Read the Docs build information Build id: 425512 Project: cyverse-cybercarpentry-container-workshop-2018 Version: latest Commit: 64c1b42a36ec26b1b0f20c4b69e998a4e46b9266 Date: 2020-09-18T15:00:13.675482Z State: finished Success: True [rtd-command-info] start-time: 2020-09-18T15:08:11.318800Z, end-time: 2020-09-18T15:08:12.417023Z, duration: 1, exit-code: 0 git clone --no-single-branch --depth 50 https://github.com/CyVerse-learning-materials/cybercarpentry_container_workshop_2018.git . Cloning into '.'... [rtd-command-info] start-time: 2020-09-18T15:08:12.977783Z, end-time: 2020-09-18T15:08:13.218028Z, duration: 0, exit-code: 0 git checkout --force origin/master Note: checking out 'origin/master'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at 64c1b42 add triage issue template [rtd-command-info] start-time: 2020-09-18T15:08:13.630373Z, end-time: 2020-09-18T15:08:13.682515Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2020-09-18T15:08:15.541792Z, end-time: 2020-09-18T15:08:18.768533Z, duration: 3, exit-code: 0 python2.7 -mvirtualenv New python executable in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cybercarpentry-container-workshop-2018/envs/latest/bin/python2.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cybercarpentry-container-workshop-2018/envs/latest/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2020-09-18T15:08:18.998508Z, end-time: 2020-09-18T15:08:19.644971Z, duration: 0, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip DEPRECATION: Python 2.7 reached the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 is no longer maintained. pip 21.0 will drop support for Python 2.7 in January 2021. More details about Python 2 support in pip can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support pip 21.0 will remove support for this functionality. Requirement already up-to-date: pip in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cybercarpentry-container-workshop-2018/envs/latest/lib/python2.7/site-packages (20.2.3) [rtd-command-info] start-time: 2020-09-18T15:08:19.756933Z, end-time: 2020-09-18T15:08:27.695024Z, duration: 7, exit-code: 0 python -m pip install --upgrade --no-cache-dir Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1 DEPRECATION: Python 2.7 reached the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 is no longer maintained. pip 21.0 will drop support for Python 2.7 in January 2021. More details about Python 2 support in pip can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support pip 21.0 will remove support for this functionality. Collecting Pygments==2.3.1 Downloading Pygments-2.3.1-py2.py3-none-any.whl (849 kB) Collecting setuptools==41.0.1 Downloading setuptools-41.0.1-py2.py3-none-any.whl (575 kB) Collecting docutils==0.14 Downloading docutils-0.14-py2-none-any.whl (543 kB) Collecting mock==1.0.1 Downloading mock-1.0.1.tar.gz (818 kB) Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp27-cp27mu-manylinux1_x86_64.whl (2.0 MB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.5-py2.py3-none-any.whl (3.1 MB) Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) Collecting readthedocs-sphinx-ext<1.1 Downloading readthedocs_sphinx_ext-1.0.4-py2.py3-none-any.whl (28 kB) Collecting future Downloading future-0.18.2.tar.gz (829 kB) Collecting imagesize Downloading imagesize-1.2.0-py2.py3-none-any.whl (4.8 kB) Collecting typing; python_version < "3.5" Downloading typing-3.7.4.3-py2-none-any.whl (26 kB) Collecting Jinja2>=2.3 Downloading Jinja2-2.11.2-py2.py3-none-any.whl (125 kB) Collecting packaging Downloading packaging-20.4-py2.py3-none-any.whl (37 kB) Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.0.0-py2.py3-none-any.whl (97 kB) Collecting babel!=2.0,>=1.3 Downloading Babel-2.8.0-py2.py3-none-any.whl (8.6 MB) Collecting six>=1.5 Downloading six-1.15.0-py2.py3-none-any.whl (10 kB) Collecting requests>=2.0.0 Downloading requests-2.24.0-py2.py3-none-any.whl (61 kB) Collecting sphinxcontrib-websupport Downloading sphinxcontrib_websupport-1.1.2-py2.py3-none-any.whl (39 kB) Collecting MarkupSafe>=0.23 Downloading MarkupSafe-1.1.1-cp27-cp27mu-manylinux1_x86_64.whl (24 kB) Collecting pyparsing>=2.0.2 Downloading pyparsing-2.4.7-py2.py3-none-any.whl (67 kB) Collecting pytz>=2015.7 Downloading pytz-2020.1-py2.py3-none-any.whl (510 kB) Collecting urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 Downloading urllib3-1.25.10-py2.py3-none-any.whl (127 kB) Collecting certifi>=2017.4.17 Downloading certifi-2020.6.20-py2.py3-none-any.whl (156 kB) Collecting idna<3,>=2.5 Downloading idna-2.10-py2.py3-none-any.whl (58 kB) Collecting chardet<4,>=3.0.2 Downloading chardet-3.0.4-py2.py3-none-any.whl (133 kB) Building wheels for collected packages: mock, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py2-none-any.whl size=23754 sha256=c6fd92245c3e130084887895ff8ea9fc3995e95dcad8d048724991cc56da82d7 Stored in directory: /tmp/pip-ephem-wheel-cache-4Wqzz0/wheels/ad/62/e0/a06cc957652749e64c7904e899eca3ecb2ec47c60d52653660 Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py2-none-any.whl size=502566 sha256=40990e70072bc590ec22d518c093a61e01a01639531ba67c0d5ae604929e2ef2 Stored in directory: /tmp/pip-ephem-wheel-cache-4Wqzz0/wheels/5f/11/0c/aad680baf5ef4fbcbab992c9f03e1130357e0c173a4fdabfff Successfully built mock future Installing collected packages: Pygments, setuptools, docutils, mock, pillow, alabaster, future, commonmark, imagesize, typing, MarkupSafe, Jinja2, six, pyparsing, packaging, snowballstemmer, pytz, babel, urllib3, certifi, idna, chardet, requests, sphinxcontrib-websupport, sphinx, recommonmark, sphinx-rtd-theme, readthedocs-sphinx-ext Attempting uninstall: setuptools Found existing installation: setuptools 44.1.1 Uninstalling setuptools-44.1.1: Successfully uninstalled setuptools-44.1.1 Successfully installed Jinja2-2.11.2 MarkupSafe-1.1.1 Pygments-2.3.1 alabaster-0.7.12 babel-2.8.0 certifi-2020.6.20 chardet-3.0.4 commonmark-0.8.1 docutils-0.14 future-0.18.2 idna-2.10 imagesize-1.2.0 mock-1.0.1 packaging-20.4 pillow-5.4.1 pyparsing-2.4.7 pytz-2020.1 readthedocs-sphinx-ext-1.0.4 recommonmark-0.5.0 requests-2.24.0 setuptools-41.0.1 six-1.15.0 snowballstemmer-2.0.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-websupport-1.1.2 typing-3.7.4.3 urllib3-1.25.10 [rtd-command-info] start-time: 2020-09-18T15:08:27.880333Z, end-time: 2020-09-18T15:08:30.404761Z, duration: 2, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r requirements.txt DEPRECATION: Python 2.7 reached the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 is no longer maintained. pip 21.0 will drop support for Python 2.7 in January 2021. More details about Python 2 support in pip can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support pip 21.0 will remove support for this functionality. Requirement already satisfied: sphinx in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cybercarpentry-container-workshop-2018/envs/latest/lib/python2.7/site-packages (from -r requirements.txt (line 1)) (1.8.5) Requirement already satisfied: recommonmark in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cybercarpentry-container-workshop-2018/envs/latest/lib/python2.7/site-packages (from -r requirements.txt (line 2)) (0.5.0) Collecting sphinxcontrib-images Downloading sphinxcontrib_images-0.9.2-py2.py3-none-any.whl (63 kB) Collecting sphinx_bootstrap_theme Downloading sphinx-bootstrap-theme-0.7.1.tar.gz (1.2 MB) Collecting guzzle_sphinx_theme==0.7.11 Downloading guzzle_sphinx_theme-0.7.11.tar.gz (2.5 MB) Requirement already satisfied: imagesize in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cybercarpentry-container-workshop-2018/envs/latest/lib/python2.7/site-packages (from sphinx->-r requirements.txt (line 1)) (1.2.0) Requirement already satisfied: typing; python_version < "3.5" in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cybercarpentry-container-workshop-2018/envs/latest/lib/python2.7/site-packages (from sphinx->-r requirements.txt (line 1)) (3.7.4.3) Requirement already satisfied: Pygments>=2.0 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cybercarpentry-container-workshop-2018/envs/latest/lib/python2.7/site-packages (from sphinx->-r requirements.txt (line 1)) (2.3.1) Requirement already satisfied: docutils>=0.11 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cybercarpentry-container-workshop-2018/envs/latest/lib/python2.7/site-packages (from sphinx->-r requirements.txt (line 1)) (0.14) Requirement already satisfied: Jinja2>=2.3 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cybercarpentry-container-workshop-2018/envs/latest/lib/python2.7/site-packages (from sphinx->-r requirements.txt (line 1)) (2.11.2) Requirement already satisfied: packaging in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cybercarpentry-container-workshop-2018/envs/latest/lib/python2.7/site-packages (from sphinx->-r requirements.txt (line 1)) (20.4) Requirement already satisfied: alabaster<0.8,>=0.7 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cybercarpentry-container-workshop-2018/envs/latest/lib/python2.7/site-packages (from sphinx->-r requirements.txt (line 1)) (0.7.12) Requirement already satisfied: snowballstemmer>=1.1 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cybercarpentry-container-workshop-2018/envs/latest/lib/python2.7/site-packages (from sphinx->-r requirements.txt (line 1)) (2.0.0) Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cybercarpentry-container-workshop-2018/envs/latest/lib/python2.7/site-packages (from sphinx->-r requirements.txt (line 1)) (41.0.1) Requirement already satisfied: babel!=2.0,>=1.3 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cybercarpentry-container-workshop-2018/envs/latest/lib/python2.7/site-packages (from sphinx->-r requirements.txt (line 1)) (2.8.0) Requirement already satisfied: six>=1.5 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cybercarpentry-container-workshop-2018/envs/latest/lib/python2.7/site-packages (from sphinx->-r requirements.txt (line 1)) (1.15.0) Requirement already satisfied: requests>=2.0.0 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cybercarpentry-container-workshop-2018/envs/latest/lib/python2.7/site-packages (from sphinx->-r requirements.txt (line 1)) (2.24.0) Requirement already satisfied: sphinxcontrib-websupport in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cybercarpentry-container-workshop-2018/envs/latest/lib/python2.7/site-packages (from sphinx->-r requirements.txt (line 1)) (1.1.2) Requirement already satisfied: commonmark>=0.7.3 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cybercarpentry-container-workshop-2018/envs/latest/lib/python2.7/site-packages (from recommonmark->-r requirements.txt (line 2)) (0.8.1) Requirement already satisfied: MarkupSafe>=0.23 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cybercarpentry-container-workshop-2018/envs/latest/lib/python2.7/site-packages (from Jinja2>=2.3->sphinx->-r requirements.txt (line 1)) (1.1.1) Requirement already satisfied: pyparsing>=2.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cybercarpentry-container-workshop-2018/envs/latest/lib/python2.7/site-packages (from packaging->sphinx->-r requirements.txt (line 1)) (2.4.7) Requirement already satisfied: pytz>=2015.7 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cybercarpentry-container-workshop-2018/envs/latest/lib/python2.7/site-packages (from babel!=2.0,>=1.3->sphinx->-r requirements.txt (line 1)) (2020.1) Requirement already satisfied: certifi>=2017.4.17 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cybercarpentry-container-workshop-2018/envs/latest/lib/python2.7/site-packages (from requests>=2.0.0->sphinx->-r requirements.txt (line 1)) (2020.6.20) Requirement already satisfied: urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cybercarpentry-container-workshop-2018/envs/latest/lib/python2.7/site-packages (from requests>=2.0.0->sphinx->-r requirements.txt (line 1)) (1.25.10) Requirement already satisfied: idna<3,>=2.5 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cybercarpentry-container-workshop-2018/envs/latest/lib/python2.7/site-packages (from requests>=2.0.0->sphinx->-r requirements.txt (line 1)) (2.10) Requirement already satisfied: chardet<4,>=3.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cybercarpentry-container-workshop-2018/envs/latest/lib/python2.7/site-packages (from requests>=2.0.0->sphinx->-r requirements.txt (line 1)) (3.0.4) Requirement already satisfied: future in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cybercarpentry-container-workshop-2018/envs/latest/lib/python2.7/site-packages (from commonmark>=0.7.3->recommonmark->-r requirements.txt (line 2)) (0.18.2) Building wheels for collected packages: sphinx-bootstrap-theme, guzzle-sphinx-theme Building wheel for sphinx-bootstrap-theme (setup.py): started Building wheel for sphinx-bootstrap-theme (setup.py): finished with status 'done' Created wheel for sphinx-bootstrap-theme: filename=sphinx_bootstrap_theme-0.7.1-py2-none-any.whl size=1250221 sha256=cd6f08ec14839815dd9d10205332d7742e7249fcd170d8844154f7caef5b0dd0 Stored in directory: /tmp/pip-ephem-wheel-cache-uNMP8n/wheels/95/93/4e/ce6bc27771a672df0da2021feb26f922e8a74bacdeb9195838 Building wheel for guzzle-sphinx-theme (setup.py): started Building wheel for guzzle-sphinx-theme (setup.py): finished with status 'done' Created wheel for guzzle-sphinx-theme: filename=guzzle_sphinx_theme-0.7.11-py2-none-any.whl size=2555156 sha256=82ceba51cead8832d9bf3d9b2ff4b407554665edc50b1f1fced76d0c92cc96f1 Stored in directory: /tmp/pip-ephem-wheel-cache-uNMP8n/wheels/9d/61/03/c574afdc16ce34de1d382f4d4cdb1eb624fafabe9e0a6988c2 Successfully built sphinx-bootstrap-theme guzzle-sphinx-theme Installing collected packages: sphinxcontrib-images, sphinx-bootstrap-theme, guzzle-sphinx-theme Successfully installed guzzle-sphinx-theme-0.7.11 sphinx-bootstrap-theme-0.7.1 sphinxcontrib-images-0.9.2 [rtd-command-info] start-time: 2020-09-18T15:08:32.415154Z, end-time: 2020-09-18T15:08:32.486054Z, duration: 0, exit-code: 0 cat conf.py #!/usr/bin/env python3 # -*- coding: utf-8 -*- # # General information about the project. import sys import os sys.path.insert(0, os.path.dirname(__file__)) from misc.cyverse_sphinx_conf import * # noqa project = 'Cybercarpentry_workshop_2018' copyright = '2020, CyVerse' author = 'CyVerse' version = '0.1.0' release = '0.1.0' epub_title = project epub_author = author epub_publisher = author epub_copyright = copyright ########################################################################### # auto-created readthedocs.org specific configuration # ########################################################################### # # The following code was added during an automated build on readthedocs.org # It is auto created and injected for every build. The result is based on the # conf.py.tmpl file found in the readthedocs.org codebase: # https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl # import importlib import sys import os.path from six import string_types from sphinx import version_info # Get suffix for proper linking to GitHub # This is deprecated in Sphinx 1.3+, # as each page can have its own suffix if globals().get('source_suffix', False): if isinstance(source_suffix, string_types): SUFFIX = source_suffix elif isinstance(source_suffix, (list, tuple)): # Sphinx >= 1.3 supports list/tuple to define multiple suffixes SUFFIX = source_suffix[0] elif isinstance(source_suffix, dict): # Sphinx >= 1.8 supports a mapping dictionary for multiple suffixes SUFFIX = list(source_suffix.keys())[0] # make a ``list()`` for py2/py3 compatibility else: # default to .rst SUFFIX = '.rst' else: SUFFIX = '.rst' # Add RTD Static Path. Add to the end because it overwrites previous files. if not 'html_static_path' in globals(): html_static_path = [] if os.path.exists('_static'): html_static_path.append('_static') # Add RTD Theme only if they aren't overriding it already using_rtd_theme = ( ( 'html_theme' in globals() and html_theme in ['default'] and # Allow people to bail with a hack of having an html_style 'html_style' not in globals() ) or 'html_theme' not in globals() ) if using_rtd_theme: theme = importlib.import_module('sphinx_rtd_theme') html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} if 'html_theme_path' in globals(): html_theme_path.append(theme.get_html_theme_path()) else: html_theme_path = [theme.get_html_theme_path()] if globals().get('websupport2_base_url', False): websupport2_base_url = 'https://readthedocs.com/websupport' websupport2_static_url = 'https://assets.readthedocs.com/' #Add project information to the template context. context = { 'using_theme': using_rtd_theme, 'html_theme': html_theme, 'current_version': "latest", 'version_slug': "latest", 'MEDIA_URL': "https://media.readthedocs.com/media/", 'STATIC_URL': "https://assets.readthedocs.com/", 'PRODUCTION_DOMAIN': "readthedocs.com", 'versions': [ ("latest", "/en/latest/"), ], 'downloads': [ ("pdf", "//cyverse-cybercarpentry-container-workshop-2018.readthedocs-hosted.com/_/downloads/en/latest/pdf/"), ("html", "//cyverse-cybercarpentry-container-workshop-2018.readthedocs-hosted.com/_/downloads/en/latest/htmlzip/"), ("epub", "//cyverse-cybercarpentry-container-workshop-2018.readthedocs-hosted.com/_/downloads/en/latest/epub/"), ], 'subprojects': [ ], 'slug': 'cyverse-cybercarpentry-container-workshop-2018', 'name': u'cybercarpentry_container_workshop_2018', 'rtd_language': u'en', 'programming_language': u'words', 'canonical_url': 'https://cyverse-cybercarpentry-container-workshop-2018.readthedocs-hosted.com/en/latest/', 'analytics_code': 'UA-72224033-6', 'single_version': False, 'conf_py_path': '/', 'api_host': 'https://readthedocs.com', 'github_user': 'CyVerse-learning-materials', 'proxied_api_host': '/_', 'github_repo': 'cybercarpentry_container_workshop_2018', 'github_version': 'master', 'display_github': True, 'bitbucket_user': 'None', 'bitbucket_repo': 'None', 'bitbucket_version': 'master', 'display_bitbucket': False, 'gitlab_user': 'None', 'gitlab_repo': 'None', 'gitlab_version': 'master', 'display_gitlab': False, 'READTHEDOCS': True, 'using_theme': (html_theme == "default"), 'new_theme': (html_theme == "sphinx_rtd_theme"), 'source_suffix': SUFFIX, 'ad_free': False, 'docsearch_disabled': False, 'user_analytics_code': 'UA-72224033-6', 'global_analytics_code': 'UA-17997319-2', 'commit': '64c1b42a', } if 'html_context' in globals(): html_context.update(context) else: html_context = context # Add custom RTD extension if 'extensions' in globals(): # Insert at the beginning because it can interfere # with other extensions. # See https://github.com/rtfd/readthedocs.org/pull/4054 extensions.insert(0, "readthedocs_ext.readthedocs") else: extensions = ["readthedocs_ext.readthedocs"] # Add External version warning banner to the external version documentation if 'branch' == 'external': extensions.insert(1, "readthedocs_ext.external_version_warning") project_language = 'en' # User's Sphinx configurations language_user = globals().get('language', None) latex_engine_user = globals().get('latex_engine', None) latex_elements_user = globals().get('latex_elements', None) # Remove this once xindy gets installed in Docker image and XINDYOPS # env variable is supported # https://github.com/rtfd/readthedocs-docker-images/pull/98 latex_use_xindy = False chinese = any([ language_user in ('zh_CN', 'zh_TW'), project_language in ('zh_CN', 'zh_TW'), ]) japanese = any([ language_user == 'ja', project_language == 'ja', ]) if chinese: latex_engine = latex_engine_user or 'xelatex' latex_elements_rtd = { 'preamble': '\\usepackage[UTF8]{ctex}\n', } latex_elements = latex_elements_user or latex_elements_rtd elif japanese: latex_engine = latex_engine_user or 'platex' # Make sure our build directory is always excluded exclude_patterns = globals().get('exclude_patterns', []) exclude_patterns.extend(['_build']) [rtd-command-info] start-time: 2020-09-18T15:08:33.136230Z, end-time: 2020-09-18T15:08:34.962185Z, duration: 1, exit-code: 0 python sphinx-build -T -E -b readthedocs -d _build/doctrees-readthedocs -D language=en . _build/html Running Sphinx v1.8.5 loading translations [en]... done making output directory... building [mo]: targets for 0 po files that are out of date building [readthedocs]: targets for 15 source files that are out of date updating environment: 15 added, 0 changed, 0 removed reading sources... 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' %O %S'; $makeindex = 'makeindex -s python.ist %O -o %D %S'; add_cus_dep( "glo", "gls", 0, "makeglo" ); sub makeglo { return system( "makeindex -s gglo.ist -o '$_[0].gls' '$_[0].glo'" ); } [rtd-command-info] start-time: 2020-09-18T15:08:43.652936Z, end-time: 2020-09-18T15:09:00.634524Z, duration: 16, exit-code: 0 latexmk -r latexmkrc -pdf -f -dvi- -ps- -jobname=cyverse-cybercarpentry-container-workshop-2018 -interaction=nonstopmode Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 1, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 2, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 3, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 4, chunk 1. Subroutine makeglo redefined at (eval 11) line 7, chunk 1. 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[27] [28 <./bind_mount.png>] [29] [30] Overfull \hbox (94.86829pt too wide) in paragraph at lines 1140--1141 [] [31 <./dc-1.png>] ! Package inputenc Error: Unicode char   (U+200A) (inputenc) not set up for use with LaTeX. See the inputenc package documentation for explanation. Type H for immediate help. ... l.1203 ...your version of Linux/Windows/OSX/OS9  — well this is where D... ! Package inputenc Error: Unicode char   (U+200A) (inputenc) not set up for use with LaTeX. See the inputenc package documentation for explanation. Type H for immediate help. ... l.1203 ...ersion of Linux/Windows/OSX/OS9 —  well this is where Docker ... 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[79] [80] Chapter 13. (./cyverse-cybercarpentry-container-workshop-2018.ind) [81] (./cyverse-cybercarpentry-container-workshop-2018.aux) ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on cyverse-cybercarpentry-container-workshop-2018.pdf (85 pages, 3419406 bytes). Transcript written on cyverse-cybercarpentry-container-workshop-2018.log. Latexmk: Index file 'cyverse-cybercarpentry-container-workshop-2018.idx' was written Latexmk: Log file says output to 'cyverse-cybercarpentry-container-workshop-2018.pdf' Latexmk: Log file says output to 'cyverse-cybercarpentry-container-workshop-2018.pdf' Rule 'pdflatex': File changes, etc: Changed files, or newly in use since previous run(s): 'cyverse-cybercarpentry-container-workshop-2018.out' 'cyverse-cybercarpentry-container-workshop-2018.toc' ------------ Run number 3 of rule 'pdflatex' ------------ ------------ Running 'pdflatex -interaction=nonstopmode -recorder --jobname="cyverse-cybercarpentry-container-workshop-2018" "CyVerseDocumentation.tex"' ------------ Latexmk: applying rule 'pdflatex'... This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./CyVerseDocumentation.tex LaTeX2e <2017-04-15> Babel <3.18> and hyphenation patterns for 84 language(s) loaded. 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(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [3] [4] Chapter 2. Underfull \hbox (badness 7344) in paragraph at lines 160--164 \T1/ptm/m/n/10 We \T1/ptm/b/n/10 strongly rec-om-mend \T1/ptm/m/n/10 Fire- [5] [6] Chapter 3. Underfull \hbox (badness 10000) in paragraph at lines 278--279 []|\T1/ptm/m/n/10 Introduction to Docker Underfull \hbox (badness 10000) in paragraph at lines 302--303 []|\T1/ptm/m/n/10 General overview of Underfull \hbox (badness 10000) in paragraph at lines 302--303 \T1/ptm/m/n/10 Sin-gu-lar-ity (Up-en-dra Underfull \hbox (badness 10000) in paragraph at lines 2--306 [][][]\T1/ptm/m/n/10 Singularity [7] [8] Chapter 4. [9] [10] Chapter 5. 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[27] [28 <./bind_mount.png>] [29] [30] Overfull \hbox (94.86829pt too wide) in paragraph at lines 1140--1141 [] [31 <./dc-1.png>] ! Package inputenc Error: Unicode char   (U+200A) (inputenc) not set up for use with LaTeX. See the inputenc package documentation for explanation. Type H for immediate help. ... l.1203 ...your version of Linux/Windows/OSX/OS9  — well this is where D... ! Package inputenc Error: Unicode char   (U+200A) (inputenc) not set up for use with LaTeX. See the inputenc package documentation for explanation. Type H for immediate help. ... l.1203 ...ersion of Linux/Windows/OSX/OS9 —  well this is where Docker ... [32] Overfull \hbox (94.84164pt too wide) in paragraph at lines 1243--1244 [] Overfull \hbox (94.86699pt too wide) in paragraph at lines 1247--1248 [] [33 <./jn_login.png>] Overfull \hbox (94.86786pt too wide) in paragraph at lines 1251--1252 [] Overfull \hbox (94.85683pt too wide) in paragraph at lines 1253--1254 [] [34 <./jn_login2.png> <./jn_login3.png>] Overfull \hbox (94.86522pt too wide) in paragraph at lines 1259--1260 [] ! Package inputenc Error: Unicode char   (U+200A) (inputenc) not set up for use with LaTeX. See the inputenc package documentation for explanation. Type H for immediate help. ... l.1261 ...r compose file. And there you have it  — a quick and easy way... ! Package inputenc Error: Unicode char   (U+200A) (inputenc) not set up for use with LaTeX. See the inputenc package documentation for explanation. Type H for immediate help. ... l.1261 ...ose file. And there you have it —  a quick and easy way to st... 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[79] [80] Chapter 13. (./cyverse-cybercarpentry-container-workshop-2018.ind) [81] (./cyverse-cybercarpentry-container-workshop-2018.aux) ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on cyverse-cybercarpentry-container-workshop-2018.pdf (85 pages, 3419406 bytes). Transcript written on cyverse-cybercarpentry-container-workshop-2018.log. Latexmk: Index file 'cyverse-cybercarpentry-container-workshop-2018.idx' was written Latexmk: Log file says output to 'cyverse-cybercarpentry-container-workshop-2018.pdf' Latexmk: Log file says output to 'cyverse-cybercarpentry-container-workshop-2018.pdf' Collected error summary (may duplicate other messages): pdflatex: Command for 'pdflatex' gave return code 256 Latexmk: Errors, in force_mode: so I tried finishing targets [rtd-command-info] start-time: 2020-09-18T15:09:00.863043Z, end-time: 2020-09-18T15:09:00.915765Z, duration: 0, exit-code: 0 mv -f /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cybercarpentry-container-workshop-2018/checkouts/latest/./_build/latex/cyverse-cybercarpentry-container-workshop-2018.pdf /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cybercarpentry-container-workshop-2018/artifacts/latest/sphinx_pdf/cyverse-cybercarpentry-container-workshop-2018.pdf [rtd-command-info] start-time: 2020-09-18T15:09:01.231890Z, end-time: 2020-09-18T15:09:03.140662Z, duration: 1, exit-code: 0 python sphinx-build -T -b epub -d _build/doctrees-epub -D language=en . _build/epub Running Sphinx v1.8.5 loading translations [en]... done making output directory... building [mo]: targets for 0 po files that are out of date building [epub]: targets for 15 source files that are out of date updating environment: 15 added, 0 changed, 0 removed reading sources... 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