Read the Docs build information
Build id: 334029
Project: tiledb-inc-tiledb-py
Version: 0.6.1
Commit: 4f77642516e99900f020e2ba9e7413bcf246700a
Date: 2020-05-21T01:39:17.244303Z
State: finished
Success: False


[rtd-command-info] start-time: 2020-05-21T01:39:24.620578Z, end-time: 2020-05-21T01:39:29.514830Z, duration: 4, exit-code: 0
git clone --no-single-branch --depth 50 https://github.com/TileDB-Inc/TileDB-Py.git .
Cloning into '.'...

[rtd-command-info] start-time: 2020-05-21T01:39:29.888129Z, end-time: 2020-05-21T01:39:30.092056Z, duration: 0, exit-code: 0
git checkout --force 4f77642516e99900f020e2ba9e7413bcf246700a
Note: checking out '4f77642516e99900f020e2ba9e7413bcf246700a'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by performing another checkout.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -b with the checkout command again. Example:

  git checkout -b <new-branch-name>

HEAD is now at 4f77642 Bump Dockerfile for 0.6.1

[rtd-command-info] start-time: 2020-05-21T01:39:30.203838Z, end-time: 2020-05-21T01:39:30.398848Z, duration: 0, exit-code: 0
git clean -d -f -f


[rtd-command-info] start-time: 2020-05-21T01:39:32.134670Z, end-time: 2020-05-21T01:39:43.862714Z, duration: 11, exit-code: 0
python3.7 -mvirtualenv  
Using base prefix '/home/docs/.pyenv/versions/3.7.3'
New python executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/0.6.1/bin/python3.7
Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/0.6.1/bin/python
Installing setuptools, pip, wheel...
done.

[rtd-command-info] start-time: 2020-05-21T01:39:44.031636Z, end-time: 2020-05-21T01:39:44.826819Z, duration: 0, exit-code: 0
python -m pip install --upgrade --no-cache-dir pip
Requirement already up-to-date: pip in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/0.6.1/lib/python3.7/site-packages (20.1.1)

[rtd-command-info] start-time: 2020-05-21T01:39:45.208861Z, end-time: 2020-05-21T01:39:54.998213Z, duration: 9, exit-code: 0
python -m pip install --upgrade --no-cache-dir Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1
Collecting Pygments==2.3.1
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Collecting pillow==5.4.1
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Collecting MarkupSafe>=0.23
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Building wheels for collected packages: mock, future
  Building wheel for mock (setup.py): started
  Building wheel for mock (setup.py): finished with status 'done'
  Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23754 sha256=57a9d3199ce40b11213739e76679db7d19a101ba8ce20d0bc2abd7a8fe7c028d
  Stored in directory: /tmp/pip-ephem-wheel-cache-prn3ootb/wheels/16/03/37/f0a64ab894c9102906f192db1a4071b7592292ad661563c69b
  Building wheel for future (setup.py): started
  Building wheel for future (setup.py): finished with status 'done'
  Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491058 sha256=cd951c1767ee84a7c113443c98f4700b104fadee9eb5f03c7b12b93b1a09d25c
  Stored in directory: /tmp/pip-ephem-wheel-cache-prn3ootb/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0
Successfully built mock future
Installing collected packages: Pygments, setuptools, docutils, mock, pillow, alabaster, future, commonmark, imagesize, six, certifi, chardet, urllib3, idna, requests, pyparsing, packaging, pytz, babel, sphinxcontrib-websupport, snowballstemmer, MarkupSafe, Jinja2, sphinx, recommonmark, sphinx-rtd-theme, readthedocs-sphinx-ext
  Attempting uninstall: setuptools
    Found existing installation: setuptools 46.4.0
    Uninstalling setuptools-46.4.0:
      Successfully uninstalled setuptools-46.4.0
Successfully installed Jinja2-2.11.2 MarkupSafe-1.1.1 Pygments-2.3.1 alabaster-0.7.12 babel-2.8.0 certifi-2020.4.5.1 chardet-3.0.4 commonmark-0.8.1 docutils-0.14 future-0.18.2 idna-2.9 imagesize-1.2.0 mock-1.0.1 packaging-20.4 pillow-5.4.1 pyparsing-2.4.7 pytz-2020.1 readthedocs-sphinx-ext-1.0.3 recommonmark-0.5.0 requests-2.23.0 setuptools-41.0.1 six-1.14.0 snowballstemmer-2.0.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-websupport-1.2.2 urllib3-1.25.9

[rtd-command-info] start-time: 2020-05-21T01:39:55.138748Z, end-time: 2020-05-21T01:40:13.099554Z, duration: 17, exit-code: 0
python -m pip install --exists-action=w --no-cache-dir -r requirements.txt
Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/0.6.1/lib/python3.7/site-packages (from -r requirements.txt (line 1)) (41.0.1)
Requirement already satisfied: wheel in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/0.6.1/lib/python3.7/site-packages (from -r requirements.txt (line 2)) (0.34.2)
Collecting numpy==1.16.*
  Downloading numpy-1.16.6-cp37-cp37m-manylinux1_x86_64.whl (17.3 MB)
Collecting tox
  Downloading tox-3.15.1-py2.py3-none-any.whl (82 kB)
Collecting setuptools-scm
  Downloading setuptools_scm-3.5.0-py2.py3-none-any.whl (26 kB)
Collecting cython
  Downloading Cython-0.29.19-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB)
Collecting dask
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Collecting pandas
  Downloading pandas-1.0.3-cp37-cp37m-manylinux1_x86_64.whl (10.0 MB)
Collecting psutil
  Downloading psutil-5.7.0.tar.gz (449 kB)
Requirement already satisfied: packaging>=14 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/0.6.1/lib/python3.7/site-packages (from tox->-r requirements.txt (line 4)) (20.4)
Collecting filelock>=3.0.0
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Collecting pluggy>=0.12.0
  Downloading pluggy-0.13.1-py2.py3-none-any.whl (18 kB)
Collecting virtualenv!=20.0.0,!=20.0.1,!=20.0.2,!=20.0.3,!=20.0.4,!=20.0.5,!=20.0.6,!=20.0.7,>=16.0.0
  Downloading virtualenv-20.0.21-py2.py3-none-any.whl (4.7 MB)
Collecting toml>=0.9.4
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Collecting py>=1.4.17
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Collecting importlib-metadata<2,>=0.12; python_version < "3.8"
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Requirement already satisfied: six>=1.14.0 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/0.6.1/lib/python3.7/site-packages (from tox->-r requirements.txt (line 4)) (1.14.0)
Requirement already satisfied: pytz>=2017.2 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/0.6.1/lib/python3.7/site-packages (from pandas->-r requirements.txt (line 8)) (2020.1)
Collecting python-dateutil>=2.6.1
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Requirement already satisfied: pyparsing>=2.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/0.6.1/lib/python3.7/site-packages (from packaging>=14->tox->-r requirements.txt (line 4)) (2.4.7)
Collecting appdirs<2,>=1.4.3
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Collecting distlib<1,>=0.3.0
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Collecting zipp>=0.5
  Downloading zipp-3.1.0-py3-none-any.whl (4.9 kB)
Building wheels for collected packages: psutil, distlib
  Building wheel for psutil (setup.py): started
  Building wheel for psutil (setup.py): finished with status 'done'
  Created wheel for psutil: filename=psutil-5.7.0-cp37-cp37m-linux_x86_64.whl size=276462 sha256=0c12a5292e0d3e9f7be19749e475ef5348eb4239a43d6a11d0adf41e508013cc
  Stored in directory: /tmp/pip-ephem-wheel-cache-ylltlw37/wheels/b6/e7/50/aee9cc966163d74430f13f208171dee22f11efa4a4a826661c
  Building wheel for distlib (setup.py): started
  Building wheel for distlib (setup.py): finished with status 'done'
  Created wheel for distlib: filename=distlib-0.3.0-py3-none-any.whl size=340427 sha256=765c22be56d5bb8f65353abd61cf216e50a5746b1fe2dff89c07963d86fbbb5f
  Stored in directory: /tmp/pip-ephem-wheel-cache-ylltlw37/wheels/a2/19/da/a15d4e2bedf3062c739b190d5cb5b7b2ecfbccb6b0d93c861b
Successfully built psutil distlib
Installing collected packages: numpy, filelock, zipp, importlib-metadata, pluggy, appdirs, distlib, virtualenv, toml, py, tox, setuptools-scm, cython, dask, python-dateutil, pandas, psutil
Successfully installed appdirs-1.4.4 cython-0.29.19 dask-2.16.0 distlib-0.3.0 filelock-3.0.12 importlib-metadata-1.6.0 numpy-1.16.6 pandas-1.0.3 pluggy-0.13.1 psutil-5.7.0 py-1.8.1 python-dateutil-2.8.1 setuptools-scm-3.5.0 toml-0.10.1 tox-3.15.1 virtualenv-20.0.21 zipp-3.1.0

[rtd-command-info] start-time: 2020-05-21T01:40:13.270475Z, end-time: 2020-05-21T01:40:16.334458Z, duration: 3, exit-code: 1
python ./setup.py install --force
setup.py sys.argv is:  ['./setup.py', 'install', '--force']
TILEDB_PATH from env: ''
libtiledb_exists checking 'library_dirs': []
libtiledb_exists found: 'None'
running install
running bdist_egg
GNU Make 4.1
Built for x86_64-pc-linux-gnu
Copyright (C) 1988-2014 Free Software Foundation, Inc.
License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>
This is free software: you are free to change and redistribute it.
There is NO WARRANTY, to the extent permitted by law.
ext_modules:  [<setuptools.extension.Extension('tiledb.libtiledb') at 0x7f6018df8780>, <setuptools.extension.Extension('tiledb.core') at 0x7f6016cc63c8>]
tiledb_ext:  <setuptools.extension.Extension('tiledb.libtiledb') at 0x7f6018df8780>
core_ext:  <setuptools.extension.Extension('tiledb.core') at 0x7f6016cc63c8>
tiledb_ext.library_dirs:  []
libtiledb_exists checking 'library_dirs': []
libtiledb_exists found: 'None'
Downloading TileDB package from 2.0.2...
Building libtiledb in directory /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/0.6.1/build/TileDB-2.0.2/build...
CMake configure command: ['cmake', '-DCMAKE_INSTALL_PREFIX=/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/0.6.1/build/TileDB-2.0.2/dist', '-DTILEDB_TESTS=OFF', '-DTILEDB_S3=ON', '-DTILEDB_HDFS=ON', '-DTILEDB_INSTALL_LIBDIR=lib', '-DTILEDB_CPP_API=ON', '-DTILEDB_LOG_OUTPUT_ON_FAILURE=ON', '-DTILEDB_FORCE_ALL_DEPS:BOOL=OFF', '-DTILEDB_SERIALIZATION:BOOL=OFF', '-DCMAKE_BUILD_TYPE=Release', '/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/0.6.1/build/TileDB-2.0.2']
/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/0.6.1/lib/python3.7/site-packages/setuptools_scm/git.py:68: UserWarning: "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/0.6.1" is shallow and may cause errors
  warnings.warn('"{}" is shallow and may cause errors'.format(wd.path))
error: [Errno 2] No such file or directory: 'cmake': 'cmake'