptm.fd) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) (./northeastern-university-rc-public-documentation.out) (./northeastern-university-rc-public-documentation.out) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd)<><><><> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}] [2] (./northeastern-university-rc-public-documentation.toc (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) [1]) [2] Chapter 1. [1] [2 <./discovery.png>] Chapter 2. (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [3] [4] Chapter 3. [5] [6] Chapter 4. [7] [8] Underfull \hbox (badness 10000) in paragraph at lines 361--362 []\T1/ptm/m/n/10 Type \T1/pcr/m/n/10 ssh-copy-id -i ~/.ssh/id_rsa.pub @login.discovery.neu. [9] [10] Chapter 5. Underfull \hbox (badness 10000) in paragraph at lines 426--429 []|\T1/phv/m/n/10 Number Underfull \hbox (badness 10000) in paragraph at lines 439--442 []|\T1/phv/m/n/10 Number [11] [12] Chapter 6. Underfull \hbox (badness 10000) in paragraph at lines 720--721 \T1/phv/m/n/10 ap- Underfull \hbox (badness 10000) in paragraph at lines 722--723 []|\T1/phv/m/n/10 Time Overfull \hbox (3.84886pt too wide) in paragraph at lines 722--723 \T1/phv/m/n/10 fault/max)| Underfull \hbox (badness 10000) in paragraph at lines 724--725 []|\T1/phv/m/n/10 Running Underfull \hbox (badness 10000) in paragraph at lines 728--729 []|\T1/phv/m/n/10 Core Underfull \hbox (badness 10000) in paragraph at lines 730--731 []|\T1/phv/m/n/10 RAM Underfull \hbox (badness 10000) in paragraph at lines 739--740 []|\T1/ptm/m/n/10 20 min- Underfull \hbox (badness 10000) in paragraph at lines 739--740 \T1/ptm/m/n/10 utes/20 Underfull \hbox (badness 10000) in paragraph at lines 756--757 []|\T1/ptm/m/n/10 30 min- Underfull \hbox (badness 10000) in paragraph at lines 756--757 \T1/ptm/m/n/10 utes/60 Underfull \hbox (badness 10000) in paragraph at lines 773--774 []|\T1/ptm/m/n/10 4 Underfull \hbox (badness 10000) in paragraph at lines 773--774 \T1/ptm/m/n/10 hours/24 Underfull \hbox (badness 10000) in paragraph at lines 783--785 []|\T1/ptm/m/n/10 Best for se- Underfull \hbox (badness 10000) in paragraph at lines 783--785 \T1/ptm/m/n/10 rial or small Underfull \hbox (badness 10000) in paragraph at lines 783--785 \T1/ptm/m/n/10 par-al-lel jobs Underfull \hbox (badness 10000) in paragraph at lines 783--785 \T1/ptm/m/n/10 (\T1/pcr/m/n/10 --nodes=2 Underfull \hbox (badness 10000) in paragraph at lines 790--791 []|\T1/ptm/m/n/10 1 day/5 Underfull \hbox (badness 10000) in paragraph at lines 794--795 []|\T1/ptm/m/n/10 1000 per Underfull \hbox (badness 10000) in paragraph at lines 794--795 \T1/ptm/m/n/10 user/5000 per Underfull \hbox (badness 10000) in paragraph at lines 800--802 []|\T1/ptm/m/n/10 Primarily for Underfull \hbox (badness 10000) in paragraph at lines 800--802 \T1/ptm/m/n/10 se-rial or par- Underfull \hbox (badness 6284) in paragraph at lines 800--802 \T1/ptm/m/n/10 al-lel jobs that Underfull \hbox (badness 10000) in paragraph at lines 800--802 \T1/ptm/m/n/10 more than 24 Underfull \hbox (badness 10000) in paragraph at lines 800--802 \T1/ptm/m/n/10 check-pointed Underfull \hbox (badness 10000) in paragraph at lines 800--802 \T1/ptm/m/n/10 to use this Underfull \hbox (badness 10000) in paragraph at lines 811--812 []|\T1/ptm/m/n/10 1000 per Underfull \hbox (badness 10000) in paragraph at lines 811--812 \T1/ptm/m/n/10 user/5000 per Underfull \hbox (badness 10000) in paragraph at lines 817--819 []|\T1/ptm/m/n/10 Primarily for Underfull \hbox (badness 10000) in paragraph at lines 817--819 \T1/ptm/m/n/10 jobs that can Underfull \hbox (badness 10000) in paragraph at lines 817--819 \T1/ptm/m/n/10 ef-fi-ciently use Underfull \hbox (badness 10000) in paragraph at lines 817--819 \T1/ptm/m/n/10 more than 2 Underfull \hbox (badness 10000) in paragraph at lines 817--819 \T1/ptm/m/n/10 to demon-strate Underfull \hbox (badness 10000) in paragraph at lines 817--819 \T1/ptm/m/n/10 is op-ti-mized Underfull \hbox (badness 10000) in paragraph at lines 817--819 \T1/ptm/m/n/10 more than 2 [13] Underfull \hbox (badness 10000) in paragraph at lines 832--833 []|\T1/phv/m/n/10 Requires Underfull \hbox (badness 10000) in paragraph at lines 832--833 \T1/phv/m/n/10 ap- Underfull \hbox (badness 10000) in paragraph at lines 834--835 []|\T1/phv/m/n/10 Time Overfull \hbox (0.78119pt too wide) in paragraph at lines 834--835 \T1/phv/m/n/10 fault/max)| Underfull \hbox (badness 10000) in paragraph at lines 836--837 []|\T1/phv/m/n/10 Running Overfull \hbox (2.20114pt too wide) in paragraph at lines 838--839 []|\T1/phv/m/n/10 Submitted Underfull \hbox (badness 10000) in paragraph at lines 878--880 []|\T1/ptm/m/n/10 For jobs that Underfull \hbox (badness 10000) in paragraph at lines 878--880 \T1/ptm/m/n/10 re-quire more Underfull \hbox (badness 10000) in paragraph at lines 878--880 \T1/ptm/m/n/10 than one GPU [14] [15] [16] Chapter 7. Underfull \hbox (badness 10000) in paragraph at lines 956--957 []|\T1/pcr/m/n/10 module Underfull \hbox (badness 10000) in paragraph at lines 961--962 []|\T1/pcr/m/n/10 module Underfull \hbox (badness 10000) in paragraph at lines 966--967 []|\T1/pcr/m/n/10 module Underfull \hbox (badness 10000) in paragraph at lines 966--967 \T1/pcr/m/n/10 show Underfull \hbox (badness 10000) in paragraph at lines 966--967 \T1/pcr/m/n/10 ] Chapter 8. [19] Underfull \hbox (badness 10000) in paragraph at lines 1108--1109 []\T1/ptm/m/n/10 To delete a conda en-vi-ron-ment and all of its re-lated pack- ages, type \T1/pcr/m/n/10 conda remove -n [20] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pcr.fd) [21] [22] Chapter 9. [23] [24] [25] [26] Chapter 10. Underfull \hbox (badness 10000) in paragraph at lines 1460--1461 []|\T1/phv/m/n/10 Slurm Com- Underfull \hbox (badness 10000) in paragraph at lines 1465--1466 []|\T1/pcr/m/n/10 sinfo Underfull \hbox (badness 10000) in paragraph at lines 1470--1471 []|\T1/pcr/m/n/10 smap [27] Underfull \hbox (badness 10000) in paragraph at lines 1491--1492 []|\T1/phv/m/n/10 Slurm Com- Underfull \hbox (badness 10000) in paragraph at lines 1501--1502 []|\T1/pcr/m/n/10 sbatch Overfull \hbox (6.17415pt too wide) in paragraph at lines 1501--1502 \T1/pcr/m/n/10 ] [36] Chapter 13. Underfull \hbox (badness 10000) in paragraph at lines 1835--1836 []|\T1/ptm/m/n/10 AMD EPYC Underfull \hbox (badness 10000) in paragraph at lines 1844--1845 []|\T1/ptm/m/n/10 Intel Gold Underfull \hbox (badness 10000) in paragraph at lines 1853--1854 []|\T1/ptm/m/n/10 Intel Gold Underfull \hbox (badness 10000) in paragraph at lines 1874--1875 \T1/phv/m/n/10 Ap- Underfull \hbox (badness 10000) in paragraph at lines 1876--1877 []|\T1/phv/m/n/10 Time Overfull \hbox (3.84886pt too wide) in paragraph at lines 1876--1877 \T1/phv/m/n/10 fault/Max)| Underfull \hbox (badness 10000) in paragraph at lines 1878--1879 []|\T1/phv/m/n/10 Running Overfull \hbox (5.26881pt too wide) in paragraph at lines 1880--1881 []|\T1/phv/m/n/10 Submitted Underfull \hbox (badness 10000) in paragraph at lines 1882--1883 []|\T1/phv/m/n/10 Core Underfull \hbox (badness 10000) in paragraph at lines 1884--1885 []|\T1/phv/m/n/10 RAM Underfull \hbox (badness 10000) in paragraph at lines 1888--1890 []|\T1/phv/m/n/10 GPU Underfull \hbox (badness 10000) in paragraph at lines 1914--1915 []|\T1/ptm/m/n/10 4 Underfull \hbox (badness 10000) in paragraph at lines 1914--1915 \T1/ptm/m/n/10 hours/24 [37] Underfull \hbox (badness 10000) in paragraph at lines 1945--1946 []\T1/pcr/m/n/10 srun --partition=gpu --nodes=1 --pty --export=All --gres=gpu:1 --mem=1G [38] [39] [40] Chapter 14. [41] [42] Chapter 15. [43] [44] [45] [46] Chapter 16. [47] [48] Chapter 17. [49] [50] Chapter 18. [51] [52] Chapter 19. [53] [54] Chapter 20. [55] [56] [57] [58] Chapter 21. [59] [60] (./northeastern-university-rc-public-documentation.ind) [61] (./northeastern-university-rc-public-documentation.aux) ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on northeastern-university-rc-public-documentation.pdf (65 pages , 25460079 bytes). Transcript written on northeastern-university-rc-public-documentation.log. Latexmk: Index file 'northeastern-university-rc-public-documentation.idx' was written Latexmk: Log file says output to 'northeastern-university-rc-public-documentation.pdf' Latexmk: Log file says output to 'northeastern-university-rc-public-documentation.pdf' Latexmk: All targets (northeastern-university-rc-public-documentation.pdf) are up-to-date [rtd-command-info] start-time: 2021-02-23T19:48:56.212324Z, end-time: 2021-02-23T19:48:56.273081Z, duration: 0, exit-code: 0 mv -f /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/checkouts/latest/docs/source/_build/latex/northeastern-university-rc-public-documentation.pdf /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/artifacts/latest/sphinx_pdf/northeastern-university-rc-public-documentation.pdf [rtd-command-info] start-time: 2021-02-23T19:48:56.376311Z, end-time: 2021-02-23T19:48:58.545792Z, duration: 2, exit-code: 0 python -m sphinx -T -b epub -d _build/doctrees-epub -D language=en . _build/epub Running Sphinx v1.8.5 loading translations [en]... done making output directory... building [mo]: targets for 0 po files that are out of date building [epub]: targets for 22 source files that are out of date updating environment: 22 added, 0 changed, 0 removed reading sources... [ 4%] classroom/class_use reading sources... [ 9%] get_started/connect reading sources... [ 13%] get_started/get_access reading sources... [ 18%] hardware/hardware_overview reading sources... [ 22%] hardware/partitions reading sources... [ 27%] index reading sources... [ 31%] software/matlab reading sources... [ 36%] software/modules reading sources... [ 40%] software/software reading sources... [ 45%] storage/discovery_storage reading sources... [ 50%] storage/general_storage reading sources... [ 54%] using-discovery/globus reading sources... [ 59%] using-discovery/sbatch reading sources... [ 63%] using-discovery/srun reading sources... [ 68%] using-discovery/transferringdata reading sources... [ 72%] using-discovery/usingslurm reading sources... [ 77%] using-discovery/workingwithgpu reading sources... [ 81%] using-ood/fileexplore reading sources... [ 86%] using-ood/interactiveapps reading sources... [ 90%] using-ood/introduction reading sources... [ 95%] welcome/gettinghelp reading sources... [100%] welcome/welcome looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 4%] classroom/class_use writing output... [ 9%] get_started/connect writing output... [ 13%] get_started/get_access writing output... [ 18%] hardware/hardware_overview writing output... [ 22%] hardware/partitions writing output... [ 27%] index writing output... [ 31%] software/matlab writing output... [ 36%] software/modules writing output... [ 40%] software/software writing output... [ 45%] storage/discovery_storage writing output... [ 50%] storage/general_storage writing output... [ 54%] using-discovery/globus writing output... [ 59%] using-discovery/sbatch writing output... [ 63%] using-discovery/srun writing output... [ 68%] using-discovery/transferringdata writing output... [ 72%] using-discovery/usingslurm writing output... [ 77%] using-discovery/workingwithgpu writing output... [ 81%] using-ood/fileexplore writing output... [ 86%] using-ood/interactiveapps writing output... [ 90%] using-ood/introduction writing output... [ 95%] welcome/gettinghelp writing output... [100%] welcome/welcome generating indices... genindex writing additional pages... copying images... [ 33%] images/moduleload.jpg copying images... [ 66%] images/srun_example.jpg copying images... [100%] images/discovery.png copying static files... WARNING: html_static_path entry '/home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/checkouts/latest/docs/source/_static' does not exist done copying extra files... done WARNING: conf value "version" should not be empty for EPUB3 writing mimetype file... writing META-INF/container.xml file... writing content.opf file... writing nav.xhtml file... writing toc.ncx file... writing NortheasternUniversityResearchComputing.epub file... build succeeded, 2 warnings. The ePub file is in _build/epub. Updating searchtools for Read the Docs search... [rtd-command-info] start-time: 2021-02-23T19:48:58.653923Z, end-time: 2021-02-23T19:48:58.706795Z, duration: 0, exit-code: 0 mv -f /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/checkouts/latest/docs/source/_build/epub/NortheasternUniversityResearchComputing.epub /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/artifacts/latest/sphinx_epub/northeastern-university-rc-public-documentation.epub