Read the Docs build information Build id: 566196 Project: institute-for-disease-modeling-emodpy-malaria Version: latest Commit: d8d5884159e0546a23a114fbe715afd2065c6869 Date: 2021-02-19T00:05:38.779911Z State: finished Success: True [rtd-command-info] start-time: 2021-02-19T00:05:40.250456Z, end-time: 2021-02-19T00:05:42.846035Z, duration: 2, exit-code: 0 git clone --no-single-branch --depth 50 git@github.com:InstituteforDiseaseModeling/emodpy-malaria.git . Cloning into '.'... Warning: Permanently added 'github.com,192.30.255.113' (RSA) to the list of known hosts. [rtd-command-info] start-time: 2021-02-19T00:05:43.144098Z, end-time: 2021-02-19T00:05:43.356016Z, duration: 0, exit-code: 0 git checkout --force origin/main Note: checking out 'origin/main'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at d8d5884 Bump version: 0.0.28 → 0.0.29 [rtd-command-info] start-time: 2021-02-19T00:05:43.474867Z, end-time: 2021-02-19T00:05:43.530064Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2021-02-19T00:05:44.604299Z, end-time: 2021-02-19T00:05:49.381626Z, duration: 4, exit-code: 0 python3.7 -mvirtualenv Using base prefix '/home/docs/.pyenv/versions/3.7.9' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2021-02-19T00:05:49.551939Z, end-time: 2021-02-19T00:05:51.860721Z, duration: 2, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip setuptools==41.0.1 Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/simple Requirement already satisfied: pip in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages (21.0.1) WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLError(1, '[SSL: UNKNOWN_PROTOCOL] unknown protocol (_ssl.c:1091)'))': /artifactory/api/pypi/idm-pypi-production/simple/pip/ WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLError(1, '[SSL: UNKNOWN_PROTOCOL] unknown protocol (_ssl.c:1091)'))': /artifactory/api/pypi/idm-pypi-production/simple/pip/ Collecting setuptools==41.0.1 Downloading setuptools-41.0.1-py2.py3-none-any.whl (575 kB) Installing collected packages: setuptools Attempting uninstall: setuptools Found existing installation: setuptools 53.0.0 Uninstalling setuptools-53.0.0: Successfully uninstalled setuptools-53.0.0 Successfully installed setuptools-41.0.1 Could not fetch URL https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/simple/pip/: There was a problem confirming the ssl certificate: HTTPSConnectionPool(host='packages.idmod.org', port=443): Max retries exceeded with url: /artifactory/api/pypi/idm-pypi-production/simple/pip/ (Caused by SSLError(SSLError(1, '[SSL: UNKNOWN_PROTOCOL] unknown protocol (_ssl.c:1091)'))) - skipping [rtd-command-info] start-time: 2021-02-19T00:05:52.096682Z, end-time: 2021-02-19T00:06:01.119947Z, duration: 9, exit-code: 0 python -m pip install --upgrade --no-cache-dir docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 six commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<2.2 Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/simple WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLError(1, '[SSL: UNKNOWN_PROTOCOL] unknown protocol (_ssl.c:1091)'))': /artifactory/api/pypi/idm-pypi-production/simple/docutils/ Collecting docutils==0.14 Downloading docutils-0.14-py3-none-any.whl (543 kB) Collecting mock==1.0.1 Downloading mock-1.0.1.zip (861 kB) Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting six Downloading six-1.15.0-py2.py3-none-any.whl (10 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.5-py2.py3-none-any.whl (3.1 MB) Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) Collecting readthedocs-sphinx-ext<2.2 Downloading readthedocs_sphinx_ext-2.1.3-py2.py3-none-any.whl (11 kB) Collecting future Downloading future-0.18.2.tar.gz (829 kB) Collecting requests Downloading requests-2.25.1-py2.py3-none-any.whl (61 kB) Collecting Jinja2>=2.9 Downloading Jinja2-2.11.3-py2.py3-none-any.whl (125 kB) Collecting imagesize Downloading imagesize-1.2.0-py2.py3-none-any.whl (4.8 kB) Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages (from sphinx<2) (41.0.1) Collecting sphinxcontrib-websupport Downloading sphinxcontrib_websupport-1.2.4-py2.py3-none-any.whl (39 kB) Collecting packaging Downloading packaging-20.9-py2.py3-none-any.whl (40 kB) Collecting Pygments>=2.0 Downloading Pygments-2.8.0-py3-none-any.whl (983 kB) Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.1.0-py2.py3-none-any.whl (93 kB) Collecting babel!=2.0,>=1.3 Downloading Babel-2.9.0-py2.py3-none-any.whl (8.8 MB) Collecting pytz>=2015.7 Downloading pytz-2021.1-py2.py3-none-any.whl (510 kB) Collecting MarkupSafe>=0.23 Downloading MarkupSafe-1.1.1-cp37-cp37m-manylinux2010_x86_64.whl (33 kB) Collecting idna<3,>=2.5 Downloading idna-2.10-py2.py3-none-any.whl (58 kB) Collecting chardet<5,>=3.0.2 Downloading chardet-4.0.0-py2.py3-none-any.whl (178 kB) Collecting certifi>=2017.4.17 Downloading certifi-2020.12.5-py2.py3-none-any.whl (147 kB) Collecting urllib3<1.27,>=1.21.1 Downloading urllib3-1.26.3-py2.py3-none-any.whl (137 kB) Collecting pyparsing>=2.0.2 Downloading pyparsing-2.4.7-py2.py3-none-any.whl (67 kB) Collecting sphinxcontrib-serializinghtml Downloading sphinxcontrib_serializinghtml-1.1.4-py2.py3-none-any.whl (89 kB) Building wheels for collected packages: mock, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23755 sha256=92bb05ce70b3466d62a98fd2269e5020a243df9565b06b198010b6635bca9991 Stored in directory: /tmp/pip-ephem-wheel-cache-vlnpr9ds/wheels/7a/94/b1/0fdc5339a5bd487a5cc15421ec200d9ba3e2aa7190e4a727f1 Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491059 sha256=2b6b254e9bc6a168fbdde7ca5601b87791716ab4f24ec74b308fc1dcf504402d Stored in directory: /tmp/pip-ephem-wheel-cache-vlnpr9ds/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0 Successfully built mock future Installing collected packages: urllib3, sphinxcontrib-serializinghtml, pytz, pyparsing, MarkupSafe, idna, chardet, certifi, sphinxcontrib-websupport, snowballstemmer, six, requests, Pygments, packaging, Jinja2, imagesize, future, docutils, babel, alabaster, sphinx, commonmark, sphinx-rtd-theme, recommonmark, readthedocs-sphinx-ext, pillow, mock Successfully installed Jinja2-2.11.3 MarkupSafe-1.1.1 Pygments-2.8.0 alabaster-0.7.12 babel-2.9.0 certifi-2020.12.5 chardet-4.0.0 commonmark-0.8.1 docutils-0.14 future-0.18.2 idna-2.10 imagesize-1.2.0 mock-1.0.1 packaging-20.9 pillow-5.4.1 pyparsing-2.4.7 pytz-2021.1 readthedocs-sphinx-ext-2.1.3 recommonmark-0.5.0 requests-2.25.1 six-1.15.0 snowballstemmer-2.1.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-serializinghtml-1.1.4 sphinxcontrib-websupport-1.2.4 urllib3-1.26.3 [rtd-command-info] start-time: 2021-02-19T00:06:01.298931Z, end-time: 2021-02-19T00:06:22.919884Z, duration: 21, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r requirements.txt Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/simple WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLError(1, '[SSL: UNKNOWN_PROTOCOL] unknown protocol (_ssl.c:1091)'))': /artifactory/api/pypi/idm-pypi-production/simple/emodpy/ Collecting emodpy~=1.10.0 Downloading https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/emodpy/1.10.1/emodpy-1.10.1-py3-none-any.whl (111 kB) Collecting idmtools-platform-comps~=1.6.0 Downloading https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/idmtools-platform-comps/1.6.2/idmtools_platform_comps-1.6.2-py3-none-any.whl (149 kB) Collecting emod-api~=1.7.0 Downloading https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/emod-api/1.7.4/emod_api-1.7.4-py3-none-any.whl (100 kB) Collecting keyring Downloading keyring-22.0.1-py3-none-any.whl (32 kB) Collecting idmtools~=1.6.0 Downloading https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/idmtools/1.6.2/idmtools-1.6.2-py3-none-any.whl (136 kB) Collecting astunparse Downloading astunparse-1.6.3-py2.py3-none-any.whl (12 kB) Collecting click~=7.1 Downloading click-7.1.2-py2.py3-none-any.whl (82 kB) Collecting matplotlib Downloading matplotlib-3.3.4-cp37-cp37m-manylinux1_x86_64.whl (11.5 MB) Collecting idmtools-models~=1.6.0 Downloading https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/idmtools-models/1.6.2/idmtools_models-1.6.2-py3-none-any.whl (22 kB) Collecting bs4 Downloading bs4-0.0.1.tar.gz (1.1 kB) Collecting astor Downloading astor-0.8.1-py2.py3-none-any.whl (27 kB) Collecting scipy Downloading scipy-1.6.1-cp37-cp37m-manylinux1_x86_64.whl (27.4 MB) Collecting shapely Downloading Shapely-1.7.1-cp37-cp37m-manylinux1_x86_64.whl (1.0 MB) Collecting pyyaml Downloading PyYAML-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (636 kB) Collecting numpy==1.19.3 Downloading numpy-1.19.3-cp37-cp37m-manylinux2010_x86_64.whl (14.9 MB) Collecting pandas Downloading pandas-1.2.2-cp37-cp37m-manylinux1_x86_64.whl (9.9 MB) Collecting geopy Downloading geopy-2.1.0-py3-none-any.whl (112 kB) Collecting lz4 Downloading lz4-3.1.3-cp37-cp37m-manylinux2010_x86_64.whl (1.8 MB) Collecting pyproj Downloading pyproj-3.0.0.post1-cp37-cp37m-manylinux2010_x86_64.whl (6.4 MB) Collecting pluggy~=0.13.1 Downloading pluggy-0.13.1-py2.py3-none-any.whl (18 kB) Collecting more-itertools~=8.6.0 Downloading more_itertools-8.6.0-py3-none-any.whl (45 kB) Collecting pandas Downloading pandas-1.1.5-cp37-cp37m-manylinux1_x86_64.whl (9.5 MB) Collecting coloredlogs~=14.0 Downloading coloredlogs-14.3-py2.py3-none-any.whl (44 kB) Collecting humanfriendly~=8.2 Downloading humanfriendly-8.2-py2.py3-none-any.whl (86 kB) Collecting pyyaml Downloading PyYAML-5.3.1.tar.gz (269 kB) Collecting tabulate~=0.8.7 Downloading tabulate-0.8.8-py3-none-any.whl (25 kB) Collecting backoff<1.11,>=1.10.0 Downloading backoff-1.10.0-py2.py3-none-any.whl (31 kB) Requirement already satisfied: packaging<21.0,>=20.4 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages (from idmtools~=1.6.0->emodpy~=1.10.0->-r requirements.txt (line 1)) (20.9) Collecting tqdm<5,>=4.52.0 Downloading tqdm-4.57.0-py2.py3-none-any.whl (72 kB) Collecting diskcache==5.1.0 Downloading diskcache-5.1.0-py3-none-any.whl (44 kB) Collecting pipreqs<0.5,>=0.4.10 Downloading pipreqs-0.4.10-py2.py3-none-any.whl (25 kB) Requirement already satisfied: jinja2~=2.11.2 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages (from idmtools-models~=1.6.0->emodpy~=1.10.0->-r requirements.txt (line 1)) (2.11.3) Collecting pyCOMPS~=2.4.1 Downloading https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/pyCOMPS/2.4.1/pyCOMPS-2.4.1-py2.py3-none-any.whl (55 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Collecting yarg Downloading yarg-0.1.9-py2.py3-none-any.whl (19 kB) Collecting importlib-metadata>=0.12 Downloading importlib_metadata-3.4.0-py3-none-any.whl (10 kB) Collecting typing-extensions>=3.6.4 Downloading typing_extensions-3.7.4.3-py3-none-any.whl (22 kB) Collecting zipp>=0.5 Downloading zipp-3.4.0-py3-none-any.whl (5.2 kB) Collecting xdg>=4.0.1 Downloading xdg-5.0.1-py3-none-any.whl (4.5 kB) Requirement already satisfied: requests>=2.11.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages (from pyCOMPS~=2.4.1->idmtools-platform-comps~=1.6.0->emodpy~=1.10.0->-r requirements.txt (line 1)) (2.25.1) Requirement already satisfied: future>=0.16.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages (from pyCOMPS~=2.4.1->idmtools-platform-comps~=1.6.0->emodpy~=1.10.0->-r requirements.txt (line 1)) (0.18.2) Requirement already satisfied: six>=1.5 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages (from python-dateutil>=2.7.3->pandas->emod-api~=1.7.0->emodpy~=1.10.0->-r requirements.txt (line 1)) (1.15.0) Requirement already satisfied: certifi>=2017.4.17 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages (from requests>=2.11.1->pyCOMPS~=2.4.1->idmtools-platform-comps~=1.6.0->emodpy~=1.10.0->-r requirements.txt (line 1)) (2020.12.5) Requirement already satisfied: idna<3,>=2.5 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages (from requests>=2.11.1->pyCOMPS~=2.4.1->idmtools-platform-comps~=1.6.0->emodpy~=1.10.0->-r requirements.txt (line 1)) (2.10) Requirement already satisfied: chardet<5,>=3.0.2 in 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Collecting geographiclib<2,>=1.49 Downloading geographiclib-1.50-py3-none-any.whl (38 kB) Collecting jeepney>=0.4.2 Downloading jeepney-0.6.0-py3-none-any.whl (45 kB) Collecting SecretStorage>=3.2 Downloading SecretStorage-3.3.1-py3-none-any.whl (15 kB) Collecting cryptography>=2.0 Downloading cryptography-3.4.6-cp36-abi3-manylinux2014_x86_64.whl (3.2 MB) Collecting cffi>=1.12 Downloading cffi-1.14.5-cp37-cp37m-manylinux1_x86_64.whl (402 kB) Collecting pycparser Downloading pycparser-2.20-py2.py3-none-any.whl (112 kB) Collecting cycler>=0.10 Downloading cycler-0.10.0-py2.py3-none-any.whl (6.5 kB) Collecting kiwisolver>=1.0.1 Downloading kiwisolver-1.3.1-cp37-cp37m-manylinux1_x86_64.whl (1.1 MB) Collecting pillow>=6.2.0 Downloading Pillow-8.1.0-cp37-cp37m-manylinux1_x86_64.whl (2.2 MB) Building wheels for collected packages: pyyaml, bs4, docopt Building wheel for pyyaml (setup.py): started Building wheel for pyyaml (setup.py): finished with status 'done' Created wheel for pyyaml: filename=PyYAML-5.3.1-cp37-cp37m-linux_x86_64.whl size=44620 sha256=1c080b21f0a7c77ffc8542dba51ba50fc02d294ca558b88a3bb36d3ff2f7ac4a Stored in directory: /tmp/pip-ephem-wheel-cache-tq015jok/wheels/5e/03/1e/e1e954795d6f35dfc7b637fe2277bff021303bd9570ecea653 Building wheel for bs4 (setup.py): started Building wheel for bs4 (setup.py): finished with status 'done' Created wheel for bs4: filename=bs4-0.0.1-py3-none-any.whl size=1273 sha256=8ce8b1cb0500755b0320544f3b6a04d81cb63e7e1d46abba48b17bf6beb23143 Stored in directory: /tmp/pip-ephem-wheel-cache-tq015jok/wheels/0a/9e/ba/20e5bbc1afef3a491f0b3bb74d508f99403aabe76eda2167ca Building wheel for docopt (setup.py): started Building wheel for docopt (setup.py): finished with status 'done' Created wheel for docopt: filename=docopt-0.6.2-py2.py3-none-any.whl size=13705 sha256=665d60918a0072a03798c38110fb8332a15d090d762b88f2e191c5cc59231f0e Stored in directory: /tmp/pip-ephem-wheel-cache-tq015jok/wheels/72/b0/3f/1d95f96ff986c7dfffe46ce2be4062f38ebd04b506c77c81b9 Successfully built pyyaml bs4 docopt Installing collected packages: zipp, typing-extensions, pycparser, yarg, python-dateutil, numpy, importlib-metadata, humanfriendly, docopt, cffi, xdg, tqdm, tabulate, soupsieve, pyyaml, pluggy, pipreqs, pillow, pandas, more-itertools, kiwisolver, jeepney, geographiclib, diskcache, cycler, cryptography, coloredlogs, backoff, shapely, SecretStorage, scipy, pyproj, pyCOMPS, matplotlib, lz4, idmtools, geopy, beautifulsoup4, keyring, idmtools-platform-comps, idmtools-models, emod-api, click, bs4, astunparse, astor, emodpy Attempting uninstall: pillow Found existing installation: Pillow 5.4.1 Uninstalling Pillow-5.4.1: Successfully uninstalled Pillow-5.4.1 Successfully installed SecretStorage-3.3.1 astor-0.8.1 astunparse-1.6.3 backoff-1.10.0 beautifulsoup4-4.9.3 bs4-0.0.1 cffi-1.14.5 click-7.1.2 coloredlogs-14.3 cryptography-3.4.6 cycler-0.10.0 diskcache-5.1.0 docopt-0.6.2 emod-api-1.7.4 emodpy-1.10.1 geographiclib-1.50 geopy-2.1.0 humanfriendly-8.2 idmtools-1.6.2 idmtools-models-1.6.2 idmtools-platform-comps-1.6.2 importlib-metadata-3.4.0 jeepney-0.6.0 keyring-22.0.1 kiwisolver-1.3.1 lz4-3.1.3 matplotlib-3.3.4 more-itertools-8.6.0 numpy-1.19.3 pandas-1.1.5 pillow-8.1.0 pipreqs-0.4.10 pluggy-0.13.1 pyCOMPS-2.4.1 pycparser-2.20 pyproj-3.0.0.post1 python-dateutil-2.8.1 pyyaml-5.3.1 scipy-1.6.1 shapely-1.7.1 soupsieve-2.2 tabulate-0.8.8 tqdm-4.57.0 typing-extensions-3.7.4.3 xdg-5.0.1 yarg-0.1.9 zipp-3.4.0 [rtd-command-info] start-time: 2021-02-19T00:06:23.037687Z, end-time: 2021-02-19T00:06:29.123276Z, duration: 6, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r docs/requirements.txt Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/simple WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLError(1, '[SSL: UNKNOWN_PROTOCOL] unknown protocol (_ssl.c:1091)'))': /artifactory/api/pypi/idm-pypi-production/simple/sphinx-rtd-theme/ WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLError(1, '[SSL: UNKNOWN_PROTOCOL] unknown protocol (_ssl.c:1091)'))': /artifactory/api/pypi/idm-pypi-production/simple/sphinx-rtd-theme/ Collecting sphinx-rtd-theme~=0.5.0 Downloading sphinx_rtd_theme-0.5.1-py2.py3-none-any.whl (2.8 MB) Collecting sphinxcontrib-napoleon~=0.7 Downloading sphinxcontrib_napoleon-0.7-py2.py3-none-any.whl (17 kB) Collecting sphinx~=3.2.1 Downloading Sphinx-3.2.1-py3-none-any.whl (2.9 MB) Collecting plantweb~=1.2.1 Downloading plantweb-1.2.1-py3-none-any.whl (20 kB) Collecting sphinxcontrib-programoutput~=0.16 Downloading sphinxcontrib_programoutput-0.16-py2.py3-none-any.whl (21 kB) Collecting py-make Downloading py_make-0.1.1-py2.py3-none-any.whl (9.4 kB) Collecting PyGithub~=1.51 Downloading PyGithub-1.54.1-py3-none-any.whl (289 kB) Collecting pygit2~=1.2.1 Downloading pygit2-1.2.1-cp37-cp37m-manylinux2010_x86_64.whl (3.0 MB) Requirement already satisfied: requests in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages (from plantweb~=1.2.1->-r docs/requirements.txt (line 4)) (2.25.1) Requirement already satisfied: six in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages (from plantweb~=1.2.1->-r docs/requirements.txt (line 4)) (1.15.0) Requirement already satisfied: docutils in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages (from plantweb~=1.2.1->-r docs/requirements.txt (line 4)) (0.14) Requirement already satisfied: cffi>=1.4.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages (from pygit2~=1.2.1->-r docs/requirements.txt (line 8)) (1.14.5) Collecting cached-property Downloading cached_property-1.5.2-py2.py3-none-any.whl (7.6 kB) Collecting pyjwt<2.0 Downloading PyJWT-1.7.1-py2.py3-none-any.whl (18 kB) Collecting deprecated Downloading Deprecated-1.2.11-py2.py3-none-any.whl (9.1 kB) Collecting sphinxcontrib-devhelp Downloading sphinxcontrib_devhelp-1.0.2-py2.py3-none-any.whl (84 kB) Requirement already satisfied: imagesize in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages (from sphinx~=3.2.1->-r docs/requirements.txt (line 3)) (1.2.0) Collecting sphinxcontrib-applehelp Downloading sphinxcontrib_applehelp-1.0.2-py2.py3-none-any.whl (121 kB) Collecting sphinxcontrib-jsmath Downloading sphinxcontrib_jsmath-1.0.1-py2.py3-none-any.whl (5.1 kB) 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(2.9.0) Requirement already satisfied: Pygments>=2.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages (from sphinx~=3.2.1->-r docs/requirements.txt (line 3)) (2.8.0) Collecting sphinxcontrib-qthelp Downloading sphinxcontrib_qthelp-1.0.3-py2.py3-none-any.whl (90 kB) Requirement already satisfied: Jinja2>=2.3 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages (from sphinx~=3.2.1->-r docs/requirements.txt (line 3)) (2.11.3) Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages (from sphinx~=3.2.1->-r docs/requirements.txt (line 3)) (41.0.1) Requirement already satisfied: snowballstemmer>=1.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages (from sphinx~=3.2.1->-r docs/requirements.txt (line 3)) (2.1.0) Collecting sphinxcontrib-htmlhelp Downloading sphinxcontrib_htmlhelp-1.0.3-py2.py3-none-any.whl (96 kB) Collecting pockets>=0.3 Downloading pockets-0.9.1-py2.py3-none-any.whl (26 kB) Requirement already satisfied: pytz>=2015.7 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages (from babel>=1.3->sphinx~=3.2.1->-r docs/requirements.txt (line 3)) (2021.1) Requirement already satisfied: pycparser in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages (from cffi>=1.4.0->pygit2~=1.2.1->-r docs/requirements.txt (line 8)) (2.20) Requirement already satisfied: MarkupSafe>=0.23 in 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Requirement already satisfied: urllib3<1.27,>=1.21.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages (from requests->plantweb~=1.2.1->-r docs/requirements.txt (line 4)) (1.26.3) Requirement already satisfied: docopt>=0.6.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages (from py-make->-r docs/requirements.txt (line 6)) (0.6.2) Collecting wrapt<2,>=1.10 Downloading wrapt-1.12.1.tar.gz (27 kB) Requirement already satisfied: pyparsing>=2.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages (from packaging->sphinx~=3.2.1->-r docs/requirements.txt (line 3)) (2.4.7) Building wheels for collected packages: wrapt Building wheel for wrapt (setup.py): started Building wheel for wrapt (setup.py): finished with status 'done' Created wheel for wrapt: filename=wrapt-1.12.1-cp37-cp37m-linux_x86_64.whl size=71021 sha256=10359dde87d0809305bc7ba19a9a457e707f7149f34d964e6eb09f8024528104 Stored in directory: /tmp/pip-ephem-wheel-cache-vajs5yjg/wheels/62/76/4c/aa25851149f3f6d9785f6c869387ad82b3fd37582fa8147ac6 Successfully built wrapt Installing collected packages: wrapt, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, sphinx, pyjwt, pockets, deprecated, cached-property, sphinxcontrib-programoutput, sphinxcontrib-napoleon, sphinx-rtd-theme, PyGithub, pygit2, py-make, plantweb Attempting uninstall: sphinx Found existing installation: Sphinx 1.8.5 Uninstalling Sphinx-1.8.5: Successfully uninstalled Sphinx-1.8.5 Attempting uninstall: sphinx-rtd-theme Found existing installation: sphinx-rtd-theme 0.4.3 Uninstalling sphinx-rtd-theme-0.4.3: Successfully uninstalled sphinx-rtd-theme-0.4.3 Successfully installed PyGithub-1.54.1 cached-property-1.5.2 deprecated-1.2.11 plantweb-1.2.1 pockets-0.9.1 py-make-0.1.1 pygit2-1.2.1 pyjwt-1.7.1 sphinx-3.2.1 sphinx-rtd-theme-0.5.1 sphinxcontrib-applehelp-1.0.2 sphinxcontrib-devhelp-1.0.2 sphinxcontrib-htmlhelp-1.0.3 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-napoleon-0.7 sphinxcontrib-programoutput-0.16 sphinxcontrib-qthelp-1.0.3 wrapt-1.12.1 [rtd-command-info] start-time: 2021-02-19T00:06:29.232063Z, end-time: 2021-02-19T00:06:30.020664Z, duration: 0, exit-code: 0 python ./setup.py install --force running install running bdist_egg running egg_info creating emodpy_malaria.egg-info writing emodpy_malaria.egg-info/PKG-INFO writing dependency_links to emodpy_malaria.egg-info/dependency_links.txt writing requirements to emodpy_malaria.egg-info/requires.txt writing top-level names to emodpy_malaria.egg-info/top_level.txt writing manifest file 'emodpy_malaria.egg-info/SOURCES.txt' reading manifest file 'emodpy_malaria.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'emodpy_malaria.egg-info/SOURCES.txt' installing library code to build/bdist.linux-x86_64/egg running install_lib running build_py creating build creating build/lib creating build/lib/tests copying tests/__init__.py -> build/lib/tests creating build/lib/emodpy_malaria copying emodpy_malaria/__init__.py -> build/lib/emodpy_malaria copying emodpy_malaria/config.py -> build/lib/emodpy_malaria creating build/lib/tests/unittests copying tests/unittests/test_malaria_interventions.py -> build/lib/tests/unittests copying tests/unittests/test_import.py -> build/lib/tests/unittests copying tests/unittests/__init__.py -> build/lib/tests/unittests copying tests/unittests/test_malaria_interventions_as_files.py -> build/lib/tests/unittests copying tests/unittests/test_malaria_reporters.py -> build/lib/tests/unittests copying tests/unittests/get_unittest_coverage.py -> build/lib/tests/unittests copying tests/unittests/test_malaria_config.py -> build/lib/tests/unittests copying tests/unittests/schema_path_file.py -> build/lib/tests/unittests creating build/lib/emodpy_malaria/reporters copying emodpy_malaria/reporters/builtin.py -> build/lib/emodpy_malaria/reporters copying emodpy_malaria/reporters/__init__.py -> build/lib/emodpy_malaria/reporters creating build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/ivermectin.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/drug.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/drug_campaign.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/spacespraying.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/outdoorrestkill.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/irs.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/sugartrap.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/__init__.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/diag_survey.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/bednet.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/common.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/udbednet.py -> build/lib/emodpy_malaria/interventions creating build/lib/emodpy_malaria/demographics copying emodpy_malaria/demographics/MalariaDemographics.py -> build/lib/emodpy_malaria/demographics copying emodpy_malaria/demographics/__init__.py -> build/lib/emodpy_malaria/demographics copying emodpy_malaria/malaria_drug_params.csv -> build/lib/emodpy_malaria copying emodpy_malaria/malaria_vs_params.csv -> build/lib/emodpy_malaria creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/egg creating build/bdist.linux-x86_64/egg/tests creating build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_malaria_interventions.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_import.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/__init__.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_malaria_interventions_as_files.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_malaria_reporters.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/get_unittest_coverage.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_malaria_config.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/schema_path_file.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/__init__.py -> build/bdist.linux-x86_64/egg/tests creating build/bdist.linux-x86_64/egg/emodpy_malaria copying build/lib/emodpy_malaria/__init__.py -> build/bdist.linux-x86_64/egg/emodpy_malaria copying build/lib/emodpy_malaria/malaria_drug_params.csv -> build/bdist.linux-x86_64/egg/emodpy_malaria copying build/lib/emodpy_malaria/malaria_vs_params.csv -> build/bdist.linux-x86_64/egg/emodpy_malaria copying build/lib/emodpy_malaria/config.py -> build/bdist.linux-x86_64/egg/emodpy_malaria creating build/bdist.linux-x86_64/egg/emodpy_malaria/reporters copying build/lib/emodpy_malaria/reporters/builtin.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/reporters copying build/lib/emodpy_malaria/reporters/__init__.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/reporters creating build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/ivermectin.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/drug.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/drug_campaign.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/spacespraying.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/outdoorrestkill.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/irs.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/sugartrap.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/__init__.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/diag_survey.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/bednet.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/common.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/udbednet.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions creating build/bdist.linux-x86_64/egg/emodpy_malaria/demographics copying build/lib/emodpy_malaria/demographics/MalariaDemographics.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/demographics copying build/lib/emodpy_malaria/demographics/__init__.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/demographics byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_malaria_interventions.py to test_malaria_interventions.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_import.py to test_import.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_malaria_interventions_as_files.py to test_malaria_interventions_as_files.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_malaria_reporters.py to test_malaria_reporters.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/get_unittest_coverage.py to get_unittest_coverage.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_malaria_config.py to test_malaria_config.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/schema_path_file.py to schema_path_file.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/config.py to config.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/reporters/builtin.py to builtin.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/reporters/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/ivermectin.py to ivermectin.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/drug.py to drug.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/drug_campaign.py to drug_campaign.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/spacespraying.py to spacespraying.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/outdoorrestkill.py to outdoorrestkill.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/irs.py to irs.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/sugartrap.py to sugartrap.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/diag_survey.py to diag_survey.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/bednet.py to bednet.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/common.py to common.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/udbednet.py to udbednet.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/demographics/MalariaDemographics.py to MalariaDemographics.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/demographics/__init__.py to __init__.cpython-37.pyc creating build/bdist.linux-x86_64/egg/EGG-INFO copying emodpy_malaria.egg-info/PKG-INFO -> build/bdist.linux-x86_64/egg/EGG-INFO copying emodpy_malaria.egg-info/SOURCES.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying emodpy_malaria.egg-info/dependency_links.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying emodpy_malaria.egg-info/requires.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying emodpy_malaria.egg-info/top_level.txt -> build/bdist.linux-x86_64/egg/EGG-INFO zip_safe flag not set; analyzing archive contents... emodpy_malaria.__pycache__.config.cpython-37: module references __file__ tests.unittests.__pycache__.schema_path_file.cpython-37: module references __file__ tests.unittests.__pycache__.test_malaria_config.cpython-37: module references __file__ tests.unittests.__pycache__.test_malaria_interventions.cpython-37: module references __file__ tests.unittests.__pycache__.test_malaria_reporters.cpython-37: module references __file__ creating dist creating 'dist/emodpy_malaria-0.0.29-py3.7.egg' and adding 'build/bdist.linux-x86_64/egg' to it removing 'build/bdist.linux-x86_64/egg' (and everything under it) Processing emodpy_malaria-0.0.29-py3.7.egg creating /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages/emodpy_malaria-0.0.29-py3.7.egg Extracting emodpy_malaria-0.0.29-py3.7.egg to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Adding emodpy-malaria 0.0.29 to easy-install.pth file Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages/emodpy_malaria-0.0.29-py3.7.egg Processing dependencies for emodpy-malaria==0.0.29 Searching for emodpy==1.10.1 Best match: emodpy 1.10.1 Adding emodpy 1.10.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for astunparse==1.6.3 Best match: astunparse 1.6.3 Adding astunparse 1.6.3 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for idmtools==1.6.2 Best match: idmtools 1.6.2 Adding idmtools 1.6.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for emod-api==1.7.4 Best match: emod-api 1.7.4 Adding emod-api 1.7.4 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for idmtools-models==1.6.2 Best match: idmtools-models 1.6.2 Adding idmtools-models 1.6.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for astor==0.8.1 Best match: astor 0.8.1 Adding astor 0.8.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for idmtools-platform-comps==1.6.2 Best match: idmtools-platform-comps 1.6.2 Adding idmtools-platform-comps 1.6.2 to easy-install.pth file Installing comps-cli script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for click==7.1.2 Best match: click 7.1.2 Adding click 7.1.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for matplotlib==3.3.4 Best match: matplotlib 3.3.4 Adding matplotlib 3.3.4 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for bs4==0.0.1 Best match: bs4 0.0.1 Adding bs4 0.0.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for keyring==22.0.1 Best match: keyring 22.0.1 Adding keyring 22.0.1 to easy-install.pth file Installing keyring script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for wheel==0.36.2 Best match: wheel 0.36.2 Adding wheel 0.36.2 to easy-install.pth file Installing wheel script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for six==1.15.0 Best match: six 1.15.0 Adding six 1.15.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for tabulate==0.8.8 Best match: tabulate 0.8.8 Adding tabulate 0.8.8 to easy-install.pth file Installing tabulate script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for PyYAML==5.3.1 Best match: PyYAML 5.3.1 Adding PyYAML 5.3.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for diskcache==5.1.0 Best match: diskcache 5.1.0 Adding diskcache 5.1.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for more-itertools==8.6.0 Best match: more-itertools 8.6.0 Adding more-itertools 8.6.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for tqdm==4.57.0 Best match: tqdm 4.57.0 Adding tqdm 4.57.0 to easy-install.pth file Installing tqdm script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for humanfriendly==8.2 Best match: humanfriendly 8.2 Adding humanfriendly 8.2 to easy-install.pth file Installing humanfriendly script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for packaging==20.9 Best match: packaging 20.9 Adding packaging 20.9 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for pluggy==0.13.1 Best match: pluggy 0.13.1 Adding pluggy 0.13.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for numpy==1.19.3 Best match: numpy 1.19.3 Adding numpy 1.19.3 to easy-install.pth file Installing f2py script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Installing f2py3 script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Installing f2py3.7 script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for pandas==1.1.5 Best match: pandas 1.1.5 Adding pandas 1.1.5 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for coloredlogs==14.3 Best match: coloredlogs 14.3 Adding coloredlogs 14.3 to easy-install.pth file Installing coloredlogs script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for pipreqs==0.4.10 Best match: pipreqs 0.4.10 Adding pipreqs 0.4.10 to easy-install.pth file Installing pipreqs script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for backoff==1.10.0 Best match: backoff 1.10.0 Adding backoff 1.10.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for pyproj==3.0.0.post1 Best match: pyproj 3.0.0.post1 Adding pyproj 3.0.0.post1 to easy-install.pth file Installing pyproj script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for Shapely==1.7.1 Best match: Shapely 1.7.1 Adding Shapely 1.7.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for geopy==2.1.0 Best match: geopy 2.1.0 Adding geopy 2.1.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for scipy==1.6.1 Best match: scipy 1.6.1 Adding scipy 1.6.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for lz4==3.1.3 Best match: lz4 3.1.3 Adding lz4 3.1.3 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for Jinja2==2.11.3 Best match: Jinja2 2.11.3 Adding Jinja2 2.11.3 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for pyCOMPS==2.4.1 Best match: pyCOMPS 2.4.1 Adding pyCOMPS 2.4.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for pyparsing==2.4.7 Best match: pyparsing 2.4.7 Adding pyparsing 2.4.7 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for Pillow==8.1.0 Best match: Pillow 8.1.0 Adding Pillow 8.1.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for python-dateutil==2.8.1 Best match: python-dateutil 2.8.1 Adding python-dateutil 2.8.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for kiwisolver==1.3.1 Best match: kiwisolver 1.3.1 Adding kiwisolver 1.3.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for cycler==0.10.0 Best match: cycler 0.10.0 Adding cycler 0.10.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for beautifulsoup4==4.9.3 Best match: beautifulsoup4 4.9.3 Adding beautifulsoup4 4.9.3 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for importlib-metadata==3.4.0 Best match: importlib-metadata 3.4.0 Adding importlib-metadata 3.4.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for jeepney==0.6.0 Best match: jeepney 0.6.0 Adding jeepney 0.6.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for SecretStorage==3.3.1 Best match: SecretStorage 3.3.1 Adding SecretStorage 3.3.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for pytz==2021.1 Best match: pytz 2021.1 Adding pytz 2021.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for docopt==0.6.2 Best match: docopt 0.6.2 Adding docopt 0.6.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for yarg==0.1.9 Best match: yarg 0.1.9 Adding yarg 0.1.9 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for certifi==2020.12.5 Best match: certifi 2020.12.5 Adding certifi 2020.12.5 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for geographiclib==1.50 Best match: geographiclib 1.50 Adding geographiclib 1.50 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for MarkupSafe==1.1.1 Best match: MarkupSafe 1.1.1 Adding MarkupSafe 1.1.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for future==0.18.2 Best match: future 0.18.2 Adding future 0.18.2 to easy-install.pth file Installing futurize script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Installing pasteurize script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for xdg==5.0.1 Best match: xdg 5.0.1 Adding xdg 5.0.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for requests==2.25.1 Best match: requests 2.25.1 Adding requests 2.25.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for soupsieve==2.2 Best match: soupsieve 2.2 Adding soupsieve 2.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for typing-extensions==3.7.4.3 Best match: typing-extensions 3.7.4.3 Adding typing-extensions 3.7.4.3 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for zipp==3.4.0 Best match: zipp 3.4.0 Adding zipp 3.4.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for cryptography==3.4.6 Best match: cryptography 3.4.6 Adding cryptography 3.4.6 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for urllib3==1.26.3 Best match: urllib3 1.26.3 Adding urllib3 1.26.3 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for idna==2.10 Best match: idna 2.10 Adding idna 2.10 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for chardet==4.0.0 Best match: chardet 4.0.0 Adding chardet 4.0.0 to easy-install.pth file Installing chardetect script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for cffi==1.14.5 Best match: cffi 1.14.5 Adding cffi 1.14.5 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Searching for pycparser==2.20 Best match: pycparser 2.20 Adding pycparser 2.20 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.7/site-packages Finished processing dependencies for emodpy-malaria==0.0.29 [rtd-command-info] start-time: 2021-02-19T00:06:31.228820Z, end-time: 2021-02-19T00:06:31.300327Z, duration: 0, exit-code: 0 cat docs/conf.py # -*- coding: utf-8 -*- # # Sphinx Demo docs build configuration file, created by # sphinx-quickstart on Fri Aug 26 16:52:16 2016. # # This file is execfile()d with the current directory set to its # containing dir. # # Note that not all possible configuration values are present in this # autogenerated file. # # All configuration values have a default; values that are commented out # serve to show the default. # If extensions (or modules to document with autodoc) are in another directory, # add these directories to sys.path here. If the directory is relative to the # docs root, use os.path.abspath to make it absolute, like shown here. # import os import subprocess import sys import sphinx_rtd_theme import configparser from datetime import datetime if sys.platform in ["linux", "darwin"]: subprocess.check_output(["make", "generate-api"], cwd=os.path.dirname(os.path.abspath(__file__))) else: subprocess.check_output(["make.bat", "generate-api"], cwd=os.path.dirname(os.path.abspath(__file__))) # -- General configuration ------------------------------------------------ # If your docs needs a minimal Sphinx version, state it here. # # needs_sphinx = '1.0' # Add any Sphinx extension module names here, as strings. They can be # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom # ones. extensions = [ 'sphinx.ext.mathjax', 'sphinx.ext.githubpages', 'sphinx.ext.autodoc', 'sphinxcontrib.napoleon', 'sphinx.ext.todo', 'plantweb.directive', 'sphinxcontrib.programoutput' ] plantuml = 'plantweb' autodoc_default_options = { 'member-order': 'bysource', 'members': None, 'exclude-members': '__all__' } autodoc_mock_imports = [] napoleon_google_docstring = True # napoleon_numpy_docstring = True # Add any paths that contain templates here, relative to this directory. templates_path = ['_templates'] # The suffix(es) of source filenames. # You can specify multiple suffix as a list of string: # # source_suffix = ['.rst', '.md'] source_suffix = '.rst' # The encoding of source files. # # source_encoding = 'utf-8-sig' # The master toctree document. master_doc = 'index' # General information about the project. project = u'emodpy-malaria' copyright = f'1999 - {datetime.today().year}, Bill & Melinda Gates Foundation. All rights reserved.' author = u'Institute for Disease Modeling' # The version info for the project you're documenting, acts as replacement for # |version| and |release|, also used in various other places throughout the # built documents. # # The short X.Y version. #current_path = os.path.dirname(__file__) #version_path = os.path.join(current_path, '..', '.bumpversion.cfg') #config = configparser.ConfigParser() #config.read(version_path) #version = config['bumpversion']['current_version'] # The full version, including alpha/beta/rc tags. # release = u'1.0' # The language for content autogenerated by Sphinx. Refer to docs # for a list of supported languages. # # This is also used if you do content translation via gettext catalogs. # Usually you set "language" from the command line for these cases. language = None # There are two options for replacing |today|: either, you set today to some # non-false value, then it is used: # # today = '' # # Else, today_fmt is used as the format for a strftime call. # # today_fmt = '%B %d, %Y' # List of patterns, relative to source directory, that match files and # directories to ignore when looking for source files. # This patterns also effect to html_static_path and html_extra_path exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store'] # The reST default role (used for this markup: `text`) to use for all # documents. # # default_role = None # If true, '()' will be appended to :func: etc. cross-reference text. # # add_function_parentheses = True # If true, the current module name will be prepended to all description # unit titles (such as .. function::). # # add_module_names = True # If true, sectionauthor and moduleauthor directives will be shown in the # output. They are ignored by default. # # show_authors = False # The name of the Pygments (syntax highlighting) style to use. pygments_style = 'sphinx' # A list of ignored prefixes for module index sorting. # modindex_common_prefix = [] # If true, keep warnings as "system message" paragraphs in the built documents. # keep_warnings = False # If true, `todo` and `todoList` produce output, else they produce nothing. todo_include_todos = False # RST epilog is added to the end of every topic. Useful for replace # directives to use across the docset. rst_epilog = "\n.. include:: /variables.txt" # -- Options for HTML output ---------------------------------------------- # The theme to use for HTML and HTML Help pages. See the docs for # a list of builtin themes. # html_theme = 'sphinx_rtd_theme' # Theme options are theme-specific and customize the look and feel of a theme # further. For a list of options available for each theme, see the # docs. # # # html_theme_options = { # } # Add any paths that contain custom themes here, relative to this directory. html_theme_path = [sphinx_rtd_theme.get_html_theme_path()] # The name for this set of Sphinx documents. # " v docs" by default. # # html_title = u'Sphinx Demo v1.0' # A shorter title for the navigation bar. Default is the same as html_title. # # html_short_title = None # The name of an image file (relative to this directory) to place at the top # of the sidebar. # html_logo = "images/IDM_white.png" # The name of an image file (relative to this directory) to use as a favicon of # the docs. This file should be a Windows icon file (.ico) being 16x16 or 32x32 # pixels large. # html_favicon = "images/favicon.ico" # Add any paths that contain custom static files (such as style sheets) here, # relative to this directory. They are copied after the builtin static files, # so a file named "default.css" will overwrite the builtin "default.css". html_static_path = ['_static'] html_context = { 'css_files': [ '_static/theme_overrides.css' ] } # Add any extra paths that contain custom files (such as robots.txt or # .htaccess) here, relative to this directory. These files are copied # directly to the root of the docs. # # html_extra_path = [] # If not None, a 'Last updated on:' timestamp is inserted at every page # bottom, using the given strftime format. # The empty string is equivalent to '%b %d, %Y'. # # html_last_updated_fmt = None # If true, SmartyPants will be used to convert quotes and dashes to # typographically correct entities. # # html_use_smartypants = True # Custom sidebar templates, maps document names to template names. # # html_sidebars = {} # Additional templates that should be rendered to pages, maps page names to # template names. # # html_additional_pages = {} # If false, no module index is generated. # # html_domain_indices = True # If false, no index is generated. # # html_use_index = True # If true, the index is split into individual pages for each letter. # # html_split_index = False # If true, links to the reST sources are added to the pages. # html_show_sourcelink = False # If true, "Created using Sphinx" is shown in the HTML footer. Default is True. # html_show_sphinx = False # If true, "(C) Copyright ..." is shown in the HTML footer. Default is True. # # html_show_copyright = True # If true, an OpenSearch description file will be output, and all pages will # contain a tag referring to it. The value of this option must be the # base URL from which the finished HTML is served. # html_use_opensearch = 'www.idmod.org/docs/' # This is the file name suffix for HTML files (e.g. ".xhtml"). # html_file_suffix = None # Language to be used for generating the HTML full-text search index. # Sphinx supports the following languages: # 'da', 'de', 'en', 'es', 'fi', 'fr', 'hu', 'it', 'ja' # 'nl', 'no', 'pt', 'ro', 'ru', 'sv', 'tr', 'zh' # # html_search_language = 'en' # A dictionary with options for the search language support, empty by default. # 'ja' uses this config value. # 'zh' user can custom change `jieba` dictionary path. # # html_search_options = {'type': 'default'} # The name of a javascript file (relative to the configuration directory) that # implements a search results scorer. If empty, the default will be used. # # html_search_scorer = 'scorer.js' # Output file base name for HTML help builder. htmlhelp_basename = 'emodpy-malaria' # -- Options for LaTeX output --------------------------------------------- latex_elements = { # The paper size ('letterpaper' or 'a4paper'). # # 'papersize': 'letterpaper', # The font size ('10pt', '11pt' or '12pt'). # # 'pointsize': '10pt', # Additional stuff for the LaTeX preamble. # # 'preamble': '', # Latex figure (float) alignment # # 'figure_align': 'htbp', } # Grouping the document tree into LaTeX files. List of tuples # (source start file, target name, title, # author, documentclass [howto, manual, or own class]). latex_documents = [ (master_doc, 'emodpy-malaria-docs.tex', u'emodpy-malaria', u'Institute for Disease Modeling', 'manual'), ] # The name of an image file (relative to this directory) to place at the top of # the title page. # # latex_logo = None # For "manual" documents, if this is true, then toplevel headings are parts, # not chapters. # # latex_use_parts = False # If true, show page references after internal links. # # latex_show_pagerefs = False # If true, show URL addresses after external links. # # latex_show_urls = False # Documents to append as an appendix to all manuals. # # latex_appendices = [] # It false, will not define \strong, \code, itleref, \crossref ... but only # \sphinxstrong, ..., \sphinxtitleref, ... To help avoid clash with user added # packages. # # latex_keep_old_macro_names = True # If false, no module index is generated. # # latex_domain_indices = True # -- Options for manual page output --------------------------------------- # One entry per manual page. List of tuples # (source start file, name, description, authors, manual section). man_pages = [ (master_doc, 'emodpy-malaria-docs', u'emodpy-malaria', [author], 1) ] # If true, show URL addresses after external links. # man_show_urls = True # -- Options for Texinfo output ------------------------------------------- # Grouping the document tree into Texinfo files. List of tuples # (source start file, target name, title, author, # dir menu entry, description, category) texinfo_documents = [ (master_doc, 'emodpy-malaria-docs', u'emodpy-malaria', author, 'Institute for Disease Modeling', 'How to use emodpy for malaria simulations.', 'Miscellaneous'), ] # Documents to append as an appendix to all manuals. # # texinfo_appendices = [] # If false, no module index is generated. # # texinfo_domain_indices = True # How to display URL addresses: 'footnote', 'no', or 'inline'. # # texinfo_show_urls = 'footnote' # If true, do not generate a @detailmenu in the "Top" node's menu. # # texinfo_no_detailmenu = False # Example configuration for intersphinx: refer to the Python standard library. # intersphinx_mapping = {'https://docs.python.org/': None} ########################################################################### # auto-created readthedocs.org specific configuration # ########################################################################### # # The following code was added during an automated build on readthedocs.org # It is auto created and injected for every build. The result is based on the # conf.py.tmpl file found in the readthedocs.org codebase: # https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl # import importlib import sys import os.path from six import string_types from sphinx import version_info # Get suffix for proper linking to GitHub # This is deprecated in Sphinx 1.3+, # as each page can have its own suffix if globals().get('source_suffix', False): if isinstance(source_suffix, string_types): SUFFIX = source_suffix elif isinstance(source_suffix, (list, tuple)): # Sphinx >= 1.3 supports list/tuple to define multiple suffixes SUFFIX = source_suffix[0] elif isinstance(source_suffix, dict): # Sphinx >= 1.8 supports a mapping dictionary for multiple suffixes SUFFIX = list(source_suffix.keys())[0] # make a ``list()`` for py2/py3 compatibility else: # default to .rst SUFFIX = '.rst' else: SUFFIX = '.rst' # Add RTD Static Path. Add to the end because it overwrites previous files. if not 'html_static_path' in globals(): html_static_path = [] if os.path.exists('_static'): html_static_path.append('_static') # Add RTD Theme only if they aren't overriding it already using_rtd_theme = ( ( 'html_theme' in globals() and html_theme in ['default'] and # Allow people to bail with a hack of having an html_style 'html_style' not in globals() ) or 'html_theme' not in globals() ) if using_rtd_theme: theme = importlib.import_module('sphinx_rtd_theme') html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} if 'html_theme_path' in globals(): html_theme_path.append(theme.get_html_theme_path()) else: html_theme_path = [theme.get_html_theme_path()] if globals().get('websupport2_base_url', False): websupport2_base_url = 'https://readthedocs.com/websupport' websupport2_static_url = 'https://assets.readthedocs.com/' #Add project information to the template context. context = { 'using_theme': using_rtd_theme, 'html_theme': html_theme, 'current_version': "latest", 'version_slug': "latest", 'MEDIA_URL': "https://media.readthedocs.com/media/", 'STATIC_URL': "https://assets.readthedocs.com/", 'PRODUCTION_DOMAIN': "readthedocs.com", 'versions': [ ], 'downloads': [ ("pdf", "//docs.idmod.org/_/downloads/emodpy-malaria/en/latest/pdf/"), ("html", "//docs.idmod.org/_/downloads/emodpy-malaria/en/latest/htmlzip/"), ], 'subprojects': [ ], 'slug': 'institute-for-disease-modeling-emodpy-malaria', 'name': u'emodpy-malaria', 'rtd_language': u'en', 'programming_language': u'words', 'canonical_url': 'https://docs.idmod.org/projects/emodpy-malaria/en/v0.0.29/', 'analytics_code': 'UA-87656833-3', 'single_version': False, 'conf_py_path': '/docs/', 'api_host': 'https://readthedocs.com', 'github_user': 'InstituteforDiseaseModeling', 'proxied_api_host': '/_', 'github_repo': 'emodpy-malaria', 'github_version': 'main', 'display_github': True, 'bitbucket_user': 'None', 'bitbucket_repo': 'None', 'bitbucket_version': 'main', 'display_bitbucket': False, 'gitlab_user': 'None', 'gitlab_repo': 'None', 'gitlab_version': 'main', 'display_gitlab': False, 'READTHEDOCS': True, 'using_theme': (html_theme == "default"), 'new_theme': (html_theme == "sphinx_rtd_theme"), 'source_suffix': SUFFIX, 'ad_free': False, 'docsearch_disabled': False, 'user_analytics_code': 'UA-87656833-3', 'global_analytics_code': 'UA-17997319-2', 'commit': 'd8d58841', } # For sphinx >=1.8 we can use html_baseurl to set the canonical URL. # https://www.sphinx-doc.org/en/master/usage/configuration.html#confval-html_baseurl if version_info >= (1, 8): if not globals().get('html_baseurl'): html_baseurl = context['canonical_url'] context['canonical_url'] = None if 'html_context' in globals(): html_context.update(context) else: html_context = context # Add custom RTD extension if 'extensions' in globals(): # Insert at the beginning because it can interfere # with other extensions. # See https://github.com/rtfd/readthedocs.org/pull/4054 extensions.insert(0, "readthedocs_ext.readthedocs") else: extensions = ["readthedocs_ext.readthedocs"] # Add External version warning banner to the external version documentation if 'branch' == 'external': extensions.insert(1, "readthedocs_ext.external_version_warning") readthedocs_vcs_url = 'None' readthedocs_build_url = 'https://readthedocs.com/projects/institute-for-disease-modeling-emodpy-malaria/builds/566196/' project_language = 'en' # User's Sphinx configurations language_user = globals().get('language', None) latex_engine_user = globals().get('latex_engine', None) latex_elements_user = globals().get('latex_elements', None) # Remove this once xindy gets installed in Docker image and XINDYOPS # env variable is supported # https://github.com/rtfd/readthedocs-docker-images/pull/98 latex_use_xindy = False chinese = any([ language_user in ('zh_CN', 'zh_TW'), project_language in ('zh_CN', 'zh_TW'), ]) japanese = any([ language_user == 'ja', project_language == 'ja', ]) if chinese: latex_engine = latex_engine_user or 'xelatex' latex_elements_rtd = { 'preamble': '\\usepackage[UTF8]{ctex}\n', } latex_elements = latex_elements_user or latex_elements_rtd elif japanese: latex_engine = latex_engine_user or 'platex' # Make sure our build directory is always excluded exclude_patterns = globals().get('exclude_patterns', []) exclude_patterns.extend(['_build']) [rtd-command-info] start-time: 2021-02-19T00:06:31.509588Z, end-time: 2021-02-19T00:06:38.315616Z, duration: 6, exit-code: 0 python -m sphinx -T -W --keep-going -b readthedocs -d _build/doctrees-readthedocs -D language=en . _build/html Running Sphinx v3.2.1 rm: cannot remove 'modules.rst': No such file or directory make: [generate-api] Error 1 (ignored) rm: cannot remove 'emodpy_malaria_index.rst': No such file or directory make: [generate-api] Error 1 (ignored) loading translations [en]... done making output directory... done building [mo]: targets for 0 po files that are out of date building [readthedocs]: targets for 21 source files that are out of date updating environment: [new config] 21 added, 0 changed, 0 removed reading sources... [ 4%] emodpy_malaria reading sources... [ 9%] emodpy_malaria.config reading sources... [ 14%] emodpy_malaria.demographics reading sources... [ 19%] emodpy_malaria.demographics.MalariaDemographics reading sources... [ 23%] emodpy_malaria.interventions reading sources... [ 28%] emodpy_malaria.interventions.bednet reading sources... [ 33%] emodpy_malaria.interventions.common reading sources... [ 38%] emodpy_malaria.interventions.diag_survey reading sources... [ 42%] emodpy_malaria.interventions.drug reading sources... [ 47%] emodpy_malaria.interventions.drug_campaign reading sources... [ 52%] emodpy_malaria.interventions.irs reading sources... [ 57%] emodpy_malaria.interventions.ivermectin reading sources... [ 61%] emodpy_malaria.interventions.outdoorrestkill reading sources... [ 66%] emodpy_malaria.interventions.spacespraying reading sources... [ 71%] emodpy_malaria.interventions.sugartrap reading sources... [ 76%] emodpy_malaria.interventions.udbednet reading sources... [ 80%] emodpy_malaria.reporters reading sources... [ 85%] emodpy_malaria.reporters.builtin /!\ WARNING: File 'idmtools.ini' Not Found! For details on how to configure idmtools, see https://docs.idmod.org/projects/idmtools/en/v1.6.2/configuration.html for details on how to configure idmtools. reading sources... [ 90%] emodpy_malaria_index reading sources... [ 95%] index reading sources... [100%] installation looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 4%] emodpy_malaria writing output... [ 9%] emodpy_malaria.config writing output... [ 14%] emodpy_malaria.demographics writing output... [ 19%] emodpy_malaria.demographics.MalariaDemographics writing output... [ 23%] emodpy_malaria.interventions writing output... [ 28%] emodpy_malaria.interventions.bednet writing output... [ 33%] emodpy_malaria.interventions.common writing output... [ 38%] emodpy_malaria.interventions.diag_survey writing output... [ 42%] emodpy_malaria.interventions.drug writing output... [ 47%] emodpy_malaria.interventions.drug_campaign writing output... [ 52%] emodpy_malaria.interventions.irs writing output... [ 57%] emodpy_malaria.interventions.ivermectin writing output... [ 61%] emodpy_malaria.interventions.outdoorrestkill writing output... [ 66%] emodpy_malaria.interventions.spacespraying writing output... [ 71%] emodpy_malaria.interventions.sugartrap writing output... [ 76%] emodpy_malaria.interventions.udbednet writing output... [ 80%] emodpy_malaria.reporters writing output... [ 85%] emodpy_malaria.reporters.builtin writing output... [ 90%] emodpy_malaria_index writing output... [ 95%] index writing output... [100%] installation generating indices... genindex py-modindexdone writing additional pages... search opensearchdone copying static files... ... done copying extra files... done dumping search index in English (code: en)... done dumping object inventory... done build succeeded. The HTML pages are in _build/html. Updating searchtools for Read the Docs search... [rtd-command-info] start-time: 2021-02-19T00:06:38.455383Z, end-time: 2021-02-19T00:06:42.005372Z, duration: 3, exit-code: 0 python -m sphinx -T -W --keep-going -b readthedocssinglehtmllocalmedia -d _build/doctrees-readthedocssinglehtmllocalmedia -D language=en . _build/localmedia Running Sphinx v3.2.1 rm: cannot remove 'modules.rst': No such file or directory make: [generate-api] Error 1 (ignored) loading translations [en]... done making output directory... done building [mo]: targets for 0 po files that are out of date building [readthedocssinglehtmllocalmedia]: all documents updating environment: [new config] 21 added, 0 changed, 0 removed reading sources... [ 4%] emodpy_malaria reading sources... [ 9%] emodpy_malaria.config reading sources... [ 14%] emodpy_malaria.demographics reading sources... [ 19%] emodpy_malaria.demographics.MalariaDemographics reading sources... [ 23%] emodpy_malaria.interventions reading sources... [ 28%] emodpy_malaria.interventions.bednet reading sources... [ 33%] emodpy_malaria.interventions.common reading sources... [ 38%] emodpy_malaria.interventions.diag_survey reading sources... [ 42%] emodpy_malaria.interventions.drug reading sources... [ 47%] emodpy_malaria.interventions.drug_campaign reading sources... [ 52%] emodpy_malaria.interventions.irs reading sources... [ 57%] emodpy_malaria.interventions.ivermectin reading sources... [ 61%] emodpy_malaria.interventions.outdoorrestkill reading sources... [ 66%] emodpy_malaria.interventions.spacespraying reading sources... [ 71%] emodpy_malaria.interventions.sugartrap reading sources... [ 76%] emodpy_malaria.interventions.udbednet reading sources... [ 80%] emodpy_malaria.reporters reading sources... [ 85%] emodpy_malaria.reporters.builtin /!\ WARNING: File 'idmtools.ini' Not Found! For details on how to configure idmtools, see https://docs.idmod.org/projects/idmtools/en/v1.6.2/configuration.html for details on how to configure idmtools. reading sources... [ 90%] emodpy_malaria_index reading sources... [ 95%] index reading sources... [100%] installation looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done assembling single document... installation emodpy_malaria_index emodpy_malaria emodpy_malaria.demographics emodpy_malaria.demographics.MalariaDemographics emodpy_malaria.interventions emodpy_malaria.interventions.bednet emodpy_malaria.interventions.common emodpy_malaria.interventions.diag_survey emodpy_malaria.interventions.drug emodpy_malaria.interventions.drug_campaign emodpy_malaria.interventions.irs emodpy_malaria.interventions.ivermectin emodpy_malaria.interventions.outdoorrestkill emodpy_malaria.interventions.spacespraying emodpy_malaria.interventions.sugartrap emodpy_malaria.interventions.udbednet emodpy_malaria.reporters emodpy_malaria.reporters.builtin emodpy_malaria.config done writing... done writing additional files... opensearchdone copying static files... ... done copying extra files... done dumping object inventory... done build succeeded. The HTML page is in _build/localmedia. Updating searchtools for Read the Docs search... [rtd-command-info] start-time: 2021-02-19T00:06:42.177213Z, end-time: 2021-02-19T00:06:45.731560Z, duration: 3, exit-code: 0 python -m sphinx -b latex -D language=en -d _build/doctrees . _build/latex Running Sphinx v3.2.1 rm: cannot remove 'modules.rst': No such file or directory make: [generate-api] Error 1 (ignored) loading translations [en]... done making output directory... done building [mo]: targets for 0 po files that are out of date building [latex]: all documents updating environment: [new config] 21 added, 0 changed, 0 removed reading sources... [ 4%] emodpy_malaria reading sources... [ 9%] emodpy_malaria.config reading sources... [ 14%] emodpy_malaria.demographics reading sources... [ 19%] emodpy_malaria.demographics.MalariaDemographics reading sources... [ 23%] emodpy_malaria.interventions reading sources... [ 28%] emodpy_malaria.interventions.bednet reading sources... [ 33%] emodpy_malaria.interventions.common reading sources... [ 38%] emodpy_malaria.interventions.diag_survey reading sources... [ 42%] emodpy_malaria.interventions.drug reading sources... [ 47%] emodpy_malaria.interventions.drug_campaign reading sources... [ 52%] emodpy_malaria.interventions.irs reading sources... [ 57%] emodpy_malaria.interventions.ivermectin reading sources... [ 61%] emodpy_malaria.interventions.outdoorrestkill reading sources... [ 66%] emodpy_malaria.interventions.spacespraying reading sources... [ 71%] emodpy_malaria.interventions.sugartrap reading sources... [ 76%] emodpy_malaria.interventions.udbednet reading sources... [ 80%] emodpy_malaria.reporters reading sources... [ 85%] emodpy_malaria.reporters.builtin /!\ WARNING: File 'idmtools.ini' Not Found! For details on how to configure idmtools, see https://docs.idmod.org/projects/idmtools/en/v1.6.2/configuration.html for details on how to configure idmtools. reading sources... [ 90%] emodpy_malaria_index reading sources... [ 95%] index reading sources... [100%] installation looking for now-outdated files... none found pickling environment... done checking consistency... done processing emodpy-malaria-docs.tex... index installation emodpy_malaria_index emodpy_malaria emodpy_malaria.demographics emodpy_malaria.demographics.MalariaDemographics emodpy_malaria.interventions emodpy_malaria.interventions.bednet emodpy_malaria.interventions.common emodpy_malaria.interventions.diag_survey emodpy_malaria.interventions.drug emodpy_malaria.interventions.drug_campaign emodpy_malaria.interventions.irs emodpy_malaria.interventions.ivermectin emodpy_malaria.interventions.outdoorrestkill emodpy_malaria.interventions.spacespraying emodpy_malaria.interventions.sugartrap emodpy_malaria.interventions.udbednet emodpy_malaria.reporters emodpy_malaria.reporters.builtin emodpy_malaria.config resolving references... done writing... done copying TeX support files... copying TeX support files... done build succeeded. The LaTeX files are in _build/latex. Run 'make' in that directory to run these through (pdf)latex (use `make latexpdf' here to do that automatically). WARNING: Missing searchtools: /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/checkouts/latest/docs/_build/latex/_static/searchtools.js [rtd-command-info] start-time: 2021-02-19T00:06:45.937189Z, end-time: 2021-02-19T00:06:46.000615Z, duration: 0, exit-code: 0 cat latexmkrc $latex = 'latex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $pdflatex = 'pdflatex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $lualatex = 'lualatex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $xelatex = 'xelatex --no-pdf ' . $ENV{'LATEXOPTS'} . ' %O %S'; $makeindex = 'makeindex -s python.ist %O -o %D %S'; add_cus_dep( "glo", "gls", 0, "makeglo" ); sub makeglo { return system( "makeindex -s gglo.ist -o '$_[0].gls' '$_[0].glo'" ); } [rtd-command-info] start-time: 2021-02-19T00:06:46.133421Z, end-time: 2021-02-19T00:06:47.873840Z, duration: 1, exit-code: 0 latexmk -r latexmkrc -pdf -f -dvi- -ps- -jobname=institute-for-disease-modeling-emodpy-malaria -interaction=nonstopmode Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 1, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 2, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 3, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 4, chunk 1. Subroutine makeglo redefined at (eval 11) line 7, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 1, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 2, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 3, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 4, chunk 1. Latexmk: This is Latexmk, John Collins, 1 January 2015, version: 4.41. File::Glob::glob() will disappear in perl 5.30. Use File::Glob::bsd_glob() instead. at /usr/bin/latexmk line 7482. Rule 'pdflatex': Rules & subrules not known to be previously run: pdflatex Rule 'pdflatex': The following rules & subrules became out-of-date: 'pdflatex' ------------ Run number 1 of rule 'pdflatex' ------------ ------------ Running 'pdflatex -interaction=nonstopmode -recorder --jobname="institute-for-disease-modeling-emodpy-malaria" "emodpy-malaria-docs.tex"' ------------ Latexmk: applying rule 'pdflatex'... This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./emodpy-malaria-docs.tex LaTeX2e <2017-04-15> Babel <3.18> and hyphenation patterns for 84 language(s) loaded. 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[3] [4] Chapter 2. 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\T1/ptm/m/it/10 killing_predecay_duration=365\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 165--165 \T1/ptm/m/it/10 re-pelling_decay_rate=0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 165--165 \T1/ptm/m/it/10 pelling_predecay_duration=365\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 165--165 \T1/ptm/m/it/10 us-age_decay_rate=0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 us- Underfull \hbox (badness 10000) in paragraph at lines 165--165 \T1/ptm/m/it/10 age_predecay_duration=365\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 174--174 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age=1.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 174--174 \T1/ptm/m/it/10 block-ing_eff=1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 killing_eff=1\T 1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at 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tsteps_btwn_repetitions: Underfull \hbox (badness 10000) in paragraph at lines 206--206 \T1/ptm/m/it/10 get: ob-ject Underfull \hbox (badness 10000) in paragraph at lines 206--206 \T1/ptm/m/it/10 = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Ev-ery-one\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 6364) in paragraph at lines 206--206 \T1/ptm/m/it/10 start_day: int Underfull \hbox (badness 5203) in paragraph at lines 206--206 \T1/ptm/m/it/10 = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 di-ag-nos- Overfull \hbox (63.55446pt too wide) in paragraph at lines 206--206 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 BLOOD_SMEAR_PARASITES\TS1/ptm/m/it/10 '\T1/pt m/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 206--206 \T1/ptm/m/it/10 di-ag-nos- Underfull \hbox (badness 10000) in paragraph at lines 206--206 \T1/ptm/m/it/10 tic_threshold: Underfull \hbox (badness 10000) in paragraph at lines 206--206 \T1/ptm/m/it/10 float = 40\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 206--206 \T1/ptm/m/it/10 mea-sure- Overfull \hbox (1.01384pt too wide) in paragraph at lines 206--206 \T1/ptm/m/it/10 ment_sensitivity: Underfull \hbox (badness 10000) in paragraph at lines 206--206 \T1/ptm/m/it/10 si-tiv-ity: float Underfull \hbox (badness 10000) in paragraph at lines 206--206 \T1/ptm/m/it/10 = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 speci- Underfull \hbox (badness 10000) in paragraph at lines 206--206 \T1/ptm/m/it/10 str = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Di-ag- Underfull \hbox (badness 10000) in paragraph at lines 206--206 \T1/ptm/m/it/10 nos-tic Sur-vey\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 206--206 \T1/ptm/m/it/10 nodeIDs: list Overfull \hbox (27.58405pt too wide) in paragraph at lines 206--206 \T1/ptm/m/it/10 tive_diagnosis_configs: Underfull \hbox (badness 10000) in paragraph at lines 206--206 \T1/ptm/m/it/10 list = Underfull \hbox (badness 10000) in paragraph at lines 206--206 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 neg-a- Overfull \hbox (27.58405pt too wide) in paragraph at lines 206--206 \T1/ptm/m/it/10 tive_diagnosis_configs: Overfull \hbox (6.95406pt too wide) in paragraph at lines 206--206 \T1/ptm/m/it/10 ceived_test_event: Underfull \hbox (badness 10000) in paragraph at lines 206--206 \T1/ptm/m/it/10 str = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Re- Underfull \hbox (badness 10000) in paragraph at lines 206--206 \T1/ptm/m/it/10 ceived_Test\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 206--206 \T1/ptm/m/it/10 IP_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 206--206 \T1/ptm/m/it/10 list = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 206--206 \T1/ptm/m/it/10 NP_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 206--206 \T1/ptm/m/it/10 list = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 206--206 \T1/ptm/m/it/10 dis-qual-i-fy- Underfull \hbox (badness 10000) in paragraph at lines 206--206 \T1/ptm/m/it/10 ing_properties: Overfull \hbox (9.814pt too wide) in paragraph at lines 206--206 \T1/ptm/m/it/10 ger_condition_list: Underfull \hbox (badness 10000) in paragraph at lines 206--206 \T1/ptm/m/it/10 list = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 206--206 \T1/ptm/m/it/10 lis-ten- Underfull \hbox (badness 10000) in paragraph at lines 206--206 \T1/ptm/m/it/10 ing_duration: Overfull \hbox (29.97432pt too wide) in paragraph at lines 206--206 \T1/ptm/m/it/10 gered_campaign_delay: Underfull \hbox (badness 10000) in paragraph at lines 206--206 \T1/ptm/m/it/10 int = 0\T1/ptm/m/n/10 , Overfull \hbox (47.68343pt too wide) in paragraph at lines 206--206 \T1/ptm/m/it/10 check_eligibility_at_trigger: Overfull \hbox (9.71407pt too wide) in paragraph at lines 206--206 \T1/ptm/m/it/10 pire_recent_drugs: [6] [7] [8] Underfull \hbox (badness 10000) in paragraph at lines 314--319 []\T1/pcr/b/n/10 IP_restrictions \T1/ptm/m/n/10 ^^U List of In-di-vid-u-al-Prop -erty key:value pairs that Underfull \hbox (badness 10000) in paragraph at lines 314--319 \T1/ptm/m/n/10 in-di-vid-u-als must have to re-ceive the di-ag-nos-tic in-ter-v en-tion. For Underfull \hbox (badness 10000) in paragraph at lines 314--319 \T1/ptm/m/n/10 ex-am-ple, \T1/pcr/m/n/10 [{"IndividualProperty1":"PropertyValue 1"}, Underfull \hbox (badness 10000) in paragraph at lines 321--326 []\T1/pcr/b/n/10 NP_restrictions \T1/ptm/m/n/10 ^^U List of Node-Prop-erty key: value pairs Underfull \hbox (badness 10000) in paragraph at lines 321--326 \T1/ptm/m/n/10 that nodes must have to re-ceive the di-ag-nos-tic in-ter-ven-ti on. Underfull \hbox (badness 10000) in paragraph at lines 321--326 \T1/ptm/m/n/10 For ex-am-ple, \T1/pcr/m/n/10 [{"NodeProperty1":"PropertyValue1" }, Underfull \hbox (badness 10000) in paragraph at lines 328--332 []\T1/pcr/b/n/10 disqualifying_properties \T1/ptm/m/n/10 ^^U List of In-di-vid- u-al-Prop-erty Underfull \hbox (badness 10000) in paragraph at lines 328--332 \T1/ptm/m/n/10 key:value pairs that cause an in-ter-ven-tion to be aborted. For ex- Underfull \hbox (badness 10000) in paragraph at lines 328--332 \T1/ptm/m/n/10 am-ple, \T1/pcr/m/n/10 [{"IndividualProperty1":"PropertyValue1"} , Underfull \hbox (badness 10000) in paragraph at lines 351--354 []\T1/pcr/b/n/10 expire_recent_drugs \T1/ptm/m/n/10 ^^U Adds \T1/pcr/m/n/10 [{" DrugStatus:None"}] \T1/ptm/m/n/10 to \T1/ptm/b/n/10 Prop- Underfull \hbox (badness 10000) in paragraph at lines 370--370 \T1/ptm/m/it/10 drug_name=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Chloroquine\TS1/ptm /m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 387--387 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 387--387 \T1/ptm/m/it/10 drug_code: [9] Underfull \hbox (badness 10000) in paragraph at lines 406--406 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cam- Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 paign_type: Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 str = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 MDA\TS1/ptm/m/it/10 '\T 1/ptm/m/n/10 , Underfull \hbox (badness 6775) in paragraph at lines 406--406 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_days: Overfull \hbox (19.21352pt too wide) in paragraph at lines 406--406 \T1/ptm/m/it/10 tsteps_btwn_repetitions: Underfull \hbox (badness 7344) in paragraph at lines 406--406 \T1/ptm/m/it/10 int = 60\T1/ptm/m/n/10 , \T1/ptm/m/it/10 di-ag- Overfull \hbox (51.55446pt too wide) in paragraph at lines 406--406 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 BLOOD_SMEAR_PARASITES\TS1/ptm/m/it/10 '\T1/pt m/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 di-ag-nos- Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 tic_threshold: Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 nos-tic_sensitivity: Underfull \hbox (badness 5203) in paragraph at lines 406--406 \T1/ptm/m/it/10 float = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 di-ag- Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 nos-tic_specificity: Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 ment_sensitivity: Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 float = 0.1\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 fmda_radius: Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 int = 0\T1/ptm/m/n/10 , Overfull \hbox (6.22408pt too wide) in paragraph at lines 406--406 \T1/ptm/m/it/10 node_selection_type: Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 str = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 DIS- Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 TANCE_ONLY\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 trig-ger_coverage: Underfull \hbox (badness 5667) in paragraph at lines 406--406 \T1/ptm/m/it/10 balls: int = 0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 treat-ment_delay: Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 int = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 trig- Overfull \hbox (17.97432pt too wide) in paragraph at lines 406--406 \T1/ptm/m/it/10 gered_campaign_delay: Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 list = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 tar-get_group: Overfull \hbox (33.88365pt too wide) in paragraph at lines 406--406 \T1/ptm/m/it/10 drug_ineligibility_duration: Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 int = 0\T1/ptm/m/n/10 , Overfull \hbox (33.19351pt too wide) in paragraph at lines 406--406 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 list = None\T1/ptm/m/n/10 , Overfull \hbox (26.53346pt too wide) in paragraph at lines 406--406 \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 list = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 dis-qual-i-fy- Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 ing_properties: Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 ger_condition_list: Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 ten-ing_duration: Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 ent_drug_configs: Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 get_residents_only: Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 int = 1\T1/ptm/m/n/10 , Overfull \hbox (35.68343pt too wide) in paragraph at lines 406--406 \T1/ptm/m/it/10 check_eligibility_at_trigger: Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 bool = Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 False\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-ceiv- Overfull \hbox (144.47322pt too wide) in paragraph at lines 406--406 \T1/ptm/m/it/10 ing_drugs_event_name=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Received _Campaign_Drugs\TS1/ptm/m/it/10 '\T1/pcr/m/n/10 ) [10] Overfull \vbox (28.61497pt too high) has occurred while \output is active [11] [12] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pcr.fd) Underfull \hbox (badness 10000) in paragraph at lines 535--539 []\T1/pcr/b/n/10 node_property_restrictions \T1/ptm/m/n/10 ^^U List of Node-Pro p-erty key:value Underfull \hbox (badness 10000) in paragraph at lines 535--539 \T1/ptm/m/n/10 pairs that nodes must have to re-ceive the di-ag-nos-tic in-ter- ven- Underfull \hbox (badness 10000) in paragraph at lines 535--539 \T1/ptm/m/n/10 tion. For ex-am-ple, \T1/pcr/m/n/10 [{"NodeProperty1":"PropertyV alue1"}, Underfull \hbox (badness 10000) in paragraph at lines 541--545 []\T1/pcr/b/n/10 ind_property_restrictions \T1/ptm/m/n/10 ^^U List of In-di-vid -u-al-Prop-erty key:value Underfull \hbox (badness 10000) in paragraph at lines 541--545 \T1/ptm/m/n/10 pairs that in-di-vid-u-als must have to re-ceive the di-ag-nos-t ic in-ter-ven-tion. Underfull \hbox (badness 10000) in paragraph at lines 541--545 \T1/ptm/m/n/10 For ex-am-ple, \T1/pcr/m/n/10 [{"IndividualProperty1":"PropertyV alue1"}, Underfull \hbox (badness 10000) in paragraph at lines 547--551 []\T1/pcr/b/n/10 disqualifying_properties \T1/ptm/m/n/10 ^^U List of In-di-vid- u-al-Prop-erty Underfull \hbox (badness 10000) in paragraph at lines 547--551 \T1/ptm/m/n/10 key:value pairs that cause an in-ter-ven-tion to be aborted. For ex- Underfull \hbox (badness 10000) in paragraph at lines 547--551 \T1/ptm/m/n/10 am-ple, \T1/pcr/m/n/10 [{"IndividualProperty1":"PropertyValue1"} , Underfull \hbox (badness 10000) in paragraph at lines 590--590 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_days: list = Underfull \hbox (badness 10000) in paragraph at lines 590--590 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age: float = Underfull \hbox (badness 10000) in paragraph at lines 590--590 \T1/ptm/m/it/10 1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 drug_configs: list = Underfull \hbox (badness 10000) in paragraph at lines 590--590 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-ceiv-ing_drugs_event: Overfull \hbox (57.71327pt too wide) in paragraph at lines 590--590 \T1/ptm/m/it/10 emod_api.interventions.common.BroadcastEvent Underfull \hbox (badness 10000) in paragraph at lines 590--590 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 rep-e-ti-tions: int = Underfull \hbox (badness 10000) in paragraph at lines 590--590 \T1/ptm/m/it/10 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tsteps_btwn_repetitions: Underfull \hbox (badness 7558) in paragraph at lines 590--590 \T1/ptm/m/it/10 int = 60\T1/ptm/m/n/10 , \T1/ptm/m/it/10 nodeIDs: list = Underfull \hbox (badness 10000) in paragraph at lines 590--590 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ex-pire_recent_drugs: Overfull \hbox (86.50304pt too wide) in paragraph at lines 590--590 \T1/ptm/m/it/10 emod_api.interventions.common.PropertyValueChanger Underfull \hbox (badness 10000) in paragraph at lines 590--590 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 6032) in paragraph at lines 590--590 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 590--590 \T1/ptm/m/it/10 list = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 dis-qual-i-fy- Underfull \hbox (badness 10000) in paragraph at lines 590--590 \T1/ptm/m/it/10 ing_properties: list = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 590--590 \T1/ptm/m/it/10 trig-ger_condition_list: list = [13] Underfull \hbox (badness 10000) in paragraph at lines 608--609 []\T1/pcr/b/n/10 for building, modifying, and writing campaign configuration Underfull \hbox (badness 10000) in paragraph at lines 641--645 []\T1/pcr/b/n/10 node_property_restrictions \T1/ptm/m/n/10 ^^U List of Node-Pro p-erty key:value Underfull \hbox (badness 10000) in paragraph at lines 641--645 \T1/ptm/m/n/10 pairs that nodes must have to re-ceive the di-ag-nos-tic in-ter- ven- Underfull \hbox (badness 10000) in paragraph at lines 641--645 \T1/ptm/m/n/10 tion. For ex-am-ple, \T1/pcr/m/n/10 [{"NodeProperty1":"PropertyV alue1"}, [14] Underfull \hbox (badness 10000) in paragraph at lines 647--651 []\T1/pcr/b/n/10 disqualifying_properties \T1/ptm/m/n/10 ^^U List of In-di-vid- u-al-Prop-erty Underfull \hbox (badness 10000) in paragraph at lines 647--651 \T1/ptm/m/n/10 key:value pairs that cause an in-ter-ven-tion to be aborted. For ex- Underfull \hbox (badness 10000) in paragraph at lines 647--651 \T1/ptm/m/n/10 am-ple, \T1/pcr/m/n/10 [{"IndividualProperty1":"PropertyValue1"} , Underfull \hbox (badness 10000) in paragraph at lines 691--691 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_days: list = Underfull \hbox (badness 10000) in paragraph at lines 691--691 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age: float = Underfull \hbox (badness 10000) in paragraph at lines 691--691 \T1/ptm/m/it/10 1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 drug_configs: list = Underfull \hbox (badness 10000) in paragraph at lines 691--691 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-ceiv-ing_drugs_event: Overfull \hbox (63.71327pt too wide) in paragraph at lines 691--691 \T1/ptm/m/it/10 emod_api.interventions.common.BroadcastEvent Underfull \hbox (badness 10000) in paragraph at lines 691--691 \T1/ptm/m/it/10 tsteps_btwn_repetitions: int Underfull \hbox (badness 7504) in paragraph at lines 691--691 \T1/ptm/m/it/10 = 60\T1/ptm/m/n/10 , \T1/ptm/m/it/10 treat-ment_delay: int Underfull \hbox (badness 10000) in paragraph at lines 691--691 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 BLOOD_SMEAR_PARASITES\TS1/ptm/m/it/10 '\T1/pt m/m/n/10 , Underfull \hbox (badness 7468) in paragraph at lines 691--691 \T1/ptm/m/it/10 float = 0.1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 nodeIDs: list Overfull \hbox (92.50304pt too wide) in paragraph at lines 691--691 \T1/ptm/m/it/10 emod_api.interventions.common.PropertyValueChanger Underfull \hbox (badness 10000) in paragraph at lines 691--691 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 691--691 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 691--691 \T1/ptm/m/it/10 list = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 691--691 \T1/ptm/m/it/10 list = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar-get_group: Underfull \hbox (badness 10000) in paragraph at lines 691--691 \T1/ptm/m/it/10 any = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Ev-ery-one\TS1/ptm/m/it /10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 trig- Underfull \hbox (badness 10000) in paragraph at lines 691--691 \T1/ptm/m/it/10 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 check_eligibility_at_trigger: [15] Underfull \hbox (badness 10000) in paragraph at lines 725--732 []\T1/pcr/b/n/10 diagnostic_type \T1/ptm/m/n/10 ^^U Di-ag-nos-tic type. Avail-a ble op-tions are: * Underfull \hbox (badness 10000) in paragraph at lines 725--732 \T1/ptm/m/n/10 TRUE_INFECTION_STATUS * BLOOD_SMEAR * PCR * PF_HRP2 * [16] Underfull \hbox (badness 10000) in paragraph at lines 755--759 []\T1/pcr/b/n/10 node_property_restrictions \T1/ptm/m/n/10 ^^U List of Node-Pro p-erty key:value Underfull \hbox (badness 10000) in paragraph at lines 755--759 \T1/ptm/m/n/10 pairs that nodes must have to re-ceive the di-ag-nos-tic in-ter- ven- Underfull \hbox (badness 10000) in paragraph at lines 755--759 \T1/ptm/m/n/10 tion. For ex-am-ple, \T1/pcr/m/n/10 [{"NodeProperty1":"PropertyV alue1"}, Underfull \hbox (badness 10000) in paragraph at lines 761--765 []\T1/pcr/b/n/10 ind_property_restrictions \T1/ptm/m/n/10 ^^U List of In-di-vid -u-al-Prop-erty key:value Underfull \hbox (badness 10000) in paragraph at lines 761--765 \T1/ptm/m/n/10 pairs that in-di-vid-u-als must have to re-ceive the di-ag-nos-t ic in-ter-ven-tion. Underfull \hbox (badness 10000) in paragraph at lines 761--765 \T1/ptm/m/n/10 For ex-am-ple, \T1/pcr/m/n/10 [{"IndividualProperty1":"PropertyV alue1"}, Underfull \hbox (badness 10000) in paragraph at lines 767--771 []\T1/pcr/b/n/10 disqualifying_properties \T1/ptm/m/n/10 ^^U List of In-di-vid- u-al-Prop-erty Underfull \hbox (badness 10000) in paragraph at lines 767--771 \T1/ptm/m/n/10 key:value pairs that cause an in-ter-ven-tion to be aborted. For ex- Underfull \hbox (badness 10000) in paragraph at lines 767--771 \T1/ptm/m/n/10 am-ple, \T1/pcr/m/n/10 [{"IndividualProperty1":"PropertyValue1"} , Underfull \hbox (badness 10000) in paragraph at lines 809--809 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_days: list = Underfull \hbox (badness 10000) in paragraph at lines 809--809 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 trig-ger_coverage: Underfull \hbox (badness 7221) in paragraph at lines 809--809 \T1/ptm/m/it/10 float = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age: float Underfull \hbox (badness 7595) in paragraph at lines 809--809 \T1/ptm/m/it/10 = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 drug_configs: list = Underfull \hbox (badness 10000) in paragraph at lines 809--809 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-ceiv-ing_drugs_event: Overfull \hbox (63.71327pt too wide) in paragraph at lines 809--809 \T1/ptm/m/it/10 emod_api.interventions.common.BroadcastEvent Underfull \hbox (badness 10000) in paragraph at lines 809--809 \T1/ptm/m/it/10 tsteps_btwn_repetitions: int Underfull \hbox (badness 10000) in paragraph at lines 809--809 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 BLOOD_SMEAR_PARASITES\TS1/ptm/m/it/10 '\T1/pt m/m/n/10 , Overfull \hbox (92.50304pt too wide) in paragraph at lines 809--809 \T1/ptm/m/it/10 emod_api.interventions.common.PropertyValueChanger Underfull \hbox (badness 10000) in paragraph at lines 809--809 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 809--809 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 809--809 \T1/ptm/m/it/10 list = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 809--809 \T1/ptm/m/it/10 list = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar-get_group: Underfull \hbox (badness 10000) in paragraph at lines 809--809 \T1/ptm/m/it/10 any = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Ev-ery-one\TS1/ptm/m/it /10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 trig- [17] Underfull \hbox (badness 10000) in paragraph at lines 847--854 []\T1/pcr/b/n/10 diagnostic_type \T1/ptm/m/n/10 ^^U Di-ag-nos-tic type. Avail-a ble op-tions are: * Underfull \hbox (badness 10000) in paragraph at lines 847--854 \T1/ptm/m/n/10 TRUE_INFECTION_STATUS * BLOOD_SMEAR * PCR * PF_HRP2 * [18] Underfull \hbox (badness 10000) in paragraph at lines 890--894 []\T1/pcr/b/n/10 node_property_restrictions \T1/ptm/m/n/10 ^^U List of Node-Pro p-erty key:value Underfull \hbox (badness 10000) in paragraph at lines 890--894 \T1/ptm/m/n/10 pairs that nodes must have to re-ceive the di-ag-nos-tic in-ter- ven- Underfull \hbox (badness 10000) in paragraph at lines 890--894 \T1/ptm/m/n/10 tion. For ex-am-ple, \T1/pcr/m/n/10 [{"NodeProperty1":"PropertyV alue1"}, Underfull \hbox (badness 10000) in paragraph at lines 896--900 []\T1/pcr/b/n/10 ind_property_restrictions \T1/ptm/m/n/10 ^^U List of In-di-vid -u-al-Prop-erty key:value Underfull \hbox (badness 10000) in paragraph at lines 896--900 \T1/ptm/m/n/10 pairs that in-di-vid-u-als must have to re-ceive the di-ag-nos-t ic in-ter-ven-tion. Underfull \hbox (badness 10000) in paragraph at lines 896--900 \T1/ptm/m/n/10 For ex-am-ple, \T1/pcr/m/n/10 [{"IndividualProperty1":"PropertyV alue1"}, Underfull \hbox (badness 10000) in paragraph at lines 902--906 []\T1/pcr/b/n/10 disqualifying_properties \T1/ptm/m/n/10 ^^U List of In-di-vid- u-al-Prop-erty Underfull \hbox (badness 10000) in paragraph at lines 902--906 \T1/ptm/m/n/10 key:value pairs that cause an in-ter-ven-tion to be aborted. For ex- Underfull \hbox (badness 10000) in paragraph at lines 902--906 \T1/ptm/m/n/10 am-ple, \T1/pcr/m/n/10 [{"IndividualProperty1":"PropertyValue1"} , [19] Underfull \hbox (badness 10000) in paragraph at lines 944--944 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day: int = Underfull \hbox (badness 6141) in paragraph at lines 944--944 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age: float = 1\T1/ptm/ m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 944--944 \T1/ptm/m/it/10 re-ceiv-ing_drugs_event: Overfull \hbox (75.71327pt too wide) in paragraph at lines 944--944 \T1/ptm/m/it/10 emod_api.interventions.common.BroadcastEvent Overfull \hbox (9.55446pt too wide) in paragraph at lines 944--944 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 BLOOD_SMEAR_PARASITES\TS1/ptm/m/it/10 '\T1/pt m/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 944--944 \T1/ptm/m/it/10 di-ag-nos-tic_threshold: Underfull \hbox (badness 10000) in paragraph at lines 944--944 \T1/ptm/m/it/10 float = 40\T1/ptm/m/n/10 , \T1/ptm/m/it/10 di-ag-nos- Underfull \hbox (badness 5119) in paragraph at lines 944--944 \T1/ptm/m/it/10 tic_sensitivity: float = 1\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 944--944 \T1/ptm/m/it/10 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 mea-sure-ment_sensitivity: Overfull \hbox (104.50304pt too wide) in paragraph at lines 944--944 \T1/ptm/m/it/10 emod_api.interventions.common.PropertyValueChanger Underfull \hbox (badness 10000) in paragraph at lines 944--944 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 944--944 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 944--944 \T1/ptm/m/it/10 list = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 944--944 \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 944--944 \T1/ptm/m/it/10 list = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 dis-qual-i-fy- Underfull \hbox (badness 10000) in paragraph at lines 979--986 []\T1/pcr/b/n/10 diagnostic_type \T1/ptm/m/n/10 ^^U Di-ag-nos-tic type. Avail-a ble op-tions are: * Underfull \hbox (badness 10000) in paragraph at lines 979--986 \T1/ptm/m/n/10 TRUE_INFECTION_STATUS * BLOOD_SMEAR * PCR * PF_HRP2 * [20] Underfull \hbox (badness 10000) in paragraph at lines 1025--1029 []\T1/pcr/b/n/10 node_property_restrictions \T1/ptm/m/n/10 ^^U List of Node-Pro p-erty key:value Underfull \hbox (badness 10000) in paragraph at lines 1025--1029 \T1/ptm/m/n/10 pairs that nodes must have to re-ceive the di-ag-nos-tic in-ter- ven- Underfull \hbox (badness 10000) in paragraph at lines 1025--1029 \T1/ptm/m/n/10 tion. For ex-am-ple, \T1/pcr/m/n/10 [{"NodeProperty1":"PropertyV alue1"}, Underfull \hbox (badness 10000) in paragraph at lines 1031--1035 []\T1/pcr/b/n/10 ind_property_restrictions \T1/ptm/m/n/10 ^^U List of In-di-vid -u-al-Prop-erty key:value Underfull \hbox (badness 10000) in paragraph at lines 1031--1035 \T1/ptm/m/n/10 pairs that in-di-vid-u-als must have to re-ceive the di-ag-nos-t ic in-ter-ven-tion. Underfull \hbox (badness 10000) in paragraph at lines 1031--1035 \T1/ptm/m/n/10 For ex-am-ple, \T1/pcr/m/n/10 [{"IndividualProperty1":"PropertyV alue1"}, Underfull \hbox (badness 10000) in paragraph at lines 1037--1041 []\T1/pcr/b/n/10 disqualifying_properties \T1/ptm/m/n/10 ^^U List of In-di-vid- u-al-Prop-erty Underfull \hbox (badness 10000) in paragraph at lines 1037--1041 \T1/ptm/m/n/10 key:value pairs that cause an in-ter-ven-tion to be aborted. For ex- Underfull \hbox (badness 10000) in paragraph at lines 1037--1041 \T1/ptm/m/n/10 am-ple, \T1/pcr/m/n/10 [{"IndividualProperty1":"PropertyValue1"} , Underfull \hbox (badness 10000) in paragraph at lines 1054--1054 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day: int = Underfull \hbox (badness 10000) in paragraph at lines 1054--1054 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age: float = 1\T1/ptm/ m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1054--1054 \T1/ptm/m/it/10 re-ceiv-ing_drugs_event: Overfull \hbox (69.71327pt too wide) in paragraph at lines 1054--1054 \T1/ptm/m/it/10 emod_api.interventions.common.BroadcastEvent Underfull \hbox (badness 7613) in paragraph at lines 1054--1054 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lis-ten-ing_duration: Underfull \hbox (badness 10000) in paragraph at lines 1054--1054 \T1/ptm/m/it/10 int = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 trig-ger_coverage: Underfull \hbox (badness 10000) in paragraph at lines 1054--1054 \T1/ptm/m/it/10 = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 node_selection_type: Underfull \hbox (badness 10000) in paragraph at lines 1054--1054 \T1/ptm/m/it/10 str = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 DIS-TANCE_ONLY\TS1/ptm/ m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1054--1054 \T1/ptm/m/it/10 nodeIDs: list = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1054--1054 \T1/ptm/m/it/10 ex-pire_recent_drugs: Overfull \hbox (98.50304pt too wide) in paragraph at lines 1054--1054 \T1/ptm/m/it/10 emod_api.interventions.common.PropertyValueChanger Underfull \hbox (badness 10000) in paragraph at lines 1054--1054 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1054--1054 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1054--1054 \T1/ptm/m/it/10 list = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1054--1054 \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1054--1054 \T1/ptm/m/it/10 list = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 dis-qual-i-fy- [21] [22] Underfull \hbox (badness 10000) in paragraph at lines 1121--1125 []\T1/pcr/b/n/10 node_property_restrictions \T1/ptm/m/n/10 ^^U List of Node-Pro p-erty key:value Underfull \hbox (badness 10000) in paragraph at lines 1121--1125 \T1/ptm/m/n/10 pairs that nodes must have to re-ceive the di-ag-nos-tic in-ter- ven- Underfull \hbox (badness 10000) in paragraph at lines 1121--1125 \T1/ptm/m/n/10 tion. For ex-am-ple, \T1/pcr/m/n/10 [{"NodeProperty1":"PropertyV alue1"}, Underfull \hbox (badness 10000) in paragraph at lines 1127--1131 []\T1/pcr/b/n/10 ind_property_restrictions \T1/ptm/m/n/10 ^^U List of In-di-vid -u-al-Prop-erty key:value Underfull \hbox (badness 10000) in paragraph at lines 1127--1131 \T1/ptm/m/n/10 pairs that in-di-vid-u-als must have to re-ceive the di-ag-nos-t ic in-ter-ven-tion. Underfull \hbox (badness 10000) in paragraph at lines 1127--1131 \T1/ptm/m/n/10 For ex-am-ple, \T1/pcr/m/n/10 [{"IndividualProperty1":"PropertyV alue1"}, Underfull \hbox (badness 10000) in paragraph at lines 1133--1137 []\T1/pcr/b/n/10 disqualifying_properties \T1/ptm/m/n/10 ^^U ist of In-di-vid-u -al-Prop-erty Underfull \hbox (badness 10000) in paragraph at lines 1133--1137 \T1/ptm/m/n/10 key:value pairs that cause an in-ter-ven-tion to be aborted. For ex- Underfull \hbox (badness 10000) in paragraph at lines 1133--1137 \T1/ptm/m/n/10 am-ple, \T1/pcr/m/n/10 [{"IndividualProperty1":"PropertyValue1"} , Underfull \hbox (badness 10000) in paragraph at lines 1150--1150 \T1/ptm/m/it/10 TANCE_ONLY\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ev ent_trigger: Underfull \hbox (badness 10000) in paragraph at lines 1185--1185 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov- Underfull \hbox (badness 10000) in paragraph at lines 1185--1185 \T1/ptm/m/it/10 er-age=1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 block- Underfull \hbox (badness 10000) in paragraph at lines 1185--1185 \T1/ptm/m/it/10 ing_eff=1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 killing_eff=1\T1/ptm/ m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1185--1185 \T1/ptm/m/it/10 in-sec-ti-cide=None\T1/ptm/m/n/10 , [23] Underfull \hbox (badness 10000) in paragraph at lines 1206--1206 []\T1/ptm/m/it/10 schema_path_container\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1206--1206 \T1/ptm/m/it/10 killing_effect\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day=0\T1/p tm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1206--1206 \T1/ptm/m/it/10 tar-get_coverage=1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar- Underfull \hbox (badness 10000) in paragraph at lines 1206--1206 \T1/ptm/m/it/10 get_num_individuals=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1206--1206 \T1/ptm/m/it/10 killing_duration_box=0\T1/ptm/m/n/10 , Overfull \hbox (5.29372pt too wide) in paragraph at lines 1206--1206 \T1/ptm/m/it/10 killing_exponential_decay_rate=0\T1/pcr/m/n/10 ) Overfull \hbox (19.6943pt too wide) in paragraph at lines 1240--1240 []\T1/ptm/m/it/10 schema_path_container\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1240--1240 \T1/ptm/m/it/10 killing_effect\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1240--1240 \T1/ptm/m/it/10 in-sec-ti- Underfull \hbox (badness 10000) in paragraph at lines 1240--1240 \T1/ptm/m/it/10 cide_name=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1240--1240 \T1/ptm/m/it/10 start_day=0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar- Underfull \hbox (badness 10000) in paragraph at lines 1240--1240 \T1/ptm/m/it/10 get_coverage=1.0\T1/ptm/m/n/10 , Overfull \hbox (41.63394pt too wide) in paragraph at lines 1240--1240 \T1/ptm/m/it/10 killing_predecay_duration=0\T1/ptm/m/n/10 , Overfull \hbox (10.33417pt too wide) in paragraph at lines 1240--1240 \T1/ptm/m/it/10 killing_decay_rate=0\T1/ptm/m/n/10 , [24] Underfull \hbox (badness 10000) in paragraph at lines 1277--1277 \T1/ptm/m/it/10 age=1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 killing_eff=1\T1/ptm/m/ n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1277--1277 \T1/ptm/m/it/10 in-sec-ti-cide=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 con- Underfull \hbox (badness 10000) in paragraph at lines 1277--1277 \T1/ptm/m/it/10 stant_duration=100\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1289--1289 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Overfull \hbox (3.52452pt too wide) in paragraph at lines 1289--1289 \T1/ptm/m/it/10 start_day\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1289--1289 \T1/ptm/m/it/10 file- Overfull \hbox (18.76479pt too wide) in paragraph at lines 1289--1289 \T1/ptm/m/it/10 name=None\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1298--1298 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er- Underfull \hbox (badness 10000) in paragraph at lines 1298--1298 \T1/ptm/m/it/10 age=1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 killing_eff=1\T1/ptm/m/ n/10 , \T1/ptm/m/it/10 in-sec-ti- Underfull \hbox (badness 10000) in paragraph at lines 1306--1306 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1315--1315 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day: int = 1\T1/pt m/m/n/10 , \T1/ptm/m/it/10 dis- Underfull \hbox (badness 10000) in paragraph at lines 1315--1315 \T1/ptm/m/it/10 0.0013698630136986301\T1/ptm/m/n/10 , \T1/ptm/m/it/10 killing_e ff: Underfull \hbox (badness 10000) in paragraph at lines 1315--1315 \T1/ptm/m/it/10 0.0006849315068493151\T1/ptm/m/n/10 , \T1/ptm/m/it/10 iv_name: Underfull \hbox (badness 10000) in paragraph at lines 1315--1315 \T1/ptm/m/it/10 str = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Us-ageDe-pen-dentBed-ne t\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1315--1315 \T1/ptm/m/it/10 sonal_dependence: dict = None\T1/ptm/m/n/10 , [25] [26] [27] Underfull \hbox (badness 10000) in paragraph at lines 1512--1512 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1512--1512 \T1/ptm/m/it/10 start_day\T1/ptm/m/n/10 , \T1/ptm/m/it/10 file- Underfull \hbox (badness 10000) in paragraph at lines 1527--1527 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pa-ram-e-ters: Underfull \hbox (badness 10000) in paragraph at lines 1527--1527 \T1/ptm/m/it/10 dict = \T1/ptm/m/n/10 , Underfull \hbox (badness 6348) in paragraph at lines 1527--1527 \T1/ptm/m/it/10 En-abled: bool = Underfull \hbox (badness 10000) in paragraph at lines 1567--1567 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pa-ram-e-ters: Underfull \hbox (badness 10000) in paragraph at lines 1567--1567 \T1/ptm/m/it/10 dict = \T1/ptm/m/n/10 , Underfull \hbox (badness 6348) in paragraph at lines 1567--1567 \T1/ptm/m/it/10 En-abled: bool = [28] Underfull \hbox (badness 10000) in paragraph at lines 1587--1587 []\T1/ptm/m/it/10 class_name: Underfull \hbox (badness 10000) in paragraph at lines 1587--1587 \T1/ptm/m/it/10 = \T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1587--1587 \T1/ptm/m/it/10 En-abled: Overfull \hbox (0.5943pt too wide) in paragraph at lines 1587--1587 \T1/ptm/m/it/10 Pretty_Format: Underfull \hbox (badness 10000) in paragraph at lines 1607--1607 []\T1/ptm/m/it/10 class_name: Underfull \hbox (badness 10000) in paragraph at lines 1607--1607 \T1/ptm/m/it/10 pa-ram-e- Underfull \hbox (badness 10000) in paragraph at lines 1607--1607 \T1/ptm/m/it/10 \T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1607--1607 \T1/ptm/m/it/10 En-abled: Overfull \hbox (6.5943pt too wide) in paragraph at lines 1607--1607 \T1/ptm/m/it/10 Pretty_Format: [29] [30] LaTeX Warning: Reference `emodpy_malaria:module-emodpy_malaria' on page 31 unde fined on input line 1777. 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Rerun to get cross-references right. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on institute-for-disease-modeling-emodpy-malaria.pdf (35 pages, 181753 bytes). Transcript written on institute-for-disease-modeling-emodpy-malaria.log. Latexmk: Index file 'institute-for-disease-modeling-emodpy-malaria.idx' was written Latexmk: Missing input file: 'institute-for-disease-modeling-emodpy-malaria.ind' from line 'No file institute-for-disease-modeling-emodpy-malaria.ind.' Latexmk: References changed. Latexmk: References changed. Latexmk: Log file says output to 'institute-for-disease-modeling-emodpy-malaria.pdf' Latexmk: Log file says output to 'institute-for-disease-modeling-emodpy-malaria.pdf' Latexmk: List of undefined refs and citations: Reference `emodpy_malaria.config:module-emodpy_malaria.config' on page 31 undefined on input line 1778 Reference `emodpy_malaria.demographics.MalariaDemographics:module-emodpy_malaria.demographics.MalariaDemographics' on page 31 undefined on input line 1780 Reference `emodpy_malaria.demographics:module-emodpy_malaria.demographics' on page 31 undefined on input line 1779 Reference `emodpy_malaria.interventions.bednet:module-emodpy_malaria.interventions.bednet' on page 31 undefined on input line 1782 Reference `emodpy_malaria.interventions.common:module-emodpy_malaria.interventions.common' on page 31 undefined on input line 1783 Reference `emodpy_malaria.interventions.diag_survey:module-emodpy_malaria.interventions.diag_survey' on page 31 undefined on input line 1784 Reference `emodpy_malaria.interventions.drug:module-emodpy_malaria.interventions.drug' on page 31 undefined on input line 1785 Reference `emodpy_malaria.interventions.drug_campaign:module-emodpy_malaria.interventions.drug_campaign' on page 31 undefined on input line 1786 Reference `emodpy_malaria.interventions.irs:module-emodpy_malaria.interventions.irs' on page 31 undefined on input line 1787 Reference `emodpy_malaria.interventions.ivermectin:module-emodpy_malaria.interventions.ivermectin' on page 31 undefined on input line 1788 Reference `emodpy_malaria.interventions.outdoorrestkill:module-emodpy_malaria.interventions.outdoorrestkill' on page 31 undefined on input line 1789 Reference `emodpy_malaria.interventions.spacespraying:module-emodpy_malaria.interventions.spacespraying' on page 31 undefined on input line 1790 Reference `emodpy_malaria.interventions.sugartrap:module-emodpy_malaria.interventions.sugartrap' on page 31 undefined on input line 1791 Reference `emodpy_malaria.interventions.udbednet:module-emodpy_malaria.interventions.udbednet' on page 31 undefined on input line 1792 Reference `emodpy_malaria.interventions:module-emodpy_malaria.interventions' on page 31 undefined on input line 1781 Reference `emodpy_malaria.reporters.builtin:module-emodpy_malaria.reporters.builtin' on page 31 undefined on input line 1794 Reference `emodpy_malaria.reporters:module-emodpy_malaria.reporters' on page 31 undefined on input line 1793 Reference `emodpy_malaria:module-emodpy_malaria' on page 31 undefined on input line 1777 Latexmk: Summary of warnings: Latex failed to resolve 18 reference(s) Rule 'makeindex institute-for-disease-modeling-emodpy-malaria.idx': File changes, etc: Non-existent destination files: 'institute-for-disease-modeling-emodpy-malaria.ind' ------------ Run number 1 of rule 'makeindex institute-for-disease-modeling-emodpy-malaria.idx' ------------ ------------ Running 'makeindex -s python.ist -o "institute-for-disease-modeling-emodpy-malaria.ind" "institute-for-disease-modeling-emodpy-malaria.idx"' ------------ Latexmk: applying rule 'makeindex institute-for-disease-modeling-emodpy-malaria.idx'... 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[3] [4] Chapter 2. 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\T1/ptm/m/it/10 id_ref=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 from_synth_pop\TS1/ptm /m/it/10 '\T1/pcr/m/n/10 ) [5] Underfull \hbox (badness 10000) in paragraph at lines 165--165 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age=1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 block- Underfull \hbox (badness 10000) in paragraph at lines 165--165 \T1/ptm/m/it/10 ing_eff=1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 killing_eff=1\T1/ptm/ m/n/10 , \T1/ptm/m/it/10 re-pelling_eff=1\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 165--165 \T1/ptm/m/it/10 us-age_eff=1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 block-ing_decay_ra te=0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 165--165 \T1/ptm/m/it/10 block-ing_predecay_duration=365\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 165--165 \T1/ptm/m/it/10 killing_decay_rate=0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 165--165 \T1/ptm/m/it/10 killing_predecay_duration=365\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 165--165 \T1/ptm/m/it/10 re-pelling_decay_rate=0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 165--165 \T1/ptm/m/it/10 pelling_predecay_duration=365\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 165--165 \T1/ptm/m/it/10 us-age_decay_rate=0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 us- Underfull \hbox (badness 10000) in paragraph at lines 165--165 \T1/ptm/m/it/10 age_predecay_duration=365\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 174--174 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age=1.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 174--174 \T1/ptm/m/it/10 block-ing_eff=1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 killing_eff=1\T 1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 174--174 \T1/ptm/m/it/10 pelling_eff=1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 us-age_eff=1\T1/p tm/m/n/10 , \T1/ptm/m/it/10 in-sec-ti- Underfull \hbox (badness 10000) in paragraph at lines 182--182 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 191--191 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Base_Sensitivity\T1/ptm/ m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 191--191 \T1/ptm/m/it/10 Base_Specificity\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Mea- Underfull \hbox (badness 10000) in paragraph at lines 191--191 \T1/ptm/m/it/10 sure-ment_Sensitivity\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 191--191 \T1/ptm/m/it/10 De-tec-tion_Threshold\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 191--191 \T1/ptm/m/it/10 Di-ag-nos-tic_Type\T1/ptm/m/n/10 , Overfull \hbox (31.21352pt too wide) in paragraph at lines 206--206 \T1/ptm/m/it/10 tsteps_btwn_repetitions: Underfull \hbox (badness 10000) in paragraph at lines 206--206 \T1/ptm/m/it/10 get: ob-ject Underfull \hbox (badness 10000) in paragraph at lines 206--206 \T1/ptm/m/it/10 = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Ev-ery-one\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 6364) in paragraph at lines 206--206 \T1/ptm/m/it/10 start_day: int Underfull \hbox (badness 5203) in paragraph at lines 206--206 \T1/ptm/m/it/10 = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 di-ag-nos- Overfull \hbox (63.55446pt too wide) in paragraph at lines 206--206 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 BLOOD_SMEAR_PARASITES\TS1/ptm/m/it/10 '\T1/pt m/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 206--206 \T1/ptm/m/it/10 di-ag-nos- Underfull \hbox (badness 10000) in paragraph at lines 206--206 \T1/ptm/m/it/10 tic_threshold: Underfull \hbox (badness 10000) in paragraph at lines 206--206 \T1/ptm/m/it/10 float = 40\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 206--206 \T1/ptm/m/it/10 mea-sure- Overfull \hbox (1.01384pt too wide) in paragraph at lines 206--206 \T1/ptm/m/it/10 ment_sensitivity: Underfull \hbox (badness 10000) in paragraph at lines 206--206 \T1/ptm/m/it/10 si-tiv-ity: float Underfull \hbox (badness 10000) in paragraph at lines 206--206 \T1/ptm/m/it/10 = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 speci- Underfull \hbox (badness 10000) in paragraph at lines 206--206 \T1/ptm/m/it/10 str = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Di-ag- Underfull \hbox (badness 10000) in paragraph at lines 206--206 \T1/ptm/m/it/10 nos-tic Sur-vey\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 206--206 \T1/ptm/m/it/10 nodeIDs: list Overfull \hbox (27.58405pt too wide) in paragraph at lines 206--206 \T1/ptm/m/it/10 tive_diagnosis_configs: Underfull \hbox (badness 10000) in paragraph at lines 206--206 \T1/ptm/m/it/10 list = Underfull \hbox (badness 10000) in paragraph at lines 206--206 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 neg-a- Overfull \hbox (27.58405pt too wide) in paragraph at lines 206--206 \T1/ptm/m/it/10 tive_diagnosis_configs: Overfull \hbox (6.95406pt too wide) in paragraph at lines 206--206 \T1/ptm/m/it/10 ceived_test_event: Underfull \hbox (badness 10000) in paragraph at lines 206--206 \T1/ptm/m/it/10 str = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Re- Underfull \hbox (badness 10000) in paragraph at lines 206--206 \T1/ptm/m/it/10 ceived_Test\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 206--206 \T1/ptm/m/it/10 IP_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 206--206 \T1/ptm/m/it/10 list = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 206--206 \T1/ptm/m/it/10 NP_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 206--206 \T1/ptm/m/it/10 list = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 206--206 \T1/ptm/m/it/10 dis-qual-i-fy- Underfull \hbox (badness 10000) in paragraph at lines 206--206 \T1/ptm/m/it/10 ing_properties: Overfull \hbox (9.814pt too wide) in paragraph at lines 206--206 \T1/ptm/m/it/10 ger_condition_list: Underfull \hbox (badness 10000) in paragraph at lines 206--206 \T1/ptm/m/it/10 list = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 206--206 \T1/ptm/m/it/10 lis-ten- Underfull \hbox (badness 10000) in paragraph at lines 206--206 \T1/ptm/m/it/10 ing_duration: Overfull \hbox (29.97432pt too wide) in paragraph at lines 206--206 \T1/ptm/m/it/10 gered_campaign_delay: Underfull \hbox (badness 10000) in paragraph at lines 206--206 \T1/ptm/m/it/10 int = 0\T1/ptm/m/n/10 , Overfull \hbox (47.68343pt too wide) in paragraph at lines 206--206 \T1/ptm/m/it/10 check_eligibility_at_trigger: Overfull \hbox (9.71407pt too wide) in paragraph at lines 206--206 \T1/ptm/m/it/10 pire_recent_drugs: [6] [7] [8] Underfull \hbox (badness 10000) in paragraph at lines 314--319 []\T1/pcr/b/n/10 IP_restrictions \T1/ptm/m/n/10 ^^U List of In-di-vid-u-al-Prop -erty key:value pairs that Underfull \hbox (badness 10000) in paragraph at lines 314--319 \T1/ptm/m/n/10 in-di-vid-u-als must have to re-ceive the di-ag-nos-tic in-ter-v en-tion. For Underfull \hbox (badness 10000) in paragraph at lines 314--319 \T1/ptm/m/n/10 ex-am-ple, \T1/pcr/m/n/10 [{"IndividualProperty1":"PropertyValue 1"}, Underfull \hbox (badness 10000) in paragraph at lines 321--326 []\T1/pcr/b/n/10 NP_restrictions \T1/ptm/m/n/10 ^^U List of Node-Prop-erty key: value pairs Underfull \hbox (badness 10000) in paragraph at lines 321--326 \T1/ptm/m/n/10 that nodes must have to re-ceive the di-ag-nos-tic in-ter-ven-ti on. Underfull \hbox (badness 10000) in paragraph at lines 321--326 \T1/ptm/m/n/10 For ex-am-ple, \T1/pcr/m/n/10 [{"NodeProperty1":"PropertyValue1" }, Underfull \hbox (badness 10000) in paragraph at lines 328--332 []\T1/pcr/b/n/10 disqualifying_properties \T1/ptm/m/n/10 ^^U List of In-di-vid- u-al-Prop-erty Underfull \hbox (badness 10000) in paragraph at lines 328--332 \T1/ptm/m/n/10 key:value pairs that cause an in-ter-ven-tion to be aborted. For ex- Underfull \hbox (badness 10000) in paragraph at lines 328--332 \T1/ptm/m/n/10 am-ple, \T1/pcr/m/n/10 [{"IndividualProperty1":"PropertyValue1"} , Underfull \hbox (badness 10000) in paragraph at lines 351--354 []\T1/pcr/b/n/10 expire_recent_drugs \T1/ptm/m/n/10 ^^U Adds \T1/pcr/m/n/10 [{" DrugStatus:None"}] \T1/ptm/m/n/10 to \T1/ptm/b/n/10 Prop- Underfull \hbox (badness 10000) in paragraph at lines 370--370 \T1/ptm/m/it/10 drug_name=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Chloroquine\TS1/ptm /m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 387--387 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 387--387 \T1/ptm/m/it/10 drug_code: [9] Underfull \hbox (badness 10000) in paragraph at lines 406--406 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cam- Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 paign_type: Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 str = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 MDA\TS1/ptm/m/it/10 '\T 1/ptm/m/n/10 , Underfull \hbox (badness 6775) in paragraph at lines 406--406 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_days: Overfull \hbox (19.21352pt too wide) in paragraph at lines 406--406 \T1/ptm/m/it/10 tsteps_btwn_repetitions: Underfull \hbox (badness 7344) in paragraph at lines 406--406 \T1/ptm/m/it/10 int = 60\T1/ptm/m/n/10 , \T1/ptm/m/it/10 di-ag- Overfull \hbox (51.55446pt too wide) in paragraph at lines 406--406 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 BLOOD_SMEAR_PARASITES\TS1/ptm/m/it/10 '\T1/pt m/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 di-ag-nos- Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 tic_threshold: Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 nos-tic_sensitivity: Underfull \hbox (badness 5203) in paragraph at lines 406--406 \T1/ptm/m/it/10 float = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 di-ag- Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 nos-tic_specificity: Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 ment_sensitivity: Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 float = 0.1\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 fmda_radius: Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 int = 0\T1/ptm/m/n/10 , Overfull \hbox (6.22408pt too wide) in paragraph at lines 406--406 \T1/ptm/m/it/10 node_selection_type: Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 str = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 DIS- Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 TANCE_ONLY\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 trig-ger_coverage: Underfull \hbox (badness 5667) in paragraph at lines 406--406 \T1/ptm/m/it/10 balls: int = 0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 treat-ment_delay: Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 int = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 trig- Overfull \hbox (17.97432pt too wide) in paragraph at lines 406--406 \T1/ptm/m/it/10 gered_campaign_delay: Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 list = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 tar-get_group: Overfull \hbox (33.88365pt too wide) in paragraph at lines 406--406 \T1/ptm/m/it/10 drug_ineligibility_duration: Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 int = 0\T1/ptm/m/n/10 , Overfull \hbox (33.19351pt too wide) in paragraph at lines 406--406 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 list = None\T1/ptm/m/n/10 , Overfull \hbox (26.53346pt too wide) in paragraph at lines 406--406 \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 list = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 dis-qual-i-fy- Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 ing_properties: Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 ger_condition_list: Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 ten-ing_duration: Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 ent_drug_configs: Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 get_residents_only: Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 int = 1\T1/ptm/m/n/10 , Overfull \hbox (35.68343pt too wide) in paragraph at lines 406--406 \T1/ptm/m/it/10 check_eligibility_at_trigger: Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 bool = Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 False\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-ceiv- Overfull \hbox (144.47322pt too wide) in paragraph at lines 406--406 \T1/ptm/m/it/10 ing_drugs_event_name=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Received _Campaign_Drugs\TS1/ptm/m/it/10 '\T1/pcr/m/n/10 ) [10] Overfull \vbox (28.61497pt too high) has occurred while \output is active [11] [12] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pcr.fd) Underfull \hbox (badness 10000) in paragraph at lines 535--539 []\T1/pcr/b/n/10 node_property_restrictions \T1/ptm/m/n/10 ^^U List of Node-Pro p-erty key:value Underfull \hbox (badness 10000) in paragraph at lines 535--539 \T1/ptm/m/n/10 pairs that nodes must have to re-ceive the di-ag-nos-tic in-ter- ven- Underfull \hbox (badness 10000) in paragraph at lines 535--539 \T1/ptm/m/n/10 tion. For ex-am-ple, \T1/pcr/m/n/10 [{"NodeProperty1":"PropertyV alue1"}, Underfull \hbox (badness 10000) in paragraph at lines 541--545 []\T1/pcr/b/n/10 ind_property_restrictions \T1/ptm/m/n/10 ^^U List of In-di-vid -u-al-Prop-erty key:value Underfull \hbox (badness 10000) in paragraph at lines 541--545 \T1/ptm/m/n/10 pairs that in-di-vid-u-als must have to re-ceive the di-ag-nos-t ic in-ter-ven-tion. Underfull \hbox (badness 10000) in paragraph at lines 541--545 \T1/ptm/m/n/10 For ex-am-ple, \T1/pcr/m/n/10 [{"IndividualProperty1":"PropertyV alue1"}, Underfull \hbox (badness 10000) in paragraph at lines 547--551 []\T1/pcr/b/n/10 disqualifying_properties \T1/ptm/m/n/10 ^^U List of In-di-vid- u-al-Prop-erty Underfull \hbox (badness 10000) in paragraph at lines 547--551 \T1/ptm/m/n/10 key:value pairs that cause an in-ter-ven-tion to be aborted. For ex- Underfull \hbox (badness 10000) in paragraph at lines 547--551 \T1/ptm/m/n/10 am-ple, \T1/pcr/m/n/10 [{"IndividualProperty1":"PropertyValue1"} , Underfull \hbox (badness 10000) in paragraph at lines 590--590 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_days: list = Underfull \hbox (badness 10000) in paragraph at lines 590--590 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age: float = Underfull \hbox (badness 10000) in paragraph at lines 590--590 \T1/ptm/m/it/10 1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 drug_configs: list = Underfull \hbox (badness 10000) in paragraph at lines 590--590 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-ceiv-ing_drugs_event: Overfull \hbox (57.71327pt too wide) in paragraph at lines 590--590 \T1/ptm/m/it/10 emod_api.interventions.common.BroadcastEvent Underfull \hbox (badness 10000) in paragraph at lines 590--590 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 rep-e-ti-tions: int = Underfull \hbox (badness 10000) in paragraph at lines 590--590 \T1/ptm/m/it/10 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tsteps_btwn_repetitions: Underfull \hbox (badness 7558) in paragraph at lines 590--590 \T1/ptm/m/it/10 int = 60\T1/ptm/m/n/10 , \T1/ptm/m/it/10 nodeIDs: list = Underfull \hbox (badness 10000) in paragraph at lines 590--590 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ex-pire_recent_drugs: Overfull \hbox (86.50304pt too wide) in paragraph at lines 590--590 \T1/ptm/m/it/10 emod_api.interventions.common.PropertyValueChanger Underfull \hbox (badness 10000) in paragraph at lines 590--590 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 6032) in paragraph at lines 590--590 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 590--590 \T1/ptm/m/it/10 list = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 dis-qual-i-fy- Underfull \hbox (badness 10000) in paragraph at lines 590--590 \T1/ptm/m/it/10 ing_properties: list = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 590--590 \T1/ptm/m/it/10 trig-ger_condition_list: list = [13] Underfull \hbox (badness 10000) in paragraph at lines 608--609 []\T1/pcr/b/n/10 for building, modifying, and writing campaign configuration Underfull \hbox (badness 10000) in paragraph at lines 641--645 []\T1/pcr/b/n/10 node_property_restrictions \T1/ptm/m/n/10 ^^U List of Node-Pro p-erty key:value Underfull \hbox (badness 10000) in paragraph at lines 641--645 \T1/ptm/m/n/10 pairs that nodes must have to re-ceive the di-ag-nos-tic in-ter- ven- Underfull \hbox (badness 10000) in paragraph at lines 641--645 \T1/ptm/m/n/10 tion. For ex-am-ple, \T1/pcr/m/n/10 [{"NodeProperty1":"PropertyV alue1"}, [14] Underfull \hbox (badness 10000) in paragraph at lines 647--651 []\T1/pcr/b/n/10 disqualifying_properties \T1/ptm/m/n/10 ^^U List of In-di-vid- u-al-Prop-erty Underfull \hbox (badness 10000) in paragraph at lines 647--651 \T1/ptm/m/n/10 key:value pairs that cause an in-ter-ven-tion to be aborted. For ex- Underfull \hbox (badness 10000) in paragraph at lines 647--651 \T1/ptm/m/n/10 am-ple, \T1/pcr/m/n/10 [{"IndividualProperty1":"PropertyValue1"} , Underfull \hbox (badness 10000) in paragraph at lines 691--691 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_days: list = Underfull \hbox (badness 10000) in paragraph at lines 691--691 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age: float = Underfull \hbox (badness 10000) in paragraph at lines 691--691 \T1/ptm/m/it/10 1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 drug_configs: list = Underfull \hbox (badness 10000) in paragraph at lines 691--691 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-ceiv-ing_drugs_event: Overfull \hbox (63.71327pt too wide) in paragraph at lines 691--691 \T1/ptm/m/it/10 emod_api.interventions.common.BroadcastEvent Underfull \hbox (badness 10000) in paragraph at lines 691--691 \T1/ptm/m/it/10 tsteps_btwn_repetitions: int Underfull \hbox (badness 7504) in paragraph at lines 691--691 \T1/ptm/m/it/10 = 60\T1/ptm/m/n/10 , \T1/ptm/m/it/10 treat-ment_delay: int Underfull \hbox (badness 10000) in paragraph at lines 691--691 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 BLOOD_SMEAR_PARASITES\TS1/ptm/m/it/10 '\T1/pt m/m/n/10 , Underfull \hbox (badness 7468) in paragraph at lines 691--691 \T1/ptm/m/it/10 float = 0.1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 nodeIDs: list Overfull \hbox (92.50304pt too wide) in paragraph at lines 691--691 \T1/ptm/m/it/10 emod_api.interventions.common.PropertyValueChanger Underfull \hbox (badness 10000) in paragraph at lines 691--691 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 691--691 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 691--691 \T1/ptm/m/it/10 list = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 691--691 \T1/ptm/m/it/10 list = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar-get_group: Underfull \hbox (badness 10000) in paragraph at lines 691--691 \T1/ptm/m/it/10 any = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Ev-ery-one\TS1/ptm/m/it /10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 trig- Underfull \hbox (badness 10000) in paragraph at lines 691--691 \T1/ptm/m/it/10 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 check_eligibility_at_trigger: [15] Underfull \hbox (badness 10000) in paragraph at lines 725--732 []\T1/pcr/b/n/10 diagnostic_type \T1/ptm/m/n/10 ^^U Di-ag-nos-tic type. Avail-a ble op-tions are: * Underfull \hbox (badness 10000) in paragraph at lines 725--732 \T1/ptm/m/n/10 TRUE_INFECTION_STATUS * BLOOD_SMEAR * PCR * PF_HRP2 * [16] Underfull \hbox (badness 10000) in paragraph at lines 755--759 []\T1/pcr/b/n/10 node_property_restrictions \T1/ptm/m/n/10 ^^U List of Node-Pro p-erty key:value Underfull \hbox (badness 10000) in paragraph at lines 755--759 \T1/ptm/m/n/10 pairs that nodes must have to re-ceive the di-ag-nos-tic in-ter- ven- Underfull \hbox (badness 10000) in paragraph at lines 755--759 \T1/ptm/m/n/10 tion. For ex-am-ple, \T1/pcr/m/n/10 [{"NodeProperty1":"PropertyV alue1"}, Underfull \hbox (badness 10000) in paragraph at lines 761--765 []\T1/pcr/b/n/10 ind_property_restrictions \T1/ptm/m/n/10 ^^U List of In-di-vid -u-al-Prop-erty key:value Underfull \hbox (badness 10000) in paragraph at lines 761--765 \T1/ptm/m/n/10 pairs that in-di-vid-u-als must have to re-ceive the di-ag-nos-t ic in-ter-ven-tion. Underfull \hbox (badness 10000) in paragraph at lines 761--765 \T1/ptm/m/n/10 For ex-am-ple, \T1/pcr/m/n/10 [{"IndividualProperty1":"PropertyV alue1"}, Underfull \hbox (badness 10000) in paragraph at lines 767--771 []\T1/pcr/b/n/10 disqualifying_properties \T1/ptm/m/n/10 ^^U List of In-di-vid- u-al-Prop-erty Underfull \hbox (badness 10000) in paragraph at lines 767--771 \T1/ptm/m/n/10 key:value pairs that cause an in-ter-ven-tion to be aborted. For ex- Underfull \hbox (badness 10000) in paragraph at lines 767--771 \T1/ptm/m/n/10 am-ple, \T1/pcr/m/n/10 [{"IndividualProperty1":"PropertyValue1"} , Underfull \hbox (badness 10000) in paragraph at lines 809--809 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_days: list = Underfull \hbox (badness 10000) in paragraph at lines 809--809 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 trig-ger_coverage: Underfull \hbox (badness 7221) in paragraph at lines 809--809 \T1/ptm/m/it/10 float = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age: float Underfull \hbox (badness 7595) in paragraph at lines 809--809 \T1/ptm/m/it/10 = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 drug_configs: list = Underfull \hbox (badness 10000) in paragraph at lines 809--809 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-ceiv-ing_drugs_event: Overfull \hbox (63.71327pt too wide) in paragraph at lines 809--809 \T1/ptm/m/it/10 emod_api.interventions.common.BroadcastEvent Underfull \hbox (badness 10000) in paragraph at lines 809--809 \T1/ptm/m/it/10 tsteps_btwn_repetitions: int Underfull \hbox (badness 10000) in paragraph at lines 809--809 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 BLOOD_SMEAR_PARASITES\TS1/ptm/m/it/10 '\T1/pt m/m/n/10 , Overfull \hbox (92.50304pt too wide) in paragraph at lines 809--809 \T1/ptm/m/it/10 emod_api.interventions.common.PropertyValueChanger Underfull \hbox (badness 10000) in paragraph at lines 809--809 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 809--809 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 809--809 \T1/ptm/m/it/10 list = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 809--809 \T1/ptm/m/it/10 list = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar-get_group: Underfull \hbox (badness 10000) in paragraph at lines 809--809 \T1/ptm/m/it/10 any = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Ev-ery-one\TS1/ptm/m/it /10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 trig- [17] Underfull \hbox (badness 10000) in paragraph at lines 847--854 []\T1/pcr/b/n/10 diagnostic_type \T1/ptm/m/n/10 ^^U Di-ag-nos-tic type. Avail-a ble op-tions are: * Underfull \hbox (badness 10000) in paragraph at lines 847--854 \T1/ptm/m/n/10 TRUE_INFECTION_STATUS * BLOOD_SMEAR * PCR * PF_HRP2 * [18] Underfull \hbox (badness 10000) in paragraph at lines 890--894 []\T1/pcr/b/n/10 node_property_restrictions \T1/ptm/m/n/10 ^^U List of Node-Pro p-erty key:value Underfull \hbox (badness 10000) in paragraph at lines 890--894 \T1/ptm/m/n/10 pairs that nodes must have to re-ceive the di-ag-nos-tic in-ter- ven- Underfull \hbox (badness 10000) in paragraph at lines 890--894 \T1/ptm/m/n/10 tion. For ex-am-ple, \T1/pcr/m/n/10 [{"NodeProperty1":"PropertyV alue1"}, Underfull \hbox (badness 10000) in paragraph at lines 896--900 []\T1/pcr/b/n/10 ind_property_restrictions \T1/ptm/m/n/10 ^^U List of In-di-vid -u-al-Prop-erty key:value Underfull \hbox (badness 10000) in paragraph at lines 896--900 \T1/ptm/m/n/10 pairs that in-di-vid-u-als must have to re-ceive the di-ag-nos-t ic in-ter-ven-tion. Underfull \hbox (badness 10000) in paragraph at lines 896--900 \T1/ptm/m/n/10 For ex-am-ple, \T1/pcr/m/n/10 [{"IndividualProperty1":"PropertyV alue1"}, Underfull \hbox (badness 10000) in paragraph at lines 902--906 []\T1/pcr/b/n/10 disqualifying_properties \T1/ptm/m/n/10 ^^U List of In-di-vid- u-al-Prop-erty Underfull \hbox (badness 10000) in paragraph at lines 902--906 \T1/ptm/m/n/10 key:value pairs that cause an in-ter-ven-tion to be aborted. For ex- Underfull \hbox (badness 10000) in paragraph at lines 902--906 \T1/ptm/m/n/10 am-ple, \T1/pcr/m/n/10 [{"IndividualProperty1":"PropertyValue1"} , [19] Underfull \hbox (badness 10000) in paragraph at lines 944--944 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day: int = Underfull \hbox (badness 6141) in paragraph at lines 944--944 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age: float = 1\T1/ptm/ m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 944--944 \T1/ptm/m/it/10 re-ceiv-ing_drugs_event: Overfull \hbox (75.71327pt too wide) in paragraph at lines 944--944 \T1/ptm/m/it/10 emod_api.interventions.common.BroadcastEvent Overfull \hbox (9.55446pt too wide) in paragraph at lines 944--944 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 BLOOD_SMEAR_PARASITES\TS1/ptm/m/it/10 '\T1/pt m/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 944--944 \T1/ptm/m/it/10 di-ag-nos-tic_threshold: Underfull \hbox (badness 10000) in paragraph at lines 944--944 \T1/ptm/m/it/10 float = 40\T1/ptm/m/n/10 , \T1/ptm/m/it/10 di-ag-nos- Underfull \hbox (badness 5119) in paragraph at lines 944--944 \T1/ptm/m/it/10 tic_sensitivity: float = 1\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 944--944 \T1/ptm/m/it/10 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 mea-sure-ment_sensitivity: Overfull \hbox (104.50304pt too wide) in paragraph at lines 944--944 \T1/ptm/m/it/10 emod_api.interventions.common.PropertyValueChanger Underfull \hbox (badness 10000) in paragraph at lines 944--944 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 944--944 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 944--944 \T1/ptm/m/it/10 list = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 944--944 \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 944--944 \T1/ptm/m/it/10 list = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 dis-qual-i-fy- Underfull \hbox (badness 10000) in paragraph at lines 979--986 []\T1/pcr/b/n/10 diagnostic_type \T1/ptm/m/n/10 ^^U Di-ag-nos-tic type. Avail-a ble op-tions are: * Underfull \hbox (badness 10000) in paragraph at lines 979--986 \T1/ptm/m/n/10 TRUE_INFECTION_STATUS * BLOOD_SMEAR * PCR * PF_HRP2 * [20] Underfull \hbox (badness 10000) in paragraph at lines 1025--1029 []\T1/pcr/b/n/10 node_property_restrictions \T1/ptm/m/n/10 ^^U List of Node-Pro p-erty key:value Underfull \hbox (badness 10000) in paragraph at lines 1025--1029 \T1/ptm/m/n/10 pairs that nodes must have to re-ceive the di-ag-nos-tic in-ter- ven- Underfull \hbox (badness 10000) in paragraph at lines 1025--1029 \T1/ptm/m/n/10 tion. For ex-am-ple, \T1/pcr/m/n/10 [{"NodeProperty1":"PropertyV alue1"}, Underfull \hbox (badness 10000) in paragraph at lines 1031--1035 []\T1/pcr/b/n/10 ind_property_restrictions \T1/ptm/m/n/10 ^^U List of In-di-vid -u-al-Prop-erty key:value Underfull \hbox (badness 10000) in paragraph at lines 1031--1035 \T1/ptm/m/n/10 pairs that in-di-vid-u-als must have to re-ceive the di-ag-nos-t ic in-ter-ven-tion. Underfull \hbox (badness 10000) in paragraph at lines 1031--1035 \T1/ptm/m/n/10 For ex-am-ple, \T1/pcr/m/n/10 [{"IndividualProperty1":"PropertyV alue1"}, Underfull \hbox (badness 10000) in paragraph at lines 1037--1041 []\T1/pcr/b/n/10 disqualifying_properties \T1/ptm/m/n/10 ^^U List of In-di-vid- u-al-Prop-erty Underfull \hbox (badness 10000) in paragraph at lines 1037--1041 \T1/ptm/m/n/10 key:value pairs that cause an in-ter-ven-tion to be aborted. For ex- Underfull \hbox (badness 10000) in paragraph at lines 1037--1041 \T1/ptm/m/n/10 am-ple, \T1/pcr/m/n/10 [{"IndividualProperty1":"PropertyValue1"} , Underfull \hbox (badness 10000) in paragraph at lines 1054--1054 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day: int = Underfull \hbox (badness 10000) in paragraph at lines 1054--1054 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age: float = 1\T1/ptm/ m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1054--1054 \T1/ptm/m/it/10 re-ceiv-ing_drugs_event: Overfull \hbox (69.71327pt too wide) in paragraph at lines 1054--1054 \T1/ptm/m/it/10 emod_api.interventions.common.BroadcastEvent Underfull \hbox (badness 7613) in paragraph at lines 1054--1054 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lis-ten-ing_duration: Underfull \hbox (badness 10000) in paragraph at lines 1054--1054 \T1/ptm/m/it/10 int = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 trig-ger_coverage: Underfull \hbox (badness 10000) in paragraph at lines 1054--1054 \T1/ptm/m/it/10 = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 node_selection_type: Underfull \hbox (badness 10000) in paragraph at lines 1054--1054 \T1/ptm/m/it/10 str = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 DIS-TANCE_ONLY\TS1/ptm/ m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1054--1054 \T1/ptm/m/it/10 nodeIDs: list = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1054--1054 \T1/ptm/m/it/10 ex-pire_recent_drugs: Overfull \hbox (98.50304pt too wide) in paragraph at lines 1054--1054 \T1/ptm/m/it/10 emod_api.interventions.common.PropertyValueChanger Underfull \hbox (badness 10000) in paragraph at lines 1054--1054 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1054--1054 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1054--1054 \T1/ptm/m/it/10 list = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1054--1054 \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1054--1054 \T1/ptm/m/it/10 list = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 dis-qual-i-fy- [21] [22] Underfull \hbox (badness 10000) in paragraph at lines 1121--1125 []\T1/pcr/b/n/10 node_property_restrictions \T1/ptm/m/n/10 ^^U List of Node-Pro p-erty key:value Underfull \hbox (badness 10000) in paragraph at lines 1121--1125 \T1/ptm/m/n/10 pairs that nodes must have to re-ceive the di-ag-nos-tic in-ter- ven- Underfull \hbox (badness 10000) in paragraph at lines 1121--1125 \T1/ptm/m/n/10 tion. For ex-am-ple, \T1/pcr/m/n/10 [{"NodeProperty1":"PropertyV alue1"}, Underfull \hbox (badness 10000) in paragraph at lines 1127--1131 []\T1/pcr/b/n/10 ind_property_restrictions \T1/ptm/m/n/10 ^^U List of In-di-vid -u-al-Prop-erty key:value Underfull \hbox (badness 10000) in paragraph at lines 1127--1131 \T1/ptm/m/n/10 pairs that in-di-vid-u-als must have to re-ceive the di-ag-nos-t ic in-ter-ven-tion. Underfull \hbox (badness 10000) in paragraph at lines 1127--1131 \T1/ptm/m/n/10 For ex-am-ple, \T1/pcr/m/n/10 [{"IndividualProperty1":"PropertyV alue1"}, Underfull \hbox (badness 10000) in paragraph at lines 1133--1137 []\T1/pcr/b/n/10 disqualifying_properties \T1/ptm/m/n/10 ^^U ist of In-di-vid-u -al-Prop-erty Underfull \hbox (badness 10000) in paragraph at lines 1133--1137 \T1/ptm/m/n/10 key:value pairs that cause an in-ter-ven-tion to be aborted. For ex- Underfull \hbox (badness 10000) in paragraph at lines 1133--1137 \T1/ptm/m/n/10 am-ple, \T1/pcr/m/n/10 [{"IndividualProperty1":"PropertyValue1"} , Underfull \hbox (badness 10000) in paragraph at lines 1150--1150 \T1/ptm/m/it/10 TANCE_ONLY\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ev ent_trigger: Underfull \hbox (badness 10000) in paragraph at lines 1185--1185 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov- Underfull \hbox (badness 10000) in paragraph at lines 1185--1185 \T1/ptm/m/it/10 er-age=1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 block- Underfull \hbox (badness 10000) in paragraph at lines 1185--1185 \T1/ptm/m/it/10 ing_eff=1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 killing_eff=1\T1/ptm/ m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1185--1185 \T1/ptm/m/it/10 in-sec-ti-cide=None\T1/ptm/m/n/10 , [23] Underfull \hbox (badness 10000) in paragraph at lines 1206--1206 []\T1/ptm/m/it/10 schema_path_container\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1206--1206 \T1/ptm/m/it/10 killing_effect\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day=0\T1/p tm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1206--1206 \T1/ptm/m/it/10 tar-get_coverage=1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar- Underfull \hbox (badness 10000) in paragraph at lines 1206--1206 \T1/ptm/m/it/10 get_num_individuals=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1206--1206 \T1/ptm/m/it/10 killing_duration_box=0\T1/ptm/m/n/10 , Overfull \hbox (5.29372pt too wide) in paragraph at lines 1206--1206 \T1/ptm/m/it/10 killing_exponential_decay_rate=0\T1/pcr/m/n/10 ) Overfull \hbox (19.6943pt too wide) in paragraph at lines 1240--1240 []\T1/ptm/m/it/10 schema_path_container\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1240--1240 \T1/ptm/m/it/10 killing_effect\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1240--1240 \T1/ptm/m/it/10 in-sec-ti- Underfull \hbox (badness 10000) in paragraph at lines 1240--1240 \T1/ptm/m/it/10 cide_name=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1240--1240 \T1/ptm/m/it/10 start_day=0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar- Underfull \hbox (badness 10000) in paragraph at lines 1240--1240 \T1/ptm/m/it/10 get_coverage=1.0\T1/ptm/m/n/10 , Overfull \hbox (41.63394pt too wide) in paragraph at lines 1240--1240 \T1/ptm/m/it/10 killing_predecay_duration=0\T1/ptm/m/n/10 , Overfull \hbox (10.33417pt too wide) in paragraph at lines 1240--1240 \T1/ptm/m/it/10 killing_decay_rate=0\T1/ptm/m/n/10 , [24] Underfull \hbox (badness 10000) in paragraph at lines 1277--1277 \T1/ptm/m/it/10 age=1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 killing_eff=1\T1/ptm/m/ n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1277--1277 \T1/ptm/m/it/10 in-sec-ti-cide=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 con- Underfull \hbox (badness 10000) in paragraph at lines 1277--1277 \T1/ptm/m/it/10 stant_duration=100\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1289--1289 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Overfull \hbox (3.52452pt too wide) in paragraph at lines 1289--1289 \T1/ptm/m/it/10 start_day\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1289--1289 \T1/ptm/m/it/10 file- Overfull \hbox (18.76479pt too wide) in paragraph at lines 1289--1289 \T1/ptm/m/it/10 name=None\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1298--1298 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er- Underfull \hbox (badness 10000) in paragraph at lines 1298--1298 \T1/ptm/m/it/10 age=1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 killing_eff=1\T1/ptm/m/ n/10 , \T1/ptm/m/it/10 in-sec-ti- Underfull \hbox (badness 10000) in paragraph at lines 1306--1306 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1315--1315 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day: int = 1\T1/pt m/m/n/10 , \T1/ptm/m/it/10 dis- Underfull \hbox (badness 10000) in paragraph at lines 1315--1315 \T1/ptm/m/it/10 0.0013698630136986301\T1/ptm/m/n/10 , \T1/ptm/m/it/10 killing_e ff: Underfull \hbox (badness 10000) in paragraph at lines 1315--1315 \T1/ptm/m/it/10 0.0006849315068493151\T1/ptm/m/n/10 , \T1/ptm/m/it/10 iv_name: Underfull \hbox (badness 10000) in paragraph at lines 1315--1315 \T1/ptm/m/it/10 str = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Us-ageDe-pen-dentBed-ne t\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1315--1315 \T1/ptm/m/it/10 sonal_dependence: dict = None\T1/ptm/m/n/10 , [25] [26] [27] Underfull \hbox (badness 10000) in paragraph at lines 1512--1512 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1512--1512 \T1/ptm/m/it/10 start_day\T1/ptm/m/n/10 , \T1/ptm/m/it/10 file- Underfull \hbox (badness 10000) in paragraph at lines 1527--1527 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pa-ram-e-ters: Underfull \hbox (badness 10000) in paragraph at lines 1527--1527 \T1/ptm/m/it/10 dict = \T1/ptm/m/n/10 , Underfull \hbox (badness 6348) in paragraph at lines 1527--1527 \T1/ptm/m/it/10 En-abled: bool = Underfull \hbox (badness 10000) in paragraph at lines 1567--1567 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pa-ram-e-ters: Underfull \hbox (badness 10000) in paragraph at lines 1567--1567 \T1/ptm/m/it/10 dict = \T1/ptm/m/n/10 , Underfull \hbox (badness 6348) in paragraph at lines 1567--1567 \T1/ptm/m/it/10 En-abled: bool = [28] Underfull \hbox (badness 10000) in paragraph at lines 1587--1587 []\T1/ptm/m/it/10 class_name: Underfull \hbox (badness 10000) in paragraph at lines 1587--1587 \T1/ptm/m/it/10 = \T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1587--1587 \T1/ptm/m/it/10 En-abled: Overfull \hbox (0.5943pt too wide) in paragraph at lines 1587--1587 \T1/ptm/m/it/10 Pretty_Format: Underfull \hbox (badness 10000) in paragraph at lines 1607--1607 []\T1/ptm/m/it/10 class_name: Underfull \hbox (badness 10000) in paragraph at lines 1607--1607 \T1/ptm/m/it/10 pa-ram-e- Underfull \hbox (badness 10000) in paragraph at lines 1607--1607 \T1/ptm/m/it/10 \T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1607--1607 \T1/ptm/m/it/10 En-abled: Overfull \hbox (6.5943pt too wide) in paragraph at lines 1607--1607 \T1/ptm/m/it/10 Pretty_Format: [29] [30] Overfull \hbox (54.6225pt too wide) in paragraph at lines 1780--1781 []\T1/pcr/m/n/10 emodpy_malaria.demographics.MalariaDemographics\T1/ptm/m/n/10 , Overfull \hbox (12.6225pt too wide) in paragraph at lines 1784--1785 []\T1/pcr/m/n/10 emodpy_malaria.interventions.diag_survey\T1/ptm/m/n/10 , Overfull \hbox (24.6225pt too wide) in paragraph at lines 1786--1787 []\T1/pcr/m/n/10 emodpy_malaria.interventions.drug_campaign\T1/ptm/m/n/10 , Overfull \hbox (6.6225pt too wide) in paragraph at lines 1788--1789 []\T1/pcr/m/n/10 emodpy_malaria.interventions.ivermectin\T1/ptm/m/n/10 , Overfull \hbox (36.6225pt too wide) in paragraph at lines 1789--1790 []\T1/pcr/m/n/10 emodpy_malaria.interventions.outdoorrestkill\T1/ptm/m/n/10 , Overfull \hbox (24.6225pt too wide) in paragraph at lines 1790--1791 []\T1/pcr/m/n/10 emodpy_malaria.interventions.spacespraying\T1/ptm/m/n/10 , Overfull \hbox (0.6225pt too wide) in paragraph at lines 1791--1792 []\T1/pcr/m/n/10 emodpy_malaria.interventions.sugartrap\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1792--1793 []\T1/pcr/m/n/10 emodpy_malaria.interventions.udbednet\T1/ptm/m/n/10 , [31] (./institute-for-disease-modeling-emodpy-malaria.ind [32] Underfull \hbox (badness 10000) in paragraph at lines 9--11 []\T1/pcr/m/n/10 add_diagnostic_survey() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod -ule Underfull \hbox (badness 10000) in paragraph at lines 11--13 []\T1/pcr/m/n/10 add_drug_campaign() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 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10000) in paragraph at lines 19--20 []\T1/pcr/m/n/10 add_mutation() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 20--21 []\T1/pcr/m/n/10 add_resistance() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 21--23 []\T1/pcr/m/n/10 add_rfMDA() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (4.27083pt too wide) in paragraph at lines 21--23 \T1/ptm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 23--25 []\T1/pcr/m/n/10 add_rfMSAT() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (4.27083pt too wide) in paragraph at lines 23--25 \T1/ptm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 26--28 []\T1/pcr/m/n/10 AntiMalarialDrug() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 26--28 \T1/ptm/m/it/10 emodpy_malaria.interventions.common\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 28--30 []\T1/pcr/m/n/10 AntiMalarialDrug() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 33--35 []\T1/pcr/m/n/10 BabyBednet() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 35--36 []\T1/pcr/m/n/10 Bednet() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (72.70978pt too wide) in paragraph at lines 39--41 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.MalariaPatientJSONReport Overfull \hbox (59.06006pt too wide) in paragraph at lines 41--43 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.MalariaSummaryReport Overfull \hbox (74.48972pt too wide) in paragraph at lines 43--45 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.MalariaTransmissionReport Overfull \hbox (49.04977pt too wide) in paragraph at lines 45--47 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.ReportVectorGenetics Overfull \hbox (33.50998pt too wide) in paragraph at lines 47--49 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.ReportVectorStats Underfull \hbox (badness 10000) in paragraph at lines 52--54 []\T1/pcr/m/n/10 drug_configs_from_code() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule Overfull \hbox (4.27083pt too wide) in paragraph at lines 52--54 \T1/ptm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/ptm/m/n/10 ), Overfull \hbox (52.1225pt too wide) in paragraph at lines 63--64 []\T1/pcr/m/n/10 emodpy_malaria.demographics.MalariaDemographics Overfull \hbox (10.1225pt too wide) in paragraph at lines 71--72 []\T1/pcr/m/n/10 emodpy_malaria.interventions.diag_survey Overfull \hbox (22.1225pt too wide) in paragraph at lines 75--76 []\T1/pcr/m/n/10 emodpy_malaria.interventions.drug_campaign Overfull \hbox (4.1225pt too wide) in paragraph at lines 79--80 []\T1/pcr/m/n/10 emodpy_malaria.interventions.ivermectin Overfull \hbox (34.1225pt too wide) in paragraph at lines 81--82 []\T1/pcr/m/n/10 emodpy_malaria.interventions.outdoorrestkill Overfull \hbox (22.1225pt too wide) in paragraph at lines 83--84 []\T1/pcr/m/n/10 emodpy_malaria.interventions.spacespraying [33] Underfull \hbox (badness 10000) in paragraph at lines 96--98 []\T1/pcr/m/n/10 fmda_cfg() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (4.27083pt too wide) in paragraph at lines 96--98 \T1/ptm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 98--100 []\T1/pcr/m/n/10 from_pop_csv() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (36.54083pt too wide) in paragraph at lines 98--100 \T1/ptm/m/it/10 emodpy_malaria.demographics.MalariaDemographics\T1/ptm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 100--102 []\T1/pcr/m/n/10 from_synth_pop() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (36.54083pt too wide) in paragraph at lines 100--102 \T1/ptm/m/it/10 emodpy_malaria.demographics.MalariaDemographics\T1/ptm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 102--104 []\T1/pcr/m/n/10 fromBasicNode() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (36.54083pt too wide) in paragraph at lines 102--104 \T1/ptm/m/it/10 emodpy_malaria.demographics.MalariaDemographics\T1/ptm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 107--108 []\T1/pcr/m/n/10 get_drug_params() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 108--110 []\T1/pcr/m/n/10 get_file_from_http() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 110--112 []\T1/pcr/m/n/10 get_species_params() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 115--117 []\T1/pcr/m/n/10 IRSHousingModification() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 117--119 []\T1/pcr/m/n/10 Ivermectin() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 117--119 \T1/ptm/m/it/10 emodpy_malaria.interventions.ivermectin\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 122--124 []\T1/pcr/m/n/10 MalariaDemographics \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Overfull \hbox (36.54083pt too wide) in paragraph at lines 122--124 \T1/ptm/m/it/10 emodpy_malaria.demographics.MalariaDemographics\T1/ptm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 124--126 []\T1/pcr/m/n/10 MalariaDiagnostic() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 124--126 \T1/ptm/m/it/10 emodpy_malaria.interventions.common\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 126--128 []\T1/pcr/m/n/10 MalariaPatientJSONReport \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 128--130 []\T1/pcr/m/n/10 MalariaSummaryReport \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 130--132 []\T1/pcr/m/n/10 MalariaTransmissionReport \T1/ptm/m/n/10 (\T1/ptm/m/it/10 clas s in Overfull \hbox (74.6225pt too wide) in paragraph at lines 136--137 []| \T1/pcr/m/n/10 emodpy_malaria.demographics.MalariaDemographics\T1/ptm/m/n/1 0 , Overfull \hbox (2.6225pt too wide) in paragraph at lines 138--139 []| \T1/pcr/m/n/10 emodpy_malaria.interventions.bednet\T1/ptm/m/n/10 , Overfull \hbox (2.6225pt too wide) in paragraph at lines 139--140 []| \T1/pcr/m/n/10 emodpy_malaria.interventions.common\T1/ptm/m/n/10 , Overfull \hbox (32.6225pt too wide) in paragraph at lines 140--141 []| \T1/pcr/m/n/10 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[3] [4] Chapter 2. 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lines 174--174 \T1/ptm/m/it/10 pelling_eff=1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 us-age_eff=1\T1/p tm/m/n/10 , \T1/ptm/m/it/10 in-sec-ti- Underfull \hbox (badness 10000) in paragraph at lines 182--182 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 191--191 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Base_Sensitivity\T1/ptm/ m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 191--191 \T1/ptm/m/it/10 Base_Specificity\T1/ptm/m/n/10 , \T1/ptm/m/it/10 Mea- Underfull \hbox (badness 10000) in paragraph at lines 191--191 \T1/ptm/m/it/10 sure-ment_Sensitivity\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 191--191 \T1/ptm/m/it/10 De-tec-tion_Threshold\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 191--191 \T1/ptm/m/it/10 Di-ag-nos-tic_Type\T1/ptm/m/n/10 , Overfull \hbox (31.21352pt too wide) in paragraph at lines 206--206 \T1/ptm/m/it/10 tsteps_btwn_repetitions: Underfull \hbox (badness 10000) in paragraph at lines 206--206 \T1/ptm/m/it/10 get: ob-ject Underfull \hbox (badness 10000) in paragraph at lines 206--206 \T1/ptm/m/it/10 = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Ev-ery-one\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 6364) in paragraph at lines 206--206 \T1/ptm/m/it/10 start_day: int Underfull \hbox (badness 5203) in paragraph at lines 206--206 \T1/ptm/m/it/10 = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 di-ag-nos- Overfull \hbox (63.55446pt too wide) in paragraph at lines 206--206 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 BLOOD_SMEAR_PARASITES\TS1/ptm/m/it/10 '\T1/pt m/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 206--206 \T1/ptm/m/it/10 di-ag-nos- Underfull \hbox (badness 10000) in paragraph at lines 206--206 \T1/ptm/m/it/10 tic_threshold: Underfull \hbox (badness 10000) in paragraph at lines 206--206 \T1/ptm/m/it/10 float = 40\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 206--206 \T1/ptm/m/it/10 mea-sure- Overfull \hbox (1.01384pt too wide) in paragraph at lines 206--206 \T1/ptm/m/it/10 ment_sensitivity: Underfull \hbox (badness 10000) in paragraph at lines 206--206 \T1/ptm/m/it/10 si-tiv-ity: float Underfull \hbox (badness 10000) in paragraph at lines 206--206 \T1/ptm/m/it/10 = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 speci- Underfull \hbox (badness 10000) in paragraph at lines 206--206 \T1/ptm/m/it/10 str = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Di-ag- Underfull \hbox (badness 10000) in paragraph at lines 206--206 \T1/ptm/m/it/10 nos-tic Sur-vey\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 206--206 \T1/ptm/m/it/10 nodeIDs: list Overfull \hbox (27.58405pt too wide) in paragraph at lines 206--206 \T1/ptm/m/it/10 tive_diagnosis_configs: Underfull \hbox (badness 10000) in paragraph at lines 206--206 \T1/ptm/m/it/10 list = Underfull \hbox (badness 10000) in paragraph at lines 206--206 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 neg-a- Overfull \hbox (27.58405pt too wide) in paragraph at lines 206--206 \T1/ptm/m/it/10 tive_diagnosis_configs: Overfull \hbox (6.95406pt too wide) in paragraph at lines 206--206 \T1/ptm/m/it/10 ceived_test_event: Underfull \hbox (badness 10000) in paragraph at lines 206--206 \T1/ptm/m/it/10 str = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Re- Underfull \hbox (badness 10000) in paragraph at lines 206--206 \T1/ptm/m/it/10 ceived_Test\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 206--206 \T1/ptm/m/it/10 IP_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 206--206 \T1/ptm/m/it/10 list = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 206--206 \T1/ptm/m/it/10 NP_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 206--206 \T1/ptm/m/it/10 list = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 206--206 \T1/ptm/m/it/10 dis-qual-i-fy- Underfull \hbox (badness 10000) in paragraph at lines 206--206 \T1/ptm/m/it/10 ing_properties: Overfull \hbox (9.814pt too wide) in paragraph at lines 206--206 \T1/ptm/m/it/10 ger_condition_list: Underfull \hbox (badness 10000) in paragraph at lines 206--206 \T1/ptm/m/it/10 list = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 206--206 \T1/ptm/m/it/10 lis-ten- Underfull \hbox (badness 10000) in paragraph at lines 206--206 \T1/ptm/m/it/10 ing_duration: Overfull \hbox (29.97432pt too wide) in paragraph at lines 206--206 \T1/ptm/m/it/10 gered_campaign_delay: Underfull \hbox (badness 10000) in paragraph at lines 206--206 \T1/ptm/m/it/10 int = 0\T1/ptm/m/n/10 , Overfull \hbox (47.68343pt too wide) in paragraph at lines 206--206 \T1/ptm/m/it/10 check_eligibility_at_trigger: Overfull \hbox (9.71407pt too wide) in paragraph at lines 206--206 \T1/ptm/m/it/10 pire_recent_drugs: [6] [7] [8] Underfull \hbox (badness 10000) in paragraph at lines 314--319 []\T1/pcr/b/n/10 IP_restrictions \T1/ptm/m/n/10 ^^U List of In-di-vid-u-al-Prop -erty key:value pairs that Underfull \hbox (badness 10000) in paragraph at lines 314--319 \T1/ptm/m/n/10 in-di-vid-u-als must have to re-ceive the di-ag-nos-tic in-ter-v en-tion. For Underfull \hbox (badness 10000) in paragraph at lines 314--319 \T1/ptm/m/n/10 ex-am-ple, \T1/pcr/m/n/10 [{"IndividualProperty1":"PropertyValue 1"}, Underfull \hbox (badness 10000) in paragraph at lines 321--326 []\T1/pcr/b/n/10 NP_restrictions \T1/ptm/m/n/10 ^^U List of Node-Prop-erty key: value pairs Underfull \hbox (badness 10000) in paragraph at lines 321--326 \T1/ptm/m/n/10 that nodes must have to re-ceive the di-ag-nos-tic in-ter-ven-ti on. Underfull \hbox (badness 10000) in paragraph at lines 321--326 \T1/ptm/m/n/10 For ex-am-ple, \T1/pcr/m/n/10 [{"NodeProperty1":"PropertyValue1" }, Underfull \hbox (badness 10000) in paragraph at lines 328--332 []\T1/pcr/b/n/10 disqualifying_properties \T1/ptm/m/n/10 ^^U List of In-di-vid- u-al-Prop-erty Underfull \hbox (badness 10000) in paragraph at lines 328--332 \T1/ptm/m/n/10 key:value pairs that cause an in-ter-ven-tion to be aborted. For ex- Underfull \hbox (badness 10000) in paragraph at lines 328--332 \T1/ptm/m/n/10 am-ple, \T1/pcr/m/n/10 [{"IndividualProperty1":"PropertyValue1"} , Underfull \hbox (badness 10000) in paragraph at lines 351--354 []\T1/pcr/b/n/10 expire_recent_drugs \T1/ptm/m/n/10 ^^U Adds \T1/pcr/m/n/10 [{" DrugStatus:None"}] \T1/ptm/m/n/10 to \T1/ptm/b/n/10 Prop- Underfull \hbox (badness 10000) in paragraph at lines 370--370 \T1/ptm/m/it/10 drug_name=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Chloroquine\TS1/ptm /m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 387--387 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 387--387 \T1/ptm/m/it/10 drug_code: [9] Underfull \hbox (badness 10000) in paragraph at lines 406--406 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cam- Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 paign_type: Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 str = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 MDA\TS1/ptm/m/it/10 '\T 1/ptm/m/n/10 , Underfull \hbox (badness 6775) in paragraph at lines 406--406 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_days: Overfull \hbox (19.21352pt too wide) in paragraph at lines 406--406 \T1/ptm/m/it/10 tsteps_btwn_repetitions: Underfull \hbox (badness 7344) in paragraph at lines 406--406 \T1/ptm/m/it/10 int = 60\T1/ptm/m/n/10 , \T1/ptm/m/it/10 di-ag- Overfull \hbox (51.55446pt too wide) in paragraph at lines 406--406 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 BLOOD_SMEAR_PARASITES\TS1/ptm/m/it/10 '\T1/pt m/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 di-ag-nos- Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 tic_threshold: Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 nos-tic_sensitivity: Underfull \hbox (badness 5203) in paragraph at lines 406--406 \T1/ptm/m/it/10 float = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 di-ag- Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 nos-tic_specificity: Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 ment_sensitivity: Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 float = 0.1\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 fmda_radius: Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 int = 0\T1/ptm/m/n/10 , Overfull \hbox (6.22408pt too wide) in paragraph at lines 406--406 \T1/ptm/m/it/10 node_selection_type: Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 str = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 DIS- Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 TANCE_ONLY\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 trig-ger_coverage: Underfull \hbox (badness 5667) in paragraph at lines 406--406 \T1/ptm/m/it/10 balls: int = 0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 treat-ment_delay: Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 int = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 trig- Overfull \hbox (17.97432pt too wide) in paragraph at lines 406--406 \T1/ptm/m/it/10 gered_campaign_delay: Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 list = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 tar-get_group: Overfull \hbox (33.88365pt too wide) in paragraph at lines 406--406 \T1/ptm/m/it/10 drug_ineligibility_duration: Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 int = 0\T1/ptm/m/n/10 , Overfull \hbox (33.19351pt too wide) in paragraph at lines 406--406 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 list = None\T1/ptm/m/n/10 , Overfull \hbox (26.53346pt too wide) in paragraph at lines 406--406 \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 list = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 dis-qual-i-fy- Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 ing_properties: Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 ger_condition_list: Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 ten-ing_duration: Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 ent_drug_configs: Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 get_residents_only: Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 int = 1\T1/ptm/m/n/10 , Overfull \hbox (35.68343pt too wide) in paragraph at lines 406--406 \T1/ptm/m/it/10 check_eligibility_at_trigger: Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 bool = Underfull \hbox (badness 10000) in paragraph at lines 406--406 \T1/ptm/m/it/10 False\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-ceiv- Overfull \hbox (144.47322pt too wide) in paragraph at lines 406--406 \T1/ptm/m/it/10 ing_drugs_event_name=\TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Received _Campaign_Drugs\TS1/ptm/m/it/10 '\T1/pcr/m/n/10 ) [10] Overfull \vbox (28.61497pt too high) has occurred while \output is active [11] [12] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pcr.fd) Underfull \hbox (badness 10000) in paragraph at lines 535--539 []\T1/pcr/b/n/10 node_property_restrictions \T1/ptm/m/n/10 ^^U List of Node-Pro p-erty key:value Underfull \hbox (badness 10000) in paragraph at lines 535--539 \T1/ptm/m/n/10 pairs that nodes must have to re-ceive the di-ag-nos-tic in-ter- ven- Underfull \hbox (badness 10000) in paragraph at lines 535--539 \T1/ptm/m/n/10 tion. For ex-am-ple, \T1/pcr/m/n/10 [{"NodeProperty1":"PropertyV alue1"}, Underfull \hbox (badness 10000) in paragraph at lines 541--545 []\T1/pcr/b/n/10 ind_property_restrictions \T1/ptm/m/n/10 ^^U List of In-di-vid -u-al-Prop-erty key:value Underfull \hbox (badness 10000) in paragraph at lines 541--545 \T1/ptm/m/n/10 pairs that in-di-vid-u-als must have to re-ceive the di-ag-nos-t ic in-ter-ven-tion. Underfull \hbox (badness 10000) in paragraph at lines 541--545 \T1/ptm/m/n/10 For ex-am-ple, \T1/pcr/m/n/10 [{"IndividualProperty1":"PropertyV alue1"}, Underfull \hbox (badness 10000) in paragraph at lines 547--551 []\T1/pcr/b/n/10 disqualifying_properties \T1/ptm/m/n/10 ^^U List of In-di-vid- u-al-Prop-erty Underfull \hbox (badness 10000) in paragraph at lines 547--551 \T1/ptm/m/n/10 key:value pairs that cause an in-ter-ven-tion to be aborted. For ex- Underfull \hbox (badness 10000) in paragraph at lines 547--551 \T1/ptm/m/n/10 am-ple, \T1/pcr/m/n/10 [{"IndividualProperty1":"PropertyValue1"} , Underfull \hbox (badness 10000) in paragraph at lines 590--590 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_days: list = Underfull \hbox (badness 10000) in paragraph at lines 590--590 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age: float = Underfull \hbox (badness 10000) in paragraph at lines 590--590 \T1/ptm/m/it/10 1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 drug_configs: list = Underfull \hbox (badness 10000) in paragraph at lines 590--590 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-ceiv-ing_drugs_event: Overfull \hbox (57.71327pt too wide) in paragraph at lines 590--590 \T1/ptm/m/it/10 emod_api.interventions.common.BroadcastEvent Underfull \hbox (badness 10000) in paragraph at lines 590--590 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 rep-e-ti-tions: int = Underfull \hbox (badness 10000) in paragraph at lines 590--590 \T1/ptm/m/it/10 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tsteps_btwn_repetitions: Underfull \hbox (badness 7558) in paragraph at lines 590--590 \T1/ptm/m/it/10 int = 60\T1/ptm/m/n/10 , \T1/ptm/m/it/10 nodeIDs: list = Underfull \hbox (badness 10000) in paragraph at lines 590--590 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ex-pire_recent_drugs: Overfull \hbox (86.50304pt too wide) in paragraph at lines 590--590 \T1/ptm/m/it/10 emod_api.interventions.common.PropertyValueChanger Underfull \hbox (badness 10000) in paragraph at lines 590--590 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 6032) in paragraph at lines 590--590 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 590--590 \T1/ptm/m/it/10 list = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 dis-qual-i-fy- Underfull \hbox (badness 10000) in paragraph at lines 590--590 \T1/ptm/m/it/10 ing_properties: list = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 590--590 \T1/ptm/m/it/10 trig-ger_condition_list: list = [13] Underfull \hbox (badness 10000) in paragraph at lines 608--609 []\T1/pcr/b/n/10 for building, modifying, and writing campaign configuration Underfull \hbox (badness 10000) in paragraph at lines 641--645 []\T1/pcr/b/n/10 node_property_restrictions \T1/ptm/m/n/10 ^^U List of Node-Pro p-erty key:value Underfull \hbox (badness 10000) in paragraph at lines 641--645 \T1/ptm/m/n/10 pairs that nodes must have to re-ceive the di-ag-nos-tic in-ter- ven- Underfull \hbox (badness 10000) in paragraph at lines 641--645 \T1/ptm/m/n/10 tion. For ex-am-ple, \T1/pcr/m/n/10 [{"NodeProperty1":"PropertyV alue1"}, [14] Underfull \hbox (badness 10000) in paragraph at lines 647--651 []\T1/pcr/b/n/10 disqualifying_properties \T1/ptm/m/n/10 ^^U List of In-di-vid- u-al-Prop-erty Underfull \hbox (badness 10000) in paragraph at lines 647--651 \T1/ptm/m/n/10 key:value pairs that cause an in-ter-ven-tion to be aborted. For ex- Underfull \hbox (badness 10000) in paragraph at lines 647--651 \T1/ptm/m/n/10 am-ple, \T1/pcr/m/n/10 [{"IndividualProperty1":"PropertyValue1"} , Underfull \hbox (badness 10000) in paragraph at lines 691--691 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_days: list = Underfull \hbox (badness 10000) in paragraph at lines 691--691 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age: float = Underfull \hbox (badness 10000) in paragraph at lines 691--691 \T1/ptm/m/it/10 1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 drug_configs: list = Underfull \hbox (badness 10000) in paragraph at lines 691--691 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-ceiv-ing_drugs_event: Overfull \hbox (63.71327pt too wide) in paragraph at lines 691--691 \T1/ptm/m/it/10 emod_api.interventions.common.BroadcastEvent Underfull \hbox (badness 10000) in paragraph at lines 691--691 \T1/ptm/m/it/10 tsteps_btwn_repetitions: int Underfull \hbox (badness 7504) in paragraph at lines 691--691 \T1/ptm/m/it/10 = 60\T1/ptm/m/n/10 , \T1/ptm/m/it/10 treat-ment_delay: int Underfull \hbox (badness 10000) in paragraph at lines 691--691 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 BLOOD_SMEAR_PARASITES\TS1/ptm/m/it/10 '\T1/pt m/m/n/10 , Underfull \hbox (badness 7468) in paragraph at lines 691--691 \T1/ptm/m/it/10 float = 0.1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 nodeIDs: list Overfull \hbox (92.50304pt too wide) in paragraph at lines 691--691 \T1/ptm/m/it/10 emod_api.interventions.common.PropertyValueChanger Underfull \hbox (badness 10000) in paragraph at lines 691--691 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 691--691 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 691--691 \T1/ptm/m/it/10 list = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 691--691 \T1/ptm/m/it/10 list = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar-get_group: Underfull \hbox (badness 10000) in paragraph at lines 691--691 \T1/ptm/m/it/10 any = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Ev-ery-one\TS1/ptm/m/it /10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 trig- Underfull \hbox (badness 10000) in paragraph at lines 691--691 \T1/ptm/m/it/10 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 check_eligibility_at_trigger: [15] Underfull \hbox (badness 10000) in paragraph at lines 725--732 []\T1/pcr/b/n/10 diagnostic_type \T1/ptm/m/n/10 ^^U Di-ag-nos-tic type. Avail-a ble op-tions are: * Underfull \hbox (badness 10000) in paragraph at lines 725--732 \T1/ptm/m/n/10 TRUE_INFECTION_STATUS * BLOOD_SMEAR * PCR * PF_HRP2 * [16] Underfull \hbox (badness 10000) in paragraph at lines 755--759 []\T1/pcr/b/n/10 node_property_restrictions \T1/ptm/m/n/10 ^^U List of Node-Pro p-erty key:value Underfull \hbox (badness 10000) in paragraph at lines 755--759 \T1/ptm/m/n/10 pairs that nodes must have to re-ceive the di-ag-nos-tic in-ter- ven- Underfull \hbox (badness 10000) in paragraph at lines 755--759 \T1/ptm/m/n/10 tion. For ex-am-ple, \T1/pcr/m/n/10 [{"NodeProperty1":"PropertyV alue1"}, Underfull \hbox (badness 10000) in paragraph at lines 761--765 []\T1/pcr/b/n/10 ind_property_restrictions \T1/ptm/m/n/10 ^^U List of In-di-vid -u-al-Prop-erty key:value Underfull \hbox (badness 10000) in paragraph at lines 761--765 \T1/ptm/m/n/10 pairs that in-di-vid-u-als must have to re-ceive the di-ag-nos-t ic in-ter-ven-tion. Underfull \hbox (badness 10000) in paragraph at lines 761--765 \T1/ptm/m/n/10 For ex-am-ple, \T1/pcr/m/n/10 [{"IndividualProperty1":"PropertyV alue1"}, Underfull \hbox (badness 10000) in paragraph at lines 767--771 []\T1/pcr/b/n/10 disqualifying_properties \T1/ptm/m/n/10 ^^U List of In-di-vid- u-al-Prop-erty Underfull \hbox (badness 10000) in paragraph at lines 767--771 \T1/ptm/m/n/10 key:value pairs that cause an in-ter-ven-tion to be aborted. For ex- Underfull \hbox (badness 10000) in paragraph at lines 767--771 \T1/ptm/m/n/10 am-ple, \T1/pcr/m/n/10 [{"IndividualProperty1":"PropertyValue1"} , Underfull \hbox (badness 10000) in paragraph at lines 809--809 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_days: list = Underfull \hbox (badness 10000) in paragraph at lines 809--809 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 trig-ger_coverage: Underfull \hbox (badness 7221) in paragraph at lines 809--809 \T1/ptm/m/it/10 float = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age: float Underfull \hbox (badness 7595) in paragraph at lines 809--809 \T1/ptm/m/it/10 = 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 drug_configs: list = Underfull \hbox (badness 10000) in paragraph at lines 809--809 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re-ceiv-ing_drugs_event: Overfull \hbox (63.71327pt too wide) in paragraph at lines 809--809 \T1/ptm/m/it/10 emod_api.interventions.common.BroadcastEvent Underfull \hbox (badness 10000) in paragraph at lines 809--809 \T1/ptm/m/it/10 tsteps_btwn_repetitions: int Underfull \hbox (badness 10000) in paragraph at lines 809--809 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 BLOOD_SMEAR_PARASITES\TS1/ptm/m/it/10 '\T1/pt m/m/n/10 , Overfull \hbox (92.50304pt too wide) in paragraph at lines 809--809 \T1/ptm/m/it/10 emod_api.interventions.common.PropertyValueChanger Underfull \hbox (badness 10000) in paragraph at lines 809--809 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 809--809 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 809--809 \T1/ptm/m/it/10 list = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 809--809 \T1/ptm/m/it/10 list = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar-get_group: Underfull \hbox (badness 10000) in paragraph at lines 809--809 \T1/ptm/m/it/10 any = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Ev-ery-one\TS1/ptm/m/it /10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 trig- [17] Underfull \hbox (badness 10000) in paragraph at lines 847--854 []\T1/pcr/b/n/10 diagnostic_type \T1/ptm/m/n/10 ^^U Di-ag-nos-tic type. Avail-a ble op-tions are: * Underfull \hbox (badness 10000) in paragraph at lines 847--854 \T1/ptm/m/n/10 TRUE_INFECTION_STATUS * BLOOD_SMEAR * PCR * PF_HRP2 * [18] Underfull \hbox (badness 10000) in paragraph at lines 890--894 []\T1/pcr/b/n/10 node_property_restrictions \T1/ptm/m/n/10 ^^U List of Node-Pro p-erty key:value Underfull \hbox (badness 10000) in paragraph at lines 890--894 \T1/ptm/m/n/10 pairs that nodes must have to re-ceive the di-ag-nos-tic in-ter- ven- Underfull \hbox (badness 10000) in paragraph at lines 890--894 \T1/ptm/m/n/10 tion. For ex-am-ple, \T1/pcr/m/n/10 [{"NodeProperty1":"PropertyV alue1"}, Underfull \hbox (badness 10000) in paragraph at lines 896--900 []\T1/pcr/b/n/10 ind_property_restrictions \T1/ptm/m/n/10 ^^U List of In-di-vid -u-al-Prop-erty key:value Underfull \hbox (badness 10000) in paragraph at lines 896--900 \T1/ptm/m/n/10 pairs that in-di-vid-u-als must have to re-ceive the di-ag-nos-t ic in-ter-ven-tion. Underfull \hbox (badness 10000) in paragraph at lines 896--900 \T1/ptm/m/n/10 For ex-am-ple, \T1/pcr/m/n/10 [{"IndividualProperty1":"PropertyV alue1"}, Underfull \hbox (badness 10000) in paragraph at lines 902--906 []\T1/pcr/b/n/10 disqualifying_properties \T1/ptm/m/n/10 ^^U List of In-di-vid- u-al-Prop-erty Underfull \hbox (badness 10000) in paragraph at lines 902--906 \T1/ptm/m/n/10 key:value pairs that cause an in-ter-ven-tion to be aborted. For ex- Underfull \hbox (badness 10000) in paragraph at lines 902--906 \T1/ptm/m/n/10 am-ple, \T1/pcr/m/n/10 [{"IndividualProperty1":"PropertyValue1"} , [19] Underfull \hbox (badness 10000) in paragraph at lines 944--944 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day: int = Underfull \hbox (badness 6141) in paragraph at lines 944--944 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age: float = 1\T1/ptm/ m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 944--944 \T1/ptm/m/it/10 re-ceiv-ing_drugs_event: Overfull \hbox (75.71327pt too wide) in paragraph at lines 944--944 \T1/ptm/m/it/10 emod_api.interventions.common.BroadcastEvent Overfull \hbox (9.55446pt too wide) in paragraph at lines 944--944 \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 BLOOD_SMEAR_PARASITES\TS1/ptm/m/it/10 '\T1/pt m/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 944--944 \T1/ptm/m/it/10 di-ag-nos-tic_threshold: Underfull \hbox (badness 10000) in paragraph at lines 944--944 \T1/ptm/m/it/10 float = 40\T1/ptm/m/n/10 , \T1/ptm/m/it/10 di-ag-nos- Underfull \hbox (badness 5119) in paragraph at lines 944--944 \T1/ptm/m/it/10 tic_sensitivity: float = 1\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 944--944 \T1/ptm/m/it/10 1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 mea-sure-ment_sensitivity: Overfull \hbox (104.50304pt too wide) in paragraph at lines 944--944 \T1/ptm/m/it/10 emod_api.interventions.common.PropertyValueChanger Underfull \hbox (badness 10000) in paragraph at lines 944--944 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 944--944 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 944--944 \T1/ptm/m/it/10 list = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 944--944 \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 944--944 \T1/ptm/m/it/10 list = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 dis-qual-i-fy- Underfull \hbox (badness 10000) in paragraph at lines 979--986 []\T1/pcr/b/n/10 diagnostic_type \T1/ptm/m/n/10 ^^U Di-ag-nos-tic type. Avail-a ble op-tions are: * Underfull \hbox (badness 10000) in paragraph at lines 979--986 \T1/ptm/m/n/10 TRUE_INFECTION_STATUS * BLOOD_SMEAR * PCR * PF_HRP2 * [20] Underfull \hbox (badness 10000) in paragraph at lines 1025--1029 []\T1/pcr/b/n/10 node_property_restrictions \T1/ptm/m/n/10 ^^U List of Node-Pro p-erty key:value Underfull \hbox (badness 10000) in paragraph at lines 1025--1029 \T1/ptm/m/n/10 pairs that nodes must have to re-ceive the di-ag-nos-tic in-ter- ven- Underfull \hbox (badness 10000) in paragraph at lines 1025--1029 \T1/ptm/m/n/10 tion. For ex-am-ple, \T1/pcr/m/n/10 [{"NodeProperty1":"PropertyV alue1"}, Underfull \hbox (badness 10000) in paragraph at lines 1031--1035 []\T1/pcr/b/n/10 ind_property_restrictions \T1/ptm/m/n/10 ^^U List of In-di-vid -u-al-Prop-erty key:value Underfull \hbox (badness 10000) in paragraph at lines 1031--1035 \T1/ptm/m/n/10 pairs that in-di-vid-u-als must have to re-ceive the di-ag-nos-t ic in-ter-ven-tion. Underfull \hbox (badness 10000) in paragraph at lines 1031--1035 \T1/ptm/m/n/10 For ex-am-ple, \T1/pcr/m/n/10 [{"IndividualProperty1":"PropertyV alue1"}, Underfull \hbox (badness 10000) in paragraph at lines 1037--1041 []\T1/pcr/b/n/10 disqualifying_properties \T1/ptm/m/n/10 ^^U List of In-di-vid- u-al-Prop-erty Underfull \hbox (badness 10000) in paragraph at lines 1037--1041 \T1/ptm/m/n/10 key:value pairs that cause an in-ter-ven-tion to be aborted. For ex- Underfull \hbox (badness 10000) in paragraph at lines 1037--1041 \T1/ptm/m/n/10 am-ple, \T1/pcr/m/n/10 [{"IndividualProperty1":"PropertyValue1"} , Underfull \hbox (badness 10000) in paragraph at lines 1054--1054 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day: int = Underfull \hbox (badness 10000) in paragraph at lines 1054--1054 \T1/ptm/m/it/10 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er-age: float = 1\T1/ptm/ m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1054--1054 \T1/ptm/m/it/10 re-ceiv-ing_drugs_event: Overfull \hbox (69.71327pt too wide) in paragraph at lines 1054--1054 \T1/ptm/m/it/10 emod_api.interventions.common.BroadcastEvent Underfull \hbox (badness 7613) in paragraph at lines 1054--1054 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lis-ten-ing_duration: Underfull \hbox (badness 10000) in paragraph at lines 1054--1054 \T1/ptm/m/it/10 int = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 trig-ger_coverage: Underfull \hbox (badness 10000) in paragraph at lines 1054--1054 \T1/ptm/m/it/10 = 0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 node_selection_type: Underfull \hbox (badness 10000) in paragraph at lines 1054--1054 \T1/ptm/m/it/10 str = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 DIS-TANCE_ONLY\TS1/ptm/ m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1054--1054 \T1/ptm/m/it/10 nodeIDs: list = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1054--1054 \T1/ptm/m/it/10 ex-pire_recent_drugs: Overfull \hbox (98.50304pt too wide) in paragraph at lines 1054--1054 \T1/ptm/m/it/10 emod_api.interventions.common.PropertyValueChanger Underfull \hbox (badness 10000) in paragraph at lines 1054--1054 \T1/ptm/m/it/10 = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1054--1054 \T1/ptm/m/it/10 node_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1054--1054 \T1/ptm/m/it/10 list = None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1054--1054 \T1/ptm/m/it/10 ind_property_restrictions: Underfull \hbox (badness 10000) in paragraph at lines 1054--1054 \T1/ptm/m/it/10 list = None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 dis-qual-i-fy- [21] [22] Underfull \hbox (badness 10000) in paragraph at lines 1121--1125 []\T1/pcr/b/n/10 node_property_restrictions \T1/ptm/m/n/10 ^^U List of Node-Pro p-erty key:value Underfull \hbox (badness 10000) in paragraph at lines 1121--1125 \T1/ptm/m/n/10 pairs that nodes must have to re-ceive the di-ag-nos-tic in-ter- ven- Underfull \hbox (badness 10000) in paragraph at lines 1121--1125 \T1/ptm/m/n/10 tion. For ex-am-ple, \T1/pcr/m/n/10 [{"NodeProperty1":"PropertyV alue1"}, Underfull \hbox (badness 10000) in paragraph at lines 1127--1131 []\T1/pcr/b/n/10 ind_property_restrictions \T1/ptm/m/n/10 ^^U List of In-di-vid -u-al-Prop-erty key:value Underfull \hbox (badness 10000) in paragraph at lines 1127--1131 \T1/ptm/m/n/10 pairs that in-di-vid-u-als must have to re-ceive the di-ag-nos-t ic in-ter-ven-tion. Underfull \hbox (badness 10000) in paragraph at lines 1127--1131 \T1/ptm/m/n/10 For ex-am-ple, \T1/pcr/m/n/10 [{"IndividualProperty1":"PropertyV alue1"}, Underfull \hbox (badness 10000) in paragraph at lines 1133--1137 []\T1/pcr/b/n/10 disqualifying_properties \T1/ptm/m/n/10 ^^U ist of In-di-vid-u -al-Prop-erty Underfull \hbox (badness 10000) in paragraph at lines 1133--1137 \T1/ptm/m/n/10 key:value pairs that cause an in-ter-ven-tion to be aborted. For ex- Underfull \hbox (badness 10000) in paragraph at lines 1133--1137 \T1/ptm/m/n/10 am-ple, \T1/pcr/m/n/10 [{"IndividualProperty1":"PropertyValue1"} , Underfull \hbox (badness 10000) in paragraph at lines 1150--1150 \T1/ptm/m/it/10 TANCE_ONLY\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ev ent_trigger: Underfull \hbox (badness 10000) in paragraph at lines 1185--1185 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov- Underfull \hbox (badness 10000) in paragraph at lines 1185--1185 \T1/ptm/m/it/10 er-age=1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 block- Underfull \hbox (badness 10000) in paragraph at lines 1185--1185 \T1/ptm/m/it/10 ing_eff=1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 killing_eff=1\T1/ptm/ m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1185--1185 \T1/ptm/m/it/10 in-sec-ti-cide=None\T1/ptm/m/n/10 , [23] Underfull \hbox (badness 10000) in paragraph at lines 1206--1206 []\T1/ptm/m/it/10 schema_path_container\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1206--1206 \T1/ptm/m/it/10 killing_effect\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day=0\T1/p tm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1206--1206 \T1/ptm/m/it/10 tar-get_coverage=1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar- Underfull \hbox (badness 10000) in paragraph at lines 1206--1206 \T1/ptm/m/it/10 get_num_individuals=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1206--1206 \T1/ptm/m/it/10 killing_duration_box=0\T1/ptm/m/n/10 , Overfull \hbox (5.29372pt too wide) in paragraph at lines 1206--1206 \T1/ptm/m/it/10 killing_exponential_decay_rate=0\T1/pcr/m/n/10 ) Overfull \hbox (19.6943pt too wide) in paragraph at lines 1240--1240 []\T1/ptm/m/it/10 schema_path_container\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1240--1240 \T1/ptm/m/it/10 killing_effect\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1240--1240 \T1/ptm/m/it/10 in-sec-ti- Underfull \hbox (badness 10000) in paragraph at lines 1240--1240 \T1/ptm/m/it/10 cide_name=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1240--1240 \T1/ptm/m/it/10 start_day=0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tar- Underfull \hbox (badness 10000) in paragraph at lines 1240--1240 \T1/ptm/m/it/10 get_coverage=1.0\T1/ptm/m/n/10 , Overfull \hbox (41.63394pt too wide) in paragraph at lines 1240--1240 \T1/ptm/m/it/10 killing_predecay_duration=0\T1/ptm/m/n/10 , Overfull \hbox (10.33417pt too wide) in paragraph at lines 1240--1240 \T1/ptm/m/it/10 killing_decay_rate=0\T1/ptm/m/n/10 , [24] Underfull \hbox (badness 10000) in paragraph at lines 1277--1277 \T1/ptm/m/it/10 age=1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 killing_eff=1\T1/ptm/m/ n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1277--1277 \T1/ptm/m/it/10 in-sec-ti-cide=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 con- Underfull \hbox (badness 10000) in paragraph at lines 1277--1277 \T1/ptm/m/it/10 stant_duration=100\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1289--1289 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Overfull \hbox (3.52452pt too wide) in paragraph at lines 1289--1289 \T1/ptm/m/it/10 start_day\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1289--1289 \T1/ptm/m/it/10 file- Overfull \hbox (18.76479pt too wide) in paragraph at lines 1289--1289 \T1/ptm/m/it/10 name=None\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 1298--1298 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cov-er- Underfull \hbox (badness 10000) in paragraph at lines 1298--1298 \T1/ptm/m/it/10 age=1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 killing_eff=1\T1/ptm/m/ n/10 , \T1/ptm/m/it/10 in-sec-ti- Underfull \hbox (badness 10000) in paragraph at lines 1306--1306 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1315--1315 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 start_day: int = 1\T1/pt m/m/n/10 , \T1/ptm/m/it/10 dis- Underfull \hbox (badness 10000) in paragraph at lines 1315--1315 \T1/ptm/m/it/10 0.0013698630136986301\T1/ptm/m/n/10 , \T1/ptm/m/it/10 killing_e ff: Underfull \hbox (badness 10000) in paragraph at lines 1315--1315 \T1/ptm/m/it/10 0.0006849315068493151\T1/ptm/m/n/10 , \T1/ptm/m/it/10 iv_name: Underfull \hbox (badness 10000) in paragraph at lines 1315--1315 \T1/ptm/m/it/10 str = \TS1/ptm/m/it/10 '\T1/ptm/m/it/10 Us-ageDe-pen-dentBed-ne t\TS1/ptm/m/it/10 '\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1315--1315 \T1/ptm/m/it/10 sonal_dependence: dict = None\T1/ptm/m/n/10 , [25] [26] [27] Underfull \hbox (badness 10000) in paragraph at lines 1512--1512 []\T1/ptm/m/it/10 camp\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1512--1512 \T1/ptm/m/it/10 start_day\T1/ptm/m/n/10 , \T1/ptm/m/it/10 file- Underfull \hbox (badness 10000) in paragraph at lines 1527--1527 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pa-ram-e-ters: Underfull \hbox (badness 10000) in paragraph at lines 1527--1527 \T1/ptm/m/it/10 dict = \T1/ptm/m/n/10 , Underfull \hbox (badness 6348) in paragraph at lines 1527--1527 \T1/ptm/m/it/10 En-abled: bool = Underfull \hbox (badness 10000) in paragraph at lines 1567--1567 \T1/ptm/m/it/10 None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pa-ram-e-ters: Underfull \hbox (badness 10000) in paragraph at lines 1567--1567 \T1/ptm/m/it/10 dict = \T1/ptm/m/n/10 , Underfull \hbox (badness 6348) in paragraph at lines 1567--1567 \T1/ptm/m/it/10 En-abled: bool = [28] Underfull \hbox (badness 10000) in paragraph at lines 1587--1587 []\T1/ptm/m/it/10 class_name: Underfull \hbox (badness 10000) in paragraph at lines 1587--1587 \T1/ptm/m/it/10 = \T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1587--1587 \T1/ptm/m/it/10 En-abled: Overfull \hbox (0.5943pt too wide) in paragraph at lines 1587--1587 \T1/ptm/m/it/10 Pretty_Format: Underfull \hbox (badness 10000) in paragraph at lines 1607--1607 []\T1/ptm/m/it/10 class_name: Underfull \hbox (badness 10000) in paragraph at lines 1607--1607 \T1/ptm/m/it/10 pa-ram-e- Underfull \hbox (badness 10000) in paragraph at lines 1607--1607 \T1/ptm/m/it/10 \T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1607--1607 \T1/ptm/m/it/10 En-abled: Overfull \hbox (6.5943pt too wide) in paragraph at lines 1607--1607 \T1/ptm/m/it/10 Pretty_Format: [29] [30] Overfull \hbox (54.6225pt too wide) in paragraph at lines 1780--1781 []\T1/pcr/m/n/10 emodpy_malaria.demographics.MalariaDemographics\T1/ptm/m/n/10 , Overfull \hbox (12.6225pt too wide) in paragraph at lines 1784--1785 []\T1/pcr/m/n/10 emodpy_malaria.interventions.diag_survey\T1/ptm/m/n/10 , Overfull \hbox (24.6225pt too wide) in paragraph at lines 1786--1787 []\T1/pcr/m/n/10 emodpy_malaria.interventions.drug_campaign\T1/ptm/m/n/10 , Overfull \hbox (6.6225pt too wide) in paragraph at lines 1788--1789 []\T1/pcr/m/n/10 emodpy_malaria.interventions.ivermectin\T1/ptm/m/n/10 , Overfull \hbox (36.6225pt too wide) in paragraph at lines 1789--1790 []\T1/pcr/m/n/10 emodpy_malaria.interventions.outdoorrestkill\T1/ptm/m/n/10 , Overfull \hbox (24.6225pt too wide) in paragraph at lines 1790--1791 []\T1/pcr/m/n/10 emodpy_malaria.interventions.spacespraying\T1/ptm/m/n/10 , Overfull \hbox (0.6225pt too wide) in paragraph at lines 1791--1792 []\T1/pcr/m/n/10 emodpy_malaria.interventions.sugartrap\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1792--1793 []\T1/pcr/m/n/10 emodpy_malaria.interventions.udbednet\T1/ptm/m/n/10 , [31] (./institute-for-disease-modeling-emodpy-malaria.ind [32] Underfull \hbox (badness 10000) in paragraph at lines 9--11 []\T1/pcr/m/n/10 add_diagnostic_survey() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod -ule Underfull \hbox (badness 10000) in paragraph at lines 11--13 []\T1/pcr/m/n/10 add_drug_campaign() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (4.27083pt too wide) in paragraph at lines 11--13 \T1/ptm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 13--15 []\T1/pcr/m/n/10 add_fMDA() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (4.27083pt too wide) in paragraph at lines 13--15 \T1/ptm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 15--17 []\T1/pcr/m/n/10 add_MDA() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (4.27083pt too wide) in paragraph at lines 15--17 \T1/ptm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 17--19 []\T1/pcr/m/n/10 add_MSAT() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (4.27083pt too wide) in paragraph at lines 17--19 \T1/ptm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 19--20 []\T1/pcr/m/n/10 add_mutation() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 20--21 []\T1/pcr/m/n/10 add_resistance() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 21--23 []\T1/pcr/m/n/10 add_rfMDA() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (4.27083pt too wide) in paragraph at lines 21--23 \T1/ptm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 23--25 []\T1/pcr/m/n/10 add_rfMSAT() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (4.27083pt too wide) in paragraph at lines 23--25 \T1/ptm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 26--28 []\T1/pcr/m/n/10 AntiMalarialDrug() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 26--28 \T1/ptm/m/it/10 emodpy_malaria.interventions.common\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 28--30 []\T1/pcr/m/n/10 AntiMalarialDrug() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 33--35 []\T1/pcr/m/n/10 BabyBednet() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 35--36 []\T1/pcr/m/n/10 Bednet() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (72.70978pt too wide) in paragraph at lines 39--41 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.MalariaPatientJSONReport Overfull \hbox (59.06006pt too wide) in paragraph at lines 41--43 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.MalariaSummaryReport Overfull \hbox (74.48972pt too wide) in paragraph at lines 43--45 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.MalariaTransmissionReport Overfull \hbox (49.04977pt too wide) in paragraph at lines 45--47 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.ReportVectorGenetics Overfull \hbox (33.50998pt too wide) in paragraph at lines 47--49 []\T1/pcr/m/n/10 config() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.report ers.builtin.ReportVectorStats Underfull \hbox (badness 10000) in paragraph at lines 52--54 []\T1/pcr/m/n/10 drug_configs_from_code() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule Overfull \hbox (4.27083pt too wide) in paragraph at lines 52--54 \T1/ptm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/ptm/m/n/10 ), Overfull \hbox (52.1225pt too wide) in paragraph at lines 63--64 []\T1/pcr/m/n/10 emodpy_malaria.demographics.MalariaDemographics Overfull \hbox (10.1225pt too wide) in paragraph at lines 71--72 []\T1/pcr/m/n/10 emodpy_malaria.interventions.diag_survey Overfull \hbox (22.1225pt too wide) in paragraph at lines 75--76 []\T1/pcr/m/n/10 emodpy_malaria.interventions.drug_campaign Overfull \hbox (4.1225pt too wide) in paragraph at lines 79--80 []\T1/pcr/m/n/10 emodpy_malaria.interventions.ivermectin Overfull \hbox (34.1225pt too wide) in paragraph at lines 81--82 []\T1/pcr/m/n/10 emodpy_malaria.interventions.outdoorrestkill Overfull \hbox (22.1225pt too wide) in paragraph at lines 83--84 []\T1/pcr/m/n/10 emodpy_malaria.interventions.spacespraying [33] Underfull \hbox (badness 10000) in paragraph at lines 96--98 []\T1/pcr/m/n/10 fmda_cfg() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (4.27083pt too wide) in paragraph at lines 96--98 \T1/ptm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 98--100 []\T1/pcr/m/n/10 from_pop_csv() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (36.54083pt too wide) in paragraph at lines 98--100 \T1/ptm/m/it/10 emodpy_malaria.demographics.MalariaDemographics\T1/ptm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 100--102 []\T1/pcr/m/n/10 from_synth_pop() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (36.54083pt too wide) in paragraph at lines 100--102 \T1/ptm/m/it/10 emodpy_malaria.demographics.MalariaDemographics\T1/ptm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 102--104 []\T1/pcr/m/n/10 fromBasicNode() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (36.54083pt too wide) in paragraph at lines 102--104 \T1/ptm/m/it/10 emodpy_malaria.demographics.MalariaDemographics\T1/ptm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 107--108 []\T1/pcr/m/n/10 get_drug_params() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 108--110 []\T1/pcr/m/n/10 get_file_from_http() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 110--112 []\T1/pcr/m/n/10 get_species_params() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 115--117 []\T1/pcr/m/n/10 IRSHousingModification() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 117--119 []\T1/pcr/m/n/10 Ivermectin() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 117--119 \T1/ptm/m/it/10 emodpy_malaria.interventions.ivermectin\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 122--124 []\T1/pcr/m/n/10 MalariaDemographics \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Overfull \hbox (36.54083pt too wide) in paragraph at lines 122--124 \T1/ptm/m/it/10 emodpy_malaria.demographics.MalariaDemographics\T1/ptm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 124--126 []\T1/pcr/m/n/10 MalariaDiagnostic() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 124--126 \T1/ptm/m/it/10 emodpy_malaria.interventions.common\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 126--128 []\T1/pcr/m/n/10 MalariaPatientJSONReport \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 128--130 []\T1/pcr/m/n/10 MalariaSummaryReport \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 130--132 []\T1/pcr/m/n/10 MalariaTransmissionReport \T1/ptm/m/n/10 (\T1/ptm/m/it/10 clas s in Overfull \hbox (74.6225pt too wide) in paragraph at lines 136--137 []| \T1/pcr/m/n/10 emodpy_malaria.demographics.MalariaDemographics\T1/ptm/m/n/1 0 , Overfull \hbox (2.6225pt too wide) in paragraph at lines 138--139 []| \T1/pcr/m/n/10 emodpy_malaria.interventions.bednet\T1/ptm/m/n/10 , Overfull \hbox (2.6225pt too wide) in paragraph at lines 139--140 []| \T1/pcr/m/n/10 emodpy_malaria.interventions.common\T1/ptm/m/n/10 , Overfull \hbox (32.6225pt too wide) in paragraph at lines 140--141 []| \T1/pcr/m/n/10 emodpy_malaria.interventions.diag_survey\T1/ptm/m/n/10 , Overfull \hbox (44.6225pt too wide) in paragraph at lines 142--143 []| \T1/pcr/m/n/10 emodpy_malaria.interventions.drug_campaign\T1/ptm/m/n/10 , Overfull \hbox (26.6225pt too wide) in paragraph at lines 144--145 []| \T1/pcr/m/n/10 emodpy_malaria.interventions.ivermectin\T1/ptm/m/n/10 , Overfull \hbox (56.6225pt too wide) in paragraph at lines 145--146 []| \T1/pcr/m/n/10 emodpy_malaria.interventions.outdoorrestkill\T1/ptm/m/n/10 , Overfull \hbox (44.6225pt too wide) in paragraph at lines 146--147 []| \T1/pcr/m/n/10 emodpy_malaria.interventions.spacespraying\T1/ptm/m/n/10 , Overfull \hbox (20.6225pt too wide) in paragraph at lines 147--148 []| \T1/pcr/m/n/10 emodpy_malaria.interventions.sugartrap\T1/ptm/m/n/10 , Overfull \hbox (14.6225pt too wide) in paragraph at lines 148--149 []| \T1/pcr/m/n/10 emodpy_malaria.interventions.udbednet\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 154--156 []\T1/pcr/m/n/10 new_intervention_as_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 156--158 []\T1/pcr/m/n/10 new_intervention_as_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 158--160 []\T1/pcr/m/n/10 new_intervention_as_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 160--162 []\T1/pcr/m/n/10 new_intervention_as_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 160--162 \T1/ptm/m/it/10 emodpy_malaria.interventions.spacespraying\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 162--164 []\T1/pcr/m/n/10 new_intervention_as_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 164--166 []\T1/pcr/m/n/10 new_intervention_as_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 169--171 []\T1/pcr/m/n/10 OutdoorRestKill() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (84.70978pt too wide) in paragraph at lines 174--176 []\T1/pcr/m/n/10 parameters \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.repo rters.builtin.MalariaPatientJSONReport Overfull \hbox (71.06006pt too wide) in paragraph at lines 176--178 []\T1/pcr/m/n/10 parameters \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.repo rters.builtin.MalariaSummaryReport Overfull \hbox (86.48972pt too wide) in paragraph at lines 178--180 []\T1/pcr/m/n/10 parameters \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.repo rters.builtin.MalariaTransmissionReport [34] Overfull \hbox (61.04977pt too wide) in paragraph at lines 180--182 []\T1/pcr/m/n/10 parameters \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.repo rters.builtin.ReportVectorGenetics Overfull \hbox (45.50998pt too wide) in paragraph at lines 182--184 []\T1/pcr/m/n/10 parameters \T1/ptm/m/n/10 (\T1/ptm/m/it/10 emodpy_malaria.repo rters.builtin.ReportVectorStats Underfull \hbox (badness 10000) in paragraph at lines 187--189 []\T1/pcr/m/n/10 ReportVectorGenetics \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 189--191 []\T1/pcr/m/n/10 ReportVectorStats \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 194--195 []\T1/pcr/m/n/10 set_genetics() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 195--196 []\T1/pcr/m/n/10 set_resistances() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 197--198 []\T1/pcr/m/n/10 set_team_defaults() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 198--200 []\T1/pcr/m/n/10 set_team_drug_params() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod- ule Underfull \hbox (badness 10000) in paragraph at lines 200--202 []\T1/pcr/m/n/10 set_team_vs_params() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 202--204 []\T1/pcr/m/n/10 SpaceSpraying() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 202--204 \T1/ptm/m/it/10 emodpy_malaria.interventions.spacespraying\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 204--206 []\T1/pcr/m/n/10 SugarTrap() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 204--206 \T1/ptm/m/it/10 emodpy_malaria.interventions.sugartrap\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 209--211 []\T1/pcr/m/n/10 UDBednet() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 209--211 \T1/ptm/m/it/10 emodpy_malaria.interventions.udbednet\T1/ptm/m/n/10 ), [35]) (./institute-for-disease-modeling-emodpy-malaria.aux) ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on institute-for-disease-modeling-emodpy-malaria.pdf (39 pages, 193875 bytes). Transcript written on institute-for-disease-modeling-emodpy-malaria.log. Latexmk: Index file 'institute-for-disease-modeling-emodpy-malaria.idx' was written Latexmk: Log file says output to 'institute-for-disease-modeling-emodpy-malaria.pdf' Latexmk: Log file says output to 'institute-for-disease-modeling-emodpy-malaria.pdf' Latexmk: All targets (institute-for-disease-modeling-emodpy-malaria.pdf) are up-to-date [rtd-command-info] start-time: 2021-02-19T00:06:48.057772Z, end-time: 2021-02-19T00:06:48.118822Z, duration: 0, exit-code: 0 mv -f /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/checkouts/latest/docs/_build/latex/institute-for-disease-modeling-emodpy-malaria.pdf /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/artifacts/latest/sphinx_pdf/institute-for-disease-modeling-emodpy-malaria.pdf