Read the Docs build information Build id: 541208 Project: mdolab-idwarp Version: latest Commit: a748a27396eeca091cde70a8e345100f21080410 Date: 2021-01-25T15:46:47.271304Z State: finished Success: True [rtd-command-info] start-time: 2021-01-25T15:52:22.585998Z, end-time: 2021-01-25T15:52:32.249660Z, duration: 9, exit-code: 0 git clone --no-single-branch --depth 50 https://github.com/mdolab/idwarp.git . Cloning into '.'... [rtd-command-info] start-time: 2021-01-25T15:52:32.595328Z, end-time: 2021-01-25T15:52:32.749710Z, duration: 0, exit-code: 0 git checkout --force origin/master Note: checking out 'origin/master'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at a748a27 Removed old tests (#41) [rtd-command-info] start-time: 2021-01-25T15:52:33.077208Z, end-time: 2021-01-25T15:52:33.130480Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2021-01-25T15:52:38.342755Z, end-time: 2021-01-25T15:53:00.336598Z, duration: 21, exit-code: 0 python3.7 -mvirtualenv Using base prefix '/home/docs/.pyenv/versions/3.7.9' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-idwarp/envs/latest/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-idwarp/envs/latest/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2021-01-25T15:53:01.992957Z, end-time: 2021-01-25T15:53:03.253460Z, duration: 1, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip Requirement already satisfied: pip in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-idwarp/envs/latest/lib/python3.7/site-packages (21.0) Collecting pip Downloading pip-21.0-py3-none-any.whl (1.5 MB) Downloading pip-20.3.4-py2.py3-none-any.whl (1.5 MB) [rtd-command-info] start-time: 2021-01-25T15:53:03.373988Z, end-time: 2021-01-25T15:53:21.498954Z, duration: 18, exit-code: 0 python -m pip install --upgrade --no-cache-dir setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 six commonmark==0.8.1 recommonmark==0.5.0 sphinx sphinx-rtd-theme readthedocs-sphinx-ext<2.2 Collecting setuptools==41.0.1 Downloading setuptools-41.0.1-py2.py3-none-any.whl (575 kB) Collecting docutils==0.14 Downloading docutils-0.14-py3-none-any.whl (543 kB) Collecting mock==1.0.1 Downloading mock-1.0.1.zip (861 kB) Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting six Downloading six-1.15.0-py2.py3-none-any.whl (10 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx Downloading Sphinx-3.4.3-py3-none-any.whl (2.9 MB) Collecting sphinx-rtd-theme Downloading sphinx_rtd_theme-0.5.1-py2.py3-none-any.whl (2.8 MB) Collecting readthedocs-sphinx-ext<2.2 Downloading readthedocs_sphinx_ext-2.1.3-py2.py3-none-any.whl (11 kB) Collecting future Downloading future-0.18.2.tar.gz (829 kB) Collecting Jinja2>=2.9 Downloading Jinja2-2.11.2-py2.py3-none-any.whl (125 kB) Collecting requests Downloading requests-2.25.1-py2.py3-none-any.whl (61 kB) Collecting packaging Downloading packaging-20.8-py2.py3-none-any.whl (39 kB) Collecting sphinxcontrib-qthelp Downloading sphinxcontrib_qthelp-1.0.3-py2.py3-none-any.whl (90 kB) Collecting babel>=1.3 Downloading Babel-2.9.0-py2.py3-none-any.whl (8.8 MB) Collecting sphinxcontrib-serializinghtml Downloading sphinxcontrib_serializinghtml-1.1.4-py2.py3-none-any.whl (89 kB) Collecting sphinxcontrib-htmlhelp Downloading sphinxcontrib_htmlhelp-1.0.3-py2.py3-none-any.whl (96 kB) Collecting sphinxcontrib-devhelp Downloading sphinxcontrib_devhelp-1.0.2-py2.py3-none-any.whl (84 kB) Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.1.0-py2.py3-none-any.whl (93 kB) Collecting Pygments>=2.0 Downloading Pygments-2.7.4-py3-none-any.whl (950 kB) Collecting sphinxcontrib-applehelp Downloading sphinxcontrib_applehelp-1.0.2-py2.py3-none-any.whl (121 kB) Collecting imagesize Downloading imagesize-1.2.0-py2.py3-none-any.whl (4.8 kB) Collecting sphinxcontrib-jsmath Downloading sphinxcontrib_jsmath-1.0.1-py2.py3-none-any.whl (5.1 kB) Collecting pytz>=2015.7 Downloading pytz-2020.5-py2.py3-none-any.whl (510 kB) Collecting MarkupSafe>=0.23 Downloading MarkupSafe-1.1.1-cp37-cp37m-manylinux1_x86_64.whl (27 kB) Collecting chardet<5,>=3.0.2 Downloading chardet-4.0.0-py2.py3-none-any.whl (178 kB) Collecting urllib3<1.27,>=1.21.1 Downloading urllib3-1.26.2-py2.py3-none-any.whl (136 kB) Collecting certifi>=2017.4.17 Downloading certifi-2020.12.5-py2.py3-none-any.whl (147 kB) Collecting idna<3,>=2.5 Downloading idna-2.10-py2.py3-none-any.whl (58 kB) Collecting pyparsing>=2.0.2 Downloading pyparsing-2.4.7-py2.py3-none-any.whl (67 kB) Building wheels for collected packages: mock, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23755 sha256=743b12aaa680e708380af5ba20d7daf6a1c0936ae0d756f1fda9682817d5080a Stored in directory: /tmp/pip-ephem-wheel-cache-c5gzcs6a/wheels/7a/94/b1/0fdc5339a5bd487a5cc15421ec200d9ba3e2aa7190e4a727f1 Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491059 sha256=9276720fbc7b4fa578a0eb3412f555c21d31c4b13aaaa76a598acc134797808d Stored in directory: /tmp/pip-ephem-wheel-cache-c5gzcs6a/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0 Successfully built mock future Installing collected packages: urllib3, pytz, pyparsing, MarkupSafe, idna, chardet, certifi, sphinxcontrib-serializinghtml, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, snowballstemmer, setuptools, requests, Pygments, packaging, Jinja2, imagesize, future, docutils, babel, alabaster, sphinx, commonmark, sphinx-rtd-theme, six, recommonmark, readthedocs-sphinx-ext, pillow, mock Attempting uninstall: setuptools Found existing installation: setuptools 52.0.0 Uninstalling setuptools-52.0.0: Successfully uninstalled setuptools-52.0.0 Successfully installed Jinja2-2.11.2 MarkupSafe-1.1.1 Pygments-2.7.4 alabaster-0.7.12 babel-2.9.0 certifi-2020.12.5 chardet-4.0.0 commonmark-0.8.1 docutils-0.14 future-0.18.2 idna-2.10 imagesize-1.2.0 mock-1.0.1 packaging-20.8 pillow-5.4.1 pyparsing-2.4.7 pytz-2020.5 readthedocs-sphinx-ext-2.1.3 recommonmark-0.5.0 requests-2.25.1 setuptools-41.0.1 six-1.15.0 snowballstemmer-2.1.0 sphinx-3.4.3 sphinx-rtd-theme-0.5.1 sphinxcontrib-applehelp-1.0.2 sphinxcontrib-devhelp-1.0.2 sphinxcontrib-htmlhelp-1.0.3 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-qthelp-1.0.3 sphinxcontrib-serializinghtml-1.1.4 urllib3-1.26.2 [rtd-command-info] start-time: 2021-01-25T15:53:21.652658Z, end-time: 2021-01-25T15:53:23.927352Z, duration: 2, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r doc/requirements.txt Collecting numpydoc Downloading numpydoc-1.1.0-py3-none-any.whl (47 kB) Collecting sphinx_mdolab_theme Downloading sphinx_mdolab_theme-0.2.8-py3-none-any.whl (6.7 kB) Requirement already satisfied: Jinja2>=2.3 in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-idwarp/envs/latest/lib/python3.7/site-packages (from numpydoc->-r doc/requirements.txt (line 1)) (2.11.2) Requirement already satisfied: sphinx>=1.6.5 in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-idwarp/envs/latest/lib/python3.7/site-packages (from numpydoc->-r doc/requirements.txt (line 1)) (3.4.3) Requirement already satisfied: MarkupSafe>=0.23 in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-idwarp/envs/latest/lib/python3.7/site-packages (from Jinja2>=2.3->numpydoc->-r doc/requirements.txt (line 1)) (1.1.1) Requirement already satisfied: babel>=1.3 in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-idwarp/envs/latest/lib/python3.7/site-packages (from sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (2.9.0) Requirement already satisfied: sphinxcontrib-devhelp in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-idwarp/envs/latest/lib/python3.7/site-packages (from sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (1.0.2) Requirement already satisfied: sphinxcontrib-jsmath in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-idwarp/envs/latest/lib/python3.7/site-packages (from sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (1.0.1) Requirement already satisfied: sphinxcontrib-qthelp in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-idwarp/envs/latest/lib/python3.7/site-packages (from sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (1.0.3) Requirement already satisfied: snowballstemmer>=1.1 in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-idwarp/envs/latest/lib/python3.7/site-packages (from sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (2.1.0) Requirement already satisfied: Pygments>=2.0 in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-idwarp/envs/latest/lib/python3.7/site-packages (from sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (2.7.4) Requirement already satisfied: alabaster<0.8,>=0.7 in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-idwarp/envs/latest/lib/python3.7/site-packages (from sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (0.7.12) Requirement already satisfied: imagesize in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-idwarp/envs/latest/lib/python3.7/site-packages (from sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (1.2.0) Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-idwarp/envs/latest/lib/python3.7/site-packages (from sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (41.0.1) Requirement already satisfied: docutils>=0.12 in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-idwarp/envs/latest/lib/python3.7/site-packages (from sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (0.14) Requirement already satisfied: requests>=2.5.0 in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-idwarp/envs/latest/lib/python3.7/site-packages (from sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (2.25.1) Requirement already satisfied: sphinxcontrib-applehelp in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-idwarp/envs/latest/lib/python3.7/site-packages (from sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (1.0.2) Requirement already satisfied: sphinxcontrib-serializinghtml in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-idwarp/envs/latest/lib/python3.7/site-packages (from sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (1.1.4) Requirement already satisfied: sphinxcontrib-htmlhelp in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-idwarp/envs/latest/lib/python3.7/site-packages (from sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (1.0.3) Requirement already satisfied: packaging in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-idwarp/envs/latest/lib/python3.7/site-packages (from sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (20.8) Requirement already satisfied: pytz>=2015.7 in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-idwarp/envs/latest/lib/python3.7/site-packages (from babel>=1.3->sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (2020.5) Requirement already satisfied: idna<3,>=2.5 in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-idwarp/envs/latest/lib/python3.7/site-packages (from requests>=2.5.0->sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (2.10) Requirement already satisfied: chardet<5,>=3.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-idwarp/envs/latest/lib/python3.7/site-packages (from requests>=2.5.0->sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (4.0.0) Requirement already satisfied: urllib3<1.27,>=1.21.1 in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-idwarp/envs/latest/lib/python3.7/site-packages (from requests>=2.5.0->sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (1.26.2) Requirement already satisfied: certifi>=2017.4.17 in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-idwarp/envs/latest/lib/python3.7/site-packages (from requests>=2.5.0->sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (2020.12.5) Collecting pyyaml Downloading PyYAML-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (636 kB) Requirement already satisfied: sphinx-rtd-theme in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-idwarp/envs/latest/lib/python3.7/site-packages (from sphinx_mdolab_theme->-r doc/requirements.txt (line 2)) (0.5.1) Requirement already satisfied: pyparsing>=2.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-idwarp/envs/latest/lib/python3.7/site-packages (from packaging->sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (2.4.7) Installing collected packages: pyyaml, sphinx-mdolab-theme, numpydoc Successfully installed numpydoc-1.1.0 pyyaml-5.4.1 sphinx-mdolab-theme-0.2.8 [rtd-command-info] start-time: 2021-01-25T15:53:25.448587Z, end-time: 2021-01-25T15:53:25.537151Z, duration: 0, exit-code: 0 cat doc/conf.py from sphinx_mdolab_theme.config import * # noqa: F403 # -- Path setup -------------------------------------------------------------- # If extensions (or modules to document with autodoc) are in another directory, # add these directories to sys.path here. If the directory is relative to the # documentation root, use os.path.abspath to make it absolute, like shown here. import os import sys sys.path.insert(0, os.path.abspath("../")) # -- Project information ----------------------------------------------------- project = "IDWarp" # -- General configuration ----------------------------------------------------- # Built-in Sphinx extensions are already contained in the imported variable # here we add external extensions, which must also be added to requirements.txt # so that RTD can import and use them extensions.extend(["numpydoc"]) # noqa: F405 # mock import for autodoc autodoc_mock_imports = ["numpy", "mpi4py", "petsc4py", "baseclasses"] ########################################################################### # auto-created readthedocs.org specific configuration # ########################################################################### # # The following code was added during an automated build on readthedocs.org # It is auto created and injected for every build. The result is based on the # conf.py.tmpl file found in the readthedocs.org codebase: # https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl # import importlib import sys import os.path from six import string_types from sphinx import version_info # Get suffix for proper linking to GitHub # This is deprecated in Sphinx 1.3+, # as each page can have its own suffix if globals().get('source_suffix', False): if isinstance(source_suffix, string_types): SUFFIX = source_suffix elif isinstance(source_suffix, (list, tuple)): # Sphinx >= 1.3 supports list/tuple to define multiple suffixes SUFFIX = source_suffix[0] elif isinstance(source_suffix, dict): # Sphinx >= 1.8 supports a mapping dictionary for multiple suffixes SUFFIX = list(source_suffix.keys())[0] # make a ``list()`` for py2/py3 compatibility else: # default to .rst SUFFIX = '.rst' else: SUFFIX = '.rst' # Add RTD Static Path. Add to the end because it overwrites previous files. if not 'html_static_path' in globals(): html_static_path = [] if os.path.exists('_static'): html_static_path.append('_static') # Add RTD Theme only if they aren't overriding it already using_rtd_theme = ( ( 'html_theme' in globals() and html_theme in ['default'] and # Allow people to bail with a hack of having an html_style 'html_style' not in globals() ) or 'html_theme' not in globals() ) if using_rtd_theme: theme = importlib.import_module('sphinx_rtd_theme') html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} if 'html_theme_path' in globals(): html_theme_path.append(theme.get_html_theme_path()) else: html_theme_path = [theme.get_html_theme_path()] if globals().get('websupport2_base_url', False): websupport2_base_url = 'https://readthedocs.com/websupport' websupport2_static_url = 'https://assets.readthedocs.com/' #Add project information to the template context. context = { 'using_theme': using_rtd_theme, 'html_theme': html_theme, 'current_version': "latest", 'version_slug': "latest", 'MEDIA_URL': "https://media.readthedocs.com/media/", 'STATIC_URL': "https://assets.readthedocs.com/", 'PRODUCTION_DOMAIN': "readthedocs.com", 'versions': [ ("latest", "/en/latest/"), ("stable", "/en/stable/"), ], 'downloads': [ ("pdf", "//mdolab-idwarp.readthedocs-hosted.com/_/downloads/en/latest/pdf/"), ("html", "//mdolab-idwarp.readthedocs-hosted.com/_/downloads/en/latest/htmlzip/"), ("epub", "//mdolab-idwarp.readthedocs-hosted.com/_/downloads/en/latest/epub/"), ], 'subprojects': [ ], 'slug': 'mdolab-idwarp', 'name': u'idwarp', 'rtd_language': u'en', 'programming_language': u'words', 'canonical_url': 'https://mdolab-idwarp.readthedocs-hosted.com/en/latest/', 'analytics_code': 'None', 'single_version': False, 'conf_py_path': '/doc/', 'api_host': 'https://readthedocs.com', 'github_user': 'mdolab', 'proxied_api_host': '/_', 'github_repo': 'idwarp', 'github_version': 'master', 'display_github': True, 'bitbucket_user': 'None', 'bitbucket_repo': 'None', 'bitbucket_version': 'master', 'display_bitbucket': False, 'gitlab_user': 'None', 'gitlab_repo': 'None', 'gitlab_version': 'master', 'display_gitlab': False, 'READTHEDOCS': True, 'using_theme': (html_theme == "default"), 'new_theme': (html_theme == "sphinx_rtd_theme"), 'source_suffix': SUFFIX, 'ad_free': False, 'docsearch_disabled': False, 'user_analytics_code': '', 'global_analytics_code': 'UA-17997319-2', 'commit': 'a748a273', } # For sphinx >=1.8 we can use html_baseurl to set the canonical URL. # https://www.sphinx-doc.org/en/master/usage/configuration.html#confval-html_baseurl if version_info >= (1, 8): if not globals().get('html_baseurl'): html_baseurl = context['canonical_url'] context['canonical_url'] = None if 'html_context' in globals(): html_context.update(context) else: html_context = context # Add custom RTD extension if 'extensions' in globals(): # Insert at the beginning because it can interfere # with other extensions. # See https://github.com/rtfd/readthedocs.org/pull/4054 extensions.insert(0, "readthedocs_ext.readthedocs") else: extensions = ["readthedocs_ext.readthedocs"] # Add External version warning banner to the external version documentation if 'branch' == 'external': extensions.insert(1, "readthedocs_ext.external_version_warning") readthedocs_vcs_url = 'None' readthedocs_build_url = 'https://readthedocs.com/projects/mdolab-idwarp/builds/541208/' project_language = 'en' # User's Sphinx configurations language_user = globals().get('language', None) latex_engine_user = globals().get('latex_engine', None) latex_elements_user = globals().get('latex_elements', None) # Remove this once xindy gets installed in Docker image and XINDYOPS # env variable is supported # https://github.com/rtfd/readthedocs-docker-images/pull/98 latex_use_xindy = False chinese = any([ language_user in ('zh_CN', 'zh_TW'), project_language in ('zh_CN', 'zh_TW'), ]) japanese = any([ language_user == 'ja', project_language == 'ja', ]) if chinese: latex_engine = latex_engine_user or 'xelatex' latex_elements_rtd = { 'preamble': '\\usepackage[UTF8]{ctex}\n', } latex_elements = latex_elements_user or latex_elements_rtd elif japanese: latex_engine = latex_engine_user or 'platex' # Make sure our build directory is always excluded exclude_patterns = globals().get('exclude_patterns', []) exclude_patterns.extend(['_build']) [rtd-command-info] start-time: 2021-01-25T15:53:25.880045Z, end-time: 2021-01-25T15:53:29.047856Z, duration: 3, exit-code: 0 python -m sphinx -T -E -b readthedocs -d _build/doctrees-readthedocs -D language=en . _build/html Running Sphinx v3.4.3 loading translations [en]... done making output directory... done WARNING: html_static_path entry '_static' does not exist building [mo]: targets for 0 po files that are out of date building [readthedocs]: targets for 7 source files that are out of date updating environment: [new config] 7 added, 0 changed, 0 removed reading sources... [ 14%] API reading sources... [ 28%] MultiUSMesh reading sources... [ 42%] USMesh reading sources... [ 57%] building reading sources... [ 71%] index reading sources... [ 85%] options reading sources... [100%] tutorial looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 14%] API writing output... [ 28%] MultiUSMesh writing output... [ 42%] USMesh writing output... [ 57%] building writing output... [ 71%] index writing output... [ 85%] options writing output... [100%] tutorial generating indices... genindex done highlighting module code... [ 50%] idwarp.MultiUnstructuredMesh highlighting module code... [100%] idwarp.UnstructuredMesh writing additional pages... search done copying static files... done copying extra files... done dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 1 warning. The HTML pages are in _build/html. Updating searchtools for Read the Docs search... [rtd-command-info] start-time: 2021-01-25T15:53:29.286333Z, end-time: 2021-01-25T15:53:31.328168Z, duration: 2, exit-code: 0 python -m sphinx -T -b readthedocssinglehtmllocalmedia -d _build/doctrees-readthedocssinglehtmllocalmedia -D language=en . _build/localmedia Running Sphinx v3.4.3 loading translations [en]... done making output directory... done WARNING: html_static_path entry '_static' does not exist building [mo]: targets for 0 po files that are out of date building [readthedocssinglehtmllocalmedia]: all documents updating environment: [new config] 7 added, 0 changed, 0 removed reading sources... [ 14%] API reading sources... [ 28%] MultiUSMesh reading sources... [ 42%] USMesh reading sources... [ 57%] building reading sources... [ 71%] index reading sources... [ 85%] options reading sources... [100%] tutorial looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done assembling single document... building tutorial options API USMesh MultiUSMesh done writing... done writing additional files... done copying static files... done copying extra files... done dumping object inventory... done build succeeded, 1 warning. The HTML page is in _build/localmedia. Updating searchtools for Read the Docs search... [rtd-command-info] start-time: 2021-01-25T15:53:31.668689Z, end-time: 2021-01-25T15:53:34.220351Z, duration: 2, exit-code: 0 python -m sphinx -b latex -D language=en -d _build/doctrees . _build/latex Running Sphinx v3.4.3 loading translations [en]... done making output directory... done WARNING: html_static_path entry '_static' does not exist building [mo]: targets for 0 po files that are out of date building [latex]: all documents updating environment: [new config] 7 added, 0 changed, 0 removed reading sources... [ 14%] API reading sources... [ 28%] MultiUSMesh reading sources... [ 42%] USMesh reading sources... [ 57%] building reading sources... [ 71%] index reading sources... [ 85%] options reading sources... [100%] tutorial looking for now-outdated files... none found pickling environment... done checking consistency... done processing idwarp.tex... index building tutorial options API USMesh MultiUSMesh resolving references... done writing... done copying TeX support files... copying TeX support files... done build succeeded, 1 warning. The LaTeX files are in _build/latex. Run 'make' in that directory to run these through (pdf)latex (use `make latexpdf' here to do that automatically). WARNING: Missing searchtools: /home/docs/checkouts/readthedocs.org/user_builds/mdolab-idwarp/checkouts/latest/doc/_build/latex/_static/searchtools.js [rtd-command-info] start-time: 2021-01-25T15:53:34.727271Z, end-time: 2021-01-25T15:53:34.831194Z, duration: 0, exit-code: 0 cat latexmkrc $latex = 'latex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $pdflatex = 'pdflatex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $lualatex = 'lualatex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $xelatex = 'xelatex --no-pdf ' . $ENV{'LATEXOPTS'} . ' %O %S'; $makeindex = 'makeindex -s python.ist %O -o %D %S'; add_cus_dep( "glo", "gls", 0, "makeglo" ); sub makeglo { return system( "makeindex -s gglo.ist -o '$_[0].gls' '$_[0].glo'" ); } [rtd-command-info] start-time: 2021-01-25T15:53:34.952784Z, end-time: 2021-01-25T15:53:55.766615Z, duration: 20, exit-code: 0 latexmk -r latexmkrc -pdf -f -dvi- -ps- -jobname=mdolab-idwarp -interaction=nonstopmode Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 1, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 2, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 3, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 4, chunk 1. Subroutine makeglo redefined at (eval 11) line 7, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 1, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 2, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 3, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 4, chunk 1. Latexmk: This is Latexmk, John Collins, 1 January 2015, version: 4.41. File::Glob::glob() will disappear in perl 5.30. Use File::Glob::bsd_glob() instead. at /usr/bin/latexmk line 7482. Rule 'pdflatex': Rules & subrules not known to be previously run: pdflatex Rule 'pdflatex': The following rules & subrules became out-of-date: 'pdflatex' ------------ Run number 1 of rule 'pdflatex' ------------ Latexmk: applying rule 'pdflatex'... ------------ Running 'pdflatex -interaction=nonstopmode -recorder --jobname="mdolab-idwarp" "idwarp.tex"' ------------ This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./idwarp.tex LaTeX2e <2017-04-15> Babel <3.18> and hyphenation patterns for 84 language(s) loaded. 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[3] [4] Chapter 2. (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pcr.fd) [5] LaTeX Warning: Hyper reference `options:idwarp-options' on page 6 undefined on input line 208. [6] [7] [8] Chapter 3. (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) Underfull \hbox (badness 5374) in paragraph at lines 345--347 \T1/ptm/m/n/10 de-fault is None which Underfull \hbox (badness 10000) in paragraph at lines 345--347 \T1/ptm/m/n/10 will au-to-mat-i-cally use Underfull \hbox (badness 5345) in paragraph at lines 345--347 \T1/ptm/m/n/10 the fol-low-ing bound-ary Underfull \hbox (badness 10000) in paragraph at lines 345--347 \T1/ptm/m/n/10 condti-ions: \T1/pcr/m/n/10 BCWall\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 345--347 \T1/pcr/m/n/10 BCWallViscous\T1/ptm/m/n/10 , Overfull \hbox (23.56123pt too wide) in paragraph at lines 345--347 \T1/pcr/m/n/10 BCWallViscousHeatFlux\T1/ptm/m/n/10 , Overfull \hbox (29.56123pt too wide) in paragraph at lines 345--347 \T1/pcr/m/n/10 BCWallViscousAdiabatic\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 345--347 \T1/ptm/m/n/10 Open-FOAM files, all Underfull \hbox (badness 10000) in paragraph at lines 345--347 \T1/ptm/m/n/10 faces are as-sumed by Underfull \hbox (badness 10000) in paragraph at lines 354--356 \T1/ptm/m/n/10 spec-ify which sur-faces Underfull \hbox (badness 7667) in paragraph at lines 354--356 \T1/ptm/m/n/10 are used to de-ter-mine Underfull \hbox (badness 6910) in paragraph at lines 354--356 \T1/ptm/m/n/10 sym-me-try planes. If Underfull \hbox (badness 10000) in paragraph at lines 354--356 \T1/ptm/m/n/10 None, ID-warp will Underfull \hbox (badness 10000) in paragraph at lines 354--356 \T1/ptm/m/n/10 au-to-mat-i-cally use the Underfull \hbox (badness 10000) in paragraph at lines 354--356 \T1/pcr/m/n/10 BCSymmetryPlane Underfull \hbox (badness 10000) in paragraph at lines 363--365 \T1/ptm/m/n/10 itly de-fine sym-me-try Underfull \hbox (badness 10000) in paragraph at lines 363--365 \T1/ptm/m/n/10 con-di-tions ID-Warp is Underfull \hbox (badness 10000) in paragraph at lines 363--365 \T1/ptm/m/n/10 method for spec-i-fy-ing Underfull \hbox (badness 10000) in paragraph at lines 363--365 \T1/ptm/m/n/10 sym-me-try for un-struc- Underfull \hbox (badness 7649) in paragraph at lines 363--365 \T1/ptm/m/n/10 tured CGNS files and Underfull \hbox (badness 10000) in paragraph at lines 363--365 \T1/pcr/m/n/10 symmetrySurfaces Underfull \hbox (badness 10000) in paragraph at lines 363--365 \T1/ptm/m/n/10 op-tion to be ac-tive, Underfull \hbox (badness 10000) in paragraph at lines 363--365 \T1/pcr/m/n/10 symmetryPlanes Underfull \hbox (badness 10000) in paragraph at lines 363--365 \T1/ptm/m/n/10 must be None. If Underfull \hbox (badness 10000) in paragraph at lines 363--365 \T1/pcr/m/n/10 symmetryPlanes \T1/ptm/m/n/10 is Underfull \hbox (badness 10000) in paragraph at lines 363--365 \T1/ptm/m/n/10 de-fines two sym-me-try Underfull \hbox (badness 10000) in paragraph at lines 363--365 \T1/ptm/m/n/10 planes us-ing a point- Underfull \hbox (badness 5161) in paragraph at lines 363--365 \T1/ptm/m/n/10 pt=(x1,y1,z1) with nor- Underfull \hbox (badness 10000) in paragraph at lines 363--365 \T1/ptm/m/n/10 The nor-mal di-rec-tion Underfull \hbox (badness 10000) in paragraph at lines 399--401 []|\T1/ptm/m/n/10 This value de-ter-mines Underfull \hbox (badness 10000) in paragraph at lines 399--401 \T1/ptm/m/n/10 re-gion be-tween where Underfull \hbox (badness 5490) in paragraph at lines 423--424 []\T1/pcr/m/n/10 exact\T1/ptm/m/n/10 : This is Underfull \hbox (badness 10000) in paragraph at lines 423--424 \T1/ptm/m/n/10 for de-bug-ging Underfull \hbox (badness 10000) in paragraph at lines 423--424 \T1/ptm/m/n/10 or com-par-i-son Overfull \hbox (9.06123pt too wide) in paragraph at lines 446--447 []|\T1/pcr/m/n/10 zeroCornerRotations| [9] Overfull \vbox (2495.16985pt too high) has occurred while \output is active [10] Chapter 4. [11] Underfull \hbox (badness 5893) in paragraph at lines 704--704 []\T1/ptm/m/it/10 dXv=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 solverVec=True\T1/pt m/m/n/10 , \T1/ptm/m/it/10 dof-S-tart=0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 dofEnd= 10\T1/ptm/m/n/10 , \T1/ptm/m/it/10 h=1e-06\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ran- dom- [12] [13] [14] [15] [16] Chapter 5. [17] [18] Chapter 6. No file mdolab-idwarp.ind. [19] (./mdolab-idwarp.aux) Package rerunfilecheck Warning: File `mdolab-idwarp.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on mdolab-idwarp.pdf (23 pages, 140005 bytes). Transcript written on mdolab-idwarp.log. Latexmk: Index file 'mdolab-idwarp.idx' was written Latexmk: Missing input file: 'mdolab-idwarp.ind' from line 'No file mdolab-idwarp.ind.' Latexmk: References changed. Latexmk: References changed. Latexmk: Log file says output to 'mdolab-idwarp.pdf' Rule 'makeindex mdolab-idwarp.idx': File changes, etc: Non-existent destination files: 'mdolab-idwarp.ind' ------------ Run number 1 of rule 'makeindex mdolab-idwarp.idx' ------------ Latexmk: applying rule 'makeindex mdolab-idwarp.idx'... ------------ Running 'makeindex -s python.ist -o "mdolab-idwarp.ind" "mdolab-idwarp.idx"' ------------ This is makeindex, version 2.15 [TeX Live 2017] (kpathsea + Thai support). Scanning style file ./python.ist.......done (7 attributes redefined, 0 ignored). Scanning input file mdolab-idwarp.idx....done (28 entries accepted, 0 rejected). Sorting entries....done (160 comparisons). Generating output file mdolab-idwarp.ind....done (70 lines written, 0 warnings). Output written in mdolab-idwarp.ind. Transcript written in mdolab-idwarp.ilg. Rule 'pdflatex': File changes, etc: Changed files, or newly in use since previous run(s): 'mdolab-idwarp.aux' 'mdolab-idwarp.ind' ------------ Run number 2 of rule 'pdflatex' ------------ ------------ Running 'pdflatex -interaction=nonstopmode -recorder --jobname="mdolab-idwarp" "idwarp.tex"' ------------ Latexmk: applying rule 'pdflatex'... This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./idwarp.tex LaTeX2e <2017-04-15> Babel <3.18> and hyphenation patterns for 84 language(s) loaded. 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(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) Underfull \hbox (badness 5374) in paragraph at lines 345--347 \T1/ptm/m/n/10 de-fault is None which Underfull \hbox (badness 10000) in paragraph at lines 345--347 \T1/ptm/m/n/10 will au-to-mat-i-cally use Underfull \hbox (badness 5345) in paragraph at lines 345--347 \T1/ptm/m/n/10 the fol-low-ing bound-ary Underfull \hbox (badness 10000) in paragraph at lines 345--347 \T1/ptm/m/n/10 condti-ions: \T1/pcr/m/n/10 BCWall\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 345--347 \T1/pcr/m/n/10 BCWallViscous\T1/ptm/m/n/10 , Overfull \hbox (23.56123pt too wide) in paragraph at lines 345--347 \T1/pcr/m/n/10 BCWallViscousHeatFlux\T1/ptm/m/n/10 , Overfull \hbox (29.56123pt too wide) in paragraph at lines 345--347 \T1/pcr/m/n/10 BCWallViscousAdiabatic\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 345--347 \T1/ptm/m/n/10 Open-FOAM files, all Underfull \hbox (badness 10000) in paragraph at lines 345--347 \T1/ptm/m/n/10 faces are as-sumed by Underfull \hbox (badness 10000) in paragraph at lines 354--356 \T1/ptm/m/n/10 spec-ify which sur-faces Underfull \hbox (badness 7667) in paragraph at lines 354--356 \T1/ptm/m/n/10 are used to de-ter-mine Underfull \hbox (badness 6910) in paragraph at lines 354--356 \T1/ptm/m/n/10 sym-me-try planes. 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(rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on mdolab-idwarp.pdf (25 pages, 145619 bytes). Transcript written on mdolab-idwarp.log. Latexmk: Index file 'mdolab-idwarp.idx' was written Latexmk: References changed. Latexmk: Log file says output to 'mdolab-idwarp.pdf' Rule 'pdflatex': File changes, etc: Changed files, or newly in use since previous run(s): 'mdolab-idwarp.aux' 'mdolab-idwarp.out' 'mdolab-idwarp.toc' ------------ Run number 3 of rule 'pdflatex' ------------ ------------ Running 'pdflatex -interaction=nonstopmode -recorder --jobname="mdolab-idwarp" "idwarp.tex"' ------------ Latexmk: applying rule 'pdflatex'... 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(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) Underfull \hbox (badness 5374) in paragraph at lines 345--347 \T1/ptm/m/n/10 de-fault is None which Underfull \hbox (badness 10000) in paragraph at lines 345--347 \T1/ptm/m/n/10 will au-to-mat-i-cally use Underfull \hbox (badness 5345) in paragraph at lines 345--347 \T1/ptm/m/n/10 the fol-low-ing bound-ary Underfull \hbox (badness 10000) in paragraph at lines 345--347 \T1/ptm/m/n/10 condti-ions: \T1/pcr/m/n/10 BCWall\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 345--347 \T1/pcr/m/n/10 BCWallViscous\T1/ptm/m/n/10 , Overfull \hbox (23.56123pt too wide) in paragraph at lines 345--347 \T1/pcr/m/n/10 BCWallViscousHeatFlux\T1/ptm/m/n/10 , Overfull \hbox (29.56123pt too wide) in paragraph at lines 345--347 \T1/pcr/m/n/10 BCWallViscousAdiabatic\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 345--347 \T1/ptm/m/n/10 Open-FOAM files, all Underfull \hbox (badness 10000) in paragraph at lines 345--347 \T1/ptm/m/n/10 faces are as-sumed by Underfull \hbox (badness 10000) in paragraph at lines 354--356 \T1/ptm/m/n/10 spec-ify which sur-faces Underfull \hbox (badness 7667) in paragraph at lines 354--356 \T1/ptm/m/n/10 are used to de-ter-mine Underfull \hbox (badness 6910) in paragraph at lines 354--356 \T1/ptm/m/n/10 sym-me-try planes. 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Transcript written on mdolab-idwarp.log. Latexmk: Index file 'mdolab-idwarp.idx' was written Latexmk: Log file says output to 'mdolab-idwarp.pdf' Latexmk: All targets (mdolab-idwarp.pdf) are up-to-date [rtd-command-info] start-time: 2021-01-25T15:53:56.121671Z, end-time: 2021-01-25T15:53:56.187199Z, duration: 0, exit-code: 0 mv -f /home/docs/checkouts/readthedocs.org/user_builds/mdolab-idwarp/checkouts/latest/doc/_build/latex/mdolab-idwarp.pdf /home/docs/checkouts/readthedocs.org/user_builds/mdolab-idwarp/artifacts/latest/sphinx_pdf/mdolab-idwarp.pdf [rtd-command-info] start-time: 2021-01-25T15:53:56.387566Z, end-time: 2021-01-25T15:53:57.941343Z, duration: 1, exit-code: 0 python -m sphinx -T -b epub -d _build/doctrees-epub -D language=en . _build/epub Running Sphinx v3.4.3 loading translations [en]... done making output directory... done WARNING: html_static_path entry '_static' does not exist WARNING: conf value "version" should not be empty for EPUB3 building [mo]: targets for 0 po files that are out of date building [epub]: targets for 7 source files that are out of date updating environment: [new config] 7 added, 0 changed, 0 removed reading sources... [ 14%] API reading sources... [ 28%] MultiUSMesh reading sources... [ 42%] USMesh reading sources... [ 57%] building reading sources... [ 71%] index reading sources... [ 85%] options reading sources... [100%] tutorial looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 14%] API writing output... [ 28%] MultiUSMesh writing output... [ 42%] USMesh writing output... [ 57%] building writing output... [ 71%] index writing output... [ 85%] options writing output... [100%] tutorial generating indices... genindex done writing additional pages... done copying static files... done copying extra files... done writing mimetype file... writing META-INF/container.xml file... writing content.opf file... writing nav.xhtml file... writing toc.ncx file... writing IDWarp.epub file... build succeeded, 2 warnings. The ePub file is in _build/epub. Updating searchtools for Read the Docs search... [rtd-command-info] start-time: 2021-01-25T15:53:58.303947Z, end-time: 2021-01-25T15:53:58.359001Z, duration: 0, exit-code: 0 mv -f /home/docs/checkouts/readthedocs.org/user_builds/mdolab-idwarp/checkouts/latest/doc/_build/epub/IDWarp.epub /home/docs/checkouts/readthedocs.org/user_builds/mdolab-idwarp/artifacts/latest/sphinx_epub/mdolab-idwarp.epub