Read the Docs build information
Build id: 341390
Project: iiasa-energy-program-message-ix
Version: latest
Commit: 42a8a087407582e40ef1be71ad8ef48c74d4e7e5
Date: 2020-06-08T16:38:19.060607Z
State: finished
Success: True


[rtd-command-info] start-time: 2020-06-08T16:40:48.426996Z, end-time: 2020-06-08T16:40:54.891560Z, duration: 6, exit-code: 0
git clone --no-single-branch --depth 50 https://github.com/iiasa/message_ix.git .
Cloning into '.'...

[rtd-command-info] start-time: 2020-06-08T16:40:55.333718Z, end-time: 2020-06-08T16:40:55.720945Z, duration: 0, exit-code: 0
git checkout --force origin/master
Note: checking out 'origin/master'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by performing another checkout.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -b with the checkout command again. Example:

  git checkout -b <new-branch-name>

HEAD is now at 42a8a08 Merge pull request #356 from francescolovat/issue-355

[rtd-command-info] start-time: 2020-06-08T16:40:55.832108Z, end-time: 2020-06-08T16:40:56.124546Z, duration: 0, exit-code: 0
git clean -d -f -f


[rtd-command-info] start-time: 2020-06-08T16:41:00.784968Z, end-time: 2020-06-08T16:41:17.528444Z, duration: 16, exit-code: 0
python3.7 -mvirtualenv  
Using base prefix '/home/docs/.pyenv/versions/3.7.3'
New python executable in /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/bin/python3.7
Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/bin/python
Installing setuptools, pip, wheel...
done.

[rtd-command-info] start-time: 2020-06-08T16:41:17.770011Z, end-time: 2020-06-08T16:41:18.611138Z, duration: 0, exit-code: 0
python -m pip install --upgrade --no-cache-dir pip
Requirement already up-to-date: pip in /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.7/site-packages (20.1.1)

[rtd-command-info] start-time: 2020-06-08T16:41:18.882194Z, end-time: 2020-06-08T16:41:33.986477Z, duration: 15, exit-code: 0
python -m pip install --upgrade --no-cache-dir Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1
Collecting Pygments==2.3.1
  Downloading Pygments-2.3.1-py2.py3-none-any.whl (849 kB)
Collecting setuptools==41.0.1
  Downloading setuptools-41.0.1-py2.py3-none-any.whl (575 kB)
Collecting docutils==0.14
  Downloading docutils-0.14-py3-none-any.whl (543 kB)
Collecting mock==1.0.1
  Downloading mock-1.0.1.tar.gz (818 kB)
Collecting pillow==5.4.1
  Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB)
Collecting alabaster!=0.7.5,<0.8,>=0.7
  Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB)
Collecting commonmark==0.8.1
  Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB)
Collecting recommonmark==0.5.0
  Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB)
Collecting sphinx<2
  Downloading Sphinx-1.8.5-py2.py3-none-any.whl (3.1 MB)
Collecting sphinx-rtd-theme<0.5
  Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB)
Collecting readthedocs-sphinx-ext<1.1
  Downloading readthedocs_sphinx_ext-1.0.4-py2.py3-none-any.whl (28 kB)
Collecting future
  Downloading future-0.18.2.tar.gz (829 kB)
Collecting packaging
  Downloading packaging-20.4-py2.py3-none-any.whl (37 kB)
Collecting snowballstemmer>=1.1
  Downloading snowballstemmer-2.0.0-py2.py3-none-any.whl (97 kB)
Collecting six>=1.5
  Downloading six-1.15.0-py2.py3-none-any.whl (10 kB)
Collecting Jinja2>=2.3
  Downloading Jinja2-2.11.2-py2.py3-none-any.whl (125 kB)
Collecting babel!=2.0,>=1.3
  Downloading Babel-2.8.0-py2.py3-none-any.whl (8.6 MB)
Collecting sphinxcontrib-websupport
  Downloading sphinxcontrib_websupport-1.2.2-py2.py3-none-any.whl (39 kB)
Collecting imagesize
  Downloading imagesize-1.2.0-py2.py3-none-any.whl (4.8 kB)
Collecting requests>=2.0.0
  Downloading requests-2.23.0-py2.py3-none-any.whl (58 kB)
Collecting pyparsing>=2.0.2
  Downloading pyparsing-2.4.7-py2.py3-none-any.whl (67 kB)
Collecting MarkupSafe>=0.23
  Downloading MarkupSafe-1.1.1-cp37-cp37m-manylinux1_x86_64.whl (27 kB)
Collecting pytz>=2015.7
  Downloading pytz-2020.1-py2.py3-none-any.whl (510 kB)
Collecting chardet<4,>=3.0.2
  Downloading chardet-3.0.4-py2.py3-none-any.whl (133 kB)
Collecting certifi>=2017.4.17
  Downloading certifi-2020.4.5.2-py2.py3-none-any.whl (157 kB)
Collecting idna<3,>=2.5
  Downloading idna-2.9-py2.py3-none-any.whl (58 kB)
Collecting urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1
  Downloading urllib3-1.25.9-py2.py3-none-any.whl (126 kB)
Building wheels for collected packages: mock, future
  Building wheel for mock (setup.py): started
  Building wheel for mock (setup.py): finished with status 'done'
  Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23754 sha256=9e535f8e82c854f3732b9f04dbba8933abc817674c1d60e2cf8b3bc9ff7da473
  Stored in directory: /tmp/pip-ephem-wheel-cache-ypwt2lyw/wheels/16/03/37/f0a64ab894c9102906f192db1a4071b7592292ad661563c69b
  Building wheel for future (setup.py): started
  Building wheel for future (setup.py): finished with status 'done'
  Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491058 sha256=276ef1c05f2a8c483cbb9032c3d553e2555227869fc549d44024266016d1d447
  Stored in directory: /tmp/pip-ephem-wheel-cache-ypwt2lyw/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0
Successfully built mock future
Installing collected packages: Pygments, setuptools, docutils, mock, pillow, alabaster, future, commonmark, pyparsing, six, packaging, snowballstemmer, MarkupSafe, Jinja2, pytz, babel, sphinxcontrib-websupport, imagesize, chardet, certifi, idna, urllib3, requests, sphinx, recommonmark, sphinx-rtd-theme, readthedocs-sphinx-ext
  Attempting uninstall: setuptools
    Found existing installation: setuptools 47.1.1
    Uninstalling setuptools-47.1.1:
      Successfully uninstalled setuptools-47.1.1
Successfully installed Jinja2-2.11.2 MarkupSafe-1.1.1 Pygments-2.3.1 alabaster-0.7.12 babel-2.8.0 certifi-2020.4.5.2 chardet-3.0.4 commonmark-0.8.1 docutils-0.14 future-0.18.2 idna-2.9 imagesize-1.2.0 mock-1.0.1 packaging-20.4 pillow-5.4.1 pyparsing-2.4.7 pytz-2020.1 readthedocs-sphinx-ext-1.0.4 recommonmark-0.5.0 requests-2.23.0 setuptools-41.0.1 six-1.15.0 snowballstemmer-2.0.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-websupport-1.2.2 urllib3-1.25.9

[rtd-command-info] start-time: 2020-06-08T16:41:34.657457Z, end-time: 2020-06-08T16:42:16.907519Z, duration: 42, exit-code: 0
python -m pip install --exists-action=w --no-cache-dir -r ci/pip-requirements.txt
Collecting ixmp
  Cloning git://github.com/iiasa/ixmp.git (to revision master) to /tmp/pip-install-4vv7oamj/ixmp
  Running command git clone -q git://github.com/iiasa/ixmp.git /tmp/pip-install-4vv7oamj/ixmp
Collecting JPype1>=0.7.5
  Downloading JPype1-0.7.5-cp37-cp37m-manylinux2010_x86_64.whl (3.6 MB)
Collecting pyam-iamc
  Cloning git://github.com/IAMconsortium/pyam.git (to revision v0.6.0) to /tmp/pip-install-4vv7oamj/pyam-iamc
  Running command git clone -q git://github.com/IAMconsortium/pyam.git /tmp/pip-install-4vv7oamj/pyam-iamc
  Running command git checkout -q 0c88f2c0a7ea774794230948af9392043221edbe
Collecting click
  Downloading click-7.1.2-py2.py3-none-any.whl (82 kB)
Collecting dask[array]>=2.14
  Downloading dask-2.18.0-py3-none-any.whl (822 kB)
Collecting graphviz
  Downloading graphviz-0.14-py2.py3-none-any.whl (18 kB)
Collecting pandas>=1.0
  Downloading pandas-1.0.4-cp37-cp37m-manylinux1_x86_64.whl (10.1 MB)
Collecting pint
  Downloading Pint-0.12-py2.py3-none-any.whl (192 kB)
Collecting PyYAML
  Downloading PyYAML-5.3.1.tar.gz (269 kB)
Collecting xarray
  Downloading xarray-0.15.1-py3-none-any.whl (668 kB)
Collecting xlrd
  Downloading xlrd-1.2.0-py2.py3-none-any.whl (103 kB)
Collecting xlsxwriter
  Downloading XlsxWriter-1.2.9-py2.py3-none-any.whl (141 kB)
Collecting argparse
  Downloading argparse-1.4.0-py2.py3-none-any.whl (23 kB)
Collecting iam-units>=2020.4.12
  Downloading iam_units-2020.4.21-py3-none-any.whl (28 kB)
Collecting numpy
  Downloading numpy-1.18.5-cp37-cp37m-manylinux1_x86_64.whl (20.1 MB)
Requirement already satisfied: requests in /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.7/site-packages (from pyam-iamc->-r ci/pip-requirements.txt (line 9)) (2.23.0)
Collecting matplotlib<=3.0.2
  Downloading matplotlib-3.0.2-cp37-cp37m-manylinux1_x86_64.whl (12.9 MB)
Collecting seaborn
  Downloading seaborn-0.10.1-py3-none-any.whl (215 kB)
Requirement already satisfied: six in /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.7/site-packages (from pyam-iamc->-r ci/pip-requirements.txt (line 9)) (1.15.0)
Collecting toolz>=0.8.2; extra == "array"
  Downloading toolz-0.10.0.tar.gz (49 kB)
Collecting python-dateutil>=2.6.1
  Downloading python_dateutil-2.8.1-py2.py3-none-any.whl (227 kB)
Requirement already satisfied: pytz>=2017.2 in /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.7/site-packages (from pandas>=1.0->ixmp->-r ci/pip-requirements.txt (line 2)) (2020.1)
Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.7/site-packages (from pint->ixmp->-r ci/pip-requirements.txt (line 2)) (41.0.1)
Requirement already satisfied: idna<3,>=2.5 in /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.7/site-packages (from requests->pyam-iamc->-r ci/pip-requirements.txt (line 9)) (2.9)
Requirement already satisfied: chardet<4,>=3.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.7/site-packages (from requests->pyam-iamc->-r ci/pip-requirements.txt (line 9)) (3.0.4)
Requirement already satisfied: urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 in /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.7/site-packages (from requests->pyam-iamc->-r ci/pip-requirements.txt (line 9)) (1.25.9)
Requirement already satisfied: certifi>=2017.4.17 in /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.7/site-packages (from requests->pyam-iamc->-r ci/pip-requirements.txt (line 9)) (2020.4.5.2)
Collecting kiwisolver>=1.0.1
  Downloading kiwisolver-1.2.0-cp37-cp37m-manylinux1_x86_64.whl (88 kB)
Requirement already satisfied: pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.1 in /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.7/site-packages (from matplotlib<=3.0.2->pyam-iamc->-r ci/pip-requirements.txt (line 9)) (2.4.7)
Collecting cycler>=0.10
  Downloading cycler-0.10.0-py2.py3-none-any.whl (6.5 kB)
Collecting scipy>=1.0.1
  Downloading scipy-1.4.1-cp37-cp37m-manylinux1_x86_64.whl (26.1 MB)
Building wheels for collected packages: ixmp, pyam-iamc, PyYAML, toolz
  Building wheel for ixmp (setup.py): started
  Building wheel for ixmp (setup.py): finished with status 'done'
  Created wheel for ixmp: filename=ixmp-3.0.1.dev1+g9ec1394-py3-none-any.whl size=16686580 sha256=fd5afd331a404f4ee70f224f155d68bf34608f4f46db48ce70f63bac3971e4e0
  Stored in directory: /tmp/pip-ephem-wheel-cache-0u5wp_x9/wheels/10/c2/32/20872c37f2e336117b27064de22eb8dc7ac979fa67df10b83e
  Building wheel for pyam-iamc (setup.py): started
  Building wheel for pyam-iamc (setup.py): finished with status 'done'
  Created wheel for pyam-iamc: filename=pyam_iamc-0.6.0-py2.py3-none-any.whl size=64775 sha256=6fa80d7087084ec0da51053eee53ab7d33d4bb76a45df8b486c0d297665c0a14
  Stored in directory: /tmp/pip-ephem-wheel-cache-0u5wp_x9/wheels/5a/6f/dd/c84bdd1ac8ddec30ff0a27b1849530dc3a6fab490b4c16a697
  Building wheel for PyYAML (setup.py): started
  Building wheel for PyYAML (setup.py): finished with status 'done'
  Created wheel for PyYAML: filename=PyYAML-5.3.1-cp37-cp37m-linux_x86_64.whl size=44619 sha256=f1e71a208f580c956d7d1bf4f01cf2658fbe1244114e11ce8060dc06e883dc96
  Stored in directory: /tmp/pip-ephem-wheel-cache-0u5wp_x9/wheels/5e/03/1e/e1e954795d6f35dfc7b637fe2277bff021303bd9570ecea653
  Building wheel for toolz (setup.py): started
  Building wheel for toolz (setup.py): finished with status 'done'
  Created wheel for toolz: filename=toolz-0.10.0-py3-none-any.whl size=55575 sha256=a0c5db2e448f465785fdcfe285bcf0604bab5e4bf0ae52aa816248798399eea2
  Stored in directory: /tmp/pip-ephem-wheel-cache-0u5wp_x9/wheels/e2/83/7c/248063997a4f9ff6bf145822e620e8c37117a6b4c765584077
Successfully built ixmp pyam-iamc PyYAML toolz
ERROR: xarray 0.15.1 has requirement setuptools>=41.2, but you'll have setuptools 41.0.1 which is incompatible.
Installing collected packages: JPype1, click, PyYAML, toolz, numpy, dask, graphviz, python-dateutil, pandas, pint, xarray, xlrd, xlsxwriter, ixmp, argparse, iam-units, kiwisolver, cycler, matplotlib, scipy, seaborn, pyam-iamc
Successfully installed JPype1-0.7.5 PyYAML-5.3.1 argparse-1.4.0 click-7.1.2 cycler-0.10.0 dask-2.18.0 graphviz-0.14 iam-units-2020.4.21 ixmp-3.0.1.dev1+g9ec1394 kiwisolver-1.2.0 matplotlib-3.0.2 numpy-1.18.5 pandas-1.0.4 pint-0.12 pyam-iamc-0.6.0 python-dateutil-2.8.1 scipy-1.4.1 seaborn-0.10.1 toolz-0.10.0 xarray-0.15.1 xlrd-1.2.0 xlsxwriter-1.2.9

[rtd-command-info] start-time: 2020-06-08T16:42:17.015282Z, end-time: 2020-06-08T16:42:30.009145Z, duration: 12, exit-code: 0
python -m pip install --upgrade --upgrade-strategy eager --no-cache-dir .[docs]
Processing /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/checkouts/latest
Requirement already up-to-date: click in /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.7/site-packages (from message-ix==3.0.2.dev4+g42a8a08) (7.1.2)
Requirement already up-to-date: ixmp>=3.0.0 in /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.7/site-packages (from message-ix==3.0.2.dev4+g42a8a08) (3.0.1.dev1+g9ec1394)
Requirement already up-to-date: numpy in /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.7/site-packages (from message-ix==3.0.2.dev4+g42a8a08) (1.18.5)
Requirement already up-to-date: pandas in /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.7/site-packages (from message-ix==3.0.2.dev4+g42a8a08) (1.0.4)
Requirement already up-to-date: PyYAML in /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.7/site-packages (from message-ix==3.0.2.dev4+g42a8a08) (5.3.1)
Requirement already up-to-date: xlrd in /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.7/site-packages (from message-ix==3.0.2.dev4+g42a8a08) (1.2.0)
Collecting numpydoc
  Downloading numpydoc-1.0.0-py3-none-any.whl (47 kB)
Collecting sphinx>=3.0
  Downloading Sphinx-3.1.0-py3-none-any.whl (2.9 MB)
Requirement already up-to-date: sphinx_rtd_theme in /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.7/site-packages (from message-ix==3.0.2.dev4+g42a8a08) (0.4.3)
Collecting sphinxcontrib-bibtex
  Downloading sphinxcontrib_bibtex-1.0.0-py3-none-any.whl (14 kB)
Requirement already up-to-date: xarray in /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.7/site-packages (from ixmp>=3.0.0->message-ix==3.0.2.dev4+g42a8a08) (0.15.1)
Requirement already up-to-date: JPype1>=0.7.5 in /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.7/site-packages (from ixmp>=3.0.0->message-ix==3.0.2.dev4+g42a8a08) (0.7.5)
Requirement already up-to-date: pint in /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.7/site-packages (from ixmp>=3.0.0->message-ix==3.0.2.dev4+g42a8a08) (0.12)
Requirement already up-to-date: graphviz in /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.7/site-packages (from ixmp>=3.0.0->message-ix==3.0.2.dev4+g42a8a08) (0.14)
Requirement already up-to-date: xlsxwriter in /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.7/site-packages (from ixmp>=3.0.0->message-ix==3.0.2.dev4+g42a8a08) (1.2.9)
Requirement already up-to-date: dask[array]>=2.14 in /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.7/site-packages (from ixmp>=3.0.0->message-ix==3.0.2.dev4+g42a8a08) (2.18.0)
Requirement already up-to-date: python-dateutil>=2.6.1 in /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.7/site-packages (from pandas->message-ix==3.0.2.dev4+g42a8a08) (2.8.1)
Requirement already up-to-date: pytz>=2017.2 in /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.7/site-packages (from pandas->message-ix==3.0.2.dev4+g42a8a08) (2020.1)
Requirement already up-to-date: Jinja2>=2.3 in /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.7/site-packages (from numpydoc->message-ix==3.0.2.dev4+g42a8a08) (2.11.2)
Collecting Pygments>=2.0
  Downloading Pygments-2.6.1-py3-none-any.whl (914 kB)
Requirement already up-to-date: imagesize in /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.7/site-packages (from sphinx>=3.0->message-ix==3.0.2.dev4+g42a8a08) (1.2.0)
Collecting sphinxcontrib-applehelp
  Downloading sphinxcontrib_applehelp-1.0.2-py2.py3-none-any.whl (121 kB)
Requirement already up-to-date: packaging in /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.7/site-packages (from sphinx>=3.0->message-ix==3.0.2.dev4+g42a8a08) (20.4)
Collecting sphinxcontrib-htmlhelp
  Downloading sphinxcontrib_htmlhelp-1.0.3-py2.py3-none-any.whl (96 kB)
Collecting sphinxcontrib-serializinghtml
  Downloading sphinxcontrib_serializinghtml-1.1.4-py2.py3-none-any.whl (89 kB)
Collecting sphinxcontrib-qthelp
  Downloading sphinxcontrib_qthelp-1.0.3-py2.py3-none-any.whl (90 kB)
Requirement already up-to-date: babel>=1.3 in /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.7/site-packages (from sphinx>=3.0->message-ix==3.0.2.dev4+g42a8a08) (2.8.0)
Requirement already up-to-date: requests>=2.5.0 in /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.7/site-packages (from sphinx>=3.0->message-ix==3.0.2.dev4+g42a8a08) (2.23.0)
Requirement already up-to-date: alabaster<0.8,>=0.7 in /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.7/site-packages (from sphinx>=3.0->message-ix==3.0.2.dev4+g42a8a08) (0.7.12)
Requirement already up-to-date: snowballstemmer>=1.1 in /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.7/site-packages (from sphinx>=3.0->message-ix==3.0.2.dev4+g42a8a08) (2.0.0)
Collecting sphinxcontrib-jsmath
  Downloading sphinxcontrib_jsmath-1.0.1-py2.py3-none-any.whl (5.1 kB)
Collecting docutils>=0.12
  Downloading docutils-0.16-py2.py3-none-any.whl (548 kB)
Collecting setuptools
  Downloading setuptools-47.1.1-py3-none-any.whl (583 kB)
Collecting sphinxcontrib-devhelp
  Downloading sphinxcontrib_devhelp-1.0.2-py2.py3-none-any.whl (84 kB)
Collecting pybtex>=0.20
  Downloading pybtex-0.22.2-py2.py3-none-any.whl (279 kB)
Collecting oset>=0.1.3
  Downloading oset-0.1.3.tar.gz (7.3 kB)
Collecting pybtex-docutils>=0.2.0
  Downloading pybtex_docutils-0.2.2-py2.py3-none-any.whl (4.6 kB)
Requirement already up-to-date: toolz>=0.8.2; extra == "array" in /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.7/site-packages (from dask[array]>=2.14->ixmp>=3.0.0->message-ix==3.0.2.dev4+g42a8a08) (0.10.0)
Requirement already up-to-date: six>=1.5 in /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.7/site-packages (from python-dateutil>=2.6.1->pandas->message-ix==3.0.2.dev4+g42a8a08) (1.15.0)
Requirement already up-to-date: MarkupSafe>=0.23 in /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.7/site-packages (from Jinja2>=2.3->numpydoc->message-ix==3.0.2.dev4+g42a8a08) (1.1.1)
Requirement already up-to-date: pyparsing>=2.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.7/site-packages (from packaging->sphinx>=3.0->message-ix==3.0.2.dev4+g42a8a08) (2.4.7)
Requirement already up-to-date: chardet<4,>=3.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.7/site-packages (from requests>=2.5.0->sphinx>=3.0->message-ix==3.0.2.dev4+g42a8a08) (3.0.4)
Requirement already up-to-date: certifi>=2017.4.17 in /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.7/site-packages (from requests>=2.5.0->sphinx>=3.0->message-ix==3.0.2.dev4+g42a8a08) (2020.4.5.2)
Requirement already up-to-date: urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 in /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.7/site-packages (from requests>=2.5.0->sphinx>=3.0->message-ix==3.0.2.dev4+g42a8a08) (1.25.9)
Requirement already up-to-date: idna<3,>=2.5 in /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.7/site-packages (from requests>=2.5.0->sphinx>=3.0->message-ix==3.0.2.dev4+g42a8a08) (2.9)
Collecting latexcodec>=1.0.4
  Downloading latexcodec-2.0.0-py2.py3-none-any.whl (17 kB)
Building wheels for collected packages: message-ix, oset
  Building wheel for message-ix (setup.py): started
  Building wheel for message-ix (setup.py): finished with status 'done'
  Created wheel for message-ix: filename=message_ix-3.0.2.dev4+g42a8a08-py3-none-any.whl size=218269 sha256=7fbcbf322fdd31d04b97e8fcd0693bfe47c8a399c74ca4e42bc72e733808e2e7
  Stored in directory: /tmp/pip-ephem-wheel-cache-ssus8z9e/wheels/d0/db/a2/e255e2e896accb1a909485f26133cec7f8bf1a3d84907b4081
  Building wheel for oset (setup.py): started
  Building wheel for oset (setup.py): finished with status 'done'
  Created wheel for oset: filename=oset-0.1.3-py3-none-any.whl size=9660 sha256=8d76e4cbde5b01e072bbcd5728bec5d42e92e05b9913fbc3c6660824f4b04c08
  Stored in directory: /tmp/pip-ephem-wheel-cache-ssus8z9e/wheels/d3/97/cf/cfafe0bedac445a9492baca15b27f8afb4693182b00a975ac7
Successfully built message-ix oset
Installing collected packages: Pygments, sphinxcontrib-applehelp, sphinxcontrib-htmlhelp, sphinxcontrib-serializinghtml, sphinxcontrib-qthelp, sphinxcontrib-jsmath, docutils, setuptools, sphinxcontrib-devhelp, sphinx, numpydoc, latexcodec, pybtex, oset, pybtex-docutils, sphinxcontrib-bibtex, message-ix
  Attempting uninstall: Pygments
    Found existing installation: Pygments 2.3.1
    Uninstalling Pygments-2.3.1:
      Successfully uninstalled Pygments-2.3.1
  Attempting uninstall: docutils
    Found existing installation: docutils 0.14
    Uninstalling docutils-0.14:
      Successfully uninstalled docutils-0.14
  Attempting uninstall: setuptools
    Found existing installation: setuptools 41.0.1
    Uninstalling setuptools-41.0.1:
      Successfully uninstalled setuptools-41.0.1
  Attempting uninstall: sphinx
    Found existing installation: Sphinx 1.8.5
    Uninstalling Sphinx-1.8.5:
      Successfully uninstalled Sphinx-1.8.5
Successfully installed Pygments-2.6.1 docutils-0.16 latexcodec-2.0.0 message-ix-3.0.2.dev4+g42a8a08 numpydoc-1.0.0 oset-0.1.3 pybtex-0.22.2 pybtex-docutils-0.2.2 setuptools-47.1.1 sphinx-3.1.0 sphinxcontrib-applehelp-1.0.2 sphinxcontrib-bibtex-1.0.0 sphinxcontrib-devhelp-1.0.2 sphinxcontrib-htmlhelp-1.0.3 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-qthelp-1.0.3 sphinxcontrib-serializinghtml-1.1.4

[rtd-command-info] start-time: 2020-06-08T16:42:31.629916Z, end-time: 2020-06-08T16:42:31.883679Z, duration: 0, exit-code: 0
cat doc/source/conf.py
# Configuration file for the Sphinx documentation builder.
#
# This file only contains a selection of the most common options. For a full
# list see the documentation:
# https://www.sphinx-doc.org/en/master/usage/configuration.html

# -- Path setup --------------------------------------------------------------

# If extensions (or modules to document with autodoc) are in another directory,
# add these directories to sys.path here. If the directory is relative to the
# documentation root, use os.path.abspath to make it absolute, like shown here.

import os
from pathlib import Path
import sys

from pkg_resources import get_distribution

sys.path.insert(0, os.path.abspath('..'))


# -- Project information -----------------------------------------------------

project = 'MESSAGEix'
copyright = '2020, IIASA Energy Program'
author = 'MESSAGEix Developers'

# The major project version, used as the replacement for |version|.
version = get_distribution("message_ix").version
# The full project version, used as the replacement for |release| and e.g. in
# the HTML templates.
release = version


# -- General configuration ----------------------------------------------------

# Add any Sphinx extension module names here, as strings. They can be
# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
# ones.
extensions = [
    'sphinx.ext.autodoc',
    'sphinx.ext.doctest',
    'sphinx.ext.extlinks',
    'sphinx.ext.intersphinx',
    'sphinx.ext.todo',
    'sphinx.ext.coverage',
    'sphinx.ext.mathjax',
    'sphinxcontrib.bibtex',
    'sphinx.ext.autosummary',
    'sphinx.ext.napoleon',
    'grab_gams_doc'
]

# Add any paths that contain templates here, relative to this directory.
templates_path = ['_templates']

# List of patterns, relative to source directory, that match files and
# directories to ignore when looking for source files.
exclude_patterns = ['_themes/*']


# A string of reStructuredText that will be included at the beginning of every
# source file that is read.
rst_prolog = r"""
.. |MESSAGEix| replace:: MESSAGE\ :emphasis:`ix`

.. |ixmp| replace:: :emphasis:`ix modeling platform`

.. role:: strike

.. role:: underline

"""

# -- Options for HTML output ----------------------------------------------

# The theme to use for HTML and HTML Help pages.  See the documentation for
# a list of builtin themes.
html_theme = 'sphinx_rtd_theme'

# A list of CSS files.
html_css_files = ["custom.css"]

# The name of an image file (relative to this directory) to place at the top
# of the sidebar.
html_logo = '_static/logo_white.png'

# Add any paths that contain custom static files (such as style sheets) here,
# relative to this directory. They are copied after the builtin static files,
# so a file named "default.css" will overwrite the builtin "default.css".
html_static_path = ['_static']

# -- Options for LaTeX output -------------------------------------------------

# The LaTeX engine to build the docs.
latex_engine = 'lualatex'


# -- Options for sphinx.ext.extlinks ------------------------------------------

extlinks = {
    'pull': ("https://github.com/iiasa/message_ix/pull/%s", 'PR #'),
}


# -- Options for sphinx.ext.intersphinx ---------------------------------------

intersphinx_mapping = {
    'dask': ('https://docs.dask.org/en/stable/', None),
    'ixmp': ('https://message.iiasa.ac.at/projects/ixmp/en/latest/', None),
    # For a local build, uncomment and use the following line with a path to
    # the directory containing built HTML documentation for ixmp:
    # 'ixmp': ('/home/user/path-to-ixmp/doc/build/html', None),
    'pandas': ('https://pandas.pydata.org/pandas-docs/stable/', None),
    'pint': ('https://pint.readthedocs.io/en/stable/', None),
    'pyam': ('https://pyam-iamc.readthedocs.io/en/stable/', None),
    'python': ('https://docs.python.org/3/', None),
}


# -- Options for sphinx.ext.todo ----------------------------------------------

# If true, `todo` and `todoList` produce output, else they produce nothing.
todo_include_todos = True


# -- Options for grab_gams_doc ------------------------------------------------

gams_source_dir = Path(__file__).parents[2] / 'message_ix' / 'model'
gams_target_dir = 'model'




###########################################################################
#          auto-created readthedocs.org specific configuration            #
###########################################################################


#
# The following code was added during an automated build on readthedocs.org
# It is auto created and injected for every build. The result is based on the
# conf.py.tmpl file found in the readthedocs.org codebase:
# https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl
#


import importlib
import sys
import os.path
from six import string_types

from sphinx import version_info

# Get suffix for proper linking to GitHub
# This is deprecated in Sphinx 1.3+,
# as each page can have its own suffix
if globals().get('source_suffix', False):
    if isinstance(source_suffix, string_types):
        SUFFIX = source_suffix
    elif isinstance(source_suffix, (list, tuple)):
        # Sphinx >= 1.3 supports list/tuple to define multiple suffixes
        SUFFIX = source_suffix[0]
    elif isinstance(source_suffix, dict):
        # Sphinx >= 1.8 supports a mapping dictionary for multiple suffixes
        SUFFIX = list(source_suffix.keys())[0]  # make a ``list()`` for py2/py3 compatibility
    else:
        # default to .rst
        SUFFIX = '.rst'
else:
    SUFFIX = '.rst'

# Add RTD Static Path. Add to the end because it overwrites previous files.
if not 'html_static_path' in globals():
    html_static_path = []
if os.path.exists('_static'):
    html_static_path.append('_static')

# Add RTD Theme only if they aren't overriding it already
using_rtd_theme = (
    (
        'html_theme' in globals() and
        html_theme in ['default'] and
        # Allow people to bail with a hack of having an html_style
        'html_style' not in globals()
    ) or 'html_theme' not in globals()
)
if using_rtd_theme:
    theme = importlib.import_module('sphinx_rtd_theme')
    html_theme = 'sphinx_rtd_theme'
    html_style = None
    html_theme_options = {}
    if 'html_theme_path' in globals():
        html_theme_path.append(theme.get_html_theme_path())
    else:
        html_theme_path = [theme.get_html_theme_path()]

if globals().get('websupport2_base_url', False):
    websupport2_base_url = 'https://readthedocs.com/websupport'
    websupport2_static_url = 'https://assets.readthedocs.com/'


#Add project information to the template context.
context = {
    'using_theme': using_rtd_theme,
    'html_theme': html_theme,
    'current_version': "latest",
    'version_slug': "latest",
    'MEDIA_URL': "https://media.readthedocs.com/media/",
    'STATIC_URL': "https://assets.readthedocs.com/",
    'PRODUCTION_DOMAIN': "readthedocs.com",
    'versions': [
    ("master", "/en/master/"),
    ("latest", "/en/latest/"),
    ("stable", "/en/stable/"),
    ("v2.0.0", "/en/v2.0.0/"),
    ("2.x", "/en/2.x/"),
    ("2.0.x", "/en/2.0.x/"),
    ("v1.2.0", "/en/v1.2.0/"),
    ("1.2.x", "/en/1.2.x/"),
    ("v1.1.0", "/en/v1.1.0/"),
    ("mm-document", "/en/mm-document/"),
    ],
    'downloads': [ 
    ],
    'subprojects': [ 
        ("iiasa-energy-program-ixmp", "https://message.iiasa.ac.at/projects/ixmp/en/stable/"),
        ("iiasa-energy-program-message-doc", "https://message.iiasa.ac.at/projects/global/en/latest/"),
    ],
    'slug': 'iiasa-energy-program-message-ix',
    'name': u'message_ix',
    'rtd_language': u'en',
    'programming_language': u'words',
    'canonical_url': 'https://message.iiasa.ac.at/en/stable/',
    'analytics_code': 'UA-134631150-1',
    'single_version': False,
    'conf_py_path': '/doc/source/',
    'api_host': 'https://readthedocs.com',
    'github_user': 'iiasa',
    'proxied_api_host': '/_',
    'github_repo': 'message_ix',
    'github_version': 'master',
    'display_github': True,
    'bitbucket_user': 'None',
    'bitbucket_repo': 'None',
    'bitbucket_version': 'master',
    'display_bitbucket': False,
    'gitlab_user': 'None',
    'gitlab_repo': 'None',
    'gitlab_version': 'master',
    'display_gitlab': False,
    'READTHEDOCS': True,
    'using_theme': (html_theme == "default"),
    'new_theme': (html_theme == "sphinx_rtd_theme"),
    'source_suffix': SUFFIX,
    'ad_free': False,
    'user_analytics_code': 'UA-134631150-1',
    'global_analytics_code': 'UA-17997319-2',
    'commit': '42a8a087',
}




if 'html_context' in globals():
    
    html_context.update(context)
    
else:
    html_context = context

# Add custom RTD extension
if 'extensions' in globals():
    # Insert at the beginning because it can interfere
    # with other extensions.
    # See https://github.com/rtfd/readthedocs.org/pull/4054
    extensions.insert(0, "readthedocs_ext.readthedocs")
else:
    extensions = ["readthedocs_ext.readthedocs"]

# Add External version warning banner to the external version documentation
if 'branch' == 'external':
    extensions.insert(1, "readthedocs_ext.external_version_warning")

project_language = 'en'

# User's Sphinx configurations
language_user = globals().get('language', None)
latex_engine_user = globals().get('latex_engine', None)
latex_elements_user = globals().get('latex_elements', None)

# Remove this once xindy gets installed in Docker image and XINDYOPS
# env variable is supported
# https://github.com/rtfd/readthedocs-docker-images/pull/98
latex_use_xindy = False

chinese = any([
    language_user in ('zh_CN', 'zh_TW'),
    project_language in ('zh_CN', 'zh_TW'),
])

japanese = any([
    language_user == 'ja',
    project_language == 'ja',
])

if chinese:
    latex_engine = latex_engine_user or 'xelatex'

    latex_elements_rtd = {
        'preamble': '\\usepackage[UTF8]{ctex}\n',
    }
    latex_elements = latex_elements_user or latex_elements_rtd
elif japanese:
    latex_engine = latex_engine_user or 'platex'

[rtd-command-info] start-time: 2020-06-08T16:42:32.047729Z, end-time: 2020-06-08T16:43:20.891625Z, duration: 48, exit-code: 0
python sphinx-build -T -E -b readthedocs -d _build/doctrees-readthedocs -D language=en . _build/html
Running Sphinx v3.1.0
loading translations [en]... done
making output directory... done
generating GAMS sources... [  4%] MACRO_run
generating GAMS sources... [  8%] MESSAGE-MACRO_run
generating GAMS sources... [ 13%] MESSAGE_master
generating GAMS sources... [ 17%] version
generating GAMS sources... [ 21%] MESSAGE_run
generating GAMS sources... [ 26%] includes/aux_computation_time
generating GAMS sources... [ 30%] includes/period_parameter_assignment
generating GAMS sources... [ 34%] MACRO/macro_data_load
generating GAMS sources... [ 39%] MACRO/macro_calibration
generating GAMS sources... [ 43%] MACRO/macro_solve
generating GAMS sources... [ 47%] MACRO/macro_core
generating GAMS sources... [ 52%] MACRO/macro_reporting
generating GAMS sources... [ 56%] MESSAGE/sets_maps_def
generating GAMS sources... [ 60%] MESSAGE/model_solve
generating GAMS sources... [ 65%] MESSAGE/version_check
generating GAMS sources... [ 69%] MESSAGE/scaling_investment_costs
generating GAMS sources... [ 73%] MESSAGE/auxiliary_settings
generating GAMS sources... [ 78%] MESSAGE/data_load
generating GAMS sources... [ 82%] MESSAGE/reporting_for_MACRO
generating GAMS sources... [ 86%] MESSAGE/model_core
generating GAMS sources... [ 91%] MESSAGE/reporting
generating GAMS sources... [ 95%] MESSAGE/parameter_def
generating GAMS sources... [100%] MESSAGE/model_setup

loading intersphinx inventory from https://docs.dask.org/en/stable/objects.inv...
loading intersphinx inventory from https://message.iiasa.ac.at/projects/ixmp/en/latest/objects.inv...
loading intersphinx inventory from https://pandas.pydata.org/pandas-docs/stable/objects.inv...
loading intersphinx inventory from https://pint.readthedocs.io/en/stable/objects.inv...
loading intersphinx inventory from https://pyam-iamc.readthedocs.io/en/stable/objects.inv...
loading intersphinx inventory from https://docs.python.org/3/objects.inv...
building [mo]: targets for 0 po files that are out of date
building [readthedocs]: targets for 24 source files that are out of date
updating environment: [new config] 24 added, 0 changed, 0 removed
reading sources... [  4%] api
reading sources... [  8%] bibliography
checking for /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/checkouts/latest/doc/source/bibs/main.bib in bibtex cache... not found
parsing bibtex file /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/checkouts/latest/doc/source/bibs/main.bib... parsed 6 entries
reading sources... [ 12%] contributing
reading sources... [ 16%] debugging
reading sources... [ 20%] efficiency
reading sources... [ 25%] faq
reading sources... [ 29%] framework
reading sources... [ 33%] getting_started
reading sources... [ 37%] index
reading sources... [ 41%] macro
reading sources... [ 45%] model/MACRO/macro_core
reading sources... [ 50%] model/MESSAGE-MACRO_run
reading sources... [ 54%] model/MESSAGE/model_core
reading sources... [ 58%] model/MESSAGE/model_solve
reading sources... [ 62%] model/MESSAGE/parameter_def
reading sources... [ 66%] model/MESSAGE/reporting
reading sources... [ 70%] model/MESSAGE/scaling_investment_costs
reading sources... [ 75%] model/MESSAGE/sets_maps_def
reading sources... [ 79%] model/MESSAGE_run
reading sources... [ 83%] notice
reading sources... [ 87%] reporting
reading sources... [ 91%] tools/add_year
reading sources... [ 95%] tutorials
reading sources... [100%] whatsnew

/home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.7/importlib/_bootstrap.py:219: RuntimeWarning: numpy.ufunc size changed, may indicate binary incompatibility. Expected 192 from C header, got 216 from PyObject
  return f(*args, **kwds)
/home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.7/importlib/_bootstrap.py:219: RuntimeWarning: numpy.ufunc size changed, may indicate binary incompatibility. Expected 192 from C header, got 216 from PyObject
  return f(*args, **kwds)
/home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.7/importlib/_bootstrap.py:219: RuntimeWarning: numpy.ufunc size changed, may indicate binary incompatibility. Expected 192 from C header, got 216 from PyObject
  return f(*args, **kwds)
/home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/checkouts/latest/doc/source/api.rst.rst:33: WARNING: autosummary: failed to import ixmp.testing.make_dantzig
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
writing output... [  4%] api
writing output... [  8%] bibliography
writing output... [ 12%] contributing
writing output... [ 16%] debugging
writing output... [ 20%] efficiency
writing output... [ 25%] faq
writing output... [ 29%] framework
writing output... [ 33%] getting_started
writing output... [ 37%] index
writing output... [ 41%] macro
writing output... [ 45%] model/MACRO/macro_core
writing output... [ 50%] model/MESSAGE-MACRO_run
writing output... [ 54%] model/MESSAGE/model_core
writing output... [ 58%] model/MESSAGE/model_solve
writing output... [ 62%] model/MESSAGE/parameter_def
writing output... [ 66%] model/MESSAGE/reporting
writing output... [ 70%] model/MESSAGE/scaling_investment_costs
writing output... [ 75%] model/MESSAGE/sets_maps_def
writing output... [ 79%] model/MESSAGE_run
writing output... [ 83%] notice
writing output... [ 87%] reporting
writing output... [ 91%] tools/add_year
writing output... [ 95%] tutorials
writing output... [100%] whatsnew

generating indices...  genindex py-modindexdone
writing additional pages...  searchdone
copying images... [ 33%] _static/ix_components.png
copying images... [ 66%] _static/ix_features.png
copying images... [100%] model/MESSAGE/../../_static/storage.png

copying static files... ... done
copying readthedocs static files... done
copying searchtools... done
copying extra files... done
dumping search index in English (code: en)... done
dumping object inventory... done
build succeeded, 1 warning.

The HTML pages are in _build/html.