Read the Docs build information Build id: 374719 Project: northeastern-university-rc-public-documentation Version: latest Commit: ecf0cc3f7724d3e1b06a5c14857ed8a8f9076d89 Date: 2020-07-22T21:00:32.416597Z State: finished Success: True [rtd-command-info] start-time: 2020-07-22T21:00:35.842967Z, end-time: 2020-07-22T21:00:37.629576Z, duration: 1, exit-code: 0 git clone --no-single-branch --depth 50 https://github.com/neu-rc-admin/rc-public-documentation.git . Cloning into '.'... [rtd-command-info] start-time: 2020-07-22T21:00:38.112555Z, end-time: 2020-07-22T21:00:38.679298Z, duration: 0, exit-code: 0 git checkout --force origin/master Note: checking out 'origin/master'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at ecf0cc3 short update [rtd-command-info] start-time: 2020-07-22T21:00:38.971039Z, end-time: 2020-07-22T21:00:39.166026Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2020-07-22T21:00:41.123522Z, end-time: 2020-07-22T21:00:45.116555Z, duration: 3, exit-code: 0 python3.7 -mvirtualenv Using base prefix '/home/docs/.pyenv/versions/3.7.3' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/envs/latest/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/envs/latest/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2020-07-22T21:00:45.333430Z, end-time: 2020-07-22T21:00:46.140859Z, duration: 0, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip Requirement already up-to-date: pip in /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/envs/latest/lib/python3.7/site-packages (20.1.1) [rtd-command-info] start-time: 2020-07-22T21:00:46.263351Z, end-time: 2020-07-22T21:00:55.863620Z, duration: 9, exit-code: 0 python -m pip install --upgrade --no-cache-dir Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1 Collecting Pygments==2.3.1 Downloading Pygments-2.3.1-py2.py3-none-any.whl (849 kB) Collecting setuptools==41.0.1 Downloading setuptools-41.0.1-py2.py3-none-any.whl (575 kB) Collecting docutils==0.14 Downloading docutils-0.14-py3-none-any.whl (543 kB) Collecting mock==1.0.1 Downloading mock-1.0.1.tar.gz (818 kB) Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.5-py2.py3-none-any.whl (3.1 MB) Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) Collecting readthedocs-sphinx-ext<1.1 Downloading readthedocs_sphinx_ext-1.0.4-py2.py3-none-any.whl (28 kB) Collecting future Downloading future-0.18.2.tar.gz (829 kB) Collecting sphinxcontrib-websupport Downloading sphinxcontrib_websupport-1.2.3-py2.py3-none-any.whl (39 kB) Collecting packaging Downloading packaging-20.4-py2.py3-none-any.whl (37 kB) Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.0.0-py2.py3-none-any.whl (97 kB) Collecting six>=1.5 Downloading six-1.15.0-py2.py3-none-any.whl (10 kB) Collecting requests>=2.0.0 Downloading requests-2.24.0-py2.py3-none-any.whl (61 kB) Collecting babel!=2.0,>=1.3 Downloading Babel-2.8.0-py2.py3-none-any.whl (8.6 MB) Collecting imagesize Downloading imagesize-1.2.0-py2.py3-none-any.whl (4.8 kB) Collecting Jinja2>=2.3 Downloading Jinja2-2.11.2-py2.py3-none-any.whl (125 kB) Collecting pyparsing>=2.0.2 Downloading pyparsing-2.4.7-py2.py3-none-any.whl (67 kB) Collecting chardet<4,>=3.0.2 Downloading chardet-3.0.4-py2.py3-none-any.whl (133 kB) Collecting idna<3,>=2.5 Downloading idna-2.10-py2.py3-none-any.whl (58 kB) Collecting urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 Downloading urllib3-1.25.10-py2.py3-none-any.whl (127 kB) Collecting certifi>=2017.4.17 Downloading certifi-2020.6.20-py2.py3-none-any.whl (156 kB) Collecting pytz>=2015.7 Downloading pytz-2020.1-py2.py3-none-any.whl (510 kB) Collecting MarkupSafe>=0.23 Downloading MarkupSafe-1.1.1-cp37-cp37m-manylinux1_x86_64.whl (27 kB) Building wheels for collected packages: mock, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23754 sha256=01bb5e91cef59c78f8a677705a9cd1a30ea6c116f9dd09c2a36d2d8ccb1ad5a6 Stored in directory: /tmp/pip-ephem-wheel-cache-h_cd2oc8/wheels/16/03/37/f0a64ab894c9102906f192db1a4071b7592292ad661563c69b Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491058 sha256=5fc10fb0d734fb25c9f6f89930d3c60d796ede912dbfc44845488470342a33c3 Stored in directory: /tmp/pip-ephem-wheel-cache-h_cd2oc8/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0 Successfully built mock future Installing collected packages: Pygments, setuptools, docutils, mock, pillow, alabaster, future, commonmark, sphinxcontrib-websupport, six, pyparsing, packaging, snowballstemmer, chardet, idna, urllib3, certifi, requests, pytz, babel, imagesize, MarkupSafe, Jinja2, sphinx, recommonmark, sphinx-rtd-theme, readthedocs-sphinx-ext Attempting uninstall: setuptools Found existing installation: setuptools 49.2.0 Uninstalling setuptools-49.2.0: Successfully uninstalled setuptools-49.2.0 Successfully installed Jinja2-2.11.2 MarkupSafe-1.1.1 Pygments-2.3.1 alabaster-0.7.12 babel-2.8.0 certifi-2020.6.20 chardet-3.0.4 commonmark-0.8.1 docutils-0.14 future-0.18.2 idna-2.10 imagesize-1.2.0 mock-1.0.1 packaging-20.4 pillow-5.4.1 pyparsing-2.4.7 pytz-2020.1 readthedocs-sphinx-ext-1.0.4 recommonmark-0.5.0 requests-2.24.0 setuptools-41.0.1 six-1.15.0 snowballstemmer-2.0.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-websupport-1.2.3 urllib3-1.25.10 [rtd-command-info] start-time: 2020-07-22T21:00:56.079172Z, end-time: 2020-07-22T21:00:57.150462Z, duration: 1, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r docs/requirements.txt Collecting sphinx-markdown-tables==0.0.12 Downloading sphinx_markdown_tables-0.0.12-py3-none-any.whl (15 kB) Requirement already satisfied: sphinx-rtd-theme==0.4.3 in /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/envs/latest/lib/python3.7/site-packages (from -r docs/requirements.txt (line 2)) (0.4.3) Collecting markdown==3.0.1 Downloading Markdown-3.0.1-py2.py3-none-any.whl (89 kB) Requirement already satisfied: sphinx in /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/envs/latest/lib/python3.7/site-packages (from sphinx-rtd-theme==0.4.3->-r docs/requirements.txt (line 2)) (1.8.5) Requirement already satisfied: snowballstemmer>=1.1 in /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/envs/latest/lib/python3.7/site-packages (from sphinx->sphinx-rtd-theme==0.4.3->-r docs/requirements.txt (line 2)) (2.0.0) Requirement already satisfied: requests>=2.0.0 in /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/envs/latest/lib/python3.7/site-packages (from sphinx->sphinx-rtd-theme==0.4.3->-r docs/requirements.txt (line 2)) (2.24.0) Requirement already satisfied: sphinxcontrib-websupport in /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/envs/latest/lib/python3.7/site-packages (from sphinx->sphinx-rtd-theme==0.4.3->-r docs/requirements.txt (line 2)) (1.2.3) Requirement already satisfied: Pygments>=2.0 in /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/envs/latest/lib/python3.7/site-packages (from sphinx->sphinx-rtd-theme==0.4.3->-r docs/requirements.txt (line 2)) (2.3.1) Requirement already satisfied: six>=1.5 in /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/envs/latest/lib/python3.7/site-packages (from sphinx->sphinx-rtd-theme==0.4.3->-r docs/requirements.txt (line 2)) (1.15.0) Requirement already satisfied: packaging in /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/envs/latest/lib/python3.7/site-packages (from sphinx->sphinx-rtd-theme==0.4.3->-r docs/requirements.txt (line 2)) (20.4) Requirement already satisfied: Jinja2>=2.3 in /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/envs/latest/lib/python3.7/site-packages (from sphinx->sphinx-rtd-theme==0.4.3->-r docs/requirements.txt (line 2)) (2.11.2) Requirement already satisfied: alabaster<0.8,>=0.7 in /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/envs/latest/lib/python3.7/site-packages (from sphinx->sphinx-rtd-theme==0.4.3->-r docs/requirements.txt (line 2)) (0.7.12) Requirement already satisfied: imagesize in /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/envs/latest/lib/python3.7/site-packages (from sphinx->sphinx-rtd-theme==0.4.3->-r docs/requirements.txt (line 2)) (1.2.0) Requirement already satisfied: babel!=2.0,>=1.3 in /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/envs/latest/lib/python3.7/site-packages (from sphinx->sphinx-rtd-theme==0.4.3->-r docs/requirements.txt (line 2)) (2.8.0) Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/envs/latest/lib/python3.7/site-packages (from sphinx->sphinx-rtd-theme==0.4.3->-r docs/requirements.txt (line 2)) (41.0.1) Requirement already satisfied: docutils>=0.11 in /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/envs/latest/lib/python3.7/site-packages (from sphinx->sphinx-rtd-theme==0.4.3->-r docs/requirements.txt (line 2)) (0.14) Requirement already satisfied: idna<3,>=2.5 in /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/envs/latest/lib/python3.7/site-packages (from requests>=2.0.0->sphinx->sphinx-rtd-theme==0.4.3->-r docs/requirements.txt (line 2)) (2.10) Requirement already satisfied: urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 in /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/envs/latest/lib/python3.7/site-packages (from requests>=2.0.0->sphinx->sphinx-rtd-theme==0.4.3->-r docs/requirements.txt (line 2)) (1.25.10) Requirement already satisfied: certifi>=2017.4.17 in /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/envs/latest/lib/python3.7/site-packages (from requests>=2.0.0->sphinx->sphinx-rtd-theme==0.4.3->-r docs/requirements.txt (line 2)) (2020.6.20) Requirement already satisfied: chardet<4,>=3.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/envs/latest/lib/python3.7/site-packages (from requests>=2.0.0->sphinx->sphinx-rtd-theme==0.4.3->-r docs/requirements.txt (line 2)) (3.0.4) Requirement already satisfied: pyparsing>=2.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/envs/latest/lib/python3.7/site-packages (from packaging->sphinx->sphinx-rtd-theme==0.4.3->-r docs/requirements.txt (line 2)) (2.4.7) Requirement already satisfied: MarkupSafe>=0.23 in /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/envs/latest/lib/python3.7/site-packages (from Jinja2>=2.3->sphinx->sphinx-rtd-theme==0.4.3->-r docs/requirements.txt (line 2)) (1.1.1) Requirement already satisfied: pytz>=2015.7 in /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/envs/latest/lib/python3.7/site-packages (from babel!=2.0,>=1.3->sphinx->sphinx-rtd-theme==0.4.3->-r docs/requirements.txt (line 2)) (2020.1) Installing collected packages: markdown, sphinx-markdown-tables Successfully installed markdown-3.0.1 sphinx-markdown-tables-0.0.12 [rtd-command-info] start-time: 2020-07-22T21:00:58.708700Z, end-time: 2020-07-22T21:00:58.926366Z, duration: 0, exit-code: 0 cat docs/source/conf.py # Configuration file for the Sphinx documentation builder. # # This file only contains a selection of the most common options. For a full # list see the documentation: # http://www.sphinx-doc.org/en/master/config # -- Path setup -------------------------------------------------------------- # If extensions (or modules to document with autodoc) are in another directory, # add these directories to sys.path here. If the directory is relative to the # documentation root, use os.path.abspath to make it absolute, like shown here. # # import os # import sys # sys.path.insert(0, os.path.abspath('.')) # -- Project information ----------------------------------------------------- project = 'Northeastern University Research Computing' copyright = '2019-2020, Northeastern University Research Computing' author = 'Northeastern University Research Computing' # The full version, including alpha/beta/rc tags release = '0.0.2' # -- General configuration --------------------------------------------------- # Add any Sphinx extension module names here, as strings. They can be # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom # ones. extensions = [ 'sphinx_markdown_tables', ] # Add any paths that contain templates here, relative to this directory. templates_path = ['_templates'] # List of patterns, relative to source directory, that match files and # directories to ignore when looking for source files. # This pattern also affects html_static_path and html_extra_path. exclude_patterns = [] # -- Options for HTML output ------------------------------------------------- # The theme to use for HTML and HTML Help pages. See the documentation for # a list of builtin themes. # html_theme = 'sphinx_rtd_theme' #add logo to the upper left in the help system html_logo = 'images/NU_logo_small.png' html_theme_options = { 'logo_only': True } #If true, “(C) Copyright …” is shown in the HTML footer. Default is True. html_show_copyright = True #If true, “Created using Sphinx” is shown in the HTML footer. Default is True. html_show_sphinx = False # Add any paths that contain custom static files (such as style sheets) here, # relative to this directory. They are copied after the builtin static files, # so a file named "default.css" will overwrite the builtin "default.css". html_static_path = ['_static'] master_doc = 'index' #source_suffix = ['.rst'] ########################################################################### # auto-created readthedocs.org specific configuration # ########################################################################### # # The following code was added during an automated build on readthedocs.org # It is auto created and injected for every build. The result is based on the # conf.py.tmpl file found in the readthedocs.org codebase: # https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl # import importlib import sys import os.path from six import string_types from sphinx import version_info # Get suffix for proper linking to GitHub # This is deprecated in Sphinx 1.3+, # as each page can have its own suffix if globals().get('source_suffix', False): if isinstance(source_suffix, string_types): SUFFIX = source_suffix elif isinstance(source_suffix, (list, tuple)): # Sphinx >= 1.3 supports list/tuple to define multiple suffixes SUFFIX = source_suffix[0] elif isinstance(source_suffix, dict): # Sphinx >= 1.8 supports a mapping dictionary for multiple suffixes SUFFIX = list(source_suffix.keys())[0] # make a ``list()`` for py2/py3 compatibility else: # default to .rst SUFFIX = '.rst' else: SUFFIX = '.rst' # Add RTD Static Path. Add to the end because it overwrites previous files. if not 'html_static_path' in globals(): html_static_path = [] if os.path.exists('_static'): html_static_path.append('_static') # Add RTD Theme only if they aren't overriding it already using_rtd_theme = ( ( 'html_theme' in globals() and html_theme in ['default'] and # Allow people to bail with a hack of having an html_style 'html_style' not in globals() ) or 'html_theme' not in globals() ) if using_rtd_theme: theme = importlib.import_module('sphinx_rtd_theme') html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} if 'html_theme_path' in globals(): html_theme_path.append(theme.get_html_theme_path()) else: html_theme_path = [theme.get_html_theme_path()] if globals().get('websupport2_base_url', False): websupport2_base_url = 'https://readthedocs.com/websupport' websupport2_static_url = 'https://assets.readthedocs.com/' #Add project information to the template context. context = { 'using_theme': using_rtd_theme, 'html_theme': html_theme, 'current_version': "latest", 'version_slug': "latest", 'MEDIA_URL': "https://media.readthedocs.com/media/", 'STATIC_URL': "https://assets.readthedocs.com/", 'PRODUCTION_DOMAIN': "readthedocs.com", 'versions': [ ("latest", "/en/latest/"), ], 'downloads': [ ("pdf", "//rc-docs.northeastern.edu/_/downloads/en/latest/pdf/"), ("html", "//rc-docs.northeastern.edu/_/downloads/en/latest/htmlzip/"), ("epub", "//rc-docs.northeastern.edu/_/downloads/en/latest/epub/"), ], 'subprojects': [ ], 'slug': 'northeastern-university-rc-public-documentation', 'name': u'rc-public-documentation', 'rtd_language': u'en', 'programming_language': u'words', 'canonical_url': 'https://rc-docs.northeastern.edu/en/latest/', 'analytics_code': 'UA-53190950-13', 'single_version': False, 'conf_py_path': '/docs/source/', 'api_host': 'https://readthedocs.com', 'github_user': 'neu-rc-admin', 'proxied_api_host': '/_', 'github_repo': 'rc-public-documentation', 'github_version': 'master', 'display_github': True, 'bitbucket_user': 'None', 'bitbucket_repo': 'None', 'bitbucket_version': 'master', 'display_bitbucket': False, 'gitlab_user': 'None', 'gitlab_repo': 'None', 'gitlab_version': 'master', 'display_gitlab': False, 'READTHEDOCS': True, 'using_theme': (html_theme == "default"), 'new_theme': (html_theme == "sphinx_rtd_theme"), 'source_suffix': SUFFIX, 'ad_free': False, 'docsearch_disabled': False, 'user_analytics_code': 'UA-53190950-13', 'global_analytics_code': 'UA-17997319-2', 'commit': 'ecf0cc3f', } if 'html_context' in globals(): html_context.update(context) else: html_context = context # Add custom RTD extension if 'extensions' in globals(): # Insert at the beginning because it can interfere # with other extensions. # See https://github.com/rtfd/readthedocs.org/pull/4054 extensions.insert(0, "readthedocs_ext.readthedocs") else: extensions = ["readthedocs_ext.readthedocs"] # Add External version warning banner to the external version documentation if 'branch' == 'external': extensions.insert(1, "readthedocs_ext.external_version_warning") project_language = 'en' # User's Sphinx configurations language_user = globals().get('language', None) latex_engine_user = globals().get('latex_engine', None) latex_elements_user = globals().get('latex_elements', None) # Remove this once xindy gets installed in Docker image and XINDYOPS # env variable is supported # https://github.com/rtfd/readthedocs-docker-images/pull/98 latex_use_xindy = False chinese = any([ language_user in ('zh_CN', 'zh_TW'), project_language in ('zh_CN', 'zh_TW'), ]) japanese = any([ language_user == 'ja', project_language == 'ja', ]) if chinese: latex_engine = latex_engine_user or 'xelatex' latex_elements_rtd = { 'preamble': '\\usepackage[UTF8]{ctex}\n', } latex_elements = latex_elements_user or latex_elements_rtd elif japanese: latex_engine = latex_engine_user or 'platex' [rtd-command-info] start-time: 2020-07-22T21:00:59.030459Z, end-time: 2020-07-22T21:01:00.892528Z, duration: 1, exit-code: 0 python sphinx-build -T -E -b readthedocs -d _build/doctrees-readthedocs -D language=en . _build/html Running Sphinx v1.8.5 loading translations [en]... done making output directory... building [mo]: targets for 0 po files that are out of date building [readthedocs]: targets for 21 source files that are out of date updating environment: 21 added, 0 changed, 0 removed reading sources... [ 4%] classroom/class_use reading sources... [ 9%] get_started/connect reading sources... [ 14%] get_started/get_access reading sources... [ 19%] hardware/hardware_overview reading sources... [ 23%] hardware/partitions reading sources... [ 28%] index reading sources... [ 33%] software/matlab reading sources... [ 38%] software/modules reading sources... [ 42%] software/software reading sources... [ 47%] storage/discovery_storage reading sources... [ 52%] storage/general_storage reading sources... [ 57%] using-discovery/globus reading sources... [ 61%] using-discovery/slurmexamples reading sources... [ 66%] using-discovery/transferringdata reading sources... [ 71%] using-discovery/usingslurm reading sources... [ 76%] using-discovery/workingwithgpu reading sources... [ 80%] using-ood/fileexplore reading sources... [ 85%] using-ood/interactiveapps reading sources... [ 90%] using-ood/introduction reading sources... [ 95%] welcome/gettinghelp reading sources... [100%] welcome/welcome looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 4%] classroom/class_use writing output... [ 9%] get_started/connect writing output... [ 14%] get_started/get_access writing output... [ 19%] hardware/hardware_overview writing output... [ 23%] hardware/partitions writing output... [ 28%] index writing output... [ 33%] software/matlab writing output... [ 38%] software/modules writing output... [ 42%] software/software writing output... [ 47%] storage/discovery_storage writing output... [ 52%] storage/general_storage writing output... [ 57%] using-discovery/globus writing output... [ 61%] using-discovery/slurmexamples writing output... [ 66%] using-discovery/transferringdata writing output... [ 71%] using-discovery/usingslurm writing output... [ 76%] using-discovery/workingwithgpu writing output... [ 80%] using-ood/fileexplore writing output... [ 85%] using-ood/interactiveapps writing output... [ 90%] using-ood/introduction writing output... [ 95%] welcome/gettinghelp writing output... [100%] welcome/welcome generating indices... genindex writing additional pages... search copying images... [100%] images/discovery.png copying static files... WARNING: html_static_path entry '/home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/checkouts/latest/docs/source/_static' does not exist done copying readthedocs static files... done copying searchtools... done copying extra files... done dumping search index in English (code: en) ... done dumping object inventory... done build succeeded, 1 warning. The HTML pages are in _build/html. [rtd-command-info] start-time: 2020-07-22T21:01:01.270273Z, end-time: 2020-07-22T21:01:02.790349Z, duration: 1, exit-code: 0 python sphinx-build -T -b readthedocssinglehtmllocalmedia -d _build/doctrees-readthedocssinglehtmllocalmedia -D language=en . _build/localmedia Running Sphinx v1.8.5 loading translations [en]... done making output directory... building [mo]: targets for 0 po files that are out of date building [readthedocssinglehtmllocalmedia]: all documents updating environment: 21 added, 0 changed, 0 removed reading sources... [ 4%] classroom/class_use reading sources... [ 9%] get_started/connect reading sources... [ 14%] get_started/get_access reading sources... [ 19%] hardware/hardware_overview reading sources... [ 23%] hardware/partitions reading sources... [ 28%] index reading sources... [ 33%] software/matlab reading sources... [ 38%] software/modules reading sources... [ 42%] software/software reading sources... [ 47%] storage/discovery_storage reading sources... 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[100%] welcome/welcome looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done assembling single document... welcome/welcome welcome/gettinghelp get_started/get_access get_started/connect hardware/hardware_overview hardware/partitions software/modules software/software software/matlab using-discovery/usingslurm using-discovery/slurmexamples using-discovery/workingwithgpu using-discovery/transferringdata using-discovery/globus storage/discovery_storage storage/general_storage using-ood/introduction using-ood/fileexplore using-ood/interactiveapps classroom/class_use writing... done writing additional files... copying images... [100%] images/discovery.png copying static files... WARNING: html_static_path entry '/home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/checkouts/latest/docs/source/_static' does not exist done copying readthedocs static files... done copying extra files... done dumping object inventory... done build succeeded, 1 warning. The HTML page is in _build/localmedia. [rtd-command-info] start-time: 2020-07-22T21:01:02.963198Z, end-time: 2020-07-22T21:01:04.404774Z, duration: 1, exit-code: 0 python sphinx-build -b latex -D language=en -d _build/doctrees . _build/latex Running Sphinx v1.8.5 loading translations [en]... done making output directory... building [mo]: targets for 0 po files that are out of date building [latex]: all documents updating environment: 21 added, 0 changed, 0 removed reading sources... [ 4%] classroom/class_use reading sources... [ 9%] get_started/connect reading sources... [ 14%] get_started/get_access reading sources... [ 19%] hardware/hardware_overview reading sources... 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[100%] welcome/welcome looking for now-outdated files... none found pickling environment... done checking consistency... done processing NortheasternUniversityResearchComputing.tex...index welcome/welcome welcome/gettinghelp get_started/get_access get_started/connect hardware/hardware_overview hardware/partitions software/modules software/software software/matlab using-discovery/usingslurm using-discovery/slurmexamples using-discovery/workingwithgpu using-discovery/transferringdata using-discovery/globus storage/discovery_storage storage/general_storage using-ood/introduction using-ood/fileexplore using-ood/interactiveapps classroom/class_use resolving references... writing... done copying images... [100%] images/discovery.png copying TeX support files... done build succeeded. The LaTeX files are in _build/latex. Run 'make' in that directory to run these through (pdf)latex (use `make latexpdf' here to do that automatically). [rtd-command-info] start-time: 2020-07-22T21:01:05.884959Z, end-time: 2020-07-22T21:01:06.087439Z, duration: 0, exit-code: 0 cat latexmkrc $latex = 'latex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $pdflatex = 'pdflatex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $lualatex = 'lualatex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $xelatex = 'xelatex --no-pdf ' . $ENV{'LATEXOPTS'} . ' %O %S'; $makeindex = 'makeindex -s python.ist %O -o %D %S'; add_cus_dep( "glo", "gls", 0, "makeglo" ); sub makeglo { return system( "makeindex -s gglo.ist -o '$_[0].gls' '$_[0].glo'" ); } [rtd-command-info] start-time: 2020-07-22T21:01:06.451033Z, end-time: 2020-07-22T21:01:21.288906Z, duration: 14, exit-code: 0 latexmk -r latexmkrc -pdf -f -dvi- -ps- -jobname=northeastern-university-rc-public-documentation -interaction=nonstopmode Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 1, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 2, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 3, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 4, chunk 1. Subroutine makeglo redefined at (eval 11) line 7, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 1, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 2, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 3, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 4, chunk 1. Latexmk: This is Latexmk, John Collins, 1 January 2015, version: 4.41. File::Glob::glob() will disappear in perl 5.30. Use File::Glob::bsd_glob() instead. at /usr/bin/latexmk line 7482. 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(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/hypcap.sty) Writing index file northeastern-university-rc-public-documentation.idx (./northeastern-university-rc-public-documentation.aux) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1ptm.fd) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd)<><><><> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}] [2] [1] [2] Chapter 1. (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) [1] [2 <./discovery.p ng>] Chapter 2. [3] [4] Chapter 3. [5] [6] Chapter 4. [7] Underfull \hbox (badness 10000) in paragraph at lines 257--258 []\T1/ptm/m/n/10 Type \T1/pcr/m/n/10 ssh-copy-id -i ~/.ssh/id_rsa.pub @login.discovery.neu. [8] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) LaTeX Warning: Hyper reference `using-discovery/usingslurm:batch-jobs' on page 9 undefined on input line 334. [9] [10] Chapter 5. Underfull \hbox (badness 10000) in paragraph at lines 361--362 []|\T1/phv/m/n/10 Total Underfull \hbox (badness 6944) in paragraph at lines 363--365 []|\T1/phv/m/n/10 RAM per Underfull \hbox (badness 10000) in paragraph at lines 469--470 []|\T1/ptm/m/n/10 AMD EPYC Underfull \hbox (badness 10000) in paragraph at lines 478--479 []|\T1/ptm/m/n/10 Intel Gold [11] [12] Chapter 6. LaTeX Warning: Hyper reference `hardware/partitions:partition-access' on page 1 3 undefined on input line 501. 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[14] Chapter 7. Underfull \hbox (badness 10000) in paragraph at lines 722--723 []|\T1/pcr/m/n/10 module Underfull \hbox (badness 10000) in paragraph at lines 727--728 []|\T1/pcr/m/n/10 module Underfull \hbox (badness 10000) in paragraph at lines 732--733 []|\T1/pcr/m/n/10 module Underfull \hbox (badness 10000) in paragraph at lines 732--733 \T1/pcr/m/n/10 show Underfull \hbox (badness 10000) in paragraph at lines 732--733 \T1/pcr/m/n/10 Output written on northeastern-university-rc-public-documentation.pdf (59 pages , 24999292 bytes). Transcript written on northeastern-university-rc-public-documentation.log. Latexmk: Index file 'northeastern-university-rc-public-documentation.idx' was written Latexmk: Missing input file: 'northeastern-university-rc-public-documentation.ind' from line 'No file northeastern-university-rc-public-documentation.ind.' Latexmk: References changed. Latexmk: References changed. Latexmk: Log file says output to 'northeastern-university-rc-public-documentation.pdf' Latexmk: Log file says output to 'northeastern-university-rc-public-documentation.pdf' Rule 'makeindex northeastern-university-rc-public-documentation.idx': File changes, etc: Non-existent destination files: 'northeastern-university-rc-public-documentation.ind' ------------ Run number 1 of rule 'makeindex northeastern-university-rc-public-documentation.idx' ------------ ------------ Running 'makeindex -s python.ist -o "northeastern-university-rc-public-documentation.ind" "northeastern-university-rc-public-documentation.idx"' ------------ Latexmk: applying rule 'makeindex northeastern-university-rc-public-documentation.idx'... This is makeindex, version 2.15 [TeX Live 2017] (kpathsea + Thai support). Scanning style file ./python.ist.......done (7 attributes redefined, 0 ignored). Scanning input file northeastern-university-rc-public-documentation.idx...done (0 entries accepted, 0 rejected). 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[1] [2 <./discovery.png>] Chapter 2. [3] [4] Chapter 3. [5] [6] Chapter 4. [7] Underfull \hbox (badness 10000) in paragraph at lines 257--258 []\T1/ptm/m/n/10 Type \T1/pcr/m/n/10 ssh-copy-id -i ~/.ssh/id_rsa.pub @login.discovery.neu. [8] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [9] [10] Chapter 5. Underfull \hbox (badness 10000) in paragraph at lines 361--362 []|\T1/phv/m/n/10 Total Underfull \hbox (badness 6944) in paragraph at lines 363--365 []|\T1/phv/m/n/10 RAM per Underfull \hbox (badness 10000) in paragraph at lines 469--470 []|\T1/ptm/m/n/10 AMD EPYC Underfull \hbox (badness 10000) in paragraph at lines 478--479 []|\T1/ptm/m/n/10 Intel Gold [11] [12] Chapter 6. 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Underfull \hbox (badness 10000) in paragraph at lines 722--723 []|\T1/pcr/m/n/10 module Underfull \hbox (badness 10000) in paragraph at lines 727--728 []|\T1/pcr/m/n/10 module Underfull \hbox (badness 10000) in paragraph at lines 732--733 []|\T1/pcr/m/n/10 module Underfull \hbox (badness 10000) in paragraph at lines 732--733 \T1/pcr/m/n/10 show Underfull \hbox (badness 10000) in paragraph at lines 732--733 \T1/pcr/m/n/10 Output written on northeastern-university-rc-public-documentation.pdf (59 pages , 25009572 bytes). Transcript written on northeastern-university-rc-public-documentation.log. Latexmk: Index file 'northeastern-university-rc-public-documentation.idx' was written Latexmk: Log file says output to 'northeastern-university-rc-public-documentation.pdf' Latexmk: Log file says output to 'northeastern-university-rc-public-documentation.pdf' Rule 'pdflatex': File changes, etc: Changed files, or newly in use since previous run(s): 'northeastern-university-rc-public-documentation.out' 'northeastern-university-rc-public-documentation.toc' ------------ Run number 3 of rule 'pdflatex' ------------ ------------ Running 'pdflatex -interaction=nonstopmode -recorder --jobname="northeastern-university-rc-public-documentation" "NortheasternUniversityResearchComputing.tex"' ------------ Latexmk: applying rule 'pdflatex'... 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[1] [2 <./discovery.png>] Chapter 2. [3] [4] Chapter 3. [5] [6] Chapter 4. [7] Underfull \hbox (badness 10000) in paragraph at lines 257--258 []\T1/ptm/m/n/10 Type \T1/pcr/m/n/10 ssh-copy-id -i ~/.ssh/id_rsa.pub @login.discovery.neu. [8] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [9] [10] Chapter 5. Underfull \hbox (badness 10000) in paragraph at lines 361--362 []|\T1/phv/m/n/10 Total Underfull \hbox (badness 6944) in paragraph at lines 363--365 []|\T1/phv/m/n/10 RAM per Underfull \hbox (badness 10000) in paragraph at lines 469--470 []|\T1/ptm/m/n/10 AMD EPYC Underfull \hbox (badness 10000) in paragraph at lines 478--479 []|\T1/ptm/m/n/10 Intel Gold [11] [12] Chapter 6. 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