Read the Docs build information Build id: 433860 Project: mdolab-pygeo Version: latest Commit: 92f07d2df7e9bff9d7a1f70318992848f0d130b2 Date: 2020-09-27T18:19:23.692170Z State: finished Success: True [rtd-command-info] start-time: 2020-09-27T18:19:25.012729Z, end-time: 2020-09-27T18:19:27.059143Z, duration: 2, exit-code: 0 git clone --no-single-branch --depth 50 https://github.com/mdolab/pygeo.git . Cloning into '.'... [rtd-command-info] start-time: 2020-09-27T18:19:27.615363Z, end-time: 2020-09-27T18:19:27.825249Z, duration: 0, exit-code: 0 git checkout --force origin/master Note: checking out 'origin/master'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at 92f07d2 Update .travis.yml (#43) [rtd-command-info] start-time: 2020-09-27T18:19:27.940997Z, end-time: 2020-09-27T18:19:27.990638Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2020-09-27T18:19:29.195966Z, end-time: 2020-09-27T18:19:32.887321Z, duration: 3, exit-code: 0 python3.7 -mvirtualenv Using base prefix '/home/docs/.pyenv/versions/3.7.3' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-pygeo/envs/latest/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-pygeo/envs/latest/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2020-09-27T18:19:33.017374Z, end-time: 2020-09-27T18:19:33.671432Z, duration: 0, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip Requirement already up-to-date: pip in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-pygeo/envs/latest/lib/python3.7/site-packages (20.2.3) [rtd-command-info] start-time: 2020-09-27T18:19:33.779831Z, end-time: 2020-09-27T18:19:41.615424Z, duration: 7, exit-code: 0 python -m pip install --upgrade --no-cache-dir setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1 Collecting setuptools==41.0.1 Downloading setuptools-41.0.1-py2.py3-none-any.whl (575 kB) Collecting docutils==0.14 Downloading docutils-0.14-py3-none-any.whl (543 kB) Collecting mock==1.0.1 Downloading mock-1.0.1.tar.gz (818 kB) Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 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sphinxcontrib_websupport-1.2.4-py2.py3-none-any.whl (39 kB) Collecting Pygments>=2.0 Downloading Pygments-2.7.1-py3-none-any.whl (944 kB) Collecting imagesize Downloading imagesize-1.2.0-py2.py3-none-any.whl (4.8 kB) Collecting babel!=2.0,>=1.3 Downloading Babel-2.8.0-py2.py3-none-any.whl (8.6 MB) Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.0.0-py2.py3-none-any.whl (97 kB) Collecting MarkupSafe>=0.23 Downloading MarkupSafe-1.1.1-cp37-cp37m-manylinux1_x86_64.whl (27 kB) Collecting pyparsing>=2.0.2 Downloading pyparsing-2.4.7-py2.py3-none-any.whl (67 kB) Collecting certifi>=2017.4.17 Downloading certifi-2020.6.20-py2.py3-none-any.whl (156 kB) Collecting idna<3,>=2.5 Downloading idna-2.10-py2.py3-none-any.whl (58 kB) Collecting chardet<4,>=3.0.2 Downloading chardet-3.0.4-py2.py3-none-any.whl (133 kB) Collecting urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 Downloading urllib3-1.25.10-py2.py3-none-any.whl (127 kB) Collecting sphinxcontrib-serializinghtml Downloading sphinxcontrib_serializinghtml-1.1.4-py2.py3-none-any.whl (89 kB) Collecting pytz>=2015.7 Downloading pytz-2020.1-py2.py3-none-any.whl (510 kB) Building wheels for collected packages: mock, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23754 sha256=8be542c510af3e0cc3bca2bfe14c00c9435768d31ff10605cfd3c8dd8fdbf4f6 Stored in directory: /tmp/pip-ephem-wheel-cache-92jr6nnm/wheels/16/03/37/f0a64ab894c9102906f192db1a4071b7592292ad661563c69b Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491059 sha256=5387de05683f3277e7c8b5f6940c402d5135d6668c2614d6fa79b6231e146304 Stored in directory: /tmp/pip-ephem-wheel-cache-92jr6nnm/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0 Successfully built mock future Installing collected packages: setuptools, docutils, mock, pillow, alabaster, future, commonmark, MarkupSafe, Jinja2, six, pyparsing, packaging, certifi, idna, chardet, urllib3, requests, sphinxcontrib-serializinghtml, sphinxcontrib-websupport, Pygments, imagesize, pytz, babel, snowballstemmer, sphinx, recommonmark, sphinx-rtd-theme, readthedocs-sphinx-ext Attempting uninstall: setuptools Found existing installation: setuptools 50.3.0 Uninstalling setuptools-50.3.0: Successfully uninstalled setuptools-50.3.0 Successfully installed Jinja2-2.11.2 MarkupSafe-1.1.1 Pygments-2.7.1 alabaster-0.7.12 babel-2.8.0 certifi-2020.6.20 chardet-3.0.4 commonmark-0.8.1 docutils-0.14 future-0.18.2 idna-2.10 imagesize-1.2.0 mock-1.0.1 packaging-20.4 pillow-5.4.1 pyparsing-2.4.7 pytz-2020.1 readthedocs-sphinx-ext-1.0.4 recommonmark-0.5.0 requests-2.24.0 setuptools-41.0.1 six-1.15.0 snowballstemmer-2.0.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-serializinghtml-1.1.4 sphinxcontrib-websupport-1.2.4 urllib3-1.25.10 [rtd-command-info] start-time: 2020-09-27T18:19:41.762496Z, end-time: 2020-09-27T18:19:42.559930Z, duration: 0, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r doc/requirements.txt Collecting numpydoc Downloading numpydoc-1.1.0-py3-none-any.whl (47 kB) Requirement already satisfied: sphinx>=1.6.5 in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-pygeo/envs/latest/lib/python3.7/site-packages (from numpydoc->-r doc/requirements.txt (line 1)) (1.8.5) Requirement already satisfied: Jinja2>=2.3 in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-pygeo/envs/latest/lib/python3.7/site-packages (from numpydoc->-r doc/requirements.txt (line 1)) (2.11.2) Requirement already satisfied: snowballstemmer>=1.1 in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-pygeo/envs/latest/lib/python3.7/site-packages (from sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (2.0.0) Requirement already satisfied: requests>=2.0.0 in 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(from sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (1.2.0) Requirement already satisfied: packaging in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-pygeo/envs/latest/lib/python3.7/site-packages (from sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (20.4) Requirement already satisfied: alabaster<0.8,>=0.7 in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-pygeo/envs/latest/lib/python3.7/site-packages (from sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (0.7.12) Requirement already satisfied: babel!=2.0,>=1.3 in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-pygeo/envs/latest/lib/python3.7/site-packages (from sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (2.8.0) Requirement already satisfied: Pygments>=2.0 in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-pygeo/envs/latest/lib/python3.7/site-packages (from sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (2.7.1) Requirement already satisfied: docutils>=0.11 in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-pygeo/envs/latest/lib/python3.7/site-packages (from sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (0.14) Requirement already satisfied: MarkupSafe>=0.23 in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-pygeo/envs/latest/lib/python3.7/site-packages (from Jinja2>=2.3->numpydoc->-r doc/requirements.txt (line 1)) (1.1.1) Requirement already satisfied: certifi>=2017.4.17 in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-pygeo/envs/latest/lib/python3.7/site-packages (from requests>=2.0.0->sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (2020.6.20) Requirement already satisfied: idna<3,>=2.5 in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-pygeo/envs/latest/lib/python3.7/site-packages (from requests>=2.0.0->sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (2.10) Requirement already satisfied: chardet<4,>=3.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-pygeo/envs/latest/lib/python3.7/site-packages (from requests>=2.0.0->sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (3.0.4) Requirement already satisfied: urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-pygeo/envs/latest/lib/python3.7/site-packages (from requests>=2.0.0->sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (1.25.10) Requirement already satisfied: sphinxcontrib-serializinghtml in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-pygeo/envs/latest/lib/python3.7/site-packages (from sphinxcontrib-websupport->sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (1.1.4) Requirement already satisfied: pyparsing>=2.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-pygeo/envs/latest/lib/python3.7/site-packages (from packaging->sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (2.4.7) Requirement already satisfied: pytz>=2015.7 in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-pygeo/envs/latest/lib/python3.7/site-packages (from babel!=2.0,>=1.3->sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (2020.1) Installing collected packages: numpydoc Successfully installed numpydoc-1.1.0 [rtd-command-info] start-time: 2020-09-27T18:19:44.005805Z, end-time: 2020-09-27T18:19:44.075529Z, duration: 0, exit-code: 0 cat doc/conf.py # Configuration file for the Sphinx documentation builder. # # This file only contains a selection of the most common options. For a full # list see the documentation: # https://www.sphinx-doc.org/en/master/usage/configuration.html # -- Path setup -------------------------------------------------------------- # If extensions (or modules to document with autodoc) are in another directory, # add these directories to sys.path here. If the directory is relative to the # documentation root, use os.path.abspath to make it absolute, like shown here. import os import sys # If extensions (or modules to document with autodoc) are in another directory, # add these directories to sys.path here. If the directory is relative to the # documentation root, use os.path.abspath to make it absolute, like shown here. sys.path.insert(0, os.path.abspath("../")) sys.path.insert(0, os.path.abspath("../../")) # -- Project information ----------------------------------------------------- project = u"pyGeo" copyright = u"2020, MDO Lab" # -- General configuration ----------------------------------------------------- # If your documentation needs a minimal Sphinx version, state it here. # needs_sphinx = '1.0' # Add any Sphinx extension module names here, as strings. They can be extensions # coming with Sphinx (named 'sphinx.ext.*') or your custom ones. extensions = ["sphinx.ext.autodoc", "sphinx.ext.imgmath", "sphinx.ext.viewcode", "numpydoc"] # mock import for autodoc autodoc_mock_imports = ["numpy", "mpi4py", "scipy", "pyspline"] numpydoc_show_class_members = False # Add any paths that contain templates here, relative to this directory. templates_path = ["_templates"] # List of patterns, relative to source directory, that match files and # directories to ignore when looking for source files. exclude_patterns = ["_build"] # The master toctree document. master_doc = "index" # -- Options for HTML output --------------------------------------------------- # The theme to use for HTML and HTML Help pages. See the documentation for # a list of builtin themes. html_theme = "sphinx_rtd_theme" # Add any paths that contain custom static files (such as style sheets) here, # relative to this directory. They are copied after the builtin static files, # so a file named "default.css" will overwrite the builtin "default.css". html_static_path = ["_static"] ########################################################################### # auto-created readthedocs.org specific configuration # ########################################################################### # # The following code was added during an automated build on readthedocs.org # It is auto created and injected for every build. The result is based on the # conf.py.tmpl file found in the readthedocs.org codebase: # https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl # import importlib import sys import os.path from six import string_types from sphinx import version_info # Get suffix for proper linking to GitHub # This is deprecated in Sphinx 1.3+, # as each page can have its own suffix if globals().get('source_suffix', False): if isinstance(source_suffix, string_types): SUFFIX = source_suffix elif isinstance(source_suffix, (list, tuple)): # Sphinx >= 1.3 supports list/tuple to define multiple suffixes SUFFIX = source_suffix[0] elif isinstance(source_suffix, dict): # Sphinx >= 1.8 supports a mapping dictionary for multiple suffixes SUFFIX = list(source_suffix.keys())[0] # make a ``list()`` for py2/py3 compatibility else: # default to .rst SUFFIX = '.rst' else: SUFFIX = '.rst' # Add RTD Static Path. Add to the end because it overwrites previous files. if not 'html_static_path' in globals(): html_static_path = [] if os.path.exists('_static'): html_static_path.append('_static') # Add RTD Theme only if they aren't overriding it already using_rtd_theme = ( ( 'html_theme' in globals() and html_theme in ['default'] and # Allow people to bail with a hack of having an html_style 'html_style' not in globals() ) or 'html_theme' not in globals() ) if using_rtd_theme: theme = importlib.import_module('sphinx_rtd_theme') html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} if 'html_theme_path' in globals(): html_theme_path.append(theme.get_html_theme_path()) else: html_theme_path = [theme.get_html_theme_path()] if globals().get('websupport2_base_url', False): websupport2_base_url = 'https://readthedocs.com/websupport' websupport2_static_url = 'https://assets.readthedocs.com/' #Add project information to the template context. context = { 'using_theme': using_rtd_theme, 'html_theme': html_theme, 'current_version': "latest", 'version_slug': "latest", 'MEDIA_URL': "https://media.readthedocs.com/media/", 'STATIC_URL': "https://assets.readthedocs.com/", 'PRODUCTION_DOMAIN': "readthedocs.com", 'versions': [ ("latest", "/en/latest/"), ("stable", "/en/stable/"), ], 'downloads': [ ("pdf", "//mdolab-pygeo.readthedocs-hosted.com/_/downloads/en/latest/pdf/"), ("html", "//mdolab-pygeo.readthedocs-hosted.com/_/downloads/en/latest/htmlzip/"), ("epub", "//mdolab-pygeo.readthedocs-hosted.com/_/downloads/en/latest/epub/"), ], 'subprojects': [ ], 'slug': 'mdolab-pygeo', 'name': u'pygeo', 'rtd_language': u'en', 'programming_language': u'words', 'canonical_url': 'https://mdolab-pygeo.readthedocs-hosted.com/en/latest/', 'analytics_code': 'None', 'single_version': False, 'conf_py_path': '/doc/', 'api_host': 'https://readthedocs.com', 'github_user': 'mdolab', 'proxied_api_host': '/_', 'github_repo': 'pygeo', 'github_version': 'master', 'display_github': True, 'bitbucket_user': 'None', 'bitbucket_repo': 'None', 'bitbucket_version': 'master', 'display_bitbucket': False, 'gitlab_user': 'None', 'gitlab_repo': 'None', 'gitlab_version': 'master', 'display_gitlab': False, 'READTHEDOCS': True, 'using_theme': (html_theme == "default"), 'new_theme': (html_theme == "sphinx_rtd_theme"), 'source_suffix': SUFFIX, 'ad_free': False, 'docsearch_disabled': False, 'user_analytics_code': '', 'global_analytics_code': 'UA-17997319-2', 'commit': '92f07d2d', } if 'html_context' in globals(): html_context.update(context) else: html_context = context # Add custom RTD extension if 'extensions' in globals(): # Insert at the beginning because it can interfere # with other extensions. # See https://github.com/rtfd/readthedocs.org/pull/4054 extensions.insert(0, "readthedocs_ext.readthedocs") else: extensions = ["readthedocs_ext.readthedocs"] # Add External version warning banner to the external version documentation if 'branch' == 'external': extensions.insert(1, "readthedocs_ext.external_version_warning") project_language = 'en' # User's Sphinx configurations language_user = globals().get('language', None) latex_engine_user = globals().get('latex_engine', None) latex_elements_user = globals().get('latex_elements', None) # Remove this once xindy gets installed in Docker image and XINDYOPS # env variable is supported # https://github.com/rtfd/readthedocs-docker-images/pull/98 latex_use_xindy = False chinese = any([ language_user in ('zh_CN', 'zh_TW'), project_language in ('zh_CN', 'zh_TW'), ]) japanese = any([ language_user == 'ja', project_language == 'ja', ]) if chinese: latex_engine = latex_engine_user or 'xelatex' latex_elements_rtd = { 'preamble': '\\usepackage[UTF8]{ctex}\n', } latex_elements = latex_elements_user or latex_elements_rtd elif japanese: latex_engine = latex_engine_user or 'platex' # Make sure our build directory is always excluded exclude_patterns = globals().get('exclude_patterns', []) exclude_patterns.extend(['_build']) [rtd-command-info] start-time: 2020-09-27T18:19:44.281023Z, end-time: 2020-09-27T18:19:49.629367Z, duration: 5, exit-code: 0 python sphinx-build -T -E -b readthedocs -d _build/doctrees-readthedocs -D language=en . _build/html Running Sphinx v1.8.5 loading translations [en]... done making output directory... building [mo]: targets for 0 po files that are out of date building [readthedocs]: targets for 6 source files that are out of date updating environment: 6 added, 0 changed, 0 removed reading sources... [ 16%] DVConstraints reading sources... [ 33%] DVGeometry reading sources... [ 50%] index reading sources... [ 66%] pyBlock reading sources... [ 83%] pyGeo reading sources... [100%] pyNetwork looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 16%] DVConstraints writing output... [ 33%] DVGeometry writing output... [ 50%] index writing output... [ 66%] pyBlock writing output... [ 83%] pyGeo writing output... [100%] pyNetwork generating indices... genindex highlighting module code... [ 20%] pygeo.DVConstraints highlighting module code... [ 40%] pygeo.DVGeometry highlighting module code... [ 60%] pygeo.pyBlock highlighting module code... [ 80%] pygeo.pyGeo highlighting module code... [100%] pygeo.pyNetwork writing additional pages... search copying static files... WARNING: html_static_path entry '/home/docs/checkouts/readthedocs.org/user_builds/mdolab-pygeo/checkouts/latest/doc/_static' does not exist done copying readthedocs static files... done copying searchtools... done copying extra files... done dumping search index in English (code: en) ... done dumping object inventory... done build succeeded, 1 warning. The HTML pages are in _build/html. [rtd-command-info] start-time: 2020-09-27T18:19:49.776056Z, end-time: 2020-09-27T18:19:53.899741Z, duration: 4, exit-code: 0 python sphinx-build -T -b readthedocssinglehtmllocalmedia -d _build/doctrees-readthedocssinglehtmllocalmedia -D language=en . _build/localmedia Running Sphinx v1.8.5 loading translations [en]... done making output directory... building [mo]: targets for 0 po files that are out of date building [readthedocssinglehtmllocalmedia]: all documents updating environment: 6 added, 0 changed, 0 removed reading sources... [ 16%] DVConstraints reading sources... [ 33%] DVGeometry reading sources... [ 50%] index reading sources... [ 66%] pyBlock reading sources... [ 83%] pyGeo reading sources... [100%] pyNetwork looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done assembling single document... DVConstraints DVGeometry pyNetwork pyGeo pyBlock writing... done writing additional files... copying static files... WARNING: html_static_path entry '/home/docs/checkouts/readthedocs.org/user_builds/mdolab-pygeo/checkouts/latest/doc/_static' does not exist done copying readthedocs static files... done copying extra files... done dumping object inventory... done build succeeded, 1 warning. The HTML page is in _build/localmedia. [rtd-command-info] start-time: 2020-09-27T18:19:54.084521Z, end-time: 2020-09-27T18:19:57.148112Z, duration: 3, exit-code: 0 python sphinx-build -b latex -D language=en -d _build/doctrees . _build/latex Running Sphinx v1.8.5 loading translations [en]... done making output directory... building [mo]: targets for 0 po files that are out of date building [latex]: all documents updating environment: 6 added, 0 changed, 0 removed reading sources... [ 16%] DVConstraints reading sources... [ 33%] DVGeometry reading sources... [ 50%] index reading sources... [ 66%] pyBlock reading sources... [ 83%] pyGeo reading sources... [100%] pyNetwork looking for now-outdated files... none found pickling environment... done checking consistency... done processing pyGeo.tex...index DVConstraints DVGeometry pyNetwork pyGeo pyBlock resolving references... writing... done copying TeX support files... done build succeeded. The LaTeX files are in _build/latex. Run 'make' in that directory to run these through (pdf)latex (use `make latexpdf' here to do that automatically). [rtd-command-info] start-time: 2020-09-27T18:19:57.515035Z, end-time: 2020-09-27T18:19:57.564962Z, duration: 0, exit-code: 0 cat latexmkrc $latex = 'latex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $pdflatex = 'pdflatex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $lualatex = 'lualatex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $xelatex = 'xelatex --no-pdf ' . $ENV{'LATEXOPTS'} . ' %O %S'; $makeindex = 'makeindex -s python.ist %O -o %D %S'; add_cus_dep( "glo", "gls", 0, "makeglo" ); sub makeglo { return system( "makeindex -s gglo.ist -o '$_[0].gls' '$_[0].glo'" ); } [rtd-command-info] start-time: 2020-09-27T18:19:57.668367Z, end-time: 2020-09-27T18:19:59.361772Z, duration: 1, exit-code: 0 latexmk -r latexmkrc -pdf -f -dvi- -ps- -jobname=mdolab-pygeo -interaction=nonstopmode Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 1, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 2, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 3, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 4, chunk 1. Subroutine makeglo redefined at (eval 11) line 7, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 1, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 2, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 3, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 4, chunk 1. Latexmk: This is Latexmk, John Collins, 1 January 2015, version: 4.41. File::Glob::glob() will disappear in perl 5.30. Use File::Glob::bsd_glob() instead. at /usr/bin/latexmk line 7482. Rule 'pdflatex': Rules & subrules not known to be previously run: pdflatex Rule 'pdflatex': The following rules & subrules became out-of-date: 'pdflatex' ------------ Run number 1 of rule 'pdflatex' ------------ ------------ Running 'pdflatex -interaction=nonstopmode -recorder --jobname="mdolab-pygeo" "pyGeo.tex"' ------------ Latexmk: applying rule 'pdflatex'... This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./pyGeo.tex LaTeX2e <2017-04-15> Babel <3.18> and hyphenation patterns for 84 language(s) loaded. 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[23] [24] [25] ! LaTeX Error: Too deeply nested. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.2168 \item {} \begin{description} [26] [27] [28] [29] Underfull \hbox (badness 10000) in paragraph at lines 2559--2559 []\T1/ptm/m/it/10 directory\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in-clude-Lo-cal=Tru e\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in-clude-Global=True\T1/ptm/m/n/10 , \T1/ptm/ m/it/10 pointSet=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 call- [30] [31] [32] [33] LaTeX Warning: Hyper reference `DVGeometry:pygeo.DVGeometry.addPointSet' on pag e 34 undefined on input line 2990. [34] [35] [36] Chapter 3. [37] [38] Chapter 4. [39] [40] [41] [42] Chapter 5. Underfull \hbox (badness 10000) in paragraph at lines 3598--3598 []\T1/ptm/m/it/10 coordinates\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pt-Set-Name\T1/pt m/m/n/10 , \T1/ptm/m/it/10 in-te-ri-orOnly=False\T1/ptm/m/n/10 , \T1/ptm/m/it/1 0 face-Freeze=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 eps=1e-12\T1/ptm/m/n/10 , [43] [44] No file mdolab-pygeo.ind. [45] (./mdolab-pygeo.aux) Package rerunfilecheck Warning: File `mdolab-pygeo.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc}< /usr/share/texlive/texmf-dist/fonts/type1/urw/courier/ucrb8a.pfb> Output written on mdolab-pygeo.pdf (49 pages, 272776 bytes). Transcript written on mdolab-pygeo.log. Latexmk: Index file 'mdolab-pygeo.idx' was written Latexmk: Missing input file: 'mdolab-pygeo.ind' from line 'No file mdolab-pygeo.ind.' Latexmk: References changed. Latexmk: References changed. Latexmk: Log file says output to 'mdolab-pygeo.pdf' Rule 'makeindex mdolab-pygeo.idx': File changes, etc: Non-existent destination files: 'mdolab-pygeo.ind' ------------ Run number 1 of rule 'makeindex mdolab-pygeo.idx' ------------ ------------ Running 'makeindex -s python.ist -o "mdolab-pygeo.ind" "mdolab-pygeo.idx"' ------------ Latexmk: applying rule 'makeindex mdolab-pygeo.idx'... This is makeindex, version 2.15 [TeX Live 2017] (kpathsea + Thai support). Scanning style file ./python.ist.......done (7 attributes redefined, 0 ignored). Scanning input file mdolab-pygeo.idx....done (97 entries accepted, 0 rejected). Sorting entries....done (670 comparisons). Generating output file mdolab-pygeo.ind....done (146 lines written, 0 warnings). Output written in mdolab-pygeo.ind. 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(rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc}< /usr/share/texlive/texmf-dist/fonts/type1/urw/courier/ucrb8a.pfb> Output written on mdolab-pygeo.pdf (52 pages, 282040 bytes). Transcript written on mdolab-pygeo.log. Latexmk: Index file 'mdolab-pygeo.idx' was written Latexmk: References changed. Latexmk: Log file says output to 'mdolab-pygeo.pdf' Rule 'pdflatex': File changes, etc: Changed files, or newly in use since previous run(s): 'mdolab-pygeo.aux' 'mdolab-pygeo.out' 'mdolab-pygeo.toc' ------------ Run number 3 of rule 'pdflatex' ------------ ------------ Running 'pdflatex -interaction=nonstopmode -recorder --jobname="mdolab-pygeo" "pyGeo.tex"' ------------ Latexmk: applying rule 'pdflatex'... 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[3] [4] Underfull \hbox (badness 10000) in paragraph at lines 294--294 []\T1/ptm/m/it/10 vols\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lower=1.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 up-per=3.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 scaled=True\T1/ptm /m/n/10 , \T1/ptm/m/it/10 scale=1.0\T1/ptm/m/n/10 , (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pcr.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [5] [6] Underfull \hbox (badness 10000) in paragraph at lines 479--479 []\T1/ptm/m/it/10 wimpressCalc\T1/ptm/m/n/10 , \T1/ptm/m/it/10 po-si-tion\T1/pt m/m/n/10 , \T1/ptm/m/it/10 axis\T1/ptm/m/n/10 , \T1/ptm/m/it/10 thick-Lower=1.0 \T1/ptm/m/n/10 , \T1/ptm/m/it/10 thick-Up-per=3.0\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 479--479 \T1/ptm/m/it/10 thickScaled=True\T1/ptm/m/n/10 , \T1/ptm/m/it/10 MACFr-a-cLower =0.5\T1/ptm/m/n/10 , \T1/ptm/m/it/10 MACFracUp-per=0.6\T1/ptm/m/n/10 , [7] [8] [9] Underfull \hbox (badness 10000) in paragraph at lines 753--753 []\T1/ptm/m/it/10 indSetA\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ind-SetB\T1/ptm/m/n/1 0 , \T1/ptm/m/it/10 fac-torA\T1/ptm/m/n/10 , \T1/ptm/m/it/10 fac-torB\T1/ptm/m/ n/10 , \T1/ptm/m/it/10 lower=0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 up-per=0\T1/ptm/ m/n/10 , [10] [11] Underfull \hbox (badness 5924) in paragraph at lines 1000--1000 []\T1/ptm/m/it/10 axis='y'\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lower=1.0\T1/ptm/m/n /10 , \T1/ptm/m/it/10 up-per=3.0\T1/ptm/m/n/10 , \T1/ptm/m/it/10 scaled=True\T1 /ptm/m/n/10 , \T1/ptm/m/it/10 scale=1.0\T1/ptm/m/n/10 , [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] Chapter 2. [23] [24] [25] ! LaTeX Error: Too deeply nested. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.2168 \item {} \begin{description} [26] [27] [28] [29] Underfull \hbox (badness 10000) in paragraph at lines 2559--2559 []\T1/ptm/m/it/10 directory\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in-clude-Lo-cal=Tru e\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in-clude-Global=True\T1/ptm/m/n/10 , \T1/ptm/ m/it/10 pointSet=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 call- [30] [31] [32] [33] [34] [35] [36] Chapter 3. [37] [38] Chapter 4. [39] [40] [41] [42] Chapter 5. Underfull \hbox (badness 10000) in paragraph at lines 3598--3598 []\T1/ptm/m/it/10 coordinates\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pt-Set-Name\T1/pt m/m/n/10 , \T1/ptm/m/it/10 in-te-ri-orOnly=False\T1/ptm/m/n/10 , \T1/ptm/m/it/1 0 face-Freeze=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 eps=1e-12\T1/ptm/m/n/10 , [43] [44] (./mdolab-pygeo.ind [45] [46] Underfull \hbox (badness 10000) in paragraph at lines 9--10 []\T1/pcr/m/n/10 addCircularityConstraint() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 py- Underfull \hbox (badness 10000) in paragraph at lines 10--11 []\T1/pcr/m/n/10 addColinearityConstraint() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 py- Underfull \hbox (badness 10000) in paragraph at lines 11--13 []\T1/pcr/m/n/10 addCompositeVolumeConstraint() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 py- Underfull \hbox (badness 10000) in paragraph at lines 13--14 []\T1/pcr/m/n/10 addConstraintsPyOpt() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 py-geo.D VConstraints Underfull \hbox (badness 10000) in paragraph at lines 14--15 []\T1/pcr/m/n/10 addCurvatureConstraint() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 py- Underfull \hbox (badness 10000) in paragraph at lines 18--19 []\T1/pcr/m/n/10 addGeoDVSectionLocal() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 py-geo. 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DVGeometry Underfull \hbox (badness 10000) in paragraph at lines 117--118 []\T1/pcr/m/n/10 totalSensitivityProd() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 py-geo. DVGeometry Underfull \hbox (badness 10000) in paragraph at lines 118--119 []\T1/pcr/m/n/10 totalSensitivityTransProd() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 py - Underfull \hbox (badness 10000) in paragraph at lines 123--124 []\T1/pcr/m/n/10 updateCalculations() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 py-geo.DV Geometry Underfull \hbox (badness 10000) in paragraph at lines 134--135 []\T1/pcr/m/n/10 writeSurfaceTecplot() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 py-geo.D VConstraints [48]) (./mdolab-pygeo.aux) ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc}< /usr/share/texlive/texmf-dist/fonts/type1/urw/courier/ucrb8a.pfb> Output written on mdolab-pygeo.pdf (52 pages, 282448 bytes). Transcript written on mdolab-pygeo.log. Latexmk: Index file 'mdolab-pygeo.idx' was written Latexmk: Log file says output to 'mdolab-pygeo.pdf' Collected error summary (may duplicate other messages): pdflatex: Command for 'pdflatex' gave return code 256 Latexmk: Errors, in force_mode: so I tried finishing targets [rtd-command-info] start-time: 2020-09-27T18:19:59.530057Z, end-time: 2020-09-27T18:19:59.588134Z, duration: 0, exit-code: 0 mv -f /home/docs/checkouts/readthedocs.org/user_builds/mdolab-pygeo/checkouts/latest/doc/_build/latex/mdolab-pygeo.pdf /home/docs/checkouts/readthedocs.org/user_builds/mdolab-pygeo/artifacts/latest/sphinx_pdf/mdolab-pygeo.pdf [rtd-command-info] start-time: 2020-09-27T18:19:59.691531Z, end-time: 2020-09-27T18:20:03.671942Z, duration: 3, exit-code: 0 python sphinx-build -T -b epub -d _build/doctrees-epub -D language=en . _build/epub Running Sphinx v1.8.5 loading translations [en]... done making output directory... building [mo]: targets for 0 po files that are out of date building [epub]: targets for 6 source files that are out of date updating environment: 6 added, 0 changed, 0 removed reading sources... 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