Read the Docs build information
Build id: 334019
Project: tiledb-inc-tiledb-py
Version: 0.6.1
Commit: 4f77642516e99900f020e2ba9e7413bcf246700a
Date: 2020-05-21T01:05:21.991346Z
State: finished
Success: False


[rtd-command-info] start-time: 2020-05-21T01:05:24.260642Z, end-time: 2020-05-21T01:05:27.737737Z, duration: 3, exit-code: 0
git clone --no-single-branch --depth 50 https://github.com/TileDB-Inc/TileDB-Py.git .
Cloning into '.'...

[rtd-command-info] start-time: 2020-05-21T01:05:28.148210Z, end-time: 2020-05-21T01:05:28.352555Z, duration: 0, exit-code: 0
git checkout --force 4f77642516e99900f020e2ba9e7413bcf246700a
Note: checking out '4f77642516e99900f020e2ba9e7413bcf246700a'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by performing another checkout.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -b with the checkout command again. Example:

  git checkout -b <new-branch-name>

HEAD is now at 4f77642 Bump Dockerfile for 0.6.1

[rtd-command-info] start-time: 2020-05-21T01:05:28.485289Z, end-time: 2020-05-21T01:05:28.683641Z, duration: 0, exit-code: 0
git clean -d -f -f


[rtd-command-info] start-time: 2020-05-21T01:05:30.276913Z, end-time: 2020-05-21T01:05:41.865660Z, duration: 11, exit-code: 0
python3.7 -mvirtualenv  
Using base prefix '/home/docs/.pyenv/versions/3.7.3'
New python executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/0.6.1/bin/python3.7
Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/0.6.1/bin/python
Installing setuptools, pip, wheel...
done.

[rtd-command-info] start-time: 2020-05-21T01:05:42.249531Z, end-time: 2020-05-21T01:05:43.063101Z, duration: 0, exit-code: 0
python -m pip install --upgrade --no-cache-dir pip
Requirement already up-to-date: pip in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/0.6.1/lib/python3.7/site-packages (20.1.1)

[rtd-command-info] start-time: 2020-05-21T01:05:43.198660Z, end-time: 2020-05-21T01:05:53.083220Z, duration: 9, exit-code: 0
python -m pip install --upgrade --no-cache-dir Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1
Collecting Pygments==2.3.1
  Downloading Pygments-2.3.1-py2.py3-none-any.whl (849 kB)
Collecting setuptools==41.0.1
  Downloading setuptools-41.0.1-py2.py3-none-any.whl (575 kB)
Collecting docutils==0.14
  Downloading docutils-0.14-py3-none-any.whl (543 kB)
Collecting mock==1.0.1
  Downloading mock-1.0.1.tar.gz (818 kB)
Collecting pillow==5.4.1
  Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB)
Collecting alabaster!=0.7.5,<0.8,>=0.7
  Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB)
Collecting commonmark==0.8.1
  Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB)
Collecting recommonmark==0.5.0
  Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB)
Collecting sphinx<2
  Downloading Sphinx-1.8.5-py2.py3-none-any.whl (3.1 MB)
Collecting sphinx-rtd-theme<0.5
  Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB)
Collecting readthedocs-sphinx-ext<1.1
  Downloading readthedocs_sphinx_ext-1.0.3-py2.py3-none-any.whl (28 kB)
Collecting future
  Downloading future-0.18.2.tar.gz (829 kB)
Collecting snowballstemmer>=1.1
  Downloading snowballstemmer-2.0.0-py2.py3-none-any.whl (97 kB)
Collecting imagesize
  Downloading imagesize-1.2.0-py2.py3-none-any.whl (4.8 kB)
Collecting packaging
  Downloading packaging-20.4-py2.py3-none-any.whl (37 kB)
Collecting Jinja2>=2.3
  Downloading Jinja2-2.11.2-py2.py3-none-any.whl (125 kB)
Collecting requests>=2.0.0
  Downloading requests-2.23.0-py2.py3-none-any.whl (58 kB)
Collecting six>=1.5
  Downloading six-1.14.0-py2.py3-none-any.whl (10 kB)
Collecting babel!=2.0,>=1.3
  Downloading Babel-2.8.0-py2.py3-none-any.whl (8.6 MB)
Collecting sphinxcontrib-websupport
  Downloading sphinxcontrib_websupport-1.2.2-py2.py3-none-any.whl (39 kB)
Collecting pyparsing>=2.0.2
  Downloading pyparsing-2.4.7-py2.py3-none-any.whl (67 kB)
Collecting MarkupSafe>=0.23
  Downloading MarkupSafe-1.1.1-cp37-cp37m-manylinux1_x86_64.whl (27 kB)
Collecting certifi>=2017.4.17
  Downloading certifi-2020.4.5.1-py2.py3-none-any.whl (157 kB)
Collecting chardet<4,>=3.0.2
  Downloading chardet-3.0.4-py2.py3-none-any.whl (133 kB)
Collecting idna<3,>=2.5
  Downloading idna-2.9-py2.py3-none-any.whl (58 kB)
Collecting urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1
  Downloading urllib3-1.25.9-py2.py3-none-any.whl (126 kB)
Collecting pytz>=2015.7
  Downloading pytz-2020.1-py2.py3-none-any.whl (510 kB)
Building wheels for collected packages: mock, future
  Building wheel for mock (setup.py): started
  Building wheel for mock (setup.py): finished with status 'done'
  Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23754 sha256=79be0da448e01fcf17fd1eae4ff8526b84a822b3ae4365365378e452e62e79d2
  Stored in directory: /tmp/pip-ephem-wheel-cache-8c3ittz8/wheels/16/03/37/f0a64ab894c9102906f192db1a4071b7592292ad661563c69b
  Building wheel for future (setup.py): started
  Building wheel for future (setup.py): finished with status 'done'
  Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491058 sha256=87e864b8e536cd5db1a1dd065641f60b59f3f573c5f3859c94e1a84f9524a2be
  Stored in directory: /tmp/pip-ephem-wheel-cache-8c3ittz8/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0
Successfully built mock future
Installing collected packages: Pygments, setuptools, docutils, mock, pillow, alabaster, future, commonmark, snowballstemmer, imagesize, pyparsing, six, packaging, MarkupSafe, Jinja2, certifi, chardet, idna, urllib3, requests, pytz, babel, sphinxcontrib-websupport, sphinx, recommonmark, sphinx-rtd-theme, readthedocs-sphinx-ext
  Attempting uninstall: setuptools
    Found existing installation: setuptools 46.4.0
    Uninstalling setuptools-46.4.0:
      Successfully uninstalled setuptools-46.4.0
Successfully installed Jinja2-2.11.2 MarkupSafe-1.1.1 Pygments-2.3.1 alabaster-0.7.12 babel-2.8.0 certifi-2020.4.5.1 chardet-3.0.4 commonmark-0.8.1 docutils-0.14 future-0.18.2 idna-2.9 imagesize-1.2.0 mock-1.0.1 packaging-20.4 pillow-5.4.1 pyparsing-2.4.7 pytz-2020.1 readthedocs-sphinx-ext-1.0.3 recommonmark-0.5.0 requests-2.23.0 setuptools-41.0.1 six-1.14.0 snowballstemmer-2.0.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-websupport-1.2.2 urllib3-1.25.9

[rtd-command-info] start-time: 2020-05-21T01:05:53.214367Z, end-time: 2020-05-21T01:06:13.667772Z, duration: 20, exit-code: 0
python -m pip install --exists-action=w --no-cache-dir -r requirements.txt
Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/0.6.1/lib/python3.7/site-packages (from -r requirements.txt (line 1)) (41.0.1)
Requirement already satisfied: wheel in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/0.6.1/lib/python3.7/site-packages (from -r requirements.txt (line 2)) (0.34.2)
Collecting numpy==1.16.*
  Downloading numpy-1.16.6-cp37-cp37m-manylinux1_x86_64.whl (17.3 MB)
Collecting tox
  Downloading tox-3.15.1-py2.py3-none-any.whl (82 kB)
Collecting setuptools-scm
  Downloading setuptools_scm-3.5.0-py2.py3-none-any.whl (26 kB)
Collecting cython
  Downloading Cython-0.29.19-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB)
Collecting dask
  Downloading dask-2.16.0-py3-none-any.whl (802 kB)
Collecting pandas
  Downloading pandas-1.0.3-cp37-cp37m-manylinux1_x86_64.whl (10.0 MB)
Collecting psutil
  Downloading psutil-5.7.0.tar.gz (449 kB)
Collecting virtualenv!=20.0.0,!=20.0.1,!=20.0.2,!=20.0.3,!=20.0.4,!=20.0.5,!=20.0.6,!=20.0.7,>=16.0.0
  Downloading virtualenv-20.0.21-py2.py3-none-any.whl (4.7 MB)
Collecting importlib-metadata<2,>=0.12; python_version < "3.8"
  Downloading importlib_metadata-1.6.0-py2.py3-none-any.whl (30 kB)
Collecting py>=1.4.17
  Downloading py-1.8.1-py2.py3-none-any.whl (83 kB)
Collecting filelock>=3.0.0
  Downloading filelock-3.0.12-py3-none-any.whl (7.6 kB)
Requirement already satisfied: packaging>=14 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/0.6.1/lib/python3.7/site-packages (from tox->-r requirements.txt (line 4)) (20.4)
Collecting toml>=0.9.4
  Downloading toml-0.10.1-py2.py3-none-any.whl (19 kB)
Requirement already satisfied: six>=1.14.0 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/0.6.1/lib/python3.7/site-packages (from tox->-r requirements.txt (line 4)) (1.14.0)
Collecting pluggy>=0.12.0
  Downloading pluggy-0.13.1-py2.py3-none-any.whl (18 kB)
Collecting python-dateutil>=2.6.1
  Downloading python_dateutil-2.8.1-py2.py3-none-any.whl (227 kB)
Requirement already satisfied: pytz>=2017.2 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/0.6.1/lib/python3.7/site-packages (from pandas->-r requirements.txt (line 8)) (2020.1)
Collecting distlib<1,>=0.3.0
  Downloading distlib-0.3.0.zip (571 kB)
Collecting appdirs<2,>=1.4.3
  Downloading appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
Collecting zipp>=0.5
  Downloading zipp-3.1.0-py3-none-any.whl (4.9 kB)
Requirement already satisfied: pyparsing>=2.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/0.6.1/lib/python3.7/site-packages (from packaging>=14->tox->-r requirements.txt (line 4)) (2.4.7)
Building wheels for collected packages: psutil, distlib
  Building wheel for psutil (setup.py): started
  Building wheel for psutil (setup.py): finished with status 'done'
  Created wheel for psutil: filename=psutil-5.7.0-cp37-cp37m-linux_x86_64.whl size=276482 sha256=38c23a86c8c62b001e8232aed8f575a18e86737778a68273e8f4aaa92f2a2b24
  Stored in directory: /tmp/pip-ephem-wheel-cache-7murc3ft/wheels/b6/e7/50/aee9cc966163d74430f13f208171dee22f11efa4a4a826661c
  Building wheel for distlib (setup.py): started
  Building wheel for distlib (setup.py): finished with status 'done'
  Created wheel for distlib: filename=distlib-0.3.0-py3-none-any.whl size=340427 sha256=924f5d118e977dc07790168a72c0e2f279d60f74af410a5930fa9c8227da598f
  Stored in directory: /tmp/pip-ephem-wheel-cache-7murc3ft/wheels/a2/19/da/a15d4e2bedf3062c739b190d5cb5b7b2ecfbccb6b0d93c861b
Successfully built psutil distlib
Installing collected packages: numpy, zipp, importlib-metadata, distlib, appdirs, filelock, virtualenv, py, toml, pluggy, tox, setuptools-scm, cython, dask, python-dateutil, pandas, psutil
Successfully installed appdirs-1.4.4 cython-0.29.19 dask-2.16.0 distlib-0.3.0 filelock-3.0.12 importlib-metadata-1.6.0 numpy-1.16.6 pandas-1.0.3 pluggy-0.13.1 psutil-5.7.0 py-1.8.1 python-dateutil-2.8.1 setuptools-scm-3.5.0 toml-0.10.1 tox-3.15.1 virtualenv-20.0.21 zipp-3.1.0

[rtd-command-info] start-time: 2020-05-21T01:06:13.865694Z, end-time: 2020-05-21T01:06:18.297364Z, duration: 4, exit-code: 1
python ./setup.py install --force
setup.py sys.argv is:  ['./setup.py', 'install', '--force']
TILEDB_PATH from env: ''
libtiledb_exists checking 'library_dirs': []
libtiledb_exists found: 'None'
running install
running bdist_egg
GNU Make 4.1
Built for x86_64-pc-linux-gnu
Copyright (C) 1988-2014 Free Software Foundation, Inc.
License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>
This is free software: you are free to change and redistribute it.
There is NO WARRANTY, to the extent permitted by law.
ext_modules:  [<setuptools.extension.Extension('tiledb.libtiledb') at 0x7fa53ed115f8>, <setuptools.extension.Extension('tiledb.core') at 0x7fa53cbde4a8>]
tiledb_ext:  <setuptools.extension.Extension('tiledb.libtiledb') at 0x7fa53ed115f8>
core_ext:  <setuptools.extension.Extension('tiledb.core') at 0x7fa53cbde4a8>
tiledb_ext.library_dirs:  []
libtiledb_exists checking 'library_dirs': []
libtiledb_exists found: 'None'
Downloading TileDB package from 2.0.2...
Building libtiledb in directory /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/0.6.1/build/TileDB-2.0.2/build...
CMake configure command: ['cmake', '-DCMAKE_INSTALL_PREFIX=/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/0.6.1/build/TileDB-2.0.2/dist', '-DTILEDB_TESTS=OFF', '-DTILEDB_S3=ON', '-DTILEDB_HDFS=ON', '-DTILEDB_INSTALL_LIBDIR=lib', '-DTILEDB_CPP_API=ON', '-DTILEDB_LOG_OUTPUT_ON_FAILURE=ON', '-DTILEDB_FORCE_ALL_DEPS:BOOL=OFF', '-DTILEDB_SERIALIZATION:BOOL=OFF', '-DCMAKE_BUILD_TYPE=Release', '/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/0.6.1/build/TileDB-2.0.2']
/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/0.6.1/lib/python3.7/site-packages/setuptools_scm/git.py:68: UserWarning: "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/0.6.1" is shallow and may cause errors
  warnings.warn('"{}" is shallow and may cause errors'.format(wd.path))
error: [Errno 2] No such file or directory: 'cmake': 'cmake'