Read the Docs build information Build id: 364381 Project: tiledb-inc-tiledb Version: latest Commit: 53ab436169526513cba5949bb693863709d2e008 Date: 2020-07-10T15:46:12.603198Z State: finished Success: False [rtd-command-info] start-time: 2020-07-10T15:46:14.990618Z, end-time: 2020-07-10T15:46:18.606194Z, duration: 3, exit-code: 0 git clone --no-single-branch --depth 50 https://github.com/TileDB-Inc/TileDB.git . Cloning into '.'... [rtd-command-info] start-time: 2020-07-10T15:46:19.189421Z, end-time: 2020-07-10T15:46:19.603913Z, duration: 0, exit-code: 0 git checkout --force origin/dev Note: checking out 'origin/dev'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at 53ab4361 Bump AWSSDK to 1.8.6 [rtd-command-info] start-time: 2020-07-10T15:46:19.708281Z, end-time: 2020-07-10T15:46:19.906314Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2020-07-10T15:46:21.402748Z, end-time: 2020-07-10T15:48:06.646580Z, duration: 105, exit-code: 0 conda env create --quiet --name latest --file doc/source/conda-env.yml Warning: you have pip-installed dependencies in your environment file, but you do not list pip itself as one of your conda dependencies. Conda may not use the correct pip to install your packages, and they may end up in the wrong place. Please add an explicit pip dependency. I'm adding one for you, but still nagging you. Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done [rtd-command-info] start-time: 2020-07-10T15:48:06.850874Z, end-time: 2020-07-10T15:48:27.449148Z, duration: 20, exit-code: 0 conda install --yes --quiet --name latest mock pillow sphinx sphinx_rtd_theme Collecting package metadata (current_repodata.json): ...working... done Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve. Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source. Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ## Package Plan ## environment location: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest added / updated specs: - mock - pillow - sphinx - sphinx_rtd_theme The following packages will be downloaded: package | build ---------------------------|----------------- ca-certificates-2020.6.24 | 0 125 KB certifi-2020.6.20 | py36_0 156 KB freetype-2.10.2 | h5ab3b9f_0 608 KB jpeg-9b | h024ee3a_2 214 KB libpng-1.6.37 | hbc83047_0 278 KB libtiff-4.0.9 | he85c1e1_2 422 KB mock-4.0.2 | py_0 32 KB olefile-0.46 | py36_0 48 KB openssl-1.1.1g | h7b6447c_0 2.5 MB pillow-5.4.1 | py36h34e0f95_0 568 KB sphinx-3.1.2 | py_0 1.1 MB sphinx_rtd_theme-0.4.3 | py_0 4.4 MB ------------------------------------------------------------ Total: 10.5 MB The following NEW packages will be INSTALLED: freetype pkgs/main/linux-64::freetype-2.10.2-h5ab3b9f_0 jpeg pkgs/main/linux-64::jpeg-9b-h024ee3a_2 libpng pkgs/main/linux-64::libpng-1.6.37-hbc83047_0 libtiff pkgs/main/linux-64::libtiff-4.0.9-he85c1e1_2 mock pkgs/main/noarch::mock-4.0.2-py_0 olefile pkgs/main/linux-64::olefile-0.46-py36_0 pillow pkgs/main/linux-64::pillow-5.4.1-py36h34e0f95_0 sphinx_rtd_theme pkgs/main/noarch::sphinx_rtd_theme-0.4.3-py_0 The following packages will be UPDATED: ca-certificates conda-forge::ca-certificates-2020.6.2~ --> pkgs/main::ca-certificates-2020.6.24-0 The following packages will be SUPERSEDED by a higher-priority channel: certifi conda-forge::certifi-2020.6.20-py36h9~ --> pkgs/main::certifi-2020.6.20-py36_0 openssl conda-forge::openssl-1.1.1g-h516909a_0 --> pkgs/main::openssl-1.1.1g-h7b6447c_0 sphinx conda-forge --> pkgs/main Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done [rtd-command-info] start-time: 2020-07-10T15:48:27.673555Z, end-time: 2020-07-10T15:48:28.948779Z, duration: 1, exit-code: 0 /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/bin/python -m pip install -U --no-cache-dir recommonmark readthedocs-sphinx-ext Collecting recommonmark Downloading recommonmark-0.6.0-py2.py3-none-any.whl (10 kB) Collecting readthedocs-sphinx-ext Downloading readthedocs_sphinx_ext-2.1.0-py2.py3-none-any.whl (10 kB) Requirement already satisfied, skipping upgrade: docutils>=0.11 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages (from recommonmark) (0.16) Requirement already satisfied, skipping upgrade: sphinx>=1.3.1 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages (from recommonmark) (3.1.2) Collecting commonmark>=0.8.1 Downloading commonmark-0.9.1-py2.py3-none-any.whl (51 kB) Requirement already satisfied, skipping upgrade: requests in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages (from readthedocs-sphinx-ext) (2.24.0) Requirement already satisfied, skipping upgrade: Jinja2>=2.9 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages (from readthedocs-sphinx-ext) (2.11.2) Requirement already satisfied, skipping upgrade: sphinxcontrib-applehelp in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages (from sphinx>=1.3.1->recommonmark) (1.0.2) Requirement already satisfied, skipping upgrade: sphinxcontrib-serializinghtml in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages (from sphinx>=1.3.1->recommonmark) (1.1.4) Requirement already satisfied, skipping upgrade: packaging in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages (from sphinx>=1.3.1->recommonmark) (20.4) Requirement already satisfied, skipping upgrade: Pygments>=2.0 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages (from sphinx>=1.3.1->recommonmark) (2.6.1) Requirement already satisfied, skipping upgrade: babel>=1.3 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages (from sphinx>=1.3.1->recommonmark) (2.8.0) Requirement already satisfied, skipping upgrade: imagesize in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages (from sphinx>=1.3.1->recommonmark) (1.2.0) Requirement already satisfied, skipping upgrade: sphinxcontrib-qthelp in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages (from sphinx>=1.3.1->recommonmark) (1.0.3) Requirement already satisfied, skipping upgrade: sphinxcontrib-htmlhelp in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages (from sphinx>=1.3.1->recommonmark) (1.0.3) Requirement already satisfied, skipping upgrade: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages (from sphinx>=1.3.1->recommonmark) (49.1.0.post20200704) Requirement already satisfied, skipping upgrade: snowballstemmer>=1.1 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages (from sphinx>=1.3.1->recommonmark) (2.0.0) Requirement already satisfied, skipping upgrade: sphinxcontrib-devhelp in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages (from sphinx>=1.3.1->recommonmark) (1.0.2) Requirement already satisfied, skipping upgrade: sphinxcontrib-jsmath in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages (from sphinx>=1.3.1->recommonmark) (1.0.1) Requirement already satisfied, skipping upgrade: alabaster<0.8,>=0.7 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages (from sphinx>=1.3.1->recommonmark) (0.7.12) Requirement already satisfied, skipping upgrade: certifi>=2017.4.17 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages (from requests->readthedocs-sphinx-ext) (2020.6.20) Requirement already satisfied, skipping upgrade: urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages (from requests->readthedocs-sphinx-ext) (1.25.9) Requirement already satisfied, skipping upgrade: idna<3,>=2.5 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages (from requests->readthedocs-sphinx-ext) (2.10) Requirement already satisfied, skipping upgrade: chardet<4,>=3.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages (from requests->readthedocs-sphinx-ext) (3.0.4) Requirement already satisfied, skipping upgrade: MarkupSafe>=0.23 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages (from Jinja2>=2.9->readthedocs-sphinx-ext) (1.1.1) Requirement already satisfied, skipping upgrade: six in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages (from packaging->sphinx>=1.3.1->recommonmark) (1.15.0) Requirement already satisfied, skipping upgrade: pyparsing>=2.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages (from packaging->sphinx>=1.3.1->recommonmark) (2.4.7) Requirement already satisfied, skipping upgrade: pytz>=2015.7 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages (from babel>=1.3->sphinx>=1.3.1->recommonmark) (2020.1) Installing collected packages: commonmark, recommonmark, readthedocs-sphinx-ext Successfully installed commonmark-0.9.1 readthedocs-sphinx-ext-2.1.0 recommonmark-0.6.0 [rtd-command-info] start-time: 2020-07-10T15:48:31.500901Z, end-time: 2020-07-10T15:48:31.713559Z, duration: 0, exit-code: 0 cat doc/source/conf.py #!/usr/bin/env python3 # -*- coding: utf-8 -*- # # TileDB documentation build configuration file, created by # sphinx-quickstart on Mon Feb 5 10:08:37 2018. # # -- Imports configuration ------------------------------------------------- import os import subprocess import sys from os.path import abspath, join, dirname sys.path.insert(0, abspath(join(dirname(__file__)))) # -- ReadTheDocs configuration --------------------------------------------- # Special handling on ReadTheDocs builds. # Some of this code is from https://github.com/robotpy/robotpy-docs/blob/master/conf.py readthedocs = os.environ.get('READTHEDOCS', None) == 'True' rtd_version = os.environ.get('READTHEDOCS_VERSION', 'latest') rtd_version = rtd_version if rtd_version in ['stable', 'latest'] else 'stable' # On RTD, build the Doxygen XML files. if readthedocs: # Build docs subprocess.check_call(''' mkdir ../../build; cd ../../build; ../bootstrap; make doc; ''', shell=True) # -- General configuration ------------------------------------------------ # If your documentation needs a minimal Sphinx version, state it here. # # needs_sphinx = '1.0' # Add any Sphinx extension module names here, as strings. They can be # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom # ones. extensions = [ 'sphinx.ext.autodoc', 'sphinx.ext.intersphinx', 'sphinxcontrib.contentui', 'breathe' ] if readthedocs: # Mapping for linking between RTD subprojects. intersphinx_mapping = { 'tiledb': ('https://tiledb-inc-tiledb.readthedocs-hosted.com/en/%s/' % rtd_version, None), 'tiledb-py': ('https://tiledb-inc-tiledb.readthedocs-hosted.com/projects/python-api/en/%s/' % rtd_version, None) } # Add any paths that contain templates here, relative to this directory. templates_path = ['_templates'] # The suffix(es) of source filenames. source_suffix = '.rst' # The master toctree document. master_doc = 'index' # General information about the project. project = 'TileDB' copyright = '2020 TileDB, Inc' author = 'TileDB, Inc.' # The short X.Y version. version = '2.0' # The full version, including alpha/beta/rc tags. release = '2.0.0' # Breathe extension configuration. tiledb_dir = '../../' doxygen_xml_dir = tiledb_dir + 'build/xml/' breathe_projects = {'TileDB-C': doxygen_xml_dir, 'TileDB-C++': doxygen_xml_dir} breathe_default_project = 'TileDB-C' breathe_projects_source = { 'TileDB-C': (tiledb_dir + 'tiledb/sm/c_api/', ['tiledb.h']), 'TileDB-C++': (tiledb_dir + 'tiledb/sm/cpp_api/', ['tiledb']) } breathe_domain_by_file_pattern = { '*/c_api/tiledb.h': 'c', '*/cpp_api/tiledb': 'cpp' } # Allow parsing TILEDB_DEPRECATED in C++ function signatures. cpp_id_attributes = ['TILEDB_DEPRECATED'] # The language for content autogenerated by Sphinx. Refer to documentation # for a list of supported languages. # # This is also used if you do content translation via gettext catalogs. # Usually you set "language" from the command line for these cases. language = None # List of patterns, relative to source directory, that match files and # directories to ignore when looking for source files. # This patterns also effect to html_static_path and html_extra_path exclude_patterns = [] # The name of the Pygments (syntax highlighting) style to use. pygments_style = 'friendly' # If true, `todo` and `todoList` produce output, else they produce nothing. todo_include_todos = False # -- Options for HTML output ---------------------------------------------- html_static_path = ['_static'] html_logo = '_static/tiledb-logo_color_no_margin_@4x.png' html_favicon = '_static/favicon.ico' if readthedocs: html_theme = 'default' else: import sphinx_rtd_theme html_theme = 'sphinx_rtd_theme' html_theme_path = [sphinx_rtd_theme.get_html_theme_path()] # -- Options for HTMLHelp output ------------------------------------------ # Output file base name for HTML help builder. htmlhelp_basename = 'TileDBdoc' # -- Options for LaTeX output --------------------------------------------- latex_elements = { # The paper size ('letterpaper' or 'a4paper'). # # 'papersize': 'letterpaper', # The font size ('10pt', '11pt' or '12pt'). # # 'pointsize': '10pt', # Additional stuff for the LaTeX preamble. # # 'preamble': '', # Latex figure (float) alignment # # 'figure_align': 'htbp', } # Grouping the document tree into LaTeX files. List of tuples # (source start file, target name, title, # author, documentclass [howto, manual, or own class]). latex_documents = [ (master_doc, 'TileDB.tex', 'TileDB Documentation', 'TileDB, Inc.', 'manual'), ] # -- Options for manual page output --------------------------------------- # One entry per manual page. List of tuples # (source start file, name, description, authors, manual section). man_pages = [ (master_doc, 'tiledb', 'TileDB Documentation', [author], 1) ] # -- Options for Texinfo output ------------------------------------------- # Grouping the document tree into Texinfo files. List of tuples # (source start file, target name, title, author, # dir menu entry, description, category) texinfo_documents = [ (master_doc, 'TileDB', 'TileDB Documentation', author, 'TileDB', 'One line description of project.', 'Miscellaneous'), ] # -- Custom Document processing ---------------------------------------------- # Generate the sidebar automatically so that it is identical across all subprojects. # This (and gensidebar.py) from https://github.com/robotpy/robotpy-docs import gensidebar gensidebar.generate_sidebar({'on_rtd': readthedocs, 'rtd_version': rtd_version}, 'tiledb') # Replace C/C++ source examples path def replaceText(app, docname, source): result = source[0] for key in app.config.text_replacements: result = result.replace(key, app.config.text_replacements[key]) source[0] = result text_replacements = { "{source_examples_path}" : "../../examples", "{tiledb_src_root_url}" : "https://github.com/TileDB-Inc/TileDB/blob/dev", "{tiledb_py_src_root_url}" : "https://github.com/TileDB-Inc/TileDB-Py/blob/dev", "{tiledb_R_src_root_url}" : "https://github.com/TileDB-Inc/TileDB-R/blob/master", "{tiledb_go_src_root_url}" : "https://github.com/TileDB-Inc/TileDB-Go/blob/master" } # -- Custom setup ----------------------------------------------------------- def add_custom_js(app): app.add_javascript('custom.js') def setup(app): app.add_config_value('text_replacements', {}, True) app.connect('source-read', replaceText) app.add_stylesheet('custom.css') # Use this event so that our custom JS gets included *after* the ContentUI # extension adds its JS, otherwise we can't override its behavior. app.connect('builder-inited', add_custom_js) ########################################################################### # auto-created readthedocs.org specific configuration # ########################################################################### # # The following code was added during an automated build on readthedocs.org # It is auto created and injected for every build. The result is based on the # conf.py.tmpl file found in the readthedocs.org codebase: # https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl # import importlib import sys import os.path from six import string_types from sphinx import version_info # Get suffix for proper linking to GitHub # This is deprecated in Sphinx 1.3+, # as each page can have its own suffix if globals().get('source_suffix', False): if isinstance(source_suffix, string_types): SUFFIX = source_suffix elif isinstance(source_suffix, (list, tuple)): # Sphinx >= 1.3 supports list/tuple to define multiple suffixes SUFFIX = source_suffix[0] elif isinstance(source_suffix, dict): # Sphinx >= 1.8 supports a mapping dictionary for multiple suffixes SUFFIX = list(source_suffix.keys())[0] # make a ``list()`` for py2/py3 compatibility else: # default to .rst SUFFIX = '.rst' else: SUFFIX = '.rst' # Add RTD Static Path. Add to the end because it overwrites previous files. if not 'html_static_path' in globals(): html_static_path = [] if os.path.exists('_static'): html_static_path.append('_static') # Add RTD Theme only if they aren't overriding it already using_rtd_theme = ( ( 'html_theme' in globals() and html_theme in ['default'] and # Allow people to bail with a hack of having an html_style 'html_style' not in globals() ) or 'html_theme' not in globals() ) if using_rtd_theme: theme = importlib.import_module('sphinx_rtd_theme') html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} if 'html_theme_path' in globals(): html_theme_path.append(theme.get_html_theme_path()) else: html_theme_path = [theme.get_html_theme_path()] if globals().get('websupport2_base_url', False): websupport2_base_url = 'https://readthedocs.com/websupport' websupport2_static_url = 'https://assets.readthedocs.com/' #Add project information to the template context. context = { 'using_theme': using_rtd_theme, 'html_theme': html_theme, 'current_version': "latest", 'version_slug': "latest", 'MEDIA_URL': "https://media.readthedocs.com/media/", 'STATIC_URL': "https://assets.readthedocs.com/", 'PRODUCTION_DOMAIN': "readthedocs.com", 'versions': [ ("latest", "/en/latest/"), ("stable", "/en/stable/"), ("1.6.3", "/en/1.6.3/"), ("1.5.1", "/en/1.5.1/"), ("1.5.0", "/en/1.5.0/"), ("1.4.0", "/en/1.4.0/"), ("1.3.2", "/en/1.3.2/"), ("1.3.1", "/en/1.3.1/"), ("1.3.0", "/en/1.3.0/"), ], 'downloads': [ ], 'subprojects': [ ("tiledb-inc-tiledb-py", "https://tiledb-inc-tiledb.readthedocs-hosted.com/projects/tiledb-py/en/stable/"), ], 'slug': 'tiledb-inc-tiledb', 'name': u'TileDB', 'rtd_language': u'en', 'programming_language': u'words', 'canonical_url': 'https://tiledb-inc-tiledb.readthedocs-hosted.com/en/stable/', 'analytics_code': '', 'single_version': False, 'conf_py_path': '/doc/source/', 'api_host': 'https://readthedocs.com', 'github_user': 'TileDB-Inc', 'proxied_api_host': '/_', 'github_repo': 'TileDB', 'github_version': 'dev', 'display_github': True, 'bitbucket_user': 'None', 'bitbucket_repo': 'None', 'bitbucket_version': 'dev', 'display_bitbucket': False, 'gitlab_user': 'None', 'gitlab_repo': 'None', 'gitlab_version': 'dev', 'display_gitlab': False, 'READTHEDOCS': True, 'using_theme': (html_theme == "default"), 'new_theme': (html_theme == "sphinx_rtd_theme"), 'source_suffix': SUFFIX, 'ad_free': False, 'docsearch_disabled': False, 'user_analytics_code': '', 'global_analytics_code': 'UA-17997319-2', 'commit': '53ab4361', } if 'html_context' in globals(): html_context.update(context) else: html_context = context # Add custom RTD extension if 'extensions' in globals(): # Insert at the beginning because it can interfere # with other extensions. # See https://github.com/rtfd/readthedocs.org/pull/4054 extensions.insert(0, "readthedocs_ext.readthedocs") else: extensions = ["readthedocs_ext.readthedocs"] # Add External version warning banner to the external version documentation if 'branch' == 'external': extensions.insert(1, "readthedocs_ext.external_version_warning") project_language = 'en' # User's Sphinx configurations language_user = globals().get('language', None) latex_engine_user = globals().get('latex_engine', None) latex_elements_user = globals().get('latex_elements', None) # Remove this once xindy gets installed in Docker image and XINDYOPS # env variable is supported # https://github.com/rtfd/readthedocs-docker-images/pull/98 latex_use_xindy = False chinese = any([ language_user in ('zh_CN', 'zh_TW'), project_language in ('zh_CN', 'zh_TW'), ]) japanese = any([ language_user == 'ja', project_language == 'ja', ]) if chinese: latex_engine = latex_engine_user or 'xelatex' latex_elements_rtd = { 'preamble': '\\usepackage[UTF8]{ctex}\n', } latex_elements = latex_elements_user or latex_elements_rtd elif japanese: latex_engine = latex_engine_user or 'platex' [rtd-command-info] start-time: 2020-07-10T15:48:31.927416Z, end-time: 2020-07-10T15:48:45.207329Z, duration: 13, exit-code: 2 python /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/bin/sphinx-build -T -E -b readthedocs -d _build/doctrees-readthedocs -D language=en . _build/html Running Sphinx v3.1.2 -- The C compiler identification is GNU 7.4.0 -- The CXX compiler identification is GNU 7.4.0 -- Check for working C compiler: /usr/bin/gcc -- Check for working C compiler: /usr/bin/gcc - works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/g++ -- Check for working CXX compiler: /usr/bin/g++ - works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Starting TileDB superbuild. -- Found Bzip2: /usr/lib/x86_64-linux-gnu/libbz2.so -- Found LZ4: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/liblz4.so -- Could NOT find Spdlog (missing: SPDLOG_INCLUDE_DIR) -- Adding Spdlog as an external project -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.11") -- Found Zlib: /usr/lib/x86_64-linux-gnu/libz.so -- Found Zstd: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/libzstd.so -- Found OpenSSL: /usr/lib/x86_64-linux-gnu/libcrypto.so (found version "1.0.2n") -- Found OpenSSL: /usr/lib/x86_64-linux-gnu/libssl.so -- OpenSSL crypto: /usr/lib/x86_64-linux-gnu/libcrypto.so -- root: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/checkouts/latest/build/externals/install;/usr/local/opt/openssl -- Could NOT find TBB (missing: TBB_DIR) -- Could NOT find TBB (missing: TBB_LIBRARIES TBB_INCLUDE_DIR) -- Adding TBB as an external project -- searching for catch in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/checkouts/latest/build/externals/src -- Could NOT find Catch2 (missing: CATCH_INCLUDE_DIR) -- Adding Catch as an external project -- Not found clang-tidy -- Not found clang-format -- Found Doxygen: /usr/bin/doxygen (found version "1.8.13") found components: doxygen dot -- Install prefix is /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/checkouts/latest/dist -- Configuring done -- Generating done -- Build files have been written to: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/checkouts/latest/build bootstrap success. Run "make" to build, "make check" to test, or "make -C tiledb install" to install. Scanning dependencies of target doc [ 50%] Preparing for Doxygen documentation [100%] Generating API documentation with Doxygen [100%] Built target doc loading translations [en]... done Traceback (most recent call last): File "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages/sphinx/cmd/build.py", line 279, in build_main args.tags, args.verbosity, args.jobs, args.keep_going) File "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages/sphinx/application.py", line 244, in __init__ self.setup_extension(extension) File "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages/sphinx/application.py", line 398, in setup_extension self.registry.load_extension(self, extname) File "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages/sphinx/registry.py", line 419, in load_extension metadata = setup(app) File "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages/breathe/__init__.py", line 13, in setup from . import directives File "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages/breathe/directives.py", line 4, in from .renderer import DoxygenToRstRendererFactory File "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages/breathe/renderer/__init__.py", line 4, in from ..node_factory import create_node_factory File "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages/breathe/node_factory.py", line 5, in import sphinx.ext.mathbase ModuleNotFoundError: No module named 'sphinx.ext.mathbase' Exception occurred: File "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages/breathe/node_factory.py", line 5, in import sphinx.ext.mathbase ModuleNotFoundError: No module named 'sphinx.ext.mathbase' The full traceback has been saved in /tmp/sphinx-err-kl2jnzpl.log, if you want to report the issue to the developers. Please also report this if it was a user error, so that a better error message can be provided next time. A bug report can be filed in the tracker at . Thanks!