Read the Docs build information Build id: 534876 Project: mdolab-idwarp Version: latest Commit: 444dbb47f7707f29b5b998fb90825030721262f8 Date: 2021-01-18T22:20:14.872226Z State: finished Success: True [rtd-command-info] start-time: 2021-01-18T22:20:17.214748Z, end-time: 2021-01-18T22:20:18.558903Z, duration: 1, exit-code: 0 git clone --no-single-branch --depth 50 https://github.com/mdolab/idwarp.git . Cloning into '.'... [rtd-command-info] start-time: 2021-01-18T22:20:19.272034Z, end-time: 2021-01-18T22:20:19.383298Z, duration: 0, exit-code: 0 git checkout --force origin/master Note: checking out 'origin/master'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at 444dbb4 Updated bash script (#39) [rtd-command-info] start-time: 2021-01-18T22:20:19.565019Z, end-time: 2021-01-18T22:20:19.621895Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2021-01-18T22:20:20.864996Z, end-time: 2021-01-18T22:20:24.889211Z, duration: 4, exit-code: 0 python3.7 -mvirtualenv Using base prefix '/home/docs/.pyenv/versions/3.7.9' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-idwarp/envs/latest/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-idwarp/envs/latest/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2021-01-18T22:20:25.052372Z, end-time: 2021-01-18T22:20:26.633222Z, duration: 1, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip Requirement already satisfied: pip in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-idwarp/envs/latest/lib/python3.7/site-packages (20.3.3) [rtd-command-info] start-time: 2021-01-18T22:20:26.940678Z, end-time: 2021-01-18T22:20:35.893261Z, duration: 8, exit-code: 0 python -m pip install --upgrade --no-cache-dir setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 six commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<2.2 Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) Collecting docutils==0.14 Downloading docutils-0.14-py3-none-any.whl (543 kB) Collecting mock==1.0.1 Downloading mock-1.0.1.zip (861 kB) Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting readthedocs-sphinx-ext<2.2 Downloading readthedocs_sphinx_ext-2.1.2-py2.py3-none-any.whl (11 kB) Collecting sphinx<2 Downloading Sphinx-1.8.5-py2.py3-none-any.whl (3.1 MB) Collecting six Downloading six-1.15.0-py2.py3-none-any.whl (10 kB) Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) Collecting babel!=2.0,>=1.3 Downloading Babel-2.9.0-py2.py3-none-any.whl (8.8 MB) Collecting Jinja2>=2.9 Downloading Jinja2-2.11.2-py2.py3-none-any.whl (125 kB) Collecting MarkupSafe>=0.23 Downloading MarkupSafe-1.1.1-cp37-cp37m-manylinux1_x86_64.whl (27 kB) Collecting Pygments>=2.0 Downloading Pygments-2.7.4-py3-none-any.whl (950 kB) Collecting pytz>=2015.7 Downloading pytz-2020.5-py2.py3-none-any.whl (510 kB) Collecting requests Downloading requests-2.25.1-py2.py3-none-any.whl (61 kB) Collecting certifi>=2017.4.17 Downloading certifi-2020.12.5-py2.py3-none-any.whl (147 kB) Collecting chardet<5,>=3.0.2 Downloading chardet-4.0.0-py2.py3-none-any.whl (178 kB) Collecting idna<3,>=2.5 Downloading idna-2.10-py2.py3-none-any.whl (58 kB) Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.0.0-py2.py3-none-any.whl (97 kB) Collecting urllib3<1.27,>=1.21.1 Downloading urllib3-1.26.2-py2.py3-none-any.whl (136 kB) Collecting future Downloading future-0.18.2.tar.gz (829 kB) Collecting imagesize Downloading imagesize-1.2.0-py2.py3-none-any.whl (4.8 kB) Collecting packaging Downloading packaging-20.8-py2.py3-none-any.whl (39 kB) Collecting pyparsing>=2.0.2 Downloading pyparsing-2.4.7-py2.py3-none-any.whl (67 kB) Collecting sphinxcontrib-websupport Downloading sphinxcontrib_websupport-1.2.4-py2.py3-none-any.whl (39 kB) Collecting sphinxcontrib-serializinghtml Downloading sphinxcontrib_serializinghtml-1.1.4-py2.py3-none-any.whl (89 kB) Collecting setuptools==41.0.1 Downloading setuptools-41.0.1-py2.py3-none-any.whl (575 kB) Building wheels for collected packages: mock, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23755 sha256=79adf9e566f865b650d6a656a36fc27ccbc692cf96176bc7e02af73ca85d1f47 Stored in directory: /tmp/pip-ephem-wheel-cache-o09nk0qt/wheels/7a/94/b1/0fdc5339a5bd487a5cc15421ec200d9ba3e2aa7190e4a727f1 Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491059 sha256=017121a43327a147c4aa1bd21e518fc2343b70b39af449335da522f0e51e0e91 Stored in directory: /tmp/pip-ephem-wheel-cache-o09nk0qt/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0 Successfully built mock future Installing collected packages: urllib3, sphinxcontrib-serializinghtml, pytz, pyparsing, MarkupSafe, idna, chardet, certifi, sphinxcontrib-websupport, snowballstemmer, six, setuptools, requests, Pygments, packaging, Jinja2, imagesize, future, docutils, babel, alabaster, sphinx, commonmark, sphinx-rtd-theme, recommonmark, readthedocs-sphinx-ext, pillow, mock Attempting uninstall: setuptools Found existing installation: setuptools 51.3.3 Uninstalling setuptools-51.3.3: Successfully uninstalled setuptools-51.3.3 Successfully installed Jinja2-2.11.2 MarkupSafe-1.1.1 Pygments-2.7.4 alabaster-0.7.12 babel-2.9.0 certifi-2020.12.5 chardet-4.0.0 commonmark-0.8.1 docutils-0.14 future-0.18.2 idna-2.10 imagesize-1.2.0 mock-1.0.1 packaging-20.8 pillow-5.4.1 pyparsing-2.4.7 pytz-2020.5 readthedocs-sphinx-ext-2.1.2 recommonmark-0.5.0 requests-2.25.1 setuptools-41.0.1 six-1.15.0 snowballstemmer-2.0.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-serializinghtml-1.1.4 sphinxcontrib-websupport-1.2.4 urllib3-1.26.2 [rtd-command-info] start-time: 2021-01-18T22:20:36.036541Z, end-time: 2021-01-18T22:20:39.240960Z, duration: 3, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r doc/requirements.txt Collecting numpydoc Downloading numpydoc-1.1.0-py3-none-any.whl (47 kB) Requirement already satisfied: Jinja2>=2.3 in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-idwarp/envs/latest/lib/python3.7/site-packages (from numpydoc->-r doc/requirements.txt (line 1)) (2.11.2) Requirement already satisfied: sphinx>=1.6.5 in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-idwarp/envs/latest/lib/python3.7/site-packages (from numpydoc->-r doc/requirements.txt (line 1)) (1.8.5) Requirement already satisfied: MarkupSafe>=0.23 in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-idwarp/envs/latest/lib/python3.7/site-packages (from Jinja2>=2.3->numpydoc->-r doc/requirements.txt (line 1)) (1.1.1) Requirement already satisfied: babel!=2.0,>=1.3 in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-idwarp/envs/latest/lib/python3.7/site-packages (from sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (2.9.0) Requirement already satisfied: six>=1.5 in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-idwarp/envs/latest/lib/python3.7/site-packages (from sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (1.15.0) Requirement already satisfied: snowballstemmer>=1.1 in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-idwarp/envs/latest/lib/python3.7/site-packages (from sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (2.0.0) Requirement already satisfied: alabaster<0.8,>=0.7 in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-idwarp/envs/latest/lib/python3.7/site-packages (from sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (0.7.12) Requirement already satisfied: Pygments>=2.0 in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-idwarp/envs/latest/lib/python3.7/site-packages (from sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (2.7.4) Requirement already satisfied: docutils>=0.11 in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-idwarp/envs/latest/lib/python3.7/site-packages (from sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (0.14) Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-idwarp/envs/latest/lib/python3.7/site-packages (from sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (41.0.1) Requirement already satisfied: sphinxcontrib-websupport in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-idwarp/envs/latest/lib/python3.7/site-packages (from sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (1.2.4) Requirement already satisfied: requests>=2.0.0 in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-idwarp/envs/latest/lib/python3.7/site-packages (from sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (2.25.1) Requirement already satisfied: imagesize in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-idwarp/envs/latest/lib/python3.7/site-packages (from sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (1.2.0) Requirement already satisfied: packaging in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-idwarp/envs/latest/lib/python3.7/site-packages (from sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (20.8) Requirement already satisfied: pytz>=2015.7 in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-idwarp/envs/latest/lib/python3.7/site-packages (from babel!=2.0,>=1.3->sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (2020.5) Requirement already satisfied: certifi>=2017.4.17 in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-idwarp/envs/latest/lib/python3.7/site-packages (from requests>=2.0.0->sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (2020.12.5) Requirement already satisfied: chardet<5,>=3.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-idwarp/envs/latest/lib/python3.7/site-packages (from requests>=2.0.0->sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (4.0.0) Requirement already satisfied: urllib3<1.27,>=1.21.1 in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-idwarp/envs/latest/lib/python3.7/site-packages (from requests>=2.0.0->sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (1.26.2) Requirement already satisfied: idna<3,>=2.5 in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-idwarp/envs/latest/lib/python3.7/site-packages (from requests>=2.0.0->sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (2.10) Collecting sphinx_mdolab_theme Downloading sphinx_mdolab_theme-0.2.8-py3-none-any.whl (6.7 kB) Requirement already satisfied: sphinx-rtd-theme in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-idwarp/envs/latest/lib/python3.7/site-packages (from sphinx_mdolab_theme->-r doc/requirements.txt (line 2)) (0.4.3) Collecting sphinx>=1.6.5 Downloading Sphinx-3.4.3-py3-none-any.whl (2.9 MB) Requirement already satisfied: sphinxcontrib-serializinghtml in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-idwarp/envs/latest/lib/python3.7/site-packages (from sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (1.1.4) Requirement already satisfied: pyparsing>=2.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-idwarp/envs/latest/lib/python3.7/site-packages (from packaging->sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (2.4.7) Collecting pyyaml Downloading PyYAML-5.3.1.tar.gz (269 kB) Collecting sphinxcontrib-applehelp Downloading sphinxcontrib_applehelp-1.0.2-py2.py3-none-any.whl (121 kB) Collecting sphinxcontrib-devhelp Downloading sphinxcontrib_devhelp-1.0.2-py2.py3-none-any.whl (84 kB) Collecting sphinxcontrib-htmlhelp Downloading sphinxcontrib_htmlhelp-1.0.3-py2.py3-none-any.whl (96 kB) Collecting sphinxcontrib-jsmath Downloading sphinxcontrib_jsmath-1.0.1-py2.py3-none-any.whl (5.1 kB) Collecting sphinxcontrib-qthelp Downloading sphinxcontrib_qthelp-1.0.3-py2.py3-none-any.whl (90 kB) Building wheels for collected packages: pyyaml Building wheel for pyyaml (setup.py): started Building wheel for pyyaml (setup.py): finished with status 'done' Created wheel for pyyaml: filename=PyYAML-5.3.1-cp37-cp37m-linux_x86_64.whl size=44620 sha256=6d4799e48e8887fed5f8862d5e756ad903df0b6f3c35f12636bd7fda8d6db0b8 Stored in directory: /tmp/pip-ephem-wheel-cache-r2yts3xp/wheels/5e/03/1e/e1e954795d6f35dfc7b637fe2277bff021303bd9570ecea653 Successfully built pyyaml Installing collected packages: sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, sphinx, pyyaml, sphinx-mdolab-theme, numpydoc Attempting uninstall: sphinx Found existing installation: Sphinx 1.8.5 Uninstalling Sphinx-1.8.5: Successfully uninstalled Sphinx-1.8.5 Successfully installed numpydoc-1.1.0 pyyaml-5.3.1 sphinx-3.4.3 sphinx-mdolab-theme-0.2.8 sphinxcontrib-applehelp-1.0.2 sphinxcontrib-devhelp-1.0.2 sphinxcontrib-htmlhelp-1.0.3 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-qthelp-1.0.3 [rtd-command-info] start-time: 2021-01-18T22:20:40.348021Z, end-time: 2021-01-18T22:20:40.420067Z, duration: 0, exit-code: 0 cat doc/conf.py from sphinx_mdolab_theme.config import * # noqa: F403 # -- Path setup -------------------------------------------------------------- # If extensions (or modules to document with autodoc) are in another directory, # add these directories to sys.path here. If the directory is relative to the # documentation root, use os.path.abspath to make it absolute, like shown here. import os import sys sys.path.insert(0, os.path.abspath("../")) # -- Project information ----------------------------------------------------- project = "IDWarp" # -- General configuration ----------------------------------------------------- # Built-in Sphinx extensions are already contained in the imported variable # here we add external extensions, which must also be added to requirements.txt # so that RTD can import and use them extensions.extend(["numpydoc"]) # noqa: F405 # mock import for autodoc autodoc_mock_imports = ["numpy", "mpi4py", "petsc4py"] ########################################################################### # auto-created readthedocs.org specific configuration # ########################################################################### # # The following code was added during an automated build on readthedocs.org # It is auto created and injected for every build. The result is based on the # conf.py.tmpl file found in the readthedocs.org codebase: # https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl # import importlib import sys import os.path from six import string_types from sphinx import version_info # Get suffix for proper linking to GitHub # This is deprecated in Sphinx 1.3+, # as each page can have its own suffix if globals().get('source_suffix', False): if isinstance(source_suffix, string_types): SUFFIX = source_suffix elif isinstance(source_suffix, (list, tuple)): # Sphinx >= 1.3 supports list/tuple to define multiple suffixes SUFFIX = source_suffix[0] elif isinstance(source_suffix, dict): # Sphinx >= 1.8 supports a mapping dictionary for multiple suffixes SUFFIX = list(source_suffix.keys())[0] # make a ``list()`` for py2/py3 compatibility else: # default to .rst SUFFIX = '.rst' else: SUFFIX = '.rst' # Add RTD Static Path. Add to the end because it overwrites previous files. if not 'html_static_path' in globals(): html_static_path = [] if os.path.exists('_static'): html_static_path.append('_static') # Add RTD Theme only if they aren't overriding it already using_rtd_theme = ( ( 'html_theme' in globals() and html_theme in ['default'] and # Allow people to bail with a hack of having an html_style 'html_style' not in globals() ) or 'html_theme' not in globals() ) if using_rtd_theme: theme = importlib.import_module('sphinx_rtd_theme') html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} if 'html_theme_path' in globals(): html_theme_path.append(theme.get_html_theme_path()) else: html_theme_path = [theme.get_html_theme_path()] if globals().get('websupport2_base_url', False): websupport2_base_url = 'https://readthedocs.com/websupport' websupport2_static_url = 'https://assets.readthedocs.com/' #Add project information to the template context. context = { 'using_theme': using_rtd_theme, 'html_theme': html_theme, 'current_version': "latest", 'version_slug': "latest", 'MEDIA_URL': "https://media.readthedocs.com/media/", 'STATIC_URL': "https://assets.readthedocs.com/", 'PRODUCTION_DOMAIN': "readthedocs.com", 'versions': [ ("latest", "/en/latest/"), ("stable", "/en/stable/"), ], 'downloads': [ ("pdf", "//mdolab-idwarp.readthedocs-hosted.com/_/downloads/en/latest/pdf/"), ("html", "//mdolab-idwarp.readthedocs-hosted.com/_/downloads/en/latest/htmlzip/"), ("epub", "//mdolab-idwarp.readthedocs-hosted.com/_/downloads/en/latest/epub/"), ], 'subprojects': [ ], 'slug': 'mdolab-idwarp', 'name': u'idwarp', 'rtd_language': u'en', 'programming_language': u'words', 'canonical_url': 'https://mdolab-idwarp.readthedocs-hosted.com/en/latest/', 'analytics_code': 'None', 'single_version': False, 'conf_py_path': '/doc/', 'api_host': 'https://readthedocs.com', 'github_user': 'mdolab', 'proxied_api_host': '/_', 'github_repo': 'idwarp', 'github_version': 'master', 'display_github': True, 'bitbucket_user': 'None', 'bitbucket_repo': 'None', 'bitbucket_version': 'master', 'display_bitbucket': False, 'gitlab_user': 'None', 'gitlab_repo': 'None', 'gitlab_version': 'master', 'display_gitlab': False, 'READTHEDOCS': True, 'using_theme': (html_theme == "default"), 'new_theme': (html_theme == "sphinx_rtd_theme"), 'source_suffix': SUFFIX, 'ad_free': False, 'docsearch_disabled': False, 'user_analytics_code': '', 'global_analytics_code': 'UA-17997319-2', 'commit': '444dbb47', } # For sphinx >=1.8 we can use html_baseurl to set the canonical URL. # https://www.sphinx-doc.org/en/master/usage/configuration.html#confval-html_baseurl if version_info >= (1, 8): if not globals().get('html_baseurl'): html_baseurl = context['canonical_url'] context['canonical_url'] = None if 'html_context' in globals(): html_context.update(context) else: html_context = context # Add custom RTD extension if 'extensions' in globals(): # Insert at the beginning because it can interfere # with other extensions. # See https://github.com/rtfd/readthedocs.org/pull/4054 extensions.insert(0, "readthedocs_ext.readthedocs") else: extensions = ["readthedocs_ext.readthedocs"] # Add External version warning banner to the external version documentation if 'branch' == 'external': extensions.insert(1, "readthedocs_ext.external_version_warning") project_language = 'en' # User's Sphinx configurations language_user = globals().get('language', None) latex_engine_user = globals().get('latex_engine', None) latex_elements_user = globals().get('latex_elements', None) # Remove this once xindy gets installed in Docker image and XINDYOPS # env variable is supported # https://github.com/rtfd/readthedocs-docker-images/pull/98 latex_use_xindy = False chinese = any([ language_user in ('zh_CN', 'zh_TW'), project_language in ('zh_CN', 'zh_TW'), ]) japanese = any([ language_user == 'ja', project_language == 'ja', ]) if chinese: latex_engine = latex_engine_user or 'xelatex' latex_elements_rtd = { 'preamble': '\\usepackage[UTF8]{ctex}\n', } latex_elements = latex_elements_user or latex_elements_rtd elif japanese: latex_engine = latex_engine_user or 'platex' # Make sure our build directory is always excluded exclude_patterns = globals().get('exclude_patterns', []) exclude_patterns.extend(['_build']) [rtd-command-info] start-time: 2021-01-18T22:20:40.524283Z, end-time: 2021-01-18T22:20:42.237826Z, duration: 1, exit-code: 0 python sphinx-build -T -E -b readthedocs -d _build/doctrees-readthedocs -D language=en . _build/html Running Sphinx v3.4.3 loading translations [en]... done making output directory... done WARNING: html_static_path entry '_static' does not exist building [mo]: targets for 0 po files that are out of date building [readthedocs]: targets for 7 source files that are out of date updating environment: [new config] 7 added, 0 changed, 0 removed reading sources... [ 14%] API reading sources... [ 28%] MultiUSMesh reading sources... [ 42%] USMesh reading sources... [ 57%] building reading sources... [ 71%] index reading sources... [ 85%] options reading sources... [100%] tutorial looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 14%] API writing output... [ 28%] MultiUSMesh writing output... [ 42%] USMesh writing output... [ 57%] building writing output... [ 71%] index writing output... [ 85%] options writing output... [100%] tutorial generating indices... genindex done highlighting module code... [ 50%] idwarp.MultiUnstructuredMesh highlighting module code... [100%] idwarp.UnstructuredMesh writing additional pages... search done copying static files... done copying extra files... done dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 1 warning. The HTML pages are in _build/html. Updating searchtools for Read the Docs search... [rtd-command-info] start-time: 2021-01-18T22:20:42.420343Z, end-time: 2021-01-18T22:20:43.825419Z, duration: 1, exit-code: 0 python sphinx-build -T -b readthedocssinglehtmllocalmedia -d _build/doctrees-readthedocssinglehtmllocalmedia -D language=en . _build/localmedia Running Sphinx v3.4.3 loading translations [en]... done making output directory... done WARNING: html_static_path entry '_static' does not exist building [mo]: targets for 0 po files that are out of date building [readthedocssinglehtmllocalmedia]: all documents updating environment: [new config] 7 added, 0 changed, 0 removed reading sources... [ 14%] API reading sources... [ 28%] MultiUSMesh reading sources... [ 42%] USMesh reading sources... [ 57%] building reading sources... [ 71%] index reading sources... [ 85%] options reading sources... [100%] tutorial looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done assembling single document... building tutorial options API USMesh MultiUSMesh done writing... done writing additional files... done copying static files... done copying extra files... done dumping object inventory... done build succeeded, 1 warning. The HTML page is in _build/localmedia. Updating searchtools for Read the Docs search... [rtd-command-info] start-time: 2021-01-18T22:20:44.003766Z, end-time: 2021-01-18T22:20:45.352129Z, duration: 1, exit-code: 0 python sphinx-build -b latex -D language=en -d _build/doctrees . _build/latex Running Sphinx v3.4.3 loading translations [en]... done making output directory... done WARNING: html_static_path entry '_static' does not exist building [mo]: targets for 0 po files that are out of date building [latex]: all documents updating environment: [new config] 7 added, 0 changed, 0 removed reading sources... [ 14%] API reading sources... [ 28%] MultiUSMesh reading sources... [ 42%] USMesh reading sources... [ 57%] building reading sources... [ 71%] index reading sources... [ 85%] options reading sources... [100%] tutorial looking for now-outdated files... none found pickling environment... done checking consistency... done processing idwarp.tex... index building tutorial options API USMesh MultiUSMesh resolving references... done writing... done copying TeX support files... copying TeX support files... done build succeeded, 1 warning. The LaTeX files are in _build/latex. Run 'make' in that directory to run these through (pdf)latex (use `make latexpdf' here to do that automatically). WARNING: Missing searchtools: /home/docs/checkouts/readthedocs.org/user_builds/mdolab-idwarp/checkouts/latest/doc/_build/latex/_static/searchtools.js [rtd-command-info] start-time: 2021-01-18T22:20:45.609996Z, end-time: 2021-01-18T22:20:45.669191Z, duration: 0, exit-code: 0 cat latexmkrc $latex = 'latex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $pdflatex = 'pdflatex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $lualatex = 'lualatex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $xelatex = 'xelatex --no-pdf ' . $ENV{'LATEXOPTS'} . ' %O %S'; $makeindex = 'makeindex -s python.ist %O -o %D %S'; add_cus_dep( "glo", "gls", 0, "makeglo" ); sub makeglo { return system( "makeindex -s gglo.ist -o '$_[0].gls' '$_[0].glo'" ); } [rtd-command-info] start-time: 2021-01-18T22:20:45.921183Z, end-time: 2021-01-18T22:20:47.337290Z, duration: 1, exit-code: 0 latexmk -r latexmkrc -pdf -f -dvi- -ps- -jobname=mdolab-idwarp -interaction=nonstopmode Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 1, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 2, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 3, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 4, chunk 1. Subroutine makeglo redefined at (eval 11) line 7, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 1, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 2, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 3, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 4, chunk 1. Latexmk: This is Latexmk, John Collins, 1 January 2015, version: 4.41. File::Glob::glob() will disappear in perl 5.30. Use File::Glob::bsd_glob() instead. at /usr/bin/latexmk line 7482. Rule 'pdflatex': Rules & subrules not known to be previously run: pdflatex Rule 'pdflatex': The following rules & subrules became out-of-date: 'pdflatex' ------------ Run number 1 of rule 'pdflatex' ------------ ------------ Running 'pdflatex -interaction=nonstopmode -recorder --jobname="mdolab-idwarp" "idwarp.tex"' ------------ Latexmk: applying rule 'pdflatex'... This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./idwarp.tex LaTeX2e <2017-04-15> Babel <3.18> and hyphenation patterns for 84 language(s) loaded. 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[11] Underfull \hbox (badness 5893) in paragraph at lines 698--698 []\T1/ptm/m/it/10 dXv=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 solverVec=True\T1/pt m/m/n/10 , \T1/ptm/m/it/10 dof-S-tart=0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 dofEnd= 10\T1/ptm/m/n/10 , \T1/ptm/m/it/10 h=1e-06\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ran- dom- [12] [13] [14] [15] [16] Chapter 5. [17] [18] Chapter 6. No file mdolab-idwarp.ind. [19] (./mdolab-idwarp.aux) Package rerunfilecheck Warning: File `mdolab-idwarp.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on mdolab-idwarp.pdf (23 pages, 138681 bytes). Transcript written on mdolab-idwarp.log. Latexmk: Index file 'mdolab-idwarp.idx' was written Latexmk: Missing input file: 'mdolab-idwarp.ind' from line 'No file mdolab-idwarp.ind.' Latexmk: References changed. Latexmk: References changed. Latexmk: Log file says output to 'mdolab-idwarp.pdf' Rule 'makeindex mdolab-idwarp.idx': File changes, etc: Non-existent destination files: 'mdolab-idwarp.ind' ------------ Run number 1 of rule 'makeindex mdolab-idwarp.idx' ------------ ------------ Running 'makeindex -s python.ist -o "mdolab-idwarp.ind" "mdolab-idwarp.idx"' ------------ Latexmk: applying rule 'makeindex mdolab-idwarp.idx'... This is makeindex, version 2.15 [TeX Live 2017] (kpathsea + Thai support). Scanning style file ./python.ist.......done (7 attributes redefined, 0 ignored). Scanning input file mdolab-idwarp.idx....done (28 entries accepted, 0 rejected). Sorting entries....done (160 comparisons). Generating output file mdolab-idwarp.ind....done (70 lines written, 0 warnings). Output written in mdolab-idwarp.ind. 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(./mdolab-idwarp.ind [19] [20] Underfull \hbox (badness 10000) in paragraph at lines 8--9 []\T1/pcr/m/n/10 getCommonGrid() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 id- Underfull \hbox (badness 10000) in paragraph at lines 8--9 \T1/ptm/m/it/10 warp.UnstructuredMesh.USMesh method\T1/ptm/m/n/10 ), Overfull \hbox (8.5303pt too wide) in paragraph at lines 9--11 []\T1/pcr/m/n/10 getdXs() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 id-warp.MultiUnstruct uredMesh.MultiUSMesh Underfull \hbox (badness 10000) in paragraph at lines 11--12 []\T1/pcr/m/n/10 getdXs() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 id-warp.UnstructuredM esh.USMesh Underfull \hbox (badness 10000) in paragraph at lines 12--14 []\T1/pcr/m/n/10 getSolverGrid() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 id- Underfull \hbox (badness 10000) in paragraph at lines 12--14 \T1/ptm/m/it/10 warp.MultiUnstructuredMesh.MultiUSMesh Underfull \hbox (badness 10000) in paragraph at lines 14--15 []\T1/pcr/m/n/10 getSolverGrid() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 id- Underfull \hbox 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warp.MultiUnstructuredMesh.MultiUSMesh Underfull \hbox (badness 10000) in paragraph at lines 29--31 []\T1/pcr/m/n/10 setExternalMeshIndices() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 id- Underfull \hbox (badness 10000) in paragraph at lines 29--31 \T1/ptm/m/it/10 warp.UnstructuredMesh.USMesh method\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 31--33 []\T1/pcr/m/n/10 setSurfaceCoordinates() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 id- Underfull \hbox (badness 10000) in paragraph at lines 31--33 \T1/ptm/m/it/10 warp.MultiUnstructuredMesh.MultiUSMesh Underfull \hbox (badness 10000) in paragraph at lines 33--35 []\T1/pcr/m/n/10 setSurfaceCoordinates() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 id- Underfull \hbox (badness 10000) in paragraph at lines 33--35 \T1/ptm/m/it/10 warp.UnstructuredMesh.USMesh method\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 35--37 []\T1/pcr/m/n/10 setSurfaceDefinition() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 id- Underfull \hbox (badness 10000) in paragraph at lines 35--37 \T1/ptm/m/it/10 warp.MultiUnstructuredMesh.MultiUSMesh Underfull \hbox (badness 10000) in paragraph at lines 37--39 []\T1/pcr/m/n/10 setSurfaceDefinition() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 id- Underfull \hbox (badness 10000) in paragraph at lines 37--39 \T1/ptm/m/it/10 warp.UnstructuredMesh.USMesh method\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 39--41 []\T1/pcr/m/n/10 setSurfaceDefinitionFromFile() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 id- Underfull \hbox (badness 10000) in paragraph at lines 39--41 \T1/ptm/m/it/10 warp.UnstructuredMesh.USMesh method\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 41--43 []\T1/pcr/m/n/10 setSurfaceFromFile() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 id- Underfull \hbox (badness 10000) in paragraph at lines 41--43 \T1/ptm/m/it/10 warp.UnstructuredMesh.USMesh method\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 50--52 []\T1/pcr/m/n/10 verifyWarpDeriv() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 id- Underfull \hbox (badness 10000) in paragraph at lines 50--52 \T1/ptm/m/it/10 warp.UnstructuredMesh.USMesh method\T1/ptm/m/n/10 ), Overfull \hbox (26.5303pt too wide) in paragraph at lines 55--57 []\T1/pcr/m/n/10 warpDeriv() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 id-warp.MultiUnstr ucturedMesh.MultiUSMesh Underfull \hbox (badness 10000) in paragraph at lines 57--58 []\T1/pcr/m/n/10 warpDeriv() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 id-warp.Unstructur edMesh.USMesh Underfull \hbox (badness 10000) in paragraph at lines 58--60 []\T1/pcr/m/n/10 warpDerivFwd() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 id- Underfull \hbox (badness 10000) in paragraph at lines 58--60 \T1/ptm/m/it/10 warp.MultiUnstructuredMesh.MultiUSMesh Underfull \hbox (badness 10000) in paragraph at lines 60--61 []\T1/pcr/m/n/10 warpDerivFwd() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 id- Underfull \hbox (badness 10000) in paragraph at lines 60--61 \T1/ptm/m/it/10 warp.UnstructuredMesh.USMesh method\T1/ptm/m/n/10 ), Overfull \hbox (20.5303pt too wide) in paragraph at lines 61--63 []\T1/pcr/m/n/10 warpMesh() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 id-warp.MultiUnstru cturedMesh.MultiUSMesh Underfull \hbox (badness 10000) in paragraph at lines 63--64 []\T1/pcr/m/n/10 warpMesh() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 id-warp.Unstructure dMesh.USMesh Overfull \hbox (26.5303pt too wide) in paragraph at lines 64--66 []\T1/pcr/m/n/10 writeGrid() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 id-warp.MultiUnstr ucturedMesh.MultiUSMesh Underfull \hbox (badness 10000) in paragraph at lines 66--67 []\T1/pcr/m/n/10 writeGrid() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 id-warp.Unstructur edMesh.USMesh Underfull \hbox (badness 10000) in paragraph at lines 67--69 []\T1/pcr/m/n/10 writeOFGridTecplot() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 id- Underfull \hbox (badness 10000) in paragraph at lines 67--69 \T1/ptm/m/it/10 warp.UnstructuredMesh.USMesh method\T1/ptm/m/n/10 ), [21]) (./mdolab-idwarp.aux) ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on mdolab-idwarp.pdf (25 pages, 145000 bytes). Transcript written on mdolab-idwarp.log. Latexmk: Index file 'mdolab-idwarp.idx' was written Latexmk: Log file says output to 'mdolab-idwarp.pdf' Latexmk: All targets (mdolab-idwarp.pdf) are up-to-date [rtd-command-info] start-time: 2021-01-18T22:20:47.572524Z, end-time: 2021-01-18T22:20:47.626601Z, duration: 0, exit-code: 0 mv -f /home/docs/checkouts/readthedocs.org/user_builds/mdolab-idwarp/checkouts/latest/doc/_build/latex/mdolab-idwarp.pdf /home/docs/checkouts/readthedocs.org/user_builds/mdolab-idwarp/artifacts/latest/sphinx_pdf/mdolab-idwarp.pdf [rtd-command-info] start-time: 2021-01-18T22:20:47.853489Z, end-time: 2021-01-18T22:20:49.311114Z, duration: 1, exit-code: 0 python sphinx-build -T -b epub -d _build/doctrees-epub -D language=en . _build/epub Running Sphinx v3.4.3 loading translations [en]... done making output directory... done WARNING: html_static_path entry '_static' does not exist WARNING: conf value "version" should not be empty for EPUB3 building [mo]: targets for 0 po files that are out of date building [epub]: targets for 7 source files that are out of date updating environment: [new config] 7 added, 0 changed, 0 removed reading sources... [ 14%] API reading sources... [ 28%] MultiUSMesh reading sources... [ 42%] USMesh reading sources... [ 57%] building reading sources... [ 71%] index reading sources... [ 85%] options reading sources... [100%] tutorial looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 14%] API writing output... [ 28%] MultiUSMesh writing output... [ 42%] USMesh writing output... [ 57%] building writing output... [ 71%] index writing output... [ 85%] options writing output... [100%] tutorial generating indices... genindex done writing additional pages... done copying static files... done copying extra files... done writing mimetype file... writing META-INF/container.xml file... writing content.opf file... writing nav.xhtml file... writing toc.ncx file... writing IDWarp.epub file... build succeeded, 2 warnings. The ePub file is in _build/epub. Updating searchtools for Read the Docs search... [rtd-command-info] start-time: 2021-01-18T22:20:49.576479Z, end-time: 2021-01-18T22:20:49.631064Z, duration: 0, exit-code: 0 mv -f /home/docs/checkouts/readthedocs.org/user_builds/mdolab-idwarp/checkouts/latest/doc/_build/epub/IDWarp.epub /home/docs/checkouts/readthedocs.org/user_builds/mdolab-idwarp/artifacts/latest/sphinx_epub/mdolab-idwarp.epub