Read the Docs build information
Build id: 509556
Project: tiledb-inc-tiledb-py
Version: latest
Commit: 4f5108c949ddbd1a594dd1681ed9cc564491f658
Date: 2020-12-16T17:33:35.724266Z
State: finished
Success: True


[rtd-command-info] start-time: 2020-12-16T17:33:37.293170Z, end-time: 2020-12-16T17:33:38.436205Z, duration: 1, exit-code: 0
git clone --no-single-branch --depth 50 https://github.com/TileDB-Inc/TileDB-Py.git .
Cloning into '.'...

[rtd-command-info] start-time: 2020-12-16T17:33:38.930449Z, end-time: 2020-12-16T17:33:38.993864Z, duration: 0, exit-code: 0
git checkout --force origin/dev
Note: checking out 'origin/dev'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by performing another checkout.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -b with the checkout command again. Example:

  git checkout -b <new-branch-name>

HEAD is now at 4f5108c Update HISTORY.md

[rtd-command-info] start-time: 2020-12-16T17:33:39.106622Z, end-time: 2020-12-16T17:33:39.162271Z, duration: 0, exit-code: 0
git clean -d -f -f


[rtd-command-info] start-time: 2020-12-16T17:33:40.307960Z, end-time: 2020-12-16T17:33:44.178971Z, duration: 3, exit-code: 0
python3.7 -mvirtualenv 
Using base prefix '/home/docs/.pyenv/versions/3.7.9'
New python executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/bin/python3.7
Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/bin/python
Installing setuptools, pip, wheel...
done.

[rtd-command-info] start-time: 2020-12-16T17:33:44.456992Z, end-time: 2020-12-16T17:33:46.001440Z, duration: 1, exit-code: 0
python -m pip install --upgrade --no-cache-dir pip
Requirement already satisfied: pip in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages (20.3.3)

[rtd-command-info] start-time: 2020-12-16T17:33:46.157477Z, end-time: 2020-12-16T17:33:55.012825Z, duration: 8, exit-code: 0
python -m pip install --upgrade --no-cache-dir setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 six commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<2.2
Collecting commonmark==0.8.1
  Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB)
Collecting docutils==0.14
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Collecting mock==1.0.1
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Collecting pillow==5.4.1
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Collecting recommonmark==0.5.0
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Collecting alabaster!=0.7.5,<0.8,>=0.7
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Collecting pyparsing>=2.0.2
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Collecting sphinxcontrib-serializinghtml
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Collecting setuptools==41.0.1
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Building wheels for collected packages: mock, future
  Building wheel for mock (setup.py): started
  Building wheel for mock (setup.py): finished with status 'done'
  Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23755 sha256=877499ecab056b70cd40dba84b334612ad3ab7bbac68fde307f196afc58170f1
  Stored in directory: /tmp/pip-ephem-wheel-cache-w14z5ask/wheels/7a/94/b1/0fdc5339a5bd487a5cc15421ec200d9ba3e2aa7190e4a727f1
  Building wheel for future (setup.py): started
  Building wheel for future (setup.py): finished with status 'done'
  Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491059 sha256=28ade5887d758cdc28cf9e3d941953b464905f09815b39bb617be5d439a51492
  Stored in directory: /tmp/pip-ephem-wheel-cache-w14z5ask/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0
Successfully built mock future
Installing collected packages: urllib3, sphinxcontrib-serializinghtml, pytz, pyparsing, MarkupSafe, idna, chardet, certifi, sphinxcontrib-websupport, snowballstemmer, six, setuptools, requests, Pygments, packaging, Jinja2, imagesize, future, docutils, babel, alabaster, sphinx, commonmark, sphinx-rtd-theme, recommonmark, readthedocs-sphinx-ext, pillow, mock
  Attempting uninstall: setuptools
    Found existing installation: setuptools 51.0.0
    Uninstalling setuptools-51.0.0:
      Successfully uninstalled setuptools-51.0.0
Successfully installed Jinja2-2.11.2 MarkupSafe-1.1.1 Pygments-2.7.3 alabaster-0.7.12 babel-2.9.0 certifi-2020.12.5 chardet-3.0.4 commonmark-0.8.1 docutils-0.14 future-0.18.2 idna-2.10 imagesize-1.2.0 mock-1.0.1 packaging-20.8 pillow-5.4.1 pyparsing-2.4.7 pytz-2020.4 readthedocs-sphinx-ext-2.1.1 recommonmark-0.5.0 requests-2.25.0 setuptools-41.0.1 six-1.15.0 snowballstemmer-2.0.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-serializinghtml-1.1.4 sphinxcontrib-websupport-1.2.4 urllib3-1.26.2

[rtd-command-info] start-time: 2020-12-16T17:33:55.169974Z, end-time: 2020-12-16T17:34:10.542592Z, duration: 15, exit-code: 0
python -m pip install --exists-action=w --no-cache-dir -r requirements_dev.txt
Ignoring numpy: markers 'python_version < "3.6"' don't match your environment
Requirement already satisfied: wheel in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages (from -r requirements_dev.txt (line 5)) (0.36.2)
Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages (from -r requirements.txt (line 3)) (41.0.1)
Collecting cmake>=3.13
  Downloading cmake-3.18.4.post1-py3-none-manylinux1_x86_64.whl (17.7 MB)
Collecting numpy>=1.16.*
  Downloading numpy-1.20.0rc1-cp37-cp37m-manylinux2010_x86_64.whl (15.3 MB)
Collecting cython
  Downloading Cython-0.29.21-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB)
Collecting dask
  Downloading dask-2020.12.0-py3-none-any.whl (884 kB)
Collecting pandas
  Downloading pandas-1.1.5-cp37-cp37m-manylinux1_x86_64.whl (9.5 MB)
Requirement already satisfied: pytz>=2017.2 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages (from pandas->-r requirements_dev.txt (line 9)) (2020.4)
Collecting python-dateutil>=2.7.3
  Downloading python_dateutil-2.8.1-py2.py3-none-any.whl (227 kB)
Requirement already satisfied: six>=1.5 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages (from python-dateutil>=2.7.3->pandas->-r requirements_dev.txt (line 9)) (1.15.0)
Collecting psutil
  Downloading psutil-5.7.3.tar.gz (465 kB)
Collecting pyarrow
  Downloading pyarrow-2.0.0-cp37-cp37m-manylinux2014_x86_64.whl (17.7 MB)
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Collecting tox
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Requirement already satisfied: packaging>=14 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages (from tox->-r requirements_dev.txt (line 7)) (20.8)
Collecting filelock>=3.0.0
  Downloading filelock-3.0.12-py3-none-any.whl (7.6 kB)
Collecting importlib-metadata<3,>=0.12
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Requirement already satisfied: pyparsing>=2.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages (from packaging>=14->tox->-r requirements_dev.txt (line 7)) (2.4.7)
Collecting pluggy>=0.12.0
  Downloading pluggy-0.13.1-py2.py3-none-any.whl (18 kB)
Collecting py>=1.4.17
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Collecting toml>=0.9.4
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Collecting virtualenv!=20.0.0,!=20.0.1,!=20.0.2,!=20.0.3,!=20.0.4,!=20.0.5,!=20.0.6,!=20.0.7,>=16.0.0
  Downloading virtualenv-20.2.2-py2.py3-none-any.whl (5.7 MB)
Collecting appdirs<2,>=1.4.3
  Downloading appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
Collecting distlib<1,>=0.3.1
  Downloading distlib-0.3.1-py2.py3-none-any.whl (335 kB)
Collecting zipp>=0.5
  Downloading zipp-3.4.0-py3-none-any.whl (5.2 kB)
Collecting pyyaml
  Downloading PyYAML-5.3.1.tar.gz (269 kB)
Building wheels for collected packages: psutil, pyyaml
  Building wheel for psutil (setup.py): started
  Building wheel for psutil (setup.py): finished with status 'done'
  Created wheel for psutil: filename=psutil-5.7.3-cp37-cp37m-linux_x86_64.whl size=285389 sha256=a1a913d375fa3dcae6ef65927105b7b897ffe2972fea7887e6764262bcf835a5
  Stored in directory: /tmp/pip-ephem-wheel-cache-z7haxf5y/wheels/f0/4b/57/d037639271e326da3e80e0ddc37bd3d5da7bbf48b3173be557
  Building wheel for pyyaml (setup.py): started
  Building wheel for pyyaml (setup.py): finished with status 'done'
  Created wheel for pyyaml: filename=PyYAML-5.3.1-cp37-cp37m-linux_x86_64.whl size=44620 sha256=434550f5fe9f0b0a44810efc639e545da96654d67b6b88ba38d49efab86dba49
  Stored in directory: /tmp/pip-ephem-wheel-cache-z7haxf5y/wheels/5e/03/1e/e1e954795d6f35dfc7b637fe2277bff021303bd9570ecea653
Successfully built psutil pyyaml
Installing collected packages: zipp, importlib-metadata, filelock, distlib, appdirs, virtualenv, toml, pyyaml, python-dateutil, py, pluggy, numpy, tox, setuptools-scm, pybind11, pyarrow, psutil, pandas, dask, cython, cmake
Successfully installed appdirs-1.4.4 cmake-3.18.4.post1 cython-0.29.21 dask-2020.12.0 distlib-0.3.1 filelock-3.0.12 importlib-metadata-2.1.1 numpy-1.20.0rc1 pandas-1.1.5 pluggy-0.13.1 psutil-5.7.3 py-1.10.0 pyarrow-2.0.0 pybind11-2.6.1 python-dateutil-2.8.1 pyyaml-5.3.1 setuptools-scm-5.0.1 toml-0.10.2 tox-3.20.1 virtualenv-20.2.2 zipp-3.4.0

[rtd-command-info] start-time: 2020-12-16T17:34:10.853318Z, end-time: 2020-12-16T17:42:08.829438Z, duration: 477, exit-code: 0
python ./setup.py install --force
setup.py sys.argv is:  ['./setup.py', 'install', '--force']
TILEDB_PATH from env: ''
libtiledb_exists checking 'library_dirs': []
libtiledb_exists found: 'None'
running install
running bdist_egg
GNU Make 4.1
Built for x86_64-pc-linux-gnu
Copyright (C) 1988-2014 Free Software Foundation, Inc.
License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>
This is free software: you are free to change and redistribute it.
There is NO WARRANTY, to the extent permitted by law.
-- The C compiler identification is GNU 7.5.0
-- The CXX compiler identification is GNU 7.5.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Starting TileDB superbuild.
-- Found Bzip2: /usr/lib/x86_64-linux-gnu/libbz2.so  
-- Could NOT find LZ4 (missing: LZ4_LIBRARIES LZ4_INCLUDE_DIR) 
-- Adding LZ4 as an external project
-- Could NOT find Spdlog (missing: SPDLOG_INCLUDE_DIR) 
-- Adding Spdlog as an external project
-- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.11") 
-- Found Zlib, adding imported target: /usr/lib/x86_64-linux-gnu/libz.so
-- Could NOT find Zstd (missing: ZSTD_LIBRARIES ZSTD_INCLUDE_DIR) 
-- Adding Zstd as an external project
-- Found OpenSSL: /usr/lib/x86_64-linux-gnu/libcrypto.so (found version "1.0.2n")  
-- Found OpenSSL: /usr/lib/x86_64-linux-gnu/libssl.so -- OpenSSL crypto: /usr/lib/x86_64-linux-gnu/libcrypto.so -- root: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/build/externals/install;/usr/local/opt/openssl
-- Could NOT find CURL (missing: CURL_LIBRARY CURL_INCLUDE_DIR) 
-- Could NOT find Curl (missing: CURL_LIBRARIES CURL_INCLUDE_DIR) 
-- Adding Curl as an external project
CMake Warning at cmake/Modules/FindCurl_EP.cmake:112 (message):
  TileDB FindOpenSSL_EP did not set TILEDB_OPENSSL_DIR.  Falling back to
  autotools detection.
Call Stack (most recent call first):
  cmake/TileDB-Superbuild.cmake:97 (include)
  CMakeLists.txt:167 (include)


CMake Warning at cmake/Modules/FindCurl_EP.cmake:124 (message):
  TileDB FindZlib_EP did not set TILEDB_ZLIB_DIR.  Falling back to autotools
  detection.
Call Stack (most recent call first):
  cmake/TileDB-Superbuild.cmake:97 (include)
  CMakeLists.txt:167 (include)


-- Could NOT find AWSSDK (missing: AWSSDK_DIR)
-- Could NOT find AWSSDK
-- Adding AWSSDK as an external project
-- Not found clang-tidy
-- Not found clang-format
-- Found Doxygen: /usr/bin/doxygen (found version "1.8.13") found components: doxygen dot 
-- Install prefix is /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/dist
-- Configuring done
-- Generating done
-- Build files have been written to: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/build
Scanning dependencies of target ep_lz4
Scanning dependencies of target ep_spdlog
[  4%] Creating directories for 'ep_spdlog'
[  4%] Creating directories for 'ep_lz4'
[  6%] Performing download step (download, verify and extract) for 'ep_lz4'
[  8%] Performing download step (download, verify and extract) for 'ep_spdlog'
-- ep_spdlog download command succeeded.  See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/build/externals/src/ep_spdlog-stamp/ep_spdlog-download-*.log
[ 10%] No update step for 'ep_spdlog'
[ 12%] No patch step for 'ep_spdlog'
[ 14%] No configure step for 'ep_spdlog'
[ 16%] No build step for 'ep_spdlog'
[ 18%] No install step for 'ep_spdlog'
[ 20%] Completed 'ep_spdlog'
[ 20%] Built target ep_spdlog
Scanning dependencies of target ep_zstd
[ 22%] Creating directories for 'ep_zstd'
[ 25%] Performing download step (download, verify and extract) for 'ep_zstd'
-- ep_lz4 download command succeeded.  See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/build/externals/src/ep_lz4-stamp/ep_lz4-download-*.log
[ 27%] No update step for 'ep_lz4'
[ 29%] No patch step for 'ep_lz4'
[ 31%] Performing configure step for 'ep_lz4'
-- ep_zstd download command succeeded.  See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/build/externals/src/ep_zstd-stamp/ep_zstd-download-*.log
[ 33%] No update step for 'ep_zstd'
[ 35%] No patch step for 'ep_zstd'
[ 37%] Performing configure step for 'ep_zstd'
-- ep_lz4 configure command succeeded.  See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/build/externals/src/ep_lz4-stamp/ep_lz4-configure-*.log
[ 39%] Performing build step for 'ep_lz4'
-- ep_zstd configure command succeeded.  See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/build/externals/src/ep_zstd-stamp/ep_zstd-configure-*.log
[ 41%] Performing build step for 'ep_zstd'
-- ep_lz4 build command succeeded.  See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/build/externals/src/ep_lz4-stamp/ep_lz4-build-*.log
[ 43%] Performing install step for 'ep_lz4'
-- ep_lz4 install command succeeded.  See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/build/externals/src/ep_lz4-stamp/ep_lz4-install-*.log
[ 45%] Completed 'ep_lz4'
[ 45%] Built target ep_lz4
Scanning dependencies of target ep_curl
[ 47%] Creating directories for 'ep_curl'
[ 50%] Performing download step (download, verify and extract) for 'ep_curl'
-- ep_curl download command succeeded.  See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/build/externals/src/ep_curl-stamp/ep_curl-download-*.log
[ 52%] No update step for 'ep_curl'
[ 54%] No patch step for 'ep_curl'
[ 56%] Performing configure step for 'ep_curl'
-- ep_zstd build command succeeded.  See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/build/externals/src/ep_zstd-stamp/ep_zstd-build-*.log
[ 58%] Performing install step for 'ep_zstd'
-- ep_zstd install command succeeded.  See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/build/externals/src/ep_zstd-stamp/ep_zstd-install-*.log
[ 60%] Completed 'ep_zstd'
[ 60%] Built target ep_zstd
-- ep_curl configure command succeeded.  See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/build/externals/src/ep_curl-stamp/ep_curl-configure-*.log
[ 62%] Performing build step for 'ep_curl'
-- ep_curl build command succeeded.  See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/build/externals/src/ep_curl-stamp/ep_curl-build-*.log
[ 64%] Performing install step for 'ep_curl'
-- ep_curl install command succeeded.  See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/build/externals/src/ep_curl-stamp/ep_curl-install-*.log
[ 66%] Completed 'ep_curl'
[ 66%] Built target ep_curl
Scanning dependencies of target ep_awssdk
[ 68%] Creating directories for 'ep_awssdk'
[ 70%] Performing download step (download, verify and extract) for 'ep_awssdk'
-- ep_awssdk download command succeeded.  See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/build/externals/src/ep_awssdk-stamp/ep_awssdk-download-*.log
[ 72%] No update step for 'ep_awssdk'
[ 75%] No patch step for 'ep_awssdk'
[ 77%] Performing configure step for 'ep_awssdk'
-- ep_awssdk configure command succeeded.  See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/build/externals/src/ep_awssdk-stamp/ep_awssdk-configure-*.log
[ 79%] Performing build step for 'ep_awssdk'
-- ep_awssdk build command succeeded.  See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/build/externals/src/ep_awssdk-stamp/ep_awssdk-build-*.log
[ 81%] Performing install step for 'ep_awssdk'
-- ep_awssdk install command succeeded.  See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/build/externals/src/ep_awssdk-stamp/ep_awssdk-install-*.log
[ 83%] Completed 'ep_awssdk'
[ 83%] Built target ep_awssdk
Scanning dependencies of target tiledb
[ 85%] Creating directories for 'tiledb'
[ 87%] No download step for 'tiledb'
[ 89%] No update step for 'tiledb'
[ 91%] No patch step for 'tiledb'
[ 93%] Performing configure step for 'tiledb'
-- The C compiler identification is GNU 7.5.0
-- The CXX compiler identification is GNU 7.5.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Starting TileDB regular build.
-- The TileDB library is compiled with stats enabled.
-- Found OpenSSL: /usr/lib/x86_64-linux-gnu/libcrypto.so (found version "1.0.2n")  
-- Found OpenSSL: /usr/lib/x86_64-linux-gnu/libssl.so -- OpenSSL crypto: /usr/lib/x86_64-linux-gnu/libcrypto.so -- root: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/build/externals/install;/usr/local/opt/openssl
-- The TileDB library is compiled with S3 support.
-- Found AWS SDK for C++, Version: 1.8.84, Install Root:/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/build/externals/install, Platform Prefix:, Platform Dependent Libraries: pthread;crypto;ssl;z;curl
-- Found AWS lib: aws-cpp-sdk-s3 (/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/build/externals/install/lib/libaws-cpp-sdk-s3.a)
-- Found AWS lib: aws-cpp-sdk-core (/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/build/externals/install/lib/libaws-cpp-sdk-core.a)
-- Found AWS lib: aws-c-event-stream (/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/build/externals/install/lib/libaws-c-event-stream.a)
-- Found AWS lib: aws-checksums (/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/build/externals/install/lib/libaws-checksums.a)
-- Found AWS lib: aws-c-common (/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/build/externals/install/lib/libaws-c-common.a)
-- Found AWS lib: aws-c-common (/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/build/externals/install/lib/libaws-c-common.a)
-- Found AWS lib: aws-c-event-stream (/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/build/externals/install/lib/libaws-c-event-stream.a)
-- Found AWS lib: aws-checksums (/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/build/externals/install/lib/libaws-checksums.a)
-- Found AWS lib: aws-cpp-sdk-sts (/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/build/externals/install/lib/libaws-cpp-sdk-sts.a)
-- Found AWS lib: aws-cpp-sdk-identity-management (/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/build/externals/install/lib/libaws-cpp-sdk-identity-management.a)
-- Found CURL: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/build/externals/install/lib/libcurl.a (found version "7.71.1")  
-- Found CURL: '/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/build/externals/install/lib/libcurl.a' (found version "")
-- The TileDB library is compiled with HDFS support.
CMake Warning (dev) at /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages/cmake/data/share/cmake-3.18/Modules/FindPackageHandleStandardArgs.cmake:273 (message):
  The package name passed to `find_package_handle_standard_args` (Bzip2) does
  not match the name of the calling package (Bzip2_EP).  This can lead to
  problems in calling code that expects `find_package` result variables
  (e.g., `_FOUND`) to follow a certain pattern.
Call Stack (most recent call first):
  cmake/Modules/FindBzip2_EP.cmake:72 (FIND_PACKAGE_HANDLE_STANDARD_ARGS)
  tiledb/CMakeLists.txt:412 (find_package)
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Found Bzip2: /usr/lib/x86_64-linux-gnu/libbz2.so  
CMake Warning (dev) at /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages/cmake/data/share/cmake-3.18/Modules/FindPackageHandleStandardArgs.cmake:273 (message):
  The package name passed to `find_package_handle_standard_args` (LZ4) does
  not match the name of the calling package (LZ4_EP).  This can lead to
  problems in calling code that expects `find_package` result variables
  (e.g., `_FOUND`) to follow a certain pattern.
Call Stack (most recent call first):
  cmake/Modules/FindLZ4_EP.cmake:73 (FIND_PACKAGE_HANDLE_STANDARD_ARGS)
  tiledb/CMakeLists.txt:413 (find_package)
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Found LZ4: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/build/externals/install/lib/liblz4.a  
CMake Warning (dev) at /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages/cmake/data/share/cmake-3.18/Modules/FindPackageHandleStandardArgs.cmake:273 (message):
  The package name passed to `find_package_handle_standard_args` (Spdlog)
  does not match the name of the calling package (Spdlog_EP).  This can lead
  to problems in calling code that expects `find_package` result variables
  (e.g., `_FOUND`) to follow a certain pattern.
Call Stack (most recent call first):
  cmake/Modules/FindSpdlog_EP.cmake:45 (FIND_PACKAGE_HANDLE_STANDARD_ARGS)
  tiledb/CMakeLists.txt:414 (find_package)
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Found Spdlog: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/build/externals/src/ep_spdlog/include  
-- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.11") 
-- Found Zlib, adding imported target: /usr/lib/x86_64-linux-gnu/libz.so
CMake Warning (dev) at /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages/cmake/data/share/cmake-3.18/Modules/FindPackageHandleStandardArgs.cmake:273 (message):
  The package name passed to `find_package_handle_standard_args` (Zstd) does
  not match the name of the calling package (Zstd_EP).  This can lead to
  problems in calling code that expects `find_package` result variables
  (e.g., `_FOUND`) to follow a certain pattern.
Call Stack (most recent call first):
  cmake/Modules/FindZstd_EP.cmake:73 (FIND_PACKAGE_HANDLE_STANDARD_ARGS)
  tiledb/CMakeLists.txt:416 (find_package)
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Found Zstd: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/build/externals/install/lib/libzstd.a  
-- Found curl-config: '/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/build/externals/install/bin/curl-config'
-- Computed initial transitive Curl library links to TileDB targets: '/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/build/externals/install/lib/libcurl.a;-lssl;-lcrypto;-lssl;-lcrypto;-lz'
-- Adding final transitive Curl library links to TileDB targets: '/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/build/externals/install/lib/libcurl.a'
-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY
-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success
-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY
-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success
-- Performing Test COMPILER_HAS_DEPRECATED_ATTR
-- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success
-- Configuring done
-- Generating done
CMake Warning:
  Manually-specified variables were not used by the project:

    TILEDB_LZ4_EP_BUILT


-- Build files have been written to: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/build/tiledb
[ 95%] Performing build step for 'tiledb'
Scanning dependencies of target TILEDB_CORE_OBJECTS
[  0%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/common/logger.cc.o
[  0%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/common/status.cc.o
[  2%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/common/thread_pool.cc.o
[  2%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/array/array.cc.o
[  4%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/array_schema/array_schema.cc.o
[  4%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/array_schema/attribute.cc.o
[  6%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/array_schema/dimension.cc.o
[  6%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/array_schema/domain.cc.o
[  8%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/buffer/buffer.cc.o
[  8%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/buffer/buffer_list.cc.o
[ 11%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/buffer/const_buffer.cc.o
[ 11%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/buffer/preallocated_buffer.cc.o
[ 13%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/c_api/tiledb.cc.o
[ 13%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/cache/buffer_lru_cache.cc.o
[ 15%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/compressors/bzip_compressor.cc.o
[ 15%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/compressors/dd_compressor.cc.o
[ 17%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/compressors/gzip_compressor.cc.o
[ 17%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/compressors/lz4_compressor.cc.o
[ 20%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/compressors/rle_compressor.cc.o
[ 20%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/compressors/zstd_compressor.cc.o
[ 20%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/config/config.cc.o
[ 22%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/config/config_iter.cc.o
[ 22%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/crypto/crypto.cc.o
[ 24%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/crypto/encryption_key.cc.o
[ 24%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/crypto/encryption_key_validation.cc.o
[ 26%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/crypto/crypto_openssl.cc.o
[ 26%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/crypto/crypto_win32.cc.o
[ 28%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filesystem/azure.cc.o
[ 28%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filesystem/gcs.cc.o
[ 31%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filesystem/mem_filesystem.cc.o
[ 31%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filesystem/hdfs_filesystem.cc.o
[ 33%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filesystem/posix.cc.o
[ 33%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filesystem/s3.cc.o
[ 35%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filesystem/s3_thread_pool_executor.cc.o
[ 35%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filesystem/vfs.cc.o
[ 37%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filesystem/vfs_file_handle.cc.o
[ 37%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filesystem/win.cc.o
[ 40%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filter/bit_width_reduction_filter.cc.o
[ 40%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filter/bitshuffle_filter.cc.o
[ 40%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filter/byteshuffle_filter.cc.o
[ 42%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filter/checksum_md5_filter.cc.o
[ 42%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filter/checksum_sha256_filter.cc.o
[ 44%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filter/compression_filter.cc.o
[ 44%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filter/encryption_aes256gcm_filter.cc.o
[ 46%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filter/filter.cc.o
[ 46%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filter/filter_buffer.cc.o
[ 48%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filter/filter_pipeline.cc.o
[ 48%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filter/filter_storage.cc.o
[ 51%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filter/noop_filter.cc.o
[ 51%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filter/positive_delta_filter.cc.o
[ 53%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/fragment/fragment_info.cc.o
[ 53%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/fragment/fragment_metadata.cc.o
[ 55%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/global_state/global_state.cc.o
[ 55%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/global_state/libcurl_state.cc.o
[ 57%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/global_state/openssl_state.cc.o
[ 57%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/global_state/signal_handlers.cc.o
[ 60%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/global_state/tbb_state.cc.o
[ 60%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/global_state/watchdog.cc.o
[ 60%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/metadata/metadata.cc.o
[ 62%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/misc/cancelable_tasks.cc.o
[ 62%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/misc/constants.cc.o
[ 64%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/misc/uri.cc.o
[ 64%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/misc/utils.cc.o
[ 66%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/misc/uuid.cc.o
[ 66%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/misc/win_constants.cc.o
[ 68%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/misc/work_arounds.cc.o
[ 68%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/query/query.cc.o
[ 71%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/query/reader.cc.o
[ 71%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/query/result_tile.cc.o
[ 73%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/query/read_cell_slab_iter.cc.o
[ 73%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/query/writer.cc.o
[ 75%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/query/write_cell_slab_iter.cc.o
[ 75%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/rest/rest_client.cc.o
[ 77%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/rtree/rtree.cc.o
[ 77%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/serialization/array_schema.cc.o
[ 80%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/serialization/query.cc.o
[ 80%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/stats/stats.cc.o
[ 80%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/storage_manager/context.cc.o
[ 82%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/storage_manager/consolidator.cc.o
[ 82%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/storage_manager/open_array.cc.o
[ 84%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/storage_manager/storage_manager.cc.o
[ 84%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/subarray/cell_slab_iter.cc.o
[ 86%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/subarray/subarray.cc.o
[ 86%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/subarray/subarray_partitioner.cc.o
[ 88%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/tile/chunked_buffer.cc.o
[ 88%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/tile/tile.cc.o
[ 91%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/tile/generic_tile_io.cc.o
[ 91%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/__/external/src/md5/md5.cc.o
[ 93%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/__/external/src/bitshuffle/iochain.cc.o
[ 93%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/__/external/src/bitshuffle/bitshuffle_core.cc.o
[ 95%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/__/external/src/blosc/shuffle.cc.o
[ 95%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/__/external/src/blosc/shuffle-avx2.cc.o
[ 97%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/__/external/src/blosc/shuffle-generic.cc.o
[ 97%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/__/external/src/blosc/shuffle-sse2.cc.o
[ 97%] Built target TILEDB_CORE_OBJECTS
Scanning dependencies of target tiledb_shared
[100%] Linking CXX shared library libtiledb.so
[100%] Built target tiledb_shared
[ 97%] No install step for 'tiledb'
[100%] Completed 'tiledb'
[100%] Built target tiledb
Scanning dependencies of target install-tiledb
[ 97%] Built target TILEDB_CORE_OBJECTS
[100%] Built target tiledb_shared
Install the project...
-- Install configuration: "Release"
-- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/dist/lib/libtiledb.so.2.2
-- Set runtime path of "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/dist/lib/libtiledb.so.2.2" to "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/dist/lib"
-- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/dist/lib/libtiledb.so
-- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/dist/include/tiledb/tiledb.h
-- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/dist/include/tiledb/tiledb_enum.h
-- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/dist/include/tiledb/tiledb_version.h
-- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/dist/include/tiledb/tiledb
-- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/dist/include/tiledb/array.h
-- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/dist/include/tiledb/array_schema.h
-- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/dist/include/tiledb/attribute.h
-- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/dist/include/tiledb/config.h
-- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/dist/include/tiledb/context.h
-- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/dist/include/tiledb/core_interface.h
-- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/dist/include/tiledb/deleter.h
-- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/dist/include/tiledb/dimension.h
-- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/dist/include/tiledb/domain.h
-- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/dist/include/tiledb/exception.h
-- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/dist/include/tiledb/filter.h
-- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/dist/include/tiledb/filter_list.h
-- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/dist/include/tiledb/fragment_info.h
-- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/dist/include/tiledb/group.h
-- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/dist/include/tiledb/object.h
-- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/dist/include/tiledb/object_iter.h
-- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/dist/include/tiledb/query.h
-- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/dist/include/tiledb/schema_base.h
-- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/dist/include/tiledb/stats.h
-- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/dist/include/tiledb/type.h
-- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/dist/include/tiledb/utils.h
-- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/dist/include/tiledb/version.h
-- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/dist/include/tiledb/vfs.h
-- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/dist/include/tiledb/arrowio
-- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/dist/include/tiledb/arrow_io_impl.h
-- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/dist/include/tiledb/tiledb_export.h
-- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/dist/lib/cmake/TileDB/TileDBConfig.cmake
-- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/dist/lib/cmake/TileDB/TileDBTargets.cmake
-- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/dist/lib/cmake/TileDB/TileDBTargets-release.cmake
-- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/dist/lib/pkgconfig/tiledb.pc
Built target install-tiledb
ext_modules:  [<setuptools.extension.Extension('tiledb.libtiledb') at 0x7fa9a3648c50>, <setuptools.extension.Extension('tiledb.core') at 0x7fa9a16e0d90>, <setuptools.extension.Extension('tiledb.fragment') at 0x7fa9a167f090>]
tiledb_ext:  <setuptools.extension.Extension('tiledb.libtiledb') at 0x7fa9a3648c50>
core_ext:  <setuptools.extension.Extension('tiledb.core') at 0x7fa9a16e0d90>
fragment_ext:  <setuptools.extension.Extension('tiledb.fragment') at 0x7fa9a167f090>
tiledb_ext.library_dirs:  []
libtiledb_exists checking 'library_dirs': []
libtiledb_exists found: 'None'
Downloading TileDB package from dev...
Building libtiledb in directory /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/build...
CMake configure command: ['cmake', '-DCMAKE_INSTALL_PREFIX=/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/dist', '-DTILEDB_TESTS=OFF', '-DTILEDB_S3=ON', '-DTILEDB_HDFS=ON', '-DTILEDB_INSTALL_LIBDIR=lib', '-DTILEDB_CPP_API=ON', '-DTILEDB_LOG_OUTPUT_ON_FAILURE=ON', '-DTILEDB_FORCE_ALL_DEPS:BOOL=OFF', '-DTILEDB_SERIALIZATION:BOOL=OFF', '-DCMAKE_BUILD_TYPE=Release', '/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev']
prefix_dir:  <setuptools.extension.Extension('tiledb.core') at 0x7fa9a16e0d90>
do_install:  True
Copying file /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/dist/lib/libtiledb.so to /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/tiledb/native/libtiledb.so

-------------------
libtiledb_objects:  ['native/libtiledb.so*']
-------------------

running egg_info
creating tiledb.egg-info
writing tiledb.egg-info/PKG-INFO
writing dependency_links to tiledb.egg-info/dependency_links.txt
writing requirements to tiledb.egg-info/requires.txt
writing top-level names to tiledb.egg-info/top_level.txt
writing manifest file 'tiledb.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages/setuptools_scm/git.py:68: UserWarning: "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest" is shallow and may cause errors
  warnings.warn('"{}" is shallow and may cause errors'.format(wd.path))
warning: no previously-included files found matching '.travis.yml'
writing manifest file 'tiledb.egg-info/SOURCES.txt'
installing library code to build/bdist.linux-x86_64/egg
running install_lib
running build_py
creating build/lib.linux-x86_64-3.7
creating build/lib.linux-x86_64-3.7/tiledb
copying tiledb/dataframe_.py -> build/lib.linux-x86_64-3.7/tiledb
copying tiledb/highlevel.py -> build/lib.linux-x86_64-3.7/tiledb
copying tiledb/__init__.py -> build/lib.linux-x86_64-3.7/tiledb
copying tiledb/version.py -> build/lib.linux-x86_64-3.7/tiledb
copying tiledb/array.py -> build/lib.linux-x86_64-3.7/tiledb
copying tiledb/metadata.py -> build/lib.linux-x86_64-3.7/tiledb
copying tiledb/multirange_indexing.py -> build/lib.linux-x86_64-3.7/tiledb
creating build/lib.linux-x86_64-3.7/tiledb/tests
copying tiledb/tests/test_metadata.py -> build/lib.linux-x86_64-3.7/tiledb/tests
copying tiledb/tests/test_pandas_dataframe.py -> build/lib.linux-x86_64-3.7/tiledb/tests
copying tiledb/tests/test_dask.py -> build/lib.linux-x86_64-3.7/tiledb/tests
copying tiledb/tests/test_domain_index.py -> build/lib.linux-x86_64-3.7/tiledb/tests
copying tiledb/tests/test_core.py -> build/lib.linux-x86_64-3.7/tiledb/tests
copying tiledb/tests/__init__.py -> build/lib.linux-x86_64-3.7/tiledb/tests
copying tiledb/tests/all.py -> build/lib.linux-x86_64-3.7/tiledb/tests
copying tiledb/tests/test_multi_index.py -> build/lib.linux-x86_64-3.7/tiledb/tests
copying tiledb/tests/test_libtiledb.py -> build/lib.linux-x86_64-3.7/tiledb/tests
copying tiledb/tests/test_fragment_info.py -> build/lib.linux-x86_64-3.7/tiledb/tests
copying tiledb/tests/test_util.py -> build/lib.linux-x86_64-3.7/tiledb/tests
copying tiledb/tests/check_csv_dir.py -> build/lib.linux-x86_64-3.7/tiledb/tests
copying tiledb/tests/test_examples.py -> build/lib.linux-x86_64-3.7/tiledb/tests
copying tiledb/tests/test_compat.py -> build/lib.linux-x86_64-3.7/tiledb/tests
copying tiledb/tests/common.py -> build/lib.linux-x86_64-3.7/tiledb/tests
creating build/lib.linux-x86_64-3.7/tiledb/native
copying tiledb/native/libtiledb.so -> build/lib.linux-x86_64-3.7/tiledb/native
running build_ext
ext_modules:  [<setuptools.extension.Extension('tiledb.libtiledb') at 0x7fa9a3648c50>, <setuptools.extension.Extension('tiledb.core') at 0x7fa9a16e0d90>, <setuptools.extension.Extension('tiledb.fragment') at 0x7fa9a167f090>]
tiledb_ext:  <setuptools.extension.Extension('tiledb.libtiledb') at 0x7fa9a3648c50>
core_ext:  <setuptools.extension.Extension('tiledb.core') at 0x7fa9a16e0d90>
fragment_ext:  <setuptools.extension.Extension('tiledb.fragment') at 0x7fa9a167f090>
tiledb_ext.library_dirs:  ['/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/dist/lib']
libtiledb_exists checking 'library_dirs': ['/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/dist/lib']
libtiledb_exists found: '/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/dist/lib/libtiledb.so'
prefix_dir:  <setuptools.extension.Extension('tiledb.core') at 0x7fa9a16e0d90>
do_install:  False
cythoning tiledb/libtiledb.pyx to tiledb/libtiledb.cpp
building 'tiledb.libtiledb' extension
creating build/temp.linux-x86_64-3.7
creating build/temp.linux-x86_64-3.7/tiledb
gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/dist/include -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages/numpy/core/include -I/home/docs/.pyenv/versions/3.7.9/include/python3.7m -c tiledb/libtiledb.cpp -o build/temp.linux-x86_64-3.7/tiledb/libtiledb.o -std=c++11 -Wno-deprecated-declarations
In file included from /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1944:0,
                 from /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
                 from /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
                 from tiledb/libtiledb.cpp:633:
/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
 #warning "Using deprecated NumPy API, disable it with " \
  ^~~~~~~
tiledb/libtiledb.pyx: In function ‘PyObject* __pyx_pf_6tiledb_9libtiledb_4Attr_4fill___get__(__pyx_obj_6tiledb_9libtiledb_Attr*)’:
tiledb/libtiledb.pyx:2408:12: warning: variable ‘__pyx_v_shape’ set but not used [-Wunused-but-set-variable]
         """Fill value for unset cells of this attribute
            ^~~~~~~~~~~~~
tiledb/libtiledb.pyx: In function ‘PyObject* __pyx_pf_6tiledb_9libtiledb_5Array_30_nonempty_domain_var(__pyx_obj_6tiledb_9libtiledb_Array*)’:
tiledb/libtiledb.pyx:4188:18: warning: ‘__pyx_v_end_buf_ptr’ may be used uninitialized in this function [-Wmaybe-uninitialized]
                     rc = tiledb_array_get_non_empty_domain_var_from_index(
                  ^  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~                                                                                                               
tiledb/libtiledb.pyx:4146:9: note: ‘__pyx_v_end_buf_ptr’ was declared here
         """Return nonempty domain for a var-length attribute (internal)."""
         ^~~~~~~~~~~~~~~~~~~
g++ -pthread -shared -L/home/docs/.pyenv/versions/3.7.9/lib -L/home/docs/.pyenv/versions/3.7.9/lib build/temp.linux-x86_64-3.7/tiledb/libtiledb.o -L/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/dist/lib -ltiledb -o build/lib.linux-x86_64-3.7/tiledb/libtiledb.cpython-37m-x86_64-linux-gnu.so
building 'tiledb.core' extension
gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages/pybind11/include -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages/pybind11/include -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/dist/include -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages/numpy/core/include -I/home/docs/.pyenv/versions/3.7.9/include/python3.7m -c tiledb/core.cc -o build/temp.linux-x86_64-3.7/tiledb/core.o -std=c++11 -Wno-deprecated-declarations
tiledb/core.cc:76:8: warning: ‘tiledbpy::BufferInfo’ declared with greater visibility than the type of its field ‘tiledbpy::BufferInfo::dtype’ [-Wattributes]
 struct BufferInfo {
        ^~~~~~~~~~
tiledb/core.cc:76:8: warning: ‘tiledbpy::BufferInfo’ declared with greater visibility than the type of its field ‘tiledbpy::BufferInfo::data’ [-Wattributes]
tiledb/core.cc:76:8: warning: ‘tiledbpy::BufferInfo’ declared with greater visibility than the type of its field ‘tiledbpy::BufferInfo::offsets’ [-Wattributes]
In file included from /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:21:0,
                 from /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
                 from tiledb/core.cc:9:
/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1464:1: warning: ‘int _import_array()’ defined but not used [-Wunused-function]
 _import_array(void)
 ^~~~~~~~~~~~~
g++ -pthread -shared -L/home/docs/.pyenv/versions/3.7.9/lib -L/home/docs/.pyenv/versions/3.7.9/lib build/temp.linux-x86_64-3.7/tiledb/core.o -L/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/dist/lib -ltiledb -o build/lib.linux-x86_64-3.7/tiledb/core.cpython-37m-x86_64-linux-gnu.so
building 'tiledb.fragment' extension
gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages/pybind11/include -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages/pybind11/include -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/dist/include -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages/numpy/core/include -I/home/docs/.pyenv/versions/3.7.9/include/python3.7m -c tiledb/fragment.cc -o build/temp.linux-x86_64-3.7/tiledb/fragment.o -std=c++11 -Wno-deprecated-declarations
g++ -pthread -shared -L/home/docs/.pyenv/versions/3.7.9/lib -L/home/docs/.pyenv/versions/3.7.9/lib build/temp.linux-x86_64-3.7/tiledb/fragment.o -L/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/dist/lib -ltiledb -o build/lib.linux-x86_64-3.7/tiledb/fragment.cpython-37m-x86_64-linux-gnu.so
creating build/bdist.linux-x86_64
creating build/bdist.linux-x86_64/egg
creating build/bdist.linux-x86_64/egg/tiledb
creating build/bdist.linux-x86_64/egg/tiledb/tests
copying build/lib.linux-x86_64-3.7/tiledb/tests/test_metadata.py -> build/bdist.linux-x86_64/egg/tiledb/tests
copying build/lib.linux-x86_64-3.7/tiledb/tests/test_pandas_dataframe.py -> build/bdist.linux-x86_64/egg/tiledb/tests
copying build/lib.linux-x86_64-3.7/tiledb/tests/test_dask.py -> build/bdist.linux-x86_64/egg/tiledb/tests
copying build/lib.linux-x86_64-3.7/tiledb/tests/test_domain_index.py -> build/bdist.linux-x86_64/egg/tiledb/tests
copying build/lib.linux-x86_64-3.7/tiledb/tests/test_core.py -> build/bdist.linux-x86_64/egg/tiledb/tests
copying build/lib.linux-x86_64-3.7/tiledb/tests/__init__.py -> build/bdist.linux-x86_64/egg/tiledb/tests
copying build/lib.linux-x86_64-3.7/tiledb/tests/all.py -> build/bdist.linux-x86_64/egg/tiledb/tests
copying build/lib.linux-x86_64-3.7/tiledb/tests/test_multi_index.py -> build/bdist.linux-x86_64/egg/tiledb/tests
copying build/lib.linux-x86_64-3.7/tiledb/tests/test_libtiledb.py -> build/bdist.linux-x86_64/egg/tiledb/tests
copying build/lib.linux-x86_64-3.7/tiledb/tests/test_fragment_info.py -> build/bdist.linux-x86_64/egg/tiledb/tests
copying build/lib.linux-x86_64-3.7/tiledb/tests/test_util.py -> build/bdist.linux-x86_64/egg/tiledb/tests
copying build/lib.linux-x86_64-3.7/tiledb/tests/check_csv_dir.py -> build/bdist.linux-x86_64/egg/tiledb/tests
copying build/lib.linux-x86_64-3.7/tiledb/tests/test_examples.py -> build/bdist.linux-x86_64/egg/tiledb/tests
copying build/lib.linux-x86_64-3.7/tiledb/tests/test_compat.py -> build/bdist.linux-x86_64/egg/tiledb/tests
copying build/lib.linux-x86_64-3.7/tiledb/tests/common.py -> build/bdist.linux-x86_64/egg/tiledb/tests
copying build/lib.linux-x86_64-3.7/tiledb/dataframe_.py -> build/bdist.linux-x86_64/egg/tiledb
copying build/lib.linux-x86_64-3.7/tiledb/highlevel.py -> build/bdist.linux-x86_64/egg/tiledb
copying build/lib.linux-x86_64-3.7/tiledb/__init__.py -> build/bdist.linux-x86_64/egg/tiledb
copying build/lib.linux-x86_64-3.7/tiledb/libtiledb.cpython-37m-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/egg/tiledb
copying build/lib.linux-x86_64-3.7/tiledb/fragment.cpython-37m-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/egg/tiledb
copying build/lib.linux-x86_64-3.7/tiledb/version.py -> build/bdist.linux-x86_64/egg/tiledb
copying build/lib.linux-x86_64-3.7/tiledb/array.py -> build/bdist.linux-x86_64/egg/tiledb
copying build/lib.linux-x86_64-3.7/tiledb/core.cpython-37m-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/egg/tiledb
creating build/bdist.linux-x86_64/egg/tiledb/native
copying build/lib.linux-x86_64-3.7/tiledb/native/libtiledb.so -> build/bdist.linux-x86_64/egg/tiledb/native
copying build/lib.linux-x86_64-3.7/tiledb/metadata.py -> build/bdist.linux-x86_64/egg/tiledb
copying build/lib.linux-x86_64-3.7/tiledb/multirange_indexing.py -> build/bdist.linux-x86_64/egg/tiledb
byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/test_metadata.py to test_metadata.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/test_pandas_dataframe.py to test_pandas_dataframe.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/test_dask.py to test_dask.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/test_domain_index.py to test_domain_index.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/test_core.py to test_core.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/__init__.py to __init__.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/all.py to all.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/test_multi_index.py to test_multi_index.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/test_libtiledb.py to test_libtiledb.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/test_fragment_info.py to test_fragment_info.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/test_util.py to test_util.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/check_csv_dir.py to check_csv_dir.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/test_examples.py to test_examples.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/test_compat.py to test_compat.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/common.py to common.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/tiledb/dataframe_.py to dataframe_.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/tiledb/highlevel.py to highlevel.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/tiledb/__init__.py to __init__.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/tiledb/version.py to version.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/tiledb/array.py to array.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/tiledb/metadata.py to metadata.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/tiledb/multirange_indexing.py to multirange_indexing.cpython-37.pyc
creating stub loader for tiledb/libtiledb.cpython-37m-x86_64-linux-gnu.so
creating stub loader for tiledb/core.cpython-37m-x86_64-linux-gnu.so
creating stub loader for tiledb/fragment.cpython-37m-x86_64-linux-gnu.so
byte-compiling build/bdist.linux-x86_64/egg/tiledb/libtiledb.py to libtiledb.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/tiledb/core.py to core.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/tiledb/fragment.py to fragment.cpython-37.pyc
creating build/bdist.linux-x86_64/egg/EGG-INFO
copying tiledb.egg-info/PKG-INFO -> build/bdist.linux-x86_64/egg/EGG-INFO
copying tiledb.egg-info/SOURCES.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
copying tiledb.egg-info/dependency_links.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
copying tiledb.egg-info/not-zip-safe -> build/bdist.linux-x86_64/egg/EGG-INFO
copying tiledb.egg-info/requires.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
copying tiledb.egg-info/top_level.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
writing build/bdist.linux-x86_64/egg/EGG-INFO/native_libs.txt
creating dist
creating 'dist/tiledb-0.7.4.dev37-py3.7-linux-x86_64.egg' and adding 'build/bdist.linux-x86_64/egg' to it
removing 'build/bdist.linux-x86_64/egg' (and everything under it)
Processing tiledb-0.7.4.dev37-py3.7-linux-x86_64.egg
creating /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages/tiledb-0.7.4.dev37-py3.7-linux-x86_64.egg
Extracting tiledb-0.7.4.dev37-py3.7-linux-x86_64.egg to /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages
Adding tiledb 0.7.4.dev37 to easy-install.pth file

Installed /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages/tiledb-0.7.4.dev37-py3.7-linux-x86_64.egg
Processing dependencies for tiledb==0.7.4.dev37
Searching for wheel==0.36.2
Best match: wheel 0.36.2
Adding wheel 0.36.2 to easy-install.pth file
Installing wheel script to /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/bin

Using /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages
Searching for numpy==1.20.0rc1
Best match: numpy 1.20.0rc1
Adding numpy 1.20.0rc1 to easy-install.pth file
Installing f2py script to /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/bin
Installing f2py3 script to /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/bin
Installing f2py3.7 script to /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/bin

Using /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages
Finished processing dependencies for tiledb==0.7.4.dev37
/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/tiledb/libtiledb.pxd
  tree = Parsing.p_module(s, pxd, full_module_name)
warning: tiledb/libtiledb.pyx:5555:0: Overriding cdef method with def method.

[rtd-command-info] start-time: 2020-12-16T17:42:10.157218Z, end-time: 2020-12-16T17:42:10.232437Z, duration: 0, exit-code: 0
cat doc/source/conf.py
#!/usr/bin/env python3
# -*- coding: utf-8 -*-
#

# -- Imports configuration -------------------------------------------------

import os
import sys
from os.path import abspath, join, dirname

sys.path.insert(0, abspath(join(dirname(__file__))))

# -- ReadTheDocs configuration ---------------------------------------------

# Special handling on ReadTheDocs builds.
# Some of this code is from https://github.com/robotpy/robotpy-docs/blob/master/conf.py
readthedocs = os.environ.get('READTHEDOCS', None) == 'True'
rtd_version = os.environ.get('READTHEDOCS_VERSION', 'latest')
rtd_version = rtd_version if rtd_version in ['stable', 'latest'] else 'stable'

# -- Project information -----------------------------------------------------

project = 'TileDB-Py'
copyright = '2020, TileDB, Inc.'
author = 'TileDB, Inc.'

# The short X.Y version
version = '0.6'
# The full version, including alpha/beta/rc tags
release = '0.6.5'


# -- General configuration ---------------------------------------------------

# If your documentation needs a minimal Sphinx version, state it here.
#
# needs_sphinx = '1.0'

# Add any Sphinx extension module names here, as strings. They can be
# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
# ones.
extensions = [
    'sphinx.ext.autodoc',
    'sphinx.ext.doctest',
    'sphinx.ext.intersphinx',
]

# Mapping for linking between RTD subprojects.
if readthedocs:
    intersphinx_mapping = {
        'tiledb': ('https://tiledb-inc-tiledb.readthedocs-hosted.com/en/%s/' % rtd_version, None),
        'tiledb-py': ('https://tiledb-inc-tiledb.readthedocs-hosted.com/projects/python-api/en/%s/' % rtd_version, None),
        'python': ('https://docs.python.org/', None)
    }

# Add any paths that contain templates here, relative to this directory.
templates_path = ['_templates']

# The suffix(es) of source filenames.
# You can specify multiple suffix as a list of string:
#
# source_suffix = ['.rst', '.md']
source_suffix = '.rst'

# The master toctree document.
master_doc = 'index'

# The language for content autogenerated by Sphinx. Refer to documentation
# for a list of supported languages.
#
# This is also used if you do content translation via gettext catalogs.
# Usually you set "language" from the command line for these cases.
language = None

# List of patterns, relative to source directory, that match files and
# directories to ignore when looking for source files.
# This pattern also affects html_static_path and html_extra_path .
exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store']

# The name of the Pygments (syntax highlighting) style to use.
pygments_style = 'friendly'


# -- Options for HTML output -------------------------------------------------

html_static_path = ['_static']
html_logo = '_static/tiledb-logo_color_no_margin_@4x.png'
html_favicon = '_static/favicon.ico'

if readthedocs:
    html_theme = 'default'
else:
    import sphinx_rtd_theme
    html_theme = 'sphinx_rtd_theme'
    html_theme_path = [sphinx_rtd_theme.get_html_theme_path()]

# -- Options for HTMLHelp output ---------------------------------------------

# Output file base name for HTML help builder.
htmlhelp_basename = 'TileDB-Pydoc'


# -- Options for LaTeX output ------------------------------------------------

latex_elements = {
    # The paper size ('letterpaper' or 'a4paper').
    #
    # 'papersize': 'letterpaper',

    # The font size ('10pt', '11pt' or '12pt').
    #
    # 'pointsize': '10pt',

    # Additional stuff for the LaTeX preamble.
    #
    # 'preamble': '',

    # Latex figure (float) alignment
    #
    # 'figure_align': 'htbp',
}

# Grouping the document tree into LaTeX files. List of tuples
# (source start file, target name, title,
#  author, documentclass [howto, manual, or own class]).
latex_documents = [
    (master_doc, 'TileDB-Py.tex', 'TileDB-Py Documentation',
     'TileDB, Inc.', 'manual'),
]


# -- Options for manual page output ------------------------------------------

# One entry per manual page. List of tuples
# (source start file, name, description, authors, manual section).
man_pages = [
    (master_doc, 'tiledb-py', 'TileDB-Py Documentation',
     [author], 1)
]


# -- Options for Texinfo output ----------------------------------------------

# Grouping the document tree into Texinfo files. List of tuples
# (source start file, target name, title, author,
#  dir menu entry, description, category)
texinfo_documents = [
    (master_doc, 'TileDB-Py', 'TileDB-Py Documentation',
     author, 'TileDB-Py', 'One line description of project.',
     'Miscellaneous'),
]

# -- Custom Document processing ----------------------------------------------

# Generate the sidebar automatically so that it is identical across all subprojects.
# This (and gensidebar.py) from https://github.com/robotpy/robotpy-docs
import gensidebar
gensidebar.generate_sidebar({'on_rtd': readthedocs, 'rtd_version': rtd_version}, 'tiledb-py')

# -- Custom setup -----------------------------------------------------------

def setup(app):
    app.add_stylesheet('custom.css')




###########################################################################
#          auto-created readthedocs.org specific configuration            #
###########################################################################


#
# The following code was added during an automated build on readthedocs.org
# It is auto created and injected for every build. The result is based on the
# conf.py.tmpl file found in the readthedocs.org codebase:
# https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl
#


import importlib
import sys
import os.path
from six import string_types

from sphinx import version_info

# Get suffix for proper linking to GitHub
# This is deprecated in Sphinx 1.3+,
# as each page can have its own suffix
if globals().get('source_suffix', False):
    if isinstance(source_suffix, string_types):
        SUFFIX = source_suffix
    elif isinstance(source_suffix, (list, tuple)):
        # Sphinx >= 1.3 supports list/tuple to define multiple suffixes
        SUFFIX = source_suffix[0]
    elif isinstance(source_suffix, dict):
        # Sphinx >= 1.8 supports a mapping dictionary for multiple suffixes
        SUFFIX = list(source_suffix.keys())[0]  # make a ``list()`` for py2/py3 compatibility
    else:
        # default to .rst
        SUFFIX = '.rst'
else:
    SUFFIX = '.rst'

# Add RTD Static Path. Add to the end because it overwrites previous files.
if not 'html_static_path' in globals():
    html_static_path = []
if os.path.exists('_static'):
    html_static_path.append('_static')

# Add RTD Theme only if they aren't overriding it already
using_rtd_theme = (
    (
        'html_theme' in globals() and
        html_theme in ['default'] and
        # Allow people to bail with a hack of having an html_style
        'html_style' not in globals()
    ) or 'html_theme' not in globals()
)
if using_rtd_theme:
    theme = importlib.import_module('sphinx_rtd_theme')
    html_theme = 'sphinx_rtd_theme'
    html_style = None
    html_theme_options = {}
    if 'html_theme_path' in globals():
        html_theme_path.append(theme.get_html_theme_path())
    else:
        html_theme_path = [theme.get_html_theme_path()]

if globals().get('websupport2_base_url', False):
    websupport2_base_url = 'https://readthedocs.com/websupport'
    websupport2_static_url = 'https://assets.readthedocs.com/'


#Add project information to the template context.
context = {
    'using_theme': using_rtd_theme,
    'html_theme': html_theme,
    'current_version': "latest",
    'version_slug': "latest",
    'MEDIA_URL': "https://media.readthedocs.com/media/",
    'STATIC_URL': "https://assets.readthedocs.com/",
    'PRODUCTION_DOMAIN': "readthedocs.com",
    'versions': [
    ("latest", "/en/latest/"),
    ("stable", "/en/stable/"),
    ("release-0.6", "/en/release-0.6/"),
    ],
    'downloads': [ 
    ],
    'subprojects': [ 
    ],
    'slug': 'tiledb-inc-tiledb-py',
    'name': u'TileDB-Py',
    'rtd_language': u'en',
    'programming_language': u'words',
    'canonical_url': 'https://tiledb-inc-tiledb.readthedocs-hosted.com/projects/tiledb-py/en/stable/',
    'analytics_code': 'None',
    'single_version': False,
    'conf_py_path': '/doc/source/',
    'api_host': 'https://readthedocs.com',
    'github_user': 'TileDB-Inc',
    'proxied_api_host': '/_',
    'github_repo': 'TileDB-Py',
    'github_version': 'dev',
    'display_github': True,
    'bitbucket_user': 'None',
    'bitbucket_repo': 'None',
    'bitbucket_version': 'dev',
    'display_bitbucket': False,
    'gitlab_user': 'None',
    'gitlab_repo': 'None',
    'gitlab_version': 'dev',
    'display_gitlab': False,
    'READTHEDOCS': True,
    'using_theme': (html_theme == "default"),
    'new_theme': (html_theme == "sphinx_rtd_theme"),
    'source_suffix': SUFFIX,
    'ad_free': False,
    'docsearch_disabled': False,
    'user_analytics_code': '',
    'global_analytics_code': 'UA-17997319-2',
    'commit': '4f5108c9',
}




if 'html_context' in globals():
    
    html_context.update(context)
    
else:
    html_context = context

# Add custom RTD extension
if 'extensions' in globals():
    # Insert at the beginning because it can interfere
    # with other extensions.
    # See https://github.com/rtfd/readthedocs.org/pull/4054
    extensions.insert(0, "readthedocs_ext.readthedocs")
else:
    extensions = ["readthedocs_ext.readthedocs"]

# Add External version warning banner to the external version documentation
if 'branch' == 'external':
    extensions.insert(1, "readthedocs_ext.external_version_warning")

project_language = 'en'

# User's Sphinx configurations
language_user = globals().get('language', None)
latex_engine_user = globals().get('latex_engine', None)
latex_elements_user = globals().get('latex_elements', None)

# Remove this once xindy gets installed in Docker image and XINDYOPS
# env variable is supported
# https://github.com/rtfd/readthedocs-docker-images/pull/98
latex_use_xindy = False

chinese = any([
    language_user in ('zh_CN', 'zh_TW'),
    project_language in ('zh_CN', 'zh_TW'),
])

japanese = any([
    language_user == 'ja',
    project_language == 'ja',
])

if chinese:
    latex_engine = latex_engine_user or 'xelatex'

    latex_elements_rtd = {
        'preamble': '\\usepackage[UTF8]{ctex}\n',
    }
    latex_elements = latex_elements_user or latex_elements_rtd
elif japanese:
    latex_engine = latex_engine_user or 'platex'

# Make sure our build directory is always excluded
exclude_patterns = globals().get('exclude_patterns', [])
exclude_patterns.extend(['_build'])

[rtd-command-info] start-time: 2020-12-16T17:42:10.344326Z, end-time: 2020-12-16T17:42:13.031424Z, duration: 2, exit-code: 0
python sphinx-build -T -E -b readthedocs -d _build/doctrees-readthedocs -D language=en . _build/html
Running Sphinx v1.8.5
loading translations [en]... done
making output directory...
loading intersphinx inventory from https://tiledb-inc-tiledb.readthedocs-hosted.com/en/latest/objects.inv...
loading intersphinx inventory from https://tiledb-inc-tiledb.readthedocs-hosted.com/projects/python-api/en/latest/objects.inv...
WARNING: failed to reach any of the inventories with the following issues:
intersphinx inventory 'https://tiledb-inc-tiledb.readthedocs-hosted.com/projects/python-api/en/latest/objects.inv' not fetchable due to <class 'requests.exceptions.HTTPError'>: 404 Client Error: Not Found for url: https://tiledb-inc-tiledb.readthedocs-hosted.com/projects/python-api/en/latest/objects.inv
loading intersphinx inventory from https://docs.python.org/objects.inv...
intersphinx inventory has moved: https://docs.python.org/objects.inv -> https://docs.python.org/3/objects.inv
building [mo]: targets for 0 po files that are out of date
building [readthedocs]: targets for 2 source files that are out of date
updating environment: 2 added, 0 changed, 0 removed
reading sources... [ 50%] index
reading sources... [100%] python-api

docstring of tiledb.DenseArray.from_numpy:1: WARNING: Inline strong start-string without end-string.
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
writing output... [ 50%] index
writing output... [100%] python-api

generating indices... genindex
writing additional pages... search
copying static files... done
copying extra files... done
dumping search index in English (code: en) ... done
dumping object inventory... done
build succeeded, 2 warnings.

The HTML pages are in _build/html.
Updating searchtools for Read the Docs search...