Read the Docs build information
Build id: 332706
Project: tiledb-inc-tiledb-py
Version: latest
Commit: 3b35d1d0c4b3c108b7e99e50823a6c4f9c7950ed
Date: 2020-05-18T18:55:35.198811Z
State: finished
Success: False


[rtd-command-info] start-time: 2020-05-18T18:55:37.747213Z, end-time: 2020-05-18T18:55:38.842833Z, duration: 1, exit-code: 0
git clone --no-single-branch --depth 50 https://github.com/TileDB-Inc/TileDB-Py.git .
Cloning into '.'...

[rtd-command-info] start-time: 2020-05-18T18:55:39.244739Z, end-time: 2020-05-18T18:55:39.451711Z, duration: 0, exit-code: 0
git checkout --force origin/dev
Note: checking out 'origin/dev'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by performing another checkout.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -b with the checkout command again. Example:

  git checkout -b <new-branch-name>

HEAD is now at 3b35d1d Fix CI build on linux and windows

[rtd-command-info] start-time: 2020-05-18T18:55:39.557063Z, end-time: 2020-05-18T18:55:39.754740Z, duration: 0, exit-code: 0
git clean -d -f -f


[rtd-command-info] start-time: 2020-05-18T18:55:41.080176Z, end-time: 2020-05-18T18:55:44.935195Z, duration: 3, exit-code: 0
python3.7 -mvirtualenv  
Using base prefix '/home/docs/.pyenv/versions/3.7.3'
New python executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/bin/python3.7
Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/bin/python
Installing setuptools, pip, wheel...
done.

[rtd-command-info] start-time: 2020-05-18T18:55:45.173946Z, end-time: 2020-05-18T18:55:45.963468Z, duration: 0, exit-code: 0
python -m pip install --upgrade --no-cache-dir pip
Requirement already up-to-date: pip in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages (20.1)

[rtd-command-info] start-time: 2020-05-18T18:55:46.105424Z, end-time: 2020-05-18T18:55:55.408566Z, duration: 9, exit-code: 0
python -m pip install --upgrade --no-cache-dir Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1
Collecting Pygments==2.3.1
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Collecting pillow==5.4.1
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Collecting urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1
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Collecting MarkupSafe>=0.23
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Building wheels for collected packages: mock, future
  Building wheel for mock (setup.py): started
  Building wheel for mock (setup.py): finished with status 'done'
  Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23754 sha256=c068a006f0b3dc1621033864458a5d528822666a6139aa59334a3a1096f89319
  Stored in directory: /tmp/pip-ephem-wheel-cache-st18hdtb/wheels/16/03/37/f0a64ab894c9102906f192db1a4071b7592292ad661563c69b
  Building wheel for future (setup.py): started
  Building wheel for future (setup.py): finished with status 'done'
  Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491058 sha256=417512033189d1d4931ddc94ae54705bea2e98d0f0a2074e319a04d21a2cb149
  Stored in directory: /tmp/pip-ephem-wheel-cache-st18hdtb/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0
Successfully built mock future
Installing collected packages: Pygments, setuptools, docutils, mock, pillow, alabaster, future, commonmark, imagesize, snowballstemmer, pytz, babel, six, pyparsing, packaging, chardet, idna, certifi, urllib3, requests, MarkupSafe, Jinja2, sphinxcontrib-websupport, sphinx, recommonmark, sphinx-rtd-theme, readthedocs-sphinx-ext
  Attempting uninstall: setuptools
    Found existing installation: setuptools 46.4.0
    Uninstalling setuptools-46.4.0:
      Successfully uninstalled setuptools-46.4.0
Successfully installed Jinja2-2.11.2 MarkupSafe-1.1.1 Pygments-2.3.1 alabaster-0.7.12 babel-2.8.0 certifi-2020.4.5.1 chardet-3.0.4 commonmark-0.8.1 docutils-0.14 future-0.18.2 idna-2.9 imagesize-1.2.0 mock-1.0.1 packaging-20.3 pillow-5.4.1 pyparsing-2.4.7 pytz-2020.1 readthedocs-sphinx-ext-1.0.3 recommonmark-0.5.0 requests-2.23.0 setuptools-41.0.1 six-1.14.0 snowballstemmer-2.0.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-websupport-1.2.2 urllib3-1.25.9

[rtd-command-info] start-time: 2020-05-18T18:55:55.767589Z, end-time: 2020-05-18T18:56:08.948018Z, duration: 13, exit-code: 0
python -m pip install --exists-action=w --no-cache-dir -r requirements.txt
Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages (from -r requirements.txt (line 1)) (41.0.1)
Requirement already satisfied: wheel in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages (from -r requirements.txt (line 2)) (0.34.2)
Collecting numpy==1.16.*
  Downloading numpy-1.16.6-cp37-cp37m-manylinux1_x86_64.whl (17.3 MB)
Collecting tox
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Collecting setuptools-scm
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Collecting cython
  Downloading Cython-0.29.17-cp37-cp37m-manylinux1_x86_64.whl (2.1 MB)
Collecting dask
  Downloading dask-2.16.0-py3-none-any.whl (802 kB)
Collecting pandas
  Downloading pandas-1.0.3-cp37-cp37m-manylinux1_x86_64.whl (10.0 MB)
Collecting psutil
  Downloading psutil-5.7.0.tar.gz (449 kB)
Collecting pluggy<1,>=0.12.0
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Collecting py<2,>=1.4.17
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Collecting toml>=0.9.4
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Collecting filelock<4,>=3.0.0
  Downloading filelock-3.0.12-py3-none-any.whl (7.6 kB)
Collecting importlib-metadata<2,>=0.12; python_version < "3.8"
  Downloading importlib_metadata-1.6.0-py2.py3-none-any.whl (30 kB)
Collecting virtualenv!=20.0.0,!=20.0.1,!=20.0.2,!=20.0.3,!=20.0.4,!=20.0.5,!=20.0.6,!=20.0.7,>=16.0.0
  Downloading virtualenv-20.0.20-py2.py3-none-any.whl (4.7 MB)
Requirement already satisfied: six<2,>=1.14.0 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages (from tox->-r requirements.txt (line 4)) (1.14.0)
Requirement already satisfied: packaging>=14 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages (from tox->-r requirements.txt (line 4)) (20.3)
Collecting python-dateutil>=2.6.1
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Requirement already satisfied: pytz>=2017.2 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages (from pandas->-r requirements.txt (line 8)) (2020.1)
Collecting zipp>=0.5
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Collecting appdirs<2,>=1.4.3
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Requirement already satisfied: pyparsing>=2.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages (from packaging>=14->tox->-r requirements.txt (line 4)) (2.4.7)
Building wheels for collected packages: psutil, distlib
  Building wheel for psutil (setup.py): started
  Building wheel for psutil (setup.py): finished with status 'done'
  Created wheel for psutil: filename=psutil-5.7.0-cp37-cp37m-linux_x86_64.whl size=276452 sha256=8324dc93470875a1c7fa0de3da6a2744bec66b66ed392fa9f30851d19d8f8188
  Stored in directory: /tmp/pip-ephem-wheel-cache-c7vw2w7d/wheels/b6/e7/50/aee9cc966163d74430f13f208171dee22f11efa4a4a826661c
  Building wheel for distlib (setup.py): started
  Building wheel for distlib (setup.py): finished with status 'done'
  Created wheel for distlib: filename=distlib-0.3.0-py3-none-any.whl size=340427 sha256=8aa7c6ab678fd70150df2aac291b67a0788e78d3fddde3b29277973380b6ec57
  Stored in directory: /tmp/pip-ephem-wheel-cache-c7vw2w7d/wheels/a2/19/da/a15d4e2bedf3062c739b190d5cb5b7b2ecfbccb6b0d93c861b
Successfully built psutil distlib
Installing collected packages: numpy, zipp, importlib-metadata, pluggy, py, toml, filelock, distlib, appdirs, virtualenv, tox, setuptools-scm, cython, dask, python-dateutil, pandas, psutil
Successfully installed appdirs-1.4.4 cython-0.29.17 dask-2.16.0 distlib-0.3.0 filelock-3.0.12 importlib-metadata-1.6.0 numpy-1.16.6 pandas-1.0.3 pluggy-0.13.1 psutil-5.7.0 py-1.8.1 python-dateutil-2.8.1 setuptools-scm-3.5.0 toml-0.10.1 tox-3.15.0 virtualenv-20.0.20 zipp-3.1.0

[rtd-command-info] start-time: 2020-05-18T18:56:09.075799Z, end-time: 2020-05-18T18:56:12.782812Z, duration: 3, exit-code: 1
python ./setup.py install --force
setup.py sys.argv is:  ['./setup.py', 'install', '--force']
TILEDB_PATH from env: ''
libtiledb_exists checking 'library_dirs': []
libtiledb_exists found: 'None'
running install
running bdist_egg
GNU Make 4.1
Built for x86_64-pc-linux-gnu
Copyright (C) 1988-2014 Free Software Foundation, Inc.
License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>
This is free software: you are free to change and redistribute it.
There is NO WARRANTY, to the extent permitted by law.
ext_modules:  [<setuptools.extension.Extension('tiledb.libtiledb') at 0x7f373fe5c7f0>, <setuptools.extension.Extension('tiledb.core') at 0x7f373dd2a390>]
tiledb_ext:  <setuptools.extension.Extension('tiledb.libtiledb') at 0x7f373fe5c7f0>
core_ext:  <setuptools.extension.Extension('tiledb.core') at 0x7f373dd2a390>
tiledb_ext.library_dirs:  []
libtiledb_exists checking 'library_dirs': []
libtiledb_exists found: 'None'
Downloading TileDB package from 2.0.0...
Building libtiledb in directory /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.0.0/build...
CMake configure command: ['cmake', '-DCMAKE_INSTALL_PREFIX=/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.0.0/dist', '-DTILEDB_TESTS=OFF', '-DTILEDB_S3=ON', '-DTILEDB_HDFS=ON', '-DTILEDB_INSTALL_LIBDIR=lib', '-DTILEDB_CPP_API=ON', '-DTILEDB_LOG_OUTPUT_ON_FAILURE=ON', '-DTILEDB_FORCE_ALL_DEPS:BOOL=OFF', '-DTILEDB_SERIALIZATION:BOOL=OFF', '-DCMAKE_BUILD_TYPE=Release', '/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-2.0.0']
/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages/setuptools_scm/git.py:68: UserWarning: "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest" is shallow and may cause errors
  warnings.warn('"{}" is shallow and may cause errors'.format(wd.path))
error: [Errno 2] No such file or directory: 'cmake': 'cmake'