Read the Docs build information Build id: 350874 Project: mdolab-adflow Version: latest Commit: 5b9645b64ee94cb8ae404ea89d46da9b7b2b51a8 Date: 2020-06-25T20:54:59.380693Z State: finished Success: True [rtd-command-info] start-time: 2020-06-25T20:55:01.614001Z, end-time: 2020-06-25T20:55:04.576174Z, duration: 2, exit-code: 0 git clone --no-single-branch --depth 50 https://github.com/mdolab/adflow.git . Cloning into '.'... [rtd-command-info] start-time: 2020-06-25T20:55:06.137857Z, end-time: 2020-06-25T20:55:06.466235Z, duration: 0, exit-code: 0 git checkout --force origin/master Note: checking out 'origin/master'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at 5b9645b Changed travis to run on 2 procs (#62) [rtd-command-info] start-time: 2020-06-25T20:55:06.586671Z, end-time: 2020-06-25T20:55:06.787010Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2020-06-25T20:55:08.554697Z, end-time: 2020-06-25T20:55:12.443775Z, duration: 3, exit-code: 0 python3.7 -mvirtualenv Using base prefix '/home/docs/.pyenv/versions/3.7.3' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-adflow/envs/latest/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-adflow/envs/latest/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2020-06-25T20:55:12.559452Z, end-time: 2020-06-25T20:55:13.359244Z, duration: 0, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip Requirement already up-to-date: pip in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-adflow/envs/latest/lib/python3.7/site-packages (20.1.1) [rtd-command-info] start-time: 2020-06-25T20:55:13.479798Z, end-time: 2020-06-25T20:55:22.919992Z, duration: 9, exit-code: 0 python -m pip install --upgrade --no-cache-dir Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1 Collecting Pygments==2.3.1 Downloading Pygments-2.3.1-py2.py3-none-any.whl (849 kB) Collecting setuptools==41.0.1 Downloading setuptools-41.0.1-py2.py3-none-any.whl (575 kB) Collecting docutils==0.14 Downloading docutils-0.14-py3-none-any.whl (543 kB) Collecting mock==1.0.1 Downloading mock-1.0.1.tar.gz (818 kB) Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.5-py2.py3-none-any.whl (3.1 MB) Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) Collecting readthedocs-sphinx-ext<1.1 Downloading readthedocs_sphinx_ext-1.0.4-py2.py3-none-any.whl (28 kB) Collecting future Downloading future-0.18.2.tar.gz (829 kB) Collecting Jinja2>=2.3 Downloading Jinja2-2.11.2-py2.py3-none-any.whl (125 kB) Collecting imagesize Downloading imagesize-1.2.0-py2.py3-none-any.whl (4.8 kB) Collecting babel!=2.0,>=1.3 Downloading Babel-2.8.0-py2.py3-none-any.whl (8.6 MB) Collecting packaging Downloading packaging-20.4-py2.py3-none-any.whl (37 kB) Collecting sphinxcontrib-websupport Downloading sphinxcontrib_websupport-1.2.2-py2.py3-none-any.whl (39 kB) Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.0.0-py2.py3-none-any.whl (97 kB) Collecting requests>=2.0.0 Downloading requests-2.24.0-py2.py3-none-any.whl (61 kB) Collecting six>=1.5 Downloading six-1.15.0-py2.py3-none-any.whl (10 kB) Collecting MarkupSafe>=0.23 Downloading MarkupSafe-1.1.1-cp37-cp37m-manylinux1_x86_64.whl (27 kB) Collecting pytz>=2015.7 Downloading pytz-2020.1-py2.py3-none-any.whl (510 kB) Collecting pyparsing>=2.0.2 Downloading pyparsing-2.4.7-py2.py3-none-any.whl (67 kB) Collecting chardet<4,>=3.0.2 Downloading chardet-3.0.4-py2.py3-none-any.whl (133 kB) Collecting idna<3,>=2.5 Downloading idna-2.9-py2.py3-none-any.whl (58 kB) Collecting certifi>=2017.4.17 Downloading certifi-2020.6.20-py2.py3-none-any.whl (156 kB) Collecting urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 Downloading urllib3-1.25.9-py2.py3-none-any.whl (126 kB) Building wheels for collected packages: mock, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23754 sha256=b2c349cfce07c887584ebb508a1c11f2d775713246cde37c317011d8379703db Stored in directory: /tmp/pip-ephem-wheel-cache-x7pyrtal/wheels/16/03/37/f0a64ab894c9102906f192db1a4071b7592292ad661563c69b Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491058 sha256=e54a652bed284e80c5db856ecd940bec5bbb93d2c707d9b2fe726097060c821d Stored in directory: /tmp/pip-ephem-wheel-cache-x7pyrtal/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0 Successfully built mock future Installing collected packages: Pygments, setuptools, docutils, mock, pillow, alabaster, future, commonmark, MarkupSafe, Jinja2, imagesize, pytz, babel, pyparsing, six, packaging, sphinxcontrib-websupport, snowballstemmer, chardet, idna, certifi, urllib3, requests, sphinx, recommonmark, sphinx-rtd-theme, readthedocs-sphinx-ext Attempting uninstall: setuptools Found existing installation: setuptools 47.3.1 Uninstalling setuptools-47.3.1: Successfully uninstalled setuptools-47.3.1 Successfully installed Jinja2-2.11.2 MarkupSafe-1.1.1 Pygments-2.3.1 alabaster-0.7.12 babel-2.8.0 certifi-2020.6.20 chardet-3.0.4 commonmark-0.8.1 docutils-0.14 future-0.18.2 idna-2.9 imagesize-1.2.0 mock-1.0.1 packaging-20.4 pillow-5.4.1 pyparsing-2.4.7 pytz-2020.1 readthedocs-sphinx-ext-1.0.4 recommonmark-0.5.0 requests-2.24.0 setuptools-41.0.1 six-1.15.0 snowballstemmer-2.0.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-websupport-1.2.2 urllib3-1.25.9 [rtd-command-info] start-time: 2020-06-25T20:55:23.197261Z, end-time: 2020-06-25T20:55:24.179226Z, duration: 0, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r doc/requirements.txt Collecting numpydoc Downloading numpydoc-1.0.0-py3-none-any.whl (47 kB) Requirement already satisfied: Jinja2>=2.3 in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-adflow/envs/latest/lib/python3.7/site-packages (from numpydoc->-r doc/requirements.txt (line 1)) (2.11.2) Requirement already satisfied: sphinx>=1.6.5 in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-adflow/envs/latest/lib/python3.7/site-packages (from numpydoc->-r doc/requirements.txt (line 1)) (1.8.5) Requirement already satisfied: MarkupSafe>=0.23 in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-adflow/envs/latest/lib/python3.7/site-packages (from Jinja2>=2.3->numpydoc->-r doc/requirements.txt (line 1)) (1.1.1) Requirement already satisfied: snowballstemmer>=1.1 in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-adflow/envs/latest/lib/python3.7/site-packages (from sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (2.0.0) Requirement already satisfied: babel!=2.0,>=1.3 in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-adflow/envs/latest/lib/python3.7/site-packages (from sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (2.8.0) Requirement already satisfied: requests>=2.0.0 in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-adflow/envs/latest/lib/python3.7/site-packages (from sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (2.24.0) Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-adflow/envs/latest/lib/python3.7/site-packages (from sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (41.0.1) Requirement already satisfied: Pygments>=2.0 in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-adflow/envs/latest/lib/python3.7/site-packages (from sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (2.3.1) Requirement already satisfied: imagesize in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-adflow/envs/latest/lib/python3.7/site-packages (from sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (1.2.0) Requirement already satisfied: six>=1.5 in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-adflow/envs/latest/lib/python3.7/site-packages (from sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (1.15.0) Requirement already satisfied: packaging in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-adflow/envs/latest/lib/python3.7/site-packages (from sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (20.4) Requirement already satisfied: sphinxcontrib-websupport in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-adflow/envs/latest/lib/python3.7/site-packages (from sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (1.2.2) Requirement already satisfied: docutils>=0.11 in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-adflow/envs/latest/lib/python3.7/site-packages (from sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (0.14) Requirement already satisfied: alabaster<0.8,>=0.7 in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-adflow/envs/latest/lib/python3.7/site-packages (from sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (0.7.12) Requirement already satisfied: pytz>=2015.7 in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-adflow/envs/latest/lib/python3.7/site-packages (from babel!=2.0,>=1.3->sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (2020.1) Requirement already satisfied: chardet<4,>=3.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-adflow/envs/latest/lib/python3.7/site-packages (from requests>=2.0.0->sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (3.0.4) Requirement already satisfied: urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-adflow/envs/latest/lib/python3.7/site-packages (from requests>=2.0.0->sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (1.25.9) Requirement already satisfied: certifi>=2017.4.17 in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-adflow/envs/latest/lib/python3.7/site-packages (from requests>=2.0.0->sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (2020.6.20) Requirement already satisfied: idna<3,>=2.5 in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-adflow/envs/latest/lib/python3.7/site-packages (from requests>=2.0.0->sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (2.9) Requirement already satisfied: pyparsing>=2.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-adflow/envs/latest/lib/python3.7/site-packages (from packaging->sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (2.4.7) Installing collected packages: numpydoc Successfully installed numpydoc-1.0.0 [rtd-command-info] start-time: 2020-06-25T20:55:25.874604Z, end-time: 2020-06-25T20:55:26.091129Z, duration: 0, exit-code: 0 cat doc/conf.py # Configuration file for the Sphinx documentation builder. # # This file only contains a selection of the most common options. For a full # list see the documentation: # https://www.sphinx-doc.org/en/master/usage/configuration.html # -- Path setup -------------------------------------------------------------- # If extensions (or modules to document with autodoc) are in another directory, # add these directories to sys.path here. If the directory is relative to the # documentation root, use os.path.abspath to make it absolute, like shown here. import os import sys sys.path.insert(0, os.path.abspath("../")) # -- Project information ----------------------------------------------------- project = 'ADflow' copyright = '2020, MDO Lab' # -- General configuration --------------------------------------------------- # Add any Sphinx extension module names here, as strings. They can be # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom # ones. extensions = ['sphinx.ext.viewcode', 'sphinx.ext.imgmath', 'sphinx.ext.autodoc', 'numpydoc'] # mock import for autodoc autodoc_mock_imports = ['numpy', 'mpi4py', 'petsc4py', 'baseclasses'] numpydoc_show_class_members = False # The master toctree document. master_doc = 'index' # Add any paths that contain templates here, relative to this directory. templates_path = ['_templates'] # List of patterns, relative to source directory, that match files and # directories to ignore when looking for source files. # This pattern also affects html_static_path and html_extra_path. exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store'] # -- Options for HTML output ------------------------------------------------- # The theme to use for HTML and HTML Help pages. See the documentation for # a list of builtin themes. html_theme = 'sphinx_rtd_theme' # Add any paths that contain custom static files (such as style sheets) here, # relative to this directory. They are copied after the builtin static files, # so a file named "default.css" will overwrite the builtin "default.css". html_static_path = ['_static'] html_context = { 'css_files': [ '_static/theme_overrides.css', # override wide tables in RTD theme ], } ########################################################################### # auto-created readthedocs.org specific configuration # ########################################################################### # # The following code was added during an automated build on readthedocs.org # It is auto created and injected for every build. The result is based on the # conf.py.tmpl file found in the readthedocs.org codebase: # https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl # import importlib import sys import os.path from six import string_types from sphinx import version_info # Get suffix for proper linking to GitHub # This is deprecated in Sphinx 1.3+, # as each page can have its own suffix if globals().get('source_suffix', False): if isinstance(source_suffix, string_types): SUFFIX = source_suffix elif isinstance(source_suffix, (list, tuple)): # Sphinx >= 1.3 supports list/tuple to define multiple suffixes SUFFIX = source_suffix[0] elif isinstance(source_suffix, dict): # Sphinx >= 1.8 supports a mapping dictionary for multiple suffixes SUFFIX = list(source_suffix.keys())[0] # make a ``list()`` for py2/py3 compatibility else: # default to .rst SUFFIX = '.rst' else: SUFFIX = '.rst' # Add RTD Static Path. Add to the end because it overwrites previous files. if not 'html_static_path' in globals(): html_static_path = [] if os.path.exists('_static'): html_static_path.append('_static') # Add RTD Theme only if they aren't overriding it already using_rtd_theme = ( ( 'html_theme' in globals() and html_theme in ['default'] and # Allow people to bail with a hack of having an html_style 'html_style' not in globals() ) or 'html_theme' not in globals() ) if using_rtd_theme: theme = importlib.import_module('sphinx_rtd_theme') html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} if 'html_theme_path' in globals(): html_theme_path.append(theme.get_html_theme_path()) else: html_theme_path = [theme.get_html_theme_path()] if globals().get('websupport2_base_url', False): websupport2_base_url = 'https://readthedocs.com/websupport' websupport2_static_url = 'https://assets.readthedocs.com/' #Add project information to the template context. context = { 'using_theme': using_rtd_theme, 'html_theme': html_theme, 'current_version': "latest", 'version_slug': "latest", 'MEDIA_URL': "https://media.readthedocs.com/media/", 'STATIC_URL': "https://assets.readthedocs.com/", 'PRODUCTION_DOMAIN': "readthedocs.com", 'versions': [ ("latest", "/en/latest/"), ("stable", "/en/stable/"), ], 'downloads': [ ("pdf", "//mdolab-adflow.readthedocs-hosted.com/_/downloads/en/latest/pdf/"), ("html", "//mdolab-adflow.readthedocs-hosted.com/_/downloads/en/latest/htmlzip/"), ("epub", "//mdolab-adflow.readthedocs-hosted.com/_/downloads/en/latest/epub/"), ], 'subprojects': [ ], 'slug': 'mdolab-adflow', 'name': u'adflow', 'rtd_language': u'en', 'programming_language': u'words', 'canonical_url': 'https://mdolab-adflow.readthedocs-hosted.com/en/latest/', 'analytics_code': 'None', 'single_version': False, 'conf_py_path': '/doc/', 'api_host': 'https://readthedocs.com', 'github_user': 'mdolab', 'proxied_api_host': '/_', 'github_repo': 'adflow', 'github_version': 'master', 'display_github': True, 'bitbucket_user': 'None', 'bitbucket_repo': 'None', 'bitbucket_version': 'master', 'display_bitbucket': False, 'gitlab_user': 'None', 'gitlab_repo': 'None', 'gitlab_version': 'master', 'display_gitlab': False, 'READTHEDOCS': True, 'using_theme': (html_theme == "default"), 'new_theme': (html_theme == "sphinx_rtd_theme"), 'source_suffix': SUFFIX, 'ad_free': False, 'docsearch_disabled': False, 'user_analytics_code': '', 'global_analytics_code': 'UA-17997319-2', 'commit': '5b9645b6', } if 'html_context' in globals(): html_context.update(context) else: html_context = context # Add custom RTD extension if 'extensions' in globals(): # Insert at the beginning because it can interfere # with other extensions. # See https://github.com/rtfd/readthedocs.org/pull/4054 extensions.insert(0, "readthedocs_ext.readthedocs") else: extensions = ["readthedocs_ext.readthedocs"] # Add External version warning banner to the external version documentation if 'branch' == 'external': extensions.insert(1, "readthedocs_ext.external_version_warning") project_language = 'en' # User's Sphinx configurations language_user = globals().get('language', None) latex_engine_user = globals().get('latex_engine', None) latex_elements_user = globals().get('latex_elements', None) # Remove this once xindy gets installed in Docker image and XINDYOPS # env variable is supported # https://github.com/rtfd/readthedocs-docker-images/pull/98 latex_use_xindy = False chinese = any([ language_user in ('zh_CN', 'zh_TW'), project_language in ('zh_CN', 'zh_TW'), ]) japanese = any([ language_user == 'ja', project_language == 'ja', ]) if chinese: latex_engine = latex_engine_user or 'xelatex' latex_elements_rtd = { 'preamble': '\\usepackage[UTF8]{ctex}\n', } latex_elements = latex_elements_user or latex_elements_rtd elif japanese: latex_engine = latex_engine_user or 'platex' [rtd-command-info] start-time: 2020-06-25T20:55:26.226882Z, end-time: 2020-06-25T20:55:30.372663Z, duration: 4, exit-code: 0 python sphinx-build -T -E -b readthedocs -d _build/doctrees-readthedocs -D language=en . _build/html Running Sphinx v1.8.5 loading translations [en]... done making output directory... building [mo]: targets for 0 po files that are out of date building [readthedocs]: targets for 11 source files that are out of date updating environment: 11 added, 0 changed, 0 removed reading sources... [ 9%] adjoint reading sources... [ 18%] autodiff reading sources... [ 27%] devguide reading sources... [ 36%] index reading sources... [ 45%] install reading sources... [ 54%] introduction reading sources... [ 63%] options reading sources... [ 72%] performance reading sources... [ 81%] pyADflow reading sources... [ 90%] solvers reading sources... [100%] tutorial looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 9%] adjoint writing output... [ 18%] autodiff writing output... [ 27%] devguide writing output... [ 36%] index writing output... [ 45%] install writing output... [ 54%] introduction writing output... [ 63%] options writing output... [ 72%] performance writing output... [ 81%] pyADflow writing output... [ 90%] solvers writing output... [100%] tutorial generating indices... genindex highlighting module code... [100%] adflow.pyADflow writing additional pages... search copying static files... done copying readthedocs static files... done copying searchtools... done copying extra files... done dumping search index in English (code: en) ... done dumping object inventory... done build succeeded. The HTML pages are in _build/html. [rtd-command-info] start-time: 2020-06-25T20:55:30.502441Z, end-time: 2020-06-25T20:55:34.012628Z, duration: 3, exit-code: 0 python sphinx-build -T -b readthedocssinglehtmllocalmedia -d _build/doctrees-readthedocssinglehtmllocalmedia -D language=en . _build/localmedia Running Sphinx v1.8.5 loading translations [en]... done making output directory... building [mo]: targets for 0 po files that are out of date building [readthedocssinglehtmllocalmedia]: all documents updating environment: 11 added, 0 changed, 0 removed reading sources... [ 9%] adjoint reading sources... [ 18%] autodiff reading sources... [ 27%] devguide reading sources... [ 36%] index reading sources... [ 45%] install reading sources... [ 54%] introduction reading sources... [ 63%] options reading sources... [ 72%] performance reading sources... [ 81%] pyADflow reading sources... [ 90%] solvers reading sources... [100%] tutorial looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done assembling single document... introduction install tutorial options pyADflow solvers performance devguide adjoint autodiff writing... done writing additional files... copying static files... done copying readthedocs static files... done copying extra files... done dumping object inventory... done build succeeded. The HTML page is in _build/localmedia. [rtd-command-info] start-time: 2020-06-25T20:55:34.200491Z, end-time: 2020-06-25T20:55:36.983144Z, duration: 2, exit-code: 0 python sphinx-build -b latex -D language=en -d _build/doctrees . _build/latex Running Sphinx v1.8.5 loading translations [en]... done making output directory... building [mo]: targets for 0 po files that are out of date building [latex]: all documents updating environment: 11 added, 0 changed, 0 removed reading sources... [ 9%] adjoint reading sources... [ 18%] autodiff reading sources... [ 27%] devguide reading sources... [ 36%] index reading sources... [ 45%] install reading sources... [ 54%] introduction reading sources... [ 63%] options reading sources... [ 72%] performance reading sources... [ 81%] pyADflow reading sources... [ 90%] solvers reading sources... [100%] tutorial looking for now-outdated files... none found pickling environment... done checking consistency... done processing ADflow.tex...index introduction install tutorial options pyADflow solvers performance devguide adjoint autodiff resolving references... writing... done copying TeX support files... done build succeeded. The LaTeX files are in _build/latex. Run 'make' in that directory to run these through (pdf)latex (use `make latexpdf' here to do that automatically). [rtd-command-info] start-time: 2020-06-25T20:55:37.330863Z, end-time: 2020-06-25T20:55:37.533141Z, duration: 0, exit-code: 0 cat latexmkrc $latex = 'latex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $pdflatex = 'pdflatex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $lualatex = 'lualatex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $xelatex = 'xelatex --no-pdf ' . $ENV{'LATEXOPTS'} . ' %O %S'; $makeindex = 'makeindex -s python.ist %O -o %D %S'; add_cus_dep( "glo", "gls", 0, "makeglo" ); sub makeglo { return system( "makeindex -s gglo.ist -o '$_[0].gls' '$_[0].glo'" ); } [rtd-command-info] start-time: 2020-06-25T20:55:37.844332Z, end-time: 2020-06-25T20:55:39.967164Z, duration: 2, exit-code: 0 latexmk -r latexmkrc -pdf -f -dvi- -ps- -jobname=mdolab-adflow -interaction=nonstopmode Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 1, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 2, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 3, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 4, chunk 1. Subroutine makeglo redefined at (eval 11) line 7, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 1, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 2, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 3, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 4, chunk 1. Latexmk: This is Latexmk, John Collins, 1 January 2015, version: 4.41. File::Glob::glob() will disappear in perl 5.30. Use File::Glob::bsd_glob() instead. at /usr/bin/latexmk line 7482. Rule 'pdflatex': Rules & subrules not known to be previously run: pdflatex Rule 'pdflatex': The following rules & subrules became out-of-date: 'pdflatex' ------------ Run number 1 of rule 'pdflatex' ------------ ------------ Running 'pdflatex -interaction=nonstopmode -recorder --jobname="mdolab-adflow" "ADflow.tex"' ------------ Latexmk: applying rule 'pdflatex'... This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./ADflow.tex LaTeX2e <2017-04-15> Babel <3.18> and hyphenation patterns for 84 language(s) loaded. 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(/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [3] [4] Chapter 2. [5] [6] [7] [8] Chapter 3. (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pcr.fd) [9] [10] [11] [12] Chapter 4. Underfull \hbox (badness 5787) in paragraph at lines 551--554 \T1/ptm/m/n/10 di-tion in-for-ma-tion con- Underfull \hbox (badness 10000) in paragraph at lines 573--575 []|\T1/ptm/m/n/10 Flag to use spec-i-fied Underfull \hbox (badness 5231) in paragraph at lines 640--643 \T1/ptm/m/n/10 pre-ci-sion can ad-versely Underfull \hbox (badness 10000) in paragraph at lines 650--656 \T1/ptm/m/n/10 ^^Pvol-umeVari-ables^^Q may Underfull \hbox (badness 10000) in paragraph at lines 650--656 \T1/ptm/m/n/10 `isoSurface':{`Vx':- Underfull \hbox (badness 10000) in paragraph at lines 663--668 []|\T1/ptm/m/n/10 Only ap-pli-ca-ble for Underfull \hbox (badness 10000) in paragraph at lines 663--668 \T1/ptm/m/n/10 RANS/laminar com-pu- Underfull \hbox (badness 5667) in paragraph at lines 663--668 \T1/ptm/m/n/10 ve-loc-i-ties as the value Underfull \hbox (badness 10000) in paragraph at lines 663--668 \T1/ptm/m/n/10 the ve-loc-i-ties on the Underfull \hbox (badness 10000) in paragraph at lines 675--676 []|\T1/ptm/m/n/10 Set the dis-cretiza-tion Underfull \hbox (badness 10000) in paragraph at lines 675--676 \T1/ptm/m/n/10 gen-er-ally rec-om-mended Underfull \hbox (badness 6608) in paragraph at lines 675--676 \T1/ptm/m/n/10 speed, at the cost of Underfull \hbox (badness 10000) in paragraph at lines 675--676 \T1/ptm/m/n/10 nu-mer-i-cal ac-cu-racy. Underfull \hbox (badness 10000) in paragraph at lines 695--697 []|\T1/ptm/m/n/10 Set the dis-cretiza-tion Underfull \hbox (badness 6412) in paragraph at lines 695--697 \T1/ptm/m/n/10 method for the coarse Underfull \hbox (badness 10000) in paragraph at lines 695--697 \T1/ptm/m/n/10 be the same as the Underfull \hbox (badness 10000) in paragraph at lines 714--719 []|\T1/ptm/m/n/10 Type of \T1/ptm/m/it/10 solver \T1/ptm/m/n/10 or Underfull \hbox (badness 10000) in paragraph at lines 714--719 \T1/ptm/m/n/10 smoother to use with Underfull \hbox (badness 10000) in paragraph at lines 714--719 \T1/ptm/m/n/10 ized diagonal-dominant Underfull \hbox (badness 10000) in paragraph at lines 714--719 \T1/ptm/m/n/10 alternating-direction im- Underfull \hbox (badness 6658) in paragraph at lines 735--740 \T1/ptm/m/n/10 ex-ten-sively tested from Underfull \hbox (badness 7631) in paragraph at lines 735--740 \T1/ptm/m/n/10 been ex-ten-sively tested Underfull \hbox (badness 10000) in paragraph at lines 747--750 \T1/ptm/m/n/10 sim-u-la-tions have been Underfull \hbox (badness 10000) in paragraph at lines 763--764 []\T1/ptm/m/it/10 sae \T1/ptm/m/n/10 - Sparart Underfull \hbox (badness 10000) in paragraph at lines 763--764 \T1/ptm/m/n/10 Allmaras-Edward Underfull \hbox (badness 10000) in paragraph at lines 800--802 []|\T1/ptm/m/n/10 This pa-ram-e-ter af-fects Underfull \hbox (badness 7291) in paragraph at lines 800--802 \T1/ptm/m/n/10 how the to-tal resid-ual Underfull \hbox (badness 10000) in paragraph at lines 800--802 \T1/ptm/m/n/10 what tur-bu-lence model Underfull \hbox (badness 10000) in paragraph at lines 804--805 \T1/ptm/m/it/10 scalar \T1/ptm/m/n/10 - De-fault: Underfull \hbox (badness 10000) in paragraph at lines 807--808 []\T1/ptm/m/it/10 sae \T1/ptm/m/n/10 - Sparart Underfull \hbox (badness 10000) in paragraph at lines 807--808 \T1/ptm/m/n/10 Allmaras-Edward Underfull \hbox (badness 10000) in paragraph at lines 807--808 \T1/ptm/m/n/10 model - NOT Underfull \hbox (badness 10000) in paragraph at lines 810--811 []\T1/ptm/m/it/10 k omega wilcox Underfull \hbox (badness 10000) in paragraph at lines 810--811 \T1/ptm/m/n/10 - NOT IM-PLE- Underfull \hbox (badness 10000) in paragraph at lines 813--814 \T1/ptm/m/n/10 - NOT IM-PLE- Underfull \hbox (badness 10000) in paragraph at lines 833--838 \T1/ptm/m/n/10 This is gen-er-ally not Underfull \hbox (badness 10000) in paragraph at lines 833--838 \T1/ptm/m/n/10 give (po-ten-tially very) Underfull \hbox (badness 10000) in paragraph at lines 833--838 \T1/ptm/m/n/10 poor drag es-ti-mates. Overfull \hbox (13.11995pt too wide) in paragraph at lines 839--840 []|\T1/ptm/m/it/10 useApproximateWallDistance| Underfull \hbox (badness 10000) in paragraph at lines 845--853 \T1/ptm/m/n/10 dis-tance cal-cu-la-tion. Underfull \hbox (badness 10000) in paragraph at lines 845--853 \T1/ptm/m/n/10 ex-act wall dis-tances Underfull \hbox (badness 10000) in paragraph at lines 845--853 \T1/ptm/m/n/10 are com-puted dur-ing Underfull \hbox (badness 10000) in paragraph at lines 845--853 \T1/ptm/m/n/10 ini-tial-iza-tion and the Underfull \hbox (badness 10000) in paragraph at lines 845--853 \T1/ptm/m/n/10 para-met-ric lo-ca-tion of Underfull \hbox (badness 10000) in paragraph at lines 845--853 \T1/ptm/m/n/10 the ge-om-e-try de-forms Underfull \hbox (badness 5288) in paragraph at lines 860--866 \T1/ptm/m/n/10 ary con-di-tions are im- Underfull \hbox (badness 10000) in paragraph at lines 860--866 \T1/ptm/m/n/10 ple-mented for in-vis-cid Underfull \hbox (badness 6808) in paragraph at lines 860--866 \T1/ptm/m/it/10 ex-trap-o-la-tion\T1/ptm/m/n/10 , \T1/ptm/m/it/10 quadratic Underfull \hbox (badness 10000) in paragraph at lines 860--866 \T1/ptm/m/it/10 pres-sure ex-trap-o-la-tion Underfull \hbox (badness 5105) in paragraph at lines 873--877 \T1/ptm/m/n/10 de-fault value need not Overfull \hbox (6.90999pt too wide) in paragraph at lines 878--879 []|\T1/ptm/m/it/10 dissipationScalingExponent| Underfull \hbox (badness 10000) in paragraph at lines 975--979 \T1/ptm/m/n/10 mean-ing-ful for RANS Underfull \hbox (badness 10000) in paragraph at lines 975--979 \T1/ptm/m/n/10 sim-u-la-tions. Cer-tain Underfull \hbox (badness 10000) in paragraph at lines 975--979 \T1/ptm/m/n/10 ben-e-fit from a slight Underfull \hbox (badness 10000) in paragraph at lines 986--992 []|\T1/ptm/m/n/10 The Underfull \hbox (badness 10000) in paragraph at lines 986--992 \T1/ptm/m/n/10 the Runge-Kutta sim- Underfull \hbox (badness 10000) in paragraph at lines 986--992 \T1/ptm/m/n/10 main pa-ram-e-ter that Underfull \hbox (badness 10000) in paragraph at lines 986--992 \T1/ptm/m/n/10 de-ter-mines the over-all Underfull \hbox (badness 10000) in paragraph at lines 986--992 \T1/ptm/m/n/10 some ex-per-i-men-ta-tion [13] [14] [15] [16] Underfull \hbox (badness 7649) in paragraph at lines 1055--1059 \T1/ptm/m/n/10 could be run with-iout Underfull \hbox (badness 7238) in paragraph at lines 1070--1071 []\T1/ptm/m/it/10 bdf \T1/ptm/m/n/10 - 2nd or-der Underfull \hbox (badness 10000) in paragraph at lines 1070--1071 \T1/ptm/m/n/10 back-wards dif-fer- Underfull \hbox (badness 10000) in paragraph at lines 1079--1080 []\T1/ptm/m/it/10 md \T1/ptm/m/n/10 - Mul-ti-dis- Underfull \hbox (badness 10000) in paragraph at lines 1079--1080 \T1/ptm/m/n/10 ci-plinary (md) Underfull \hbox (badness 10000) in paragraph at lines 1079--1080 \T1/ptm/m/n/10 / Ar-bi-trary La- Underfull \hbox (badness 10000) in paragraph at lines 1079--1080 \T1/ptm/m/n/10 grangian Eu-le-rian Underfull \hbox (badness 5832) in paragraph at lines 1118--1121 []|\T1/ptm/m/n/10 The num-ber of ^^Pspec- Underfull \hbox (badness 7667) in paragraph at lines 1146--1148 []|\T1/ptm/m/n/10 Use a spec-i-fied Mach Underfull \hbox (badness 10000) in paragraph at lines 1146--1148 \T1/ptm/m/n/10 Time spec-tral anal-y-sis. Underfull \hbox (badness 10000) in paragraph at lines 1155--1157 \T1/ptm/m/n/10 Time spec-tral anal-y-sis. Underfull \hbox (badness 6995) in paragraph at lines 1164--1166 \T1/ptm/m/n/10 (pitch) mo-tion for the Underfull \hbox (badness 10000) in paragraph at lines 1173--1175 \T1/ptm/m/n/10 (yaw) mo-tion for the Underfull \hbox (badness 10000) in paragraph at lines 1173--1175 \T1/ptm/m/n/10 Time spec-tral anal-y-sis. Underfull \hbox (badness 10000) in paragraph at lines 1200--1202 []|\T1/ptm/m/n/10 Flag to com-pute time Underfull \hbox (badness 6268) in paragraph at lines 1209--1216 \T1/ptm/m/n/10 1 to 2 or-ders mag-ni- Underfull \hbox (badness 5431) in paragraph at lines 1234--1238 []|\T1/ptm/m/n/10 The con-ver-gence fac-tor Underfull \hbox (badness 10000) in paragraph at lines 1234--1238 \T1/ptm/m/n/10 grids dur-ing multi-grid Underfull \hbox (badness 6078) in paragraph at lines 1245--1249 \T1/ptm/m/n/10 ual can be above the [17] [18] [19] [20] [21] [22] [23] Underfull \hbox (badness 10000) in paragraph at lines 1279--1284 []|\T1/ptm/m/n/10 Type of PETSc KSP Underfull \hbox (badness 6364) in paragraph at lines 1279--1284 \T1/ptm/m/n/10 ^^U Transpose-Free quasi Underfull \hbox (badness 10000) in paragraph at lines 1291--1296 []|\T1/ptm/m/n/10 The rel-a-tive tol-er-ance Underfull \hbox (badness 10000) in paragraph at lines 1291--1296 \T1/ptm/m/n/10 New-ton so-lu-tion tech- Underfull \hbox (badness 5862) in paragraph at lines 1291--1296 \T1/ptm/m/n/10 dif-fi-cult tran-sients have Underfull \hbox (badness 6268) in paragraph at lines 1303--1306 []|\T1/ptm/m/n/10 The size of the GM- Underfull \hbox (badness 5652) in paragraph at lines 1313--1317 \T1/ptm/m/n/10 so-lu-tion; there-after the [24] [25] Underfull \hbox (badness 10000) in paragraph at lines 1535--1537 []|\T1/ptm/m/n/10 List of the vari-ables Underfull \hbox (badness 10000) in paragraph at lines 1535--1537 \T1/ptm/m/n/10 whose con-ver-gence Underfull \hbox (badness 10000) in paragraph at lines 1535--1537 \T1/ptm/m/n/10 should be mon-i-tored. 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[39] [40] Underfull \hbox (badness 10000) in paragraph at lines 2326--2326 []\T1/ptm/m/it/10 self\T1/ptm/m/n/10 , \T1/ptm/m/it/10 res-Bar=None\T1/ptm/m/n/ 10 , \T1/ptm/m/it/10 funcs-Bar=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 fBar=None\T 1/ptm/m/n/10 , Underfull \hbox (badness 6157) in paragraph at lines 2326--2326 \T1/ptm/m/it/10 wDeriv=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 xVDeriv=None\T1/ptm /m/n/10 , \T1/ptm/m/it/10 xS-Deriv=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 xD- [41] Underfull \hbox (badness 10000) in paragraph at lines 2380--2380 []\T1/ptm/m/it/10 self\T1/ptm/m/n/10 , \T1/ptm/m/it/10 xD-v-Dot=None\T1/ptm/m/n /10 , \T1/ptm/m/it/10 xS-Dot=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 xV-Dot=None\T 1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2380--2380 \T1/ptm/m/it/10 wDot=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 resid-u-alDeriv=False \T1/ptm/m/n/10 , \T1/ptm/m/it/10 funcDeriv=False\T1/ptm/m/n/10 , [42] [43] [44] [45] [46] [47] [48] Underfull \hbox (badness 10000) in paragraph at lines 3329--3338 []\T1/ptm/m/n/10 [dict] Dic-tio-nary of func-tion DV pairs to solve: {`func':{` dv':str, [49] [50] Underfull \hbox (badness 7168) in paragraph at lines 3510--3512 []\T1/ptm/m/n/10 only used from an ex-ter-nal [51] [52] Chapter 6. LaTeX Warning: Hyper reference `tutorial:adflow-tutorial' on page 53 undefined on input line 3611. [53] LaTeX Warning: Hyper reference `options:adflow-options' on page 54 undefined on input line 3671. [54] [55] [56] [57] [58] LaTeX Warning: Hyper reference `solvers:interpreting-output' on page 59 undefin ed on input line 3909. [59] [60] LaTeX Warning: Hyper reference `solvers:linear-solver-performance' on page 61 u ndefined on input line 4007. LaTeX Warning: Hyper reference `solvers:turbulence-coupling' on page 61 undefin ed on input line 4016. [61] LaTeX Warning: Hyper reference `performance:adflow-performance' on page 62 unde fined on input line 4080. [62] [63] [64] Chapter 7. [65] [66] Chapter 8. [67] [68] Underfull \hbox (badness 10000) in paragraph at lines 4362--4363 \T1/ptm/m/n/10 The main Python meth-ods for deriva-tive seed ma-nip-u-la-tion i n AD-flow are Underfull \hbox (badness 5431) in paragraph at lines 4362--4363 \T1/pcr/m/n/10 computeJacobianVectorProductFwd \T1/ptm/m/n/10 and \T1/pcr/m/n/1 0 computeJacobianVectorProductBwd\T1/ptm/m/n/10 , both lo-cated Underfull \hbox (badness 10000) in paragraph at lines 4382--4383 []\T1/ptm/m/n/10 The re-verse mas-ter (\T1/pcr/m/n/10 master_b\T1/ptm/m/n/10 ) rou-tine is wrapped by a thin wrap-per which is the [69] [70] No file mdolab-adflow.ind. [71] (./mdolab-adflow.aux) Package rerunfilecheck Warning: File `mdolab-adflow.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on mdolab-adflow.pdf (75 pages, 324078 bytes). Transcript written on mdolab-adflow.log. Latexmk: Index file 'mdolab-adflow.idx' was written Latexmk: Missing input file: 'mdolab-adflow.ind' from line 'No file mdolab-adflow.ind.' Latexmk: References changed. Latexmk: References changed. Latexmk: Log file says output to 'mdolab-adflow.pdf' Rule 'makeindex mdolab-adflow.idx': File changes, etc: Non-existent destination files: 'mdolab-adflow.ind' ------------ Run number 1 of rule 'makeindex mdolab-adflow.idx' ------------ ------------ Running 'makeindex -s python.ist -o "mdolab-adflow.ind" "mdolab-adflow.idx"' ------------ Latexmk: applying rule 'makeindex mdolab-adflow.idx'... This is makeindex, version 2.15 [TeX Live 2017] (kpathsea + Thai support). Scanning style file ./python.ist.......done (7 attributes redefined, 0 ignored). Scanning input file mdolab-adflow.idx....done (71 entries accepted, 0 rejected). Sorting entries....done (393 comparisons). Generating output file mdolab-adflow.ind....done (116 lines written, 0 warnings). Output written in mdolab-adflow.ind. Transcript written in mdolab-adflow.ilg. Rule 'pdflatex': File changes, etc: Changed files, or newly in use since previous run(s): 'mdolab-adflow.aux' 'mdolab-adflow.ind' ------------ Run number 2 of rule 'pdflatex' ------------ ------------ Running 'pdflatex -interaction=nonstopmode -recorder --jobname="mdolab-adflow" "ADflow.tex"' ------------ Latexmk: applying rule 'pdflatex'... This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./ADflow.tex LaTeX2e <2017-04-15> Babel <3.18> and hyphenation patterns for 84 language(s) loaded. 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Underfull \hbox (badness 5787) in paragraph at lines 551--554 \T1/ptm/m/n/10 di-tion in-for-ma-tion con- Underfull \hbox (badness 10000) in paragraph at lines 573--575 []|\T1/ptm/m/n/10 Flag to use spec-i-fied Underfull \hbox (badness 5231) in paragraph at lines 640--643 \T1/ptm/m/n/10 pre-ci-sion can ad-versely Underfull \hbox (badness 10000) in paragraph at lines 650--656 \T1/ptm/m/n/10 ^^Pvol-umeVari-ables^^Q may Underfull \hbox (badness 10000) in paragraph at lines 650--656 \T1/ptm/m/n/10 `isoSurface':{`Vx':- Underfull \hbox (badness 10000) in paragraph at lines 663--668 []|\T1/ptm/m/n/10 Only ap-pli-ca-ble for Underfull \hbox (badness 10000) in paragraph at lines 663--668 \T1/ptm/m/n/10 RANS/laminar com-pu- Underfull \hbox (badness 5667) in paragraph at lines 663--668 \T1/ptm/m/n/10 ve-loc-i-ties as the value Underfull \hbox (badness 10000) in paragraph at lines 663--668 \T1/ptm/m/n/10 the ve-loc-i-ties on the Underfull \hbox (badness 10000) in paragraph at lines 675--676 []|\T1/ptm/m/n/10 Set the dis-cretiza-tion Underfull \hbox (badness 10000) in paragraph at lines 675--676 \T1/ptm/m/n/10 gen-er-ally rec-om-mended Underfull \hbox (badness 6608) in paragraph at lines 675--676 \T1/ptm/m/n/10 speed, at the cost of Underfull \hbox (badness 10000) in paragraph at lines 675--676 \T1/ptm/m/n/10 nu-mer-i-cal ac-cu-racy. Underfull \hbox (badness 10000) in paragraph at lines 695--697 []|\T1/ptm/m/n/10 Set the dis-cretiza-tion Underfull \hbox (badness 6412) in paragraph at lines 695--697 \T1/ptm/m/n/10 method for the coarse Underfull \hbox (badness 10000) in paragraph at lines 695--697 \T1/ptm/m/n/10 be the same as the Underfull \hbox (badness 10000) in paragraph at lines 714--719 []|\T1/ptm/m/n/10 Type of \T1/ptm/m/it/10 solver \T1/ptm/m/n/10 or Underfull \hbox (badness 10000) in paragraph at lines 714--719 \T1/ptm/m/n/10 smoother to use with Underfull \hbox (badness 10000) in paragraph at lines 714--719 \T1/ptm/m/n/10 ized diagonal-dominant Underfull \hbox (badness 10000) in paragraph at lines 714--719 \T1/ptm/m/n/10 alternating-direction im- Underfull \hbox (badness 6658) in paragraph at lines 735--740 \T1/ptm/m/n/10 ex-ten-sively tested from Underfull \hbox (badness 7631) in paragraph at lines 735--740 \T1/ptm/m/n/10 been ex-ten-sively tested Underfull \hbox (badness 10000) in paragraph at lines 747--750 \T1/ptm/m/n/10 sim-u-la-tions have been Underfull \hbox (badness 10000) in paragraph at lines 763--764 []\T1/ptm/m/it/10 sae \T1/ptm/m/n/10 - Sparart Underfull \hbox (badness 10000) in paragraph at lines 763--764 \T1/ptm/m/n/10 Allmaras-Edward Underfull \hbox (badness 10000) in paragraph at lines 800--802 []|\T1/ptm/m/n/10 This pa-ram-e-ter af-fects Underfull \hbox (badness 7291) in paragraph at lines 800--802 \T1/ptm/m/n/10 how the to-tal resid-ual Underfull \hbox (badness 10000) in paragraph at lines 800--802 \T1/ptm/m/n/10 what tur-bu-lence model Underfull \hbox (badness 10000) in paragraph at lines 804--805 \T1/ptm/m/it/10 scalar \T1/ptm/m/n/10 - De-fault: Underfull \hbox (badness 10000) in paragraph at lines 807--808 []\T1/ptm/m/it/10 sae \T1/ptm/m/n/10 - Sparart Underfull \hbox (badness 10000) in paragraph at lines 807--808 \T1/ptm/m/n/10 Allmaras-Edward Underfull \hbox (badness 10000) in paragraph at lines 807--808 \T1/ptm/m/n/10 model - NOT Underfull \hbox (badness 10000) in paragraph at lines 810--811 []\T1/ptm/m/it/10 k omega wilcox Underfull \hbox (badness 10000) in paragraph at lines 810--811 \T1/ptm/m/n/10 - NOT IM-PLE- Underfull \hbox (badness 10000) in paragraph at lines 813--814 \T1/ptm/m/n/10 - NOT IM-PLE- Underfull \hbox (badness 10000) in paragraph at lines 833--838 \T1/ptm/m/n/10 This is gen-er-ally not Underfull \hbox (badness 10000) in paragraph at lines 833--838 \T1/ptm/m/n/10 give (po-ten-tially very) Underfull \hbox (badness 10000) in paragraph at lines 833--838 \T1/ptm/m/n/10 poor drag es-ti-mates. Overfull \hbox (13.11995pt too wide) in paragraph at lines 839--840 []|\T1/ptm/m/it/10 useApproximateWallDistance| Underfull \hbox (badness 10000) in paragraph at lines 845--853 \T1/ptm/m/n/10 dis-tance cal-cu-la-tion. Underfull \hbox (badness 10000) in paragraph at lines 845--853 \T1/ptm/m/n/10 ex-act wall dis-tances Underfull \hbox (badness 10000) in paragraph at lines 845--853 \T1/ptm/m/n/10 are com-puted dur-ing Underfull \hbox (badness 10000) in paragraph at lines 845--853 \T1/ptm/m/n/10 ini-tial-iza-tion and the Underfull \hbox (badness 10000) in paragraph at lines 845--853 \T1/ptm/m/n/10 para-met-ric lo-ca-tion of Underfull \hbox (badness 10000) in paragraph at lines 845--853 \T1/ptm/m/n/10 the ge-om-e-try de-forms Underfull \hbox (badness 5288) in paragraph at lines 860--866 \T1/ptm/m/n/10 ary con-di-tions are im- Underfull \hbox (badness 10000) in paragraph at lines 860--866 \T1/ptm/m/n/10 ple-mented for in-vis-cid Underfull \hbox (badness 6808) in paragraph at lines 860--866 \T1/ptm/m/it/10 ex-trap-o-la-tion\T1/ptm/m/n/10 , \T1/ptm/m/it/10 quadratic Underfull \hbox (badness 10000) in paragraph at lines 860--866 \T1/ptm/m/it/10 pres-sure ex-trap-o-la-tion Underfull \hbox (badness 5105) in paragraph at lines 873--877 \T1/ptm/m/n/10 de-fault value need not Overfull \hbox (6.90999pt too wide) in paragraph at lines 878--879 []|\T1/ptm/m/it/10 dissipationScalingExponent| Underfull \hbox (badness 10000) in paragraph at lines 975--979 \T1/ptm/m/n/10 mean-ing-ful for RANS Underfull \hbox (badness 10000) in paragraph at lines 975--979 \T1/ptm/m/n/10 sim-u-la-tions. Cer-tain Underfull \hbox (badness 10000) in paragraph at lines 975--979 \T1/ptm/m/n/10 ben-e-fit from a slight Underfull \hbox (badness 10000) in paragraph at lines 986--992 []|\T1/ptm/m/n/10 The Underfull \hbox (badness 10000) in paragraph at lines 986--992 \T1/ptm/m/n/10 the Runge-Kutta sim- Underfull \hbox (badness 10000) in paragraph at lines 986--992 \T1/ptm/m/n/10 main pa-ram-e-ter that Underfull \hbox (badness 10000) in paragraph at lines 986--992 \T1/ptm/m/n/10 de-ter-mines the over-all Underfull \hbox (badness 10000) in paragraph at lines 986--992 \T1/ptm/m/n/10 some ex-per-i-men-ta-tion [13] [14] [15] [16] Underfull \hbox (badness 7649) in paragraph at lines 1055--1059 \T1/ptm/m/n/10 could be run with-iout Underfull \hbox (badness 7238) in paragraph at lines 1070--1071 []\T1/ptm/m/it/10 bdf \T1/ptm/m/n/10 - 2nd or-der Underfull \hbox (badness 10000) in paragraph at lines 1070--1071 \T1/ptm/m/n/10 back-wards dif-fer- Underfull \hbox (badness 10000) in paragraph at lines 1079--1080 []\T1/ptm/m/it/10 md \T1/ptm/m/n/10 - Mul-ti-dis- Underfull \hbox (badness 10000) in paragraph at lines 1079--1080 \T1/ptm/m/n/10 ci-plinary (md) Underfull \hbox (badness 10000) in paragraph at lines 1079--1080 \T1/ptm/m/n/10 / Ar-bi-trary La- Underfull \hbox (badness 10000) in paragraph at lines 1079--1080 \T1/ptm/m/n/10 grangian Eu-le-rian Underfull \hbox (badness 5832) in paragraph at lines 1118--1121 []|\T1/ptm/m/n/10 The num-ber of ^^Pspec- Underfull \hbox (badness 7667) in paragraph at lines 1146--1148 []|\T1/ptm/m/n/10 Use a spec-i-fied Mach Underfull \hbox (badness 10000) in paragraph at lines 1146--1148 \T1/ptm/m/n/10 Time spec-tral anal-y-sis. Underfull \hbox (badness 10000) in paragraph at lines 1155--1157 \T1/ptm/m/n/10 Time spec-tral anal-y-sis. Underfull \hbox (badness 6995) in paragraph at lines 1164--1166 \T1/ptm/m/n/10 (pitch) mo-tion for the Underfull \hbox (badness 10000) in paragraph at lines 1173--1175 \T1/ptm/m/n/10 (yaw) mo-tion for the Underfull \hbox (badness 10000) in paragraph at lines 1173--1175 \T1/ptm/m/n/10 Time spec-tral anal-y-sis. Underfull \hbox (badness 10000) in paragraph at lines 1200--1202 []|\T1/ptm/m/n/10 Flag to com-pute time Underfull \hbox (badness 6268) in paragraph at lines 1209--1216 \T1/ptm/m/n/10 1 to 2 or-ders mag-ni- Underfull \hbox (badness 5431) in paragraph at lines 1234--1238 []|\T1/ptm/m/n/10 The con-ver-gence fac-tor Underfull \hbox (badness 10000) in paragraph at lines 1234--1238 \T1/ptm/m/n/10 grids dur-ing multi-grid Underfull \hbox (badness 6078) in paragraph at lines 1245--1249 \T1/ptm/m/n/10 ual can be above the [17] [18] [19] [20] [21] [22] [23] Underfull \hbox (badness 10000) in paragraph at lines 1279--1284 []|\T1/ptm/m/n/10 Type of PETSc KSP Underfull \hbox (badness 6364) in paragraph at lines 1279--1284 \T1/ptm/m/n/10 ^^U Transpose-Free quasi Underfull \hbox (badness 10000) in paragraph at lines 1291--1296 []|\T1/ptm/m/n/10 The rel-a-tive tol-er-ance Underfull \hbox (badness 10000) in paragraph at lines 1291--1296 \T1/ptm/m/n/10 New-ton so-lu-tion tech- Underfull \hbox (badness 5862) in paragraph at lines 1291--1296 \T1/ptm/m/n/10 dif-fi-cult tran-sients have Underfull \hbox (badness 6268) in paragraph at lines 1303--1306 []|\T1/ptm/m/n/10 The size of the GM- Underfull \hbox (badness 5652) in paragraph at lines 1313--1317 \T1/ptm/m/n/10 so-lu-tion; there-after the [24] [25] Underfull \hbox (badness 10000) in paragraph at lines 1535--1537 []|\T1/ptm/m/n/10 List of the vari-ables Underfull \hbox (badness 10000) in paragraph at lines 1535--1537 \T1/ptm/m/n/10 whose con-ver-gence Underfull \hbox (badness 10000) in paragraph at lines 1535--1537 \T1/ptm/m/n/10 should be mon-i-tored. Underfull \hbox (badness 10000) in paragraph at lines 1539--1540 []\T1/ptm/m/it/10 resrho \T1/ptm/m/n/10 (den-sity Underfull \hbox (badness 10000) in paragraph at lines 1542--1543 []\T1/ptm/m/it/10 resmom \T1/ptm/m/n/10 (mo-men- Underfull \hbox (badness 10000) in paragraph at lines 1560--1561 []\T1/ptm/m/it/10 cd \T1/ptm/m/n/10 (drag co-ef-fi- Underfull \hbox (badness 10000) in paragraph at lines 1569--1570 []\T1/ptm/m/it/10 cfx \T1/ptm/m/n/10 (force co- Underfull \hbox (badness 10000) in paragraph at lines 1569--1570 \T1/ptm/m/n/10 ef-fi-cient in x- Underfull \hbox (badness 10000) in paragraph at lines 1572--1573 []\T1/ptm/m/it/10 cfy \T1/ptm/m/n/10 (force co- Underfull \hbox (badness 10000) in paragraph at lines 1572--1573 \T1/ptm/m/n/10 ef-fi-cient in y- Underfull \hbox (badness 10000) in paragraph at lines 1575--1576 []\T1/ptm/m/it/10 cfz \T1/ptm/m/n/10 (force co- Underfull \hbox (badness 10000) in paragraph at lines 1575--1576 \T1/ptm/m/n/10 ef-fi-cient in z- Underfull \hbox (badness 10000) in paragraph at lines 1578--1579 []\T1/ptm/m/it/10 cmx \T1/ptm/m/n/10 (mo-ment Underfull \hbox (badness 10000) in paragraph at lines 1578--1579 \T1/ptm/m/n/10 co-ef-fi-cient in Underfull \hbox (badness 10000) in paragraph at lines 1581--1582 []\T1/ptm/m/it/10 cmy \T1/ptm/m/n/10 (mo-ment Underfull \hbox (badness 10000) in paragraph at lines 1581--1582 \T1/ptm/m/n/10 co-ef-fi-cient in Underfull \hbox (badness 10000) in paragraph at lines 1584--1585 []\T1/ptm/m/it/10 cmz \T1/ptm/m/n/10 (mo-ment Underfull \hbox (badness 10000) in paragraph at lines 1584--1585 \T1/ptm/m/n/10 co-ef-fi-cient in Underfull \hbox (badness 10000) in paragraph at lines 1587--1588 []\T1/ptm/m/it/10 hdiff \T1/ptm/m/n/10 (max-i-mum Underfull \hbox (badness 10000) in paragraph at lines 1587--1588 \T1/ptm/m/n/10 rel-a-tive dif-fer-ence Underfull \hbox (badness 10000) in paragraph at lines 1587--1588 \T1/ptm/m/n/10 be-tween H and Underfull \hbox (badness 10000) in paragraph at lines 1590--1591 []\T1/ptm/m/it/10 mach \T1/ptm/m/n/10 (max-i-mum Underfull \hbox (badness 10000) in paragraph at lines 1596--1597 []\T1/ptm/m/it/10 eddyv \T1/ptm/m/n/10 (max-i-mum Underfull \hbox (badness 10000) in paragraph at lines 1605--1606 []|\T1/ptm/m/n/10 [`cp','vx', `vy', `vz', Underfull \hbox (badness 7012) in paragraph at lines 1637--1638 []\T1/ptm/m/it/10 cf \T1/ptm/m/n/10 (mag-ni-tude of Underfull \hbox (badness 10000) in paragraph at lines 1669--1671 []|\T1/ptm/m/n/10 The vari-ables which Underfull \hbox (badness 10000) in paragraph at lines 1669--1671 \T1/ptm/m/n/10 restart, writ-ten to the Underfull \hbox (badness 10000) in paragraph at lines 1669--1671 \T1/ptm/m/n/10 CGNS vol-ume so-lu- Underfull \hbox (badness 10000) in paragraph at lines 1706--1707 []\T1/ptm/m/it/10 macht \T1/ptm/m/n/10 (tur-bu-lent Underfull \hbox (badness 10000) in paragraph at lines 1721--1722 []\T1/ptm/m/it/10 resrho \T1/ptm/m/n/10 (den-sity Underfull \hbox (badness 10000) in paragraph at lines 1724--1725 []\T1/ptm/m/it/10 resmom \T1/ptm/m/n/10 (mo-men- Overfull \hbox (0.85033pt too wide) in paragraph at lines 1774--1775 []|\T1/ptm/m/it/10 adjointL2ConvergenceAbs| [26] [27] [28] [29] Overfull \hbox (16.57002pt too wide) in paragraph at lines 1874--1875 []|\T1/ptm/m/it/10 dissipationLumpingParameter| Underfull \hbox (badness 6412) in paragraph at lines 1909--1911 []|\T1/ptm/m/n/10 The type of pre-con-di- Overfull \hbox (13.39014pt too wide) in paragraph at lines 1975--1976 []|\T1/ptm/m/it/10 applyAdjointPCSubspaceSize| [30] [31] [32] [33] [34] [35] [36] [37] [38] Chapter 5. [39] [40] Underfull \hbox (badness 10000) in paragraph at lines 2326--2326 []\T1/ptm/m/it/10 self\T1/ptm/m/n/10 , \T1/ptm/m/it/10 res-Bar=None\T1/ptm/m/n/ 10 , \T1/ptm/m/it/10 funcs-Bar=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 fBar=None\T 1/ptm/m/n/10 , Underfull \hbox (badness 6157) in paragraph at lines 2326--2326 \T1/ptm/m/it/10 wDeriv=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 xVDeriv=None\T1/ptm /m/n/10 , \T1/ptm/m/it/10 xS-Deriv=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 xD- [41] Underfull \hbox (badness 10000) in paragraph at lines 2380--2380 []\T1/ptm/m/it/10 self\T1/ptm/m/n/10 , \T1/ptm/m/it/10 xD-v-Dot=None\T1/ptm/m/n /10 , \T1/ptm/m/it/10 xS-Dot=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 xV-Dot=None\T 1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2380--2380 \T1/ptm/m/it/10 wDot=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 resid-u-alDeriv=False \T1/ptm/m/n/10 , \T1/ptm/m/it/10 funcDeriv=False\T1/ptm/m/n/10 , [42] [43] [44] [45] [46] [47] [48] Underfull \hbox (badness 10000) in paragraph at lines 3329--3338 []\T1/ptm/m/n/10 [dict] Dic-tio-nary of func-tion DV pairs to solve: {`func':{` dv':str, [49] [50] Underfull \hbox (badness 7168) in paragraph at lines 3510--3512 []\T1/ptm/m/n/10 only used from an ex-ter-nal [51] [52] Chapter 6. [53] [54] [55] [56] [57] [58] [59] [60] [61] [62] [63] [64] Chapter 7. [65] [66] Chapter 8. [67] [68] Underfull \hbox (badness 10000) in paragraph at lines 4362--4363 \T1/ptm/m/n/10 The main Python meth-ods for deriva-tive seed ma-nip-u-la-tion i n AD-flow are Underfull \hbox (badness 5431) in paragraph at lines 4362--4363 \T1/pcr/m/n/10 computeJacobianVectorProductFwd \T1/ptm/m/n/10 and \T1/pcr/m/n/1 0 computeJacobianVectorProductBwd\T1/ptm/m/n/10 , both lo-cated Underfull \hbox (badness 10000) in paragraph at lines 4382--4383 []\T1/ptm/m/n/10 The re-verse mas-ter (\T1/pcr/m/n/10 master_b\T1/ptm/m/n/10 ) rou-tine is wrapped by a thin wrap-per which is the [69] [70] (./mdolab-adflow.ind [71] [72] Underfull \hbox (badness 10000) in paragraph at lines 9--10 []\T1/pcr/m/n/10 addFunction() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ad-flow.pyADflow .ADFLOW Underfull \hbox (badness 10000) in paragraph at lines 10--11 []\T1/pcr/m/n/10 addFunctions() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ad-flow.pyADflo w.ADFLOW Underfull \hbox (badness 10000) in paragraph at lines 11--12 []\T1/pcr/m/n/10 addIntegrationSurface() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ad- Underfull \hbox (badness 10000) in paragraph at lines 12--13 []\T1/pcr/m/n/10 addLiftDistribution() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ad- Underfull \hbox (badness 10000) in paragraph at lines 14--15 []\T1/pcr/m/n/10 addUserFunction() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ad-flow.pyAD flow.ADFLOW Underfull \hbox (badness 10000) in paragraph at lines 16--17 []\T1/pcr/m/n/10 advanceTimeStepCounter() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ad- Underfull \hbox (badness 10000) in paragraph at lines 21--23 []\T1/pcr/m/n/10 computeJacobianVectorProductBwd() \T1/ptm/m/n/10 (\T1/ptm/m/it /10 ad- Underfull \hbox (badness 10000) in paragraph at lines 23--25 []\T1/pcr/m/n/10 computeJacobianVectorProductFwd() \T1/ptm/m/n/10 (\T1/ptm/m/it /10 ad- Underfull \hbox (badness 10000) in paragraph at lines 25--27 []\T1/pcr/m/n/10 computeStabilityParameters() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 a d- Underfull \hbox (badness 10000) in paragraph at lines 27--28 []\T1/pcr/m/n/10 createSlaveAeroProblem() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ad- Underfull \hbox (badness 10000) in paragraph at lines 31--32 []\T1/pcr/m/n/10 evalFunctions() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ad-flow.pyADfl ow.ADFLOW Underfull \hbox (badness 10000) in paragraph at lines 37--38 []\T1/pcr/m/n/10 getAdjointResNorms() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ad- Underfull \hbox (badness 10000) in paragraph at lines 38--39 []\T1/pcr/m/n/10 getAdjointStateSize() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ad- Underfull \hbox (badness 10000) in paragraph at lines 40--41 []\T1/pcr/m/n/10 getHeatFluxes() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ad-flow.pyADfl ow.ADFLOW Underfull \hbox (badness 10000) in paragraph at lines 41--42 []\T1/pcr/m/n/10 getPointSetName() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ad-flow.pyAD flow.ADFLOW Underfull \hbox (badness 10000) in paragraph at lines 42--43 []\T1/pcr/m/n/10 getResidual() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ad-flow.pyADflow .ADFLOW Underfull \hbox (badness 10000) in paragraph at lines 43--44 []\T1/pcr/m/n/10 getResNorms() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ad-flow.pyADflow .ADFLOW Underfull \hbox (badness 10000) in paragraph at lines 44--45 []\T1/pcr/m/n/10 getSolution() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ad-flow.pyADflow .ADFLOW Underfull \hbox (badness 10000) in paragraph at lines 45--46 []\T1/pcr/m/n/10 getSolverMeshIndices() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ad- Underfull \hbox (badness 10000) in paragraph at lines 46--47 []\T1/pcr/m/n/10 getSpatialPerturbation() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ad- Underfull \hbox (badness 10000) in paragraph at lines 47--48 []\T1/pcr/m/n/10 getSpatialSize() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ad-flow.pyADf low.ADFLOW Underfull \hbox (badness 10000) in paragraph at lines 48--49 []\T1/pcr/m/n/10 getStatePerturbation() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ad- Underfull \hbox (badness 10000) in paragraph at lines 50--51 []\T1/pcr/m/n/10 getStateSize() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ad-flow.pyADflo w.ADFLOW Underfull \hbox (badness 10000) in paragraph at lines 51--52 []\T1/pcr/m/n/10 getSurfaceConnectivity() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ad- Underfull \hbox (badness 10000) in paragraph at lines 52--53 []\T1/pcr/m/n/10 getSurfacePerturbation() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ad- Underfull \hbox (badness 7631) in paragraph at lines 53--54 []\T1/pcr/m/n/10 getSurfacePoints() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ad-flow.pyA Dflow.ADFLOW Underfull \hbox (badness 10000) in paragraph at lines 54--56 []\T1/pcr/m/n/10 getUniqueSpatialPerturbationNorm() Underfull \hbox (badness 10000) in paragraph at lines 56--57 []\T1/pcr/m/n/10 globalAdjointPreCon() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ad- Underfull \hbox (badness 10000) in paragraph at lines 57--58 []\T1/pcr/m/n/10 globalNKPreCon() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ad-flow.pyADf low.ADFLOW [73] Underfull \hbox (badness 10000) in paragraph at lines 65--66 []\T1/pcr/m/n/10 propagateUncertainty() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ad- Underfull \hbox (badness 10000) in paragraph at lines 69--70 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(rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on mdolab-adflow.pdf (78 pages, 333633 bytes). Transcript written on mdolab-adflow.log. Latexmk: Index file 'mdolab-adflow.idx' was written Latexmk: References changed. Latexmk: Log file says output to 'mdolab-adflow.pdf' Rule 'pdflatex': File changes, etc: Changed files, or newly in use since previous run(s): 'mdolab-adflow.aux' 'mdolab-adflow.out' 'mdolab-adflow.toc' ------------ Run number 3 of rule 'pdflatex' ------------ ------------ Running 'pdflatex -interaction=nonstopmode -recorder --jobname="mdolab-adflow" "ADflow.tex"' ------------ Latexmk: applying rule 'pdflatex'... 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Underfull \hbox (badness 5787) in paragraph at lines 551--554 \T1/ptm/m/n/10 di-tion in-for-ma-tion con- Underfull \hbox (badness 10000) in paragraph at lines 573--575 []|\T1/ptm/m/n/10 Flag to use spec-i-fied Underfull \hbox (badness 5231) in paragraph at lines 640--643 \T1/ptm/m/n/10 pre-ci-sion can ad-versely Underfull \hbox (badness 10000) in paragraph at lines 650--656 \T1/ptm/m/n/10 ^^Pvol-umeVari-ables^^Q may Underfull \hbox (badness 10000) in paragraph at lines 650--656 \T1/ptm/m/n/10 `isoSurface':{`Vx':- Underfull \hbox (badness 10000) in paragraph at lines 663--668 []|\T1/ptm/m/n/10 Only ap-pli-ca-ble for Underfull \hbox (badness 10000) in paragraph at lines 663--668 \T1/ptm/m/n/10 RANS/laminar com-pu- Underfull \hbox (badness 5667) in paragraph at lines 663--668 \T1/ptm/m/n/10 ve-loc-i-ties as the value Underfull \hbox (badness 10000) in paragraph at lines 663--668 \T1/ptm/m/n/10 the ve-loc-i-ties on the Underfull \hbox (badness 10000) in paragraph at lines 675--676 []|\T1/ptm/m/n/10 Set the dis-cretiza-tion Underfull \hbox (badness 10000) in paragraph at lines 675--676 \T1/ptm/m/n/10 gen-er-ally rec-om-mended Underfull \hbox (badness 6608) in paragraph at lines 675--676 \T1/ptm/m/n/10 speed, at the cost of Underfull \hbox (badness 10000) in paragraph at lines 675--676 \T1/ptm/m/n/10 nu-mer-i-cal ac-cu-racy. 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Underfull \hbox (badness 10000) in paragraph at lines 845--853 \T1/ptm/m/n/10 ex-act wall dis-tances Underfull \hbox (badness 10000) in paragraph at lines 845--853 \T1/ptm/m/n/10 are com-puted dur-ing Underfull \hbox (badness 10000) in paragraph at lines 845--853 \T1/ptm/m/n/10 ini-tial-iza-tion and the Underfull \hbox (badness 10000) in paragraph at lines 845--853 \T1/ptm/m/n/10 para-met-ric lo-ca-tion of Underfull \hbox (badness 10000) in paragraph at lines 845--853 \T1/ptm/m/n/10 the ge-om-e-try de-forms Underfull \hbox (badness 5288) in paragraph at lines 860--866 \T1/ptm/m/n/10 ary con-di-tions are im- Underfull \hbox (badness 10000) in paragraph at lines 860--866 \T1/ptm/m/n/10 ple-mented for in-vis-cid Underfull \hbox (badness 6808) in paragraph at lines 860--866 \T1/ptm/m/it/10 ex-trap-o-la-tion\T1/ptm/m/n/10 , \T1/ptm/m/it/10 quadratic Underfull \hbox (badness 10000) in paragraph at lines 860--866 \T1/ptm/m/it/10 pres-sure ex-trap-o-la-tion Underfull \hbox (badness 5105) in paragraph at lines 873--877 \T1/ptm/m/n/10 de-fault value need not Overfull \hbox (6.90999pt too wide) in paragraph at lines 878--879 []|\T1/ptm/m/it/10 dissipationScalingExponent| Underfull \hbox (badness 10000) in paragraph at lines 975--979 \T1/ptm/m/n/10 mean-ing-ful for RANS Underfull \hbox (badness 10000) in paragraph at lines 975--979 \T1/ptm/m/n/10 sim-u-la-tions. Cer-tain Underfull \hbox (badness 10000) in paragraph at lines 975--979 \T1/ptm/m/n/10 ben-e-fit from a slight Underfull \hbox (badness 10000) in paragraph at lines 986--992 []|\T1/ptm/m/n/10 The Underfull \hbox (badness 10000) in paragraph at lines 986--992 \T1/ptm/m/n/10 the Runge-Kutta sim- Underfull \hbox (badness 10000) in paragraph at lines 986--992 \T1/ptm/m/n/10 main pa-ram-e-ter that Underfull \hbox (badness 10000) in paragraph at lines 986--992 \T1/ptm/m/n/10 de-ter-mines the over-all Underfull \hbox (badness 10000) in paragraph at lines 986--992 \T1/ptm/m/n/10 some ex-per-i-men-ta-tion [13] [14] [15] [16] Underfull \hbox (badness 7649) in paragraph at lines 1055--1059 \T1/ptm/m/n/10 could be run with-iout Underfull \hbox (badness 7238) in paragraph at lines 1070--1071 []\T1/ptm/m/it/10 bdf \T1/ptm/m/n/10 - 2nd or-der Underfull \hbox (badness 10000) in paragraph at lines 1070--1071 \T1/ptm/m/n/10 back-wards dif-fer- Underfull \hbox (badness 10000) in paragraph at lines 1079--1080 []\T1/ptm/m/it/10 md \T1/ptm/m/n/10 - Mul-ti-dis- Underfull \hbox (badness 10000) in paragraph at lines 1079--1080 \T1/ptm/m/n/10 ci-plinary (md) Underfull \hbox (badness 10000) in paragraph at lines 1079--1080 \T1/ptm/m/n/10 / Ar-bi-trary La- Underfull \hbox (badness 10000) in paragraph at lines 1079--1080 \T1/ptm/m/n/10 grangian Eu-le-rian Underfull \hbox (badness 5832) in paragraph at lines 1118--1121 []|\T1/ptm/m/n/10 The num-ber of ^^Pspec- Underfull \hbox (badness 7667) in paragraph at lines 1146--1148 []|\T1/ptm/m/n/10 Use a spec-i-fied Mach Underfull \hbox (badness 10000) in paragraph at lines 1146--1148 \T1/ptm/m/n/10 Time spec-tral anal-y-sis. Underfull \hbox (badness 10000) in paragraph at lines 1155--1157 \T1/ptm/m/n/10 Time spec-tral anal-y-sis. Underfull \hbox (badness 6995) in paragraph at lines 1164--1166 \T1/ptm/m/n/10 (pitch) mo-tion for the Underfull \hbox (badness 10000) in paragraph at lines 1173--1175 \T1/ptm/m/n/10 (yaw) mo-tion for the Underfull \hbox (badness 10000) in paragraph at lines 1173--1175 \T1/ptm/m/n/10 Time spec-tral anal-y-sis. Underfull \hbox (badness 10000) in paragraph at lines 1200--1202 []|\T1/ptm/m/n/10 Flag to com-pute time Underfull \hbox (badness 6268) in paragraph at lines 1209--1216 \T1/ptm/m/n/10 1 to 2 or-ders mag-ni- Underfull \hbox (badness 5431) in paragraph at lines 1234--1238 []|\T1/ptm/m/n/10 The con-ver-gence fac-tor Underfull \hbox (badness 10000) in paragraph at lines 1234--1238 \T1/ptm/m/n/10 grids dur-ing multi-grid Underfull \hbox (badness 6078) in paragraph at lines 1245--1249 \T1/ptm/m/n/10 ual can be above the [17] [18] [19] [20] [21] [22] [23] Underfull \hbox (badness 10000) in paragraph at lines 1279--1284 []|\T1/ptm/m/n/10 Type of PETSc KSP Underfull \hbox (badness 6364) in paragraph at lines 1279--1284 \T1/ptm/m/n/10 ^^U Transpose-Free quasi Underfull \hbox (badness 10000) in paragraph at lines 1291--1296 []|\T1/ptm/m/n/10 The rel-a-tive tol-er-ance Underfull \hbox (badness 10000) in paragraph at lines 1291--1296 \T1/ptm/m/n/10 New-ton so-lu-tion tech- Underfull \hbox (badness 5862) in paragraph at lines 1291--1296 \T1/ptm/m/n/10 dif-fi-cult tran-sients have Underfull \hbox (badness 6268) in paragraph at lines 1303--1306 []|\T1/ptm/m/n/10 The size of the GM- Underfull \hbox (badness 5652) in paragraph at lines 1313--1317 \T1/ptm/m/n/10 so-lu-tion; there-after the [24] [25] Underfull \hbox (badness 10000) in paragraph at lines 1535--1537 []|\T1/ptm/m/n/10 List of the vari-ables Underfull \hbox (badness 10000) in paragraph at lines 1535--1537 \T1/ptm/m/n/10 whose con-ver-gence Underfull \hbox (badness 10000) in paragraph at lines 1535--1537 \T1/ptm/m/n/10 should be mon-i-tored. Underfull \hbox (badness 10000) in paragraph at lines 1539--1540 []\T1/ptm/m/it/10 resrho \T1/ptm/m/n/10 (den-sity Underfull \hbox (badness 10000) in paragraph at lines 1542--1543 []\T1/ptm/m/it/10 resmom \T1/ptm/m/n/10 (mo-men- Underfull \hbox (badness 10000) in paragraph at lines 1560--1561 []\T1/ptm/m/it/10 cd \T1/ptm/m/n/10 (drag co-ef-fi- Underfull \hbox (badness 10000) in paragraph at lines 1569--1570 []\T1/ptm/m/it/10 cfx \T1/ptm/m/n/10 (force co- Underfull \hbox (badness 10000) in paragraph at lines 1569--1570 \T1/ptm/m/n/10 ef-fi-cient in x- Underfull \hbox (badness 10000) in paragraph at lines 1572--1573 []\T1/ptm/m/it/10 cfy \T1/ptm/m/n/10 (force co- Underfull \hbox (badness 10000) in paragraph at lines 1572--1573 \T1/ptm/m/n/10 ef-fi-cient in y- Underfull \hbox (badness 10000) in paragraph at lines 1575--1576 []\T1/ptm/m/it/10 cfz \T1/ptm/m/n/10 (force co- Underfull \hbox (badness 10000) in paragraph at lines 1575--1576 \T1/ptm/m/n/10 ef-fi-cient in z- Underfull \hbox (badness 10000) in paragraph at lines 1578--1579 []\T1/ptm/m/it/10 cmx \T1/ptm/m/n/10 (mo-ment Underfull \hbox (badness 10000) in paragraph at lines 1578--1579 \T1/ptm/m/n/10 co-ef-fi-cient in Underfull \hbox (badness 10000) in paragraph at lines 1581--1582 []\T1/ptm/m/it/10 cmy \T1/ptm/m/n/10 (mo-ment Underfull \hbox (badness 10000) in paragraph at lines 1581--1582 \T1/ptm/m/n/10 co-ef-fi-cient in Underfull \hbox (badness 10000) in paragraph at lines 1584--1585 []\T1/ptm/m/it/10 cmz \T1/ptm/m/n/10 (mo-ment Underfull \hbox (badness 10000) in paragraph at lines 1584--1585 \T1/ptm/m/n/10 co-ef-fi-cient in Underfull \hbox (badness 10000) in paragraph at lines 1587--1588 []\T1/ptm/m/it/10 hdiff \T1/ptm/m/n/10 (max-i-mum Underfull \hbox (badness 10000) in paragraph at lines 1587--1588 \T1/ptm/m/n/10 rel-a-tive dif-fer-ence Underfull \hbox (badness 10000) in paragraph at lines 1587--1588 \T1/ptm/m/n/10 be-tween H and Underfull \hbox (badness 10000) in paragraph at lines 1590--1591 []\T1/ptm/m/it/10 mach \T1/ptm/m/n/10 (max-i-mum Underfull \hbox (badness 10000) in paragraph at lines 1596--1597 []\T1/ptm/m/it/10 eddyv \T1/ptm/m/n/10 (max-i-mum Underfull \hbox (badness 10000) in paragraph at lines 1605--1606 []|\T1/ptm/m/n/10 [`cp','vx', `vy', `vz', Underfull \hbox (badness 7012) in paragraph at lines 1637--1638 []\T1/ptm/m/it/10 cf \T1/ptm/m/n/10 (mag-ni-tude of Underfull \hbox (badness 10000) in paragraph at lines 1669--1671 []|\T1/ptm/m/n/10 The vari-ables which Underfull \hbox (badness 10000) in paragraph at lines 1669--1671 \T1/ptm/m/n/10 restart, writ-ten to the Underfull \hbox (badness 10000) in paragraph at lines 1669--1671 \T1/ptm/m/n/10 CGNS vol-ume so-lu- Underfull \hbox (badness 10000) in paragraph at lines 1706--1707 []\T1/ptm/m/it/10 macht \T1/ptm/m/n/10 (tur-bu-lent Underfull \hbox (badness 10000) in paragraph at lines 1721--1722 []\T1/ptm/m/it/10 resrho \T1/ptm/m/n/10 (den-sity Underfull \hbox (badness 10000) in paragraph at lines 1724--1725 []\T1/ptm/m/it/10 resmom \T1/ptm/m/n/10 (mo-men- Overfull \hbox (0.85033pt too wide) in paragraph at lines 1774--1775 []|\T1/ptm/m/it/10 adjointL2ConvergenceAbs| [26] [27] [28] [29] Overfull \hbox (16.57002pt too wide) in paragraph at lines 1874--1875 []|\T1/ptm/m/it/10 dissipationLumpingParameter| Underfull \hbox (badness 6412) in paragraph at lines 1909--1911 []|\T1/ptm/m/n/10 The type of pre-con-di- Overfull \hbox (13.39014pt too wide) in paragraph at lines 1975--1976 []|\T1/ptm/m/it/10 applyAdjointPCSubspaceSize| [30] [31] [32] [33] [34] [35] [36] [37] [38] Chapter 5. [39] [40] Underfull \hbox (badness 10000) in paragraph at lines 2326--2326 []\T1/ptm/m/it/10 self\T1/ptm/m/n/10 , \T1/ptm/m/it/10 res-Bar=None\T1/ptm/m/n/ 10 , \T1/ptm/m/it/10 funcs-Bar=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 fBar=None\T 1/ptm/m/n/10 , Underfull \hbox (badness 6157) in paragraph at lines 2326--2326 \T1/ptm/m/it/10 wDeriv=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 xVDeriv=None\T1/ptm /m/n/10 , \T1/ptm/m/it/10 xS-Deriv=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 xD- [41] Underfull \hbox (badness 10000) in paragraph at lines 2380--2380 []\T1/ptm/m/it/10 self\T1/ptm/m/n/10 , \T1/ptm/m/it/10 xD-v-Dot=None\T1/ptm/m/n /10 , \T1/ptm/m/it/10 xS-Dot=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 xV-Dot=None\T 1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2380--2380 \T1/ptm/m/it/10 wDot=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 resid-u-alDeriv=False \T1/ptm/m/n/10 , \T1/ptm/m/it/10 funcDeriv=False\T1/ptm/m/n/10 , [42] [43] [44] [45] [46] [47] [48] Underfull \hbox (badness 10000) in paragraph at lines 3329--3338 []\T1/ptm/m/n/10 [dict] Dic-tio-nary of func-tion DV pairs to solve: {`func':{` dv':str, [49] [50] Underfull \hbox (badness 7168) in paragraph at lines 3510--3512 []\T1/ptm/m/n/10 only used from an ex-ter-nal [51] [52] Chapter 6. [53] [54] [55] [56] [57] [58] [59] [60] [61] [62] [63] [64] Chapter 7. [65] [66] Chapter 8. [67] [68] Underfull \hbox (badness 10000) in paragraph at lines 4362--4363 \T1/ptm/m/n/10 The main Python meth-ods for deriva-tive seed ma-nip-u-la-tion i n AD-flow are Underfull \hbox (badness 5431) in paragraph at lines 4362--4363 \T1/pcr/m/n/10 computeJacobianVectorProductFwd \T1/ptm/m/n/10 and \T1/pcr/m/n/1 0 computeJacobianVectorProductBwd\T1/ptm/m/n/10 , both lo-cated Underfull \hbox (badness 10000) in paragraph at lines 4382--4383 []\T1/ptm/m/n/10 The re-verse mas-ter (\T1/pcr/m/n/10 master_b\T1/ptm/m/n/10 ) rou-tine is wrapped by a thin wrap-per which is the [69] [70] (./mdolab-adflow.ind [71] [72] Underfull \hbox (badness 10000) in paragraph at lines 9--10 []\T1/pcr/m/n/10 addFunction() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ad-flow.pyADflow .ADFLOW Underfull \hbox (badness 10000) in paragraph at lines 10--11 []\T1/pcr/m/n/10 addFunctions() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ad-flow.pyADflo w.ADFLOW Underfull \hbox (badness 10000) in paragraph at lines 11--12 []\T1/pcr/m/n/10 addIntegrationSurface() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ad- Underfull \hbox (badness 10000) in paragraph at lines 12--13 []\T1/pcr/m/n/10 addLiftDistribution() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ad- Underfull \hbox (badness 10000) in paragraph at lines 14--15 []\T1/pcr/m/n/10 addUserFunction() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ad-flow.pyAD flow.ADFLOW Underfull \hbox (badness 10000) in paragraph at lines 16--17 []\T1/pcr/m/n/10 advanceTimeStepCounter() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ad- Underfull \hbox (badness 10000) in paragraph at lines 21--23 []\T1/pcr/m/n/10 computeJacobianVectorProductBwd() \T1/ptm/m/n/10 (\T1/ptm/m/it /10 ad- Underfull \hbox (badness 10000) in paragraph at lines 23--25 []\T1/pcr/m/n/10 computeJacobianVectorProductFwd() \T1/ptm/m/n/10 (\T1/ptm/m/it /10 ad- Underfull \hbox (badness 10000) in paragraph at lines 25--27 []\T1/pcr/m/n/10 computeStabilityParameters() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 a d- Underfull \hbox (badness 10000) in paragraph at lines 27--28 []\T1/pcr/m/n/10 createSlaveAeroProblem() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ad- Underfull \hbox (badness 10000) in paragraph at lines 31--32 []\T1/pcr/m/n/10 evalFunctions() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ad-flow.pyADfl ow.ADFLOW Underfull \hbox (badness 10000) in paragraph at lines 37--38 []\T1/pcr/m/n/10 getAdjointResNorms() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ad- Underfull \hbox (badness 10000) in paragraph at lines 38--39 []\T1/pcr/m/n/10 getAdjointStateSize() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ad- Underfull \hbox (badness 10000) in paragraph at lines 40--41 []\T1/pcr/m/n/10 getHeatFluxes() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ad-flow.pyADfl ow.ADFLOW Underfull \hbox (badness 10000) in paragraph at lines 41--42 []\T1/pcr/m/n/10 getPointSetName() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ad-flow.pyAD flow.ADFLOW Underfull \hbox (badness 10000) in paragraph at lines 42--43 []\T1/pcr/m/n/10 getResidual() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ad-flow.pyADflow .ADFLOW Underfull \hbox (badness 10000) in paragraph at lines 43--44 []\T1/pcr/m/n/10 getResNorms() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ad-flow.pyADflow .ADFLOW Underfull \hbox (badness 10000) in paragraph at lines 44--45 []\T1/pcr/m/n/10 getSolution() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ad-flow.pyADflow .ADFLOW Underfull \hbox (badness 10000) in paragraph at lines 45--46 []\T1/pcr/m/n/10 getSolverMeshIndices() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ad- Underfull \hbox (badness 10000) in paragraph at lines 46--47 []\T1/pcr/m/n/10 getSpatialPerturbation() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ad- Underfull \hbox (badness 10000) in paragraph at lines 47--48 []\T1/pcr/m/n/10 getSpatialSize() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ad-flow.pyADf low.ADFLOW Underfull \hbox (badness 10000) in paragraph at lines 48--49 []\T1/pcr/m/n/10 getStatePerturbation() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ad- Underfull \hbox (badness 10000) in paragraph at lines 50--51 []\T1/pcr/m/n/10 getStateSize() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ad-flow.pyADflo w.ADFLOW Underfull \hbox (badness 10000) in paragraph at lines 51--52 []\T1/pcr/m/n/10 getSurfaceConnectivity() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ad- Underfull \hbox (badness 10000) in paragraph at lines 52--53 []\T1/pcr/m/n/10 getSurfacePerturbation() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ad- Underfull \hbox (badness 7631) in paragraph at lines 53--54 []\T1/pcr/m/n/10 getSurfacePoints() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ad-flow.pyA Dflow.ADFLOW Underfull \hbox (badness 10000) in paragraph at lines 54--56 []\T1/pcr/m/n/10 getUniqueSpatialPerturbationNorm() Underfull \hbox (badness 10000) in paragraph at lines 56--57 []\T1/pcr/m/n/10 globalAdjointPreCon() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ad- Underfull \hbox (badness 10000) in paragraph at lines 57--58 []\T1/pcr/m/n/10 globalNKPreCon() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ad-flow.pyADf low.ADFLOW [73] Underfull \hbox (badness 10000) in paragraph at lines 65--66 []\T1/pcr/m/n/10 propagateUncertainty() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ad- Underfull \hbox (badness 10000) in paragraph at lines 69--70 []\T1/pcr/m/n/10 releaseAdjointMemory() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ad- Underfull \hbox (badness 10000) in paragraph at lines 70--71 []\T1/pcr/m/n/10 resetAdjoint() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ad-flow.pyADflo w.ADFLOW Underfull \hbox (badness 10000) in paragraph at lines 77--78 []\T1/pcr/m/n/10 setAeroProblem() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ad-flow.pyADf low.ADFLOW Underfull \hbox (badness 7631) in paragraph at lines 78--79 []\T1/pcr/m/n/10 setDisplacements() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ad-flow.pyA Dflow.ADFLOW Underfull \hbox (badness 10000) in paragraph at lines 81--82 []\T1/pcr/m/n/10 setResNorms() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ad-flow.pyADflow .ADFLOW Underfull \hbox (badness 10000) in paragraph at lines 82--83 []\T1/pcr/m/n/10 setRotationRate() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ad-flow.pyAD flow.ADFLOW Underfull \hbox (badness 10000) in paragraph at lines 84--85 []\T1/pcr/m/n/10 setSurfaceCoordinates() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ad- Underfull \hbox (badness 10000) in paragraph at lines 85--86 []\T1/pcr/m/n/10 setTargetCp() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ad-flow.pyADflow .ADFLOW Underfull \hbox (badness 10000) in paragraph at lines 86--87 []\T1/pcr/m/n/10 setWallTemperature() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ad- Underfull \hbox (badness 10000) in paragraph at lines 87--88 []\T1/pcr/m/n/10 solveAdjointForRHS() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ad- Underfull \hbox (badness 7631) in paragraph at lines 91--92 []\T1/pcr/m/n/10 solveTargetFuncs() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ad-flow.pyA Dflow.ADFLOW Underfull \hbox (badness 10000) in paragraph at lines 92--93 []\T1/pcr/m/n/10 solveTimeStep() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ad-flow.pyADfl ow.ADFLOW Underfull \hbox (badness 10000) in paragraph at lines 93--94 []\T1/pcr/m/n/10 solveTrimCL() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ad-flow.pyADflow .ADFLOW Underfull \hbox (badness 10000) in paragraph at lines 97--98 []\T1/pcr/m/n/10 updateGeometryInfo() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ad- Underfull \hbox (badness 10000) in paragraph at lines 101--102 []\T1/pcr/m/n/10 writeForceFile() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ad-flow.pyADf low.ADFLOW Underfull \hbox (badness 10000) in paragraph at lines 102--104 []\T1/pcr/m/n/10 writeLiftDistributionFile() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ad - Underfull \hbox (badness 10000) in paragraph at lines 104--105 []\T1/pcr/m/n/10 writeMeshFile() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ad-flow.pyADfl ow.ADFLOW Underfull \hbox (badness 10000) in paragraph at lines 105--106 []\T1/pcr/m/n/10 writeSlicesFile() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ad-flow.pyAD flow.ADFLOW Underfull \hbox (badness 10000) in paragraph at lines 106--107 []\T1/pcr/m/n/10 writeSolution() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ad-flow.pyADfl ow.ADFLOW Underfull \hbox (badness 10000) in paragraph at lines 107--109 []\T1/pcr/m/n/10 writeSurfaceSensitivity() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ad- Underfull \hbox (badness 10000) in paragraph at lines 109--111 []\T1/pcr/m/n/10 writeSurfaceSolutionFile() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ad- Underfull \hbox (badness 10000) in paragraph at lines 111--113 []\T1/pcr/m/n/10 writeSurfaceSolutionFileTecplot() \T1/ptm/m/n/10 (\T1/ptm/m/it /10 ad- Underfull \hbox (badness 10000) in paragraph at lines 113--115 []\T1/pcr/m/n/10 writeVolumeSolutionFile() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ad- [74]) (./mdolab-adflow.aux) ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on mdolab-adflow.pdf (78 pages, 333723 bytes). Transcript written on mdolab-adflow.log. Latexmk: Index file 'mdolab-adflow.idx' was written Latexmk: Log file says output to 'mdolab-adflow.pdf' Latexmk: All targets (mdolab-adflow.pdf) are up-to-date [rtd-command-info] start-time: 2020-06-25T20:55:40.318064Z, end-time: 2020-06-25T20:55:40.518388Z, duration: 0, exit-code: 0 mv -f /home/docs/checkouts/readthedocs.org/user_builds/mdolab-adflow/checkouts/latest/doc/_build/latex/mdolab-adflow.pdf /home/docs/checkouts/readthedocs.org/user_builds/mdolab-adflow/artifacts/latest/sphinx_pdf/mdolab-adflow.pdf [rtd-command-info] start-time: 2020-06-25T20:55:40.712806Z, end-time: 2020-06-25T20:55:44.025708Z, duration: 3, exit-code: 0 python sphinx-build -T -b epub -d _build/doctrees-epub -D language=en . _build/epub Running Sphinx v1.8.5 loading translations [en]... done making output directory... building [mo]: targets for 0 po files that are out of date building [epub]: targets for 11 source files that are out of date updating environment: 11 added, 0 changed, 0 removed reading sources... 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[100%] tutorial generating indices... genindex writing additional pages... copying static files... done copying extra files... done WARNING: conf value "version" should not be empty for EPUB3 writing mimetype file... writing META-INF/container.xml file... writing content.opf file... WARNING: unknown mimetype for _static/README.md, ignoring writing nav.xhtml file... writing toc.ncx file... writing ADflow.epub file... build succeeded, 2 warnings. The ePub file is in _build/epub. [rtd-command-info] start-time: 2020-06-25T20:55:44.148387Z, end-time: 2020-06-25T20:55:44.346622Z, duration: 0, exit-code: 0 mv -f /home/docs/checkouts/readthedocs.org/user_builds/mdolab-adflow/checkouts/latest/doc/_build/epub/ADflow.epub /home/docs/checkouts/readthedocs.org/user_builds/mdolab-adflow/artifacts/latest/sphinx_epub/mdolab-adflow.epub