Read the Docs build information
Build id: 330024
Project: tiledb-inc-tiledb-py
Version: latest
Commit: 4b76c635d2a098c11ce7bec628b2758534a8c0ed
Date: 2020-05-12T20:00:51.735721Z
State: finished
Success: False


[rtd-command-info] start-time: 2020-05-12T20:00:54.343356Z, end-time: 2020-05-12T20:00:55.474800Z, duration: 1, exit-code: 0
git clone --no-single-branch --depth 50 https://github.com/TileDB-Inc/TileDB-Py.git .
Cloning into '.'...

[rtd-command-info] start-time: 2020-05-12T20:00:56.326083Z, end-time: 2020-05-12T20:00:56.530234Z, duration: 0, exit-code: 0
git checkout --force origin/dev
Note: checking out 'origin/dev'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by performing another checkout.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -b with the checkout command again. Example:

  git checkout -b <new-branch-name>

HEAD is now at 4b76c63 Fix offset handling w/ incompletes; implement var-len unpacking in C++

[rtd-command-info] start-time: 2020-05-12T20:00:56.646224Z, end-time: 2020-05-12T20:00:56.845403Z, duration: 0, exit-code: 0
git clean -d -f -f


[rtd-command-info] start-time: 2020-05-12T20:00:59.112324Z, end-time: 2020-05-12T20:01:02.828453Z, duration: 3, exit-code: 0
python3.7 -mvirtualenv  
Using base prefix '/home/docs/.pyenv/versions/3.7.3'
New python executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/bin/python3.7
Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/bin/python
Installing setuptools, pip, wheel...
done.

[rtd-command-info] start-time: 2020-05-12T20:01:03.250534Z, end-time: 2020-05-12T20:01:04.043666Z, duration: 0, exit-code: 0
python -m pip install --upgrade --no-cache-dir pip
Requirement already up-to-date: pip in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages (20.1)

[rtd-command-info] start-time: 2020-05-12T20:01:04.525445Z, end-time: 2020-05-12T20:01:13.773478Z, duration: 9, exit-code: 0
python -m pip install --upgrade --no-cache-dir Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1
Collecting Pygments==2.3.1
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Collecting MarkupSafe>=0.23
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Building wheels for collected packages: mock, future
  Building wheel for mock (setup.py): started
  Building wheel for mock (setup.py): finished with status 'done'
  Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23754 sha256=29429bd5cf2c84cb5aa659cc27999bbc74d0aa4feba324a50b680e62982ec7e1
  Stored in directory: /tmp/pip-ephem-wheel-cache-ro77eyrg/wheels/16/03/37/f0a64ab894c9102906f192db1a4071b7592292ad661563c69b
  Building wheel for future (setup.py): started
  Building wheel for future (setup.py): finished with status 'done'
  Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491058 sha256=5a78d4278bb7c098db0ba0d7a90d56d3e908f92d14fbc3f14cc4b27de8d78d69
  Stored in directory: /tmp/pip-ephem-wheel-cache-ro77eyrg/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0
Successfully built mock future
Installing collected packages: Pygments, setuptools, docutils, mock, pillow, alabaster, future, commonmark, six, imagesize, snowballstemmer, certifi, urllib3, chardet, idna, requests, sphinxcontrib-websupport, pyparsing, packaging, pytz, babel, MarkupSafe, Jinja2, sphinx, recommonmark, sphinx-rtd-theme, readthedocs-sphinx-ext
  Attempting uninstall: setuptools
    Found existing installation: setuptools 46.2.0
    Uninstalling setuptools-46.2.0:
      Successfully uninstalled setuptools-46.2.0
Successfully installed Jinja2-2.11.2 MarkupSafe-1.1.1 Pygments-2.3.1 alabaster-0.7.12 babel-2.8.0 certifi-2020.4.5.1 chardet-3.0.4 commonmark-0.8.1 docutils-0.14 future-0.18.2 idna-2.9 imagesize-1.2.0 mock-1.0.1 packaging-20.3 pillow-5.4.1 pyparsing-2.4.7 pytz-2020.1 readthedocs-sphinx-ext-1.0.3 recommonmark-0.5.0 requests-2.23.0 setuptools-41.0.1 six-1.14.0 snowballstemmer-2.0.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-websupport-1.2.2 urllib3-1.25.9

[rtd-command-info] start-time: 2020-05-12T20:01:14.050105Z, end-time: 2020-05-12T20:01:27.054846Z, duration: 13, exit-code: 0
python -m pip install --exists-action=w --no-cache-dir -r requirements.txt
Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages (from -r requirements.txt (line 1)) (41.0.1)
Requirement already satisfied: wheel in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages (from -r requirements.txt (line 2)) (0.34.2)
Collecting numpy==1.16.*
  Downloading numpy-1.16.6-cp37-cp37m-manylinux1_x86_64.whl (17.3 MB)
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Collecting cython
  Downloading Cython-0.29.17-cp37-cp37m-manylinux1_x86_64.whl (2.1 MB)
Collecting dask
  Downloading dask-2.16.0-py3-none-any.whl (802 kB)
Collecting pandas
  Downloading pandas-1.0.3-cp37-cp37m-manylinux1_x86_64.whl (10.0 MB)
Collecting psutil
  Downloading psutil-5.7.0.tar.gz (449 kB)
Collecting py<2,>=1.4.17
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Requirement already satisfied: six<2,>=1.14.0 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages (from tox->-r requirements.txt (line 4)) (1.14.0)
Collecting filelock<4,>=3.0.0
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Collecting pluggy<1,>=0.12.0
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Collecting virtualenv!=20.0.0,!=20.0.1,!=20.0.2,!=20.0.3,!=20.0.4,!=20.0.5,!=20.0.6,!=20.0.7,>=16.0.0
  Downloading virtualenv-20.0.20-py2.py3-none-any.whl (4.7 MB)
Collecting toml>=0.9.4
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Requirement already satisfied: packaging>=14 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages (from tox->-r requirements.txt (line 4)) (20.3)
Collecting importlib-metadata<2,>=0.12; python_version < "3.8"
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Requirement already satisfied: pytz>=2017.2 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages (from pandas->-r requirements.txt (line 8)) (2020.1)
Collecting python-dateutil>=2.6.1
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Requirement already satisfied: pyparsing>=2.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages (from packaging>=14->tox->-r requirements.txt (line 4)) (2.4.7)
Collecting zipp>=0.5
  Downloading zipp-3.1.0-py3-none-any.whl (4.9 kB)
Building wheels for collected packages: psutil, distlib
  Building wheel for psutil (setup.py): started
  Building wheel for psutil (setup.py): finished with status 'done'
  Created wheel for psutil: filename=psutil-5.7.0-cp37-cp37m-linux_x86_64.whl size=276460 sha256=018a00d8c104619fceccf26d0587c3d9f85d083b33b9766b2c3eda162358b082
  Stored in directory: /tmp/pip-ephem-wheel-cache-z90rk82o/wheels/b6/e7/50/aee9cc966163d74430f13f208171dee22f11efa4a4a826661c
  Building wheel for distlib (setup.py): started
  Building wheel for distlib (setup.py): finished with status 'done'
  Created wheel for distlib: filename=distlib-0.3.0-py3-none-any.whl size=340427 sha256=904c3b369ddd84e698a48824ae78f66b455e2494e5a741adc31a3813751391eb
  Stored in directory: /tmp/pip-ephem-wheel-cache-z90rk82o/wheels/a2/19/da/a15d4e2bedf3062c739b190d5cb5b7b2ecfbccb6b0d93c861b
Successfully built psutil distlib
Installing collected packages: numpy, py, filelock, zipp, importlib-metadata, pluggy, appdirs, distlib, virtualenv, toml, tox, setuptools-scm, cython, dask, python-dateutil, pandas, psutil
Successfully installed appdirs-1.4.4 cython-0.29.17 dask-2.16.0 distlib-0.3.0 filelock-3.0.12 importlib-metadata-1.6.0 numpy-1.16.6 pandas-1.0.3 pluggy-0.13.1 psutil-5.7.0 py-1.8.1 python-dateutil-2.8.1 setuptools-scm-3.5.0 toml-0.10.0 tox-3.15.0 virtualenv-20.0.20 zipp-3.1.0

[rtd-command-info] start-time: 2020-05-12T20:01:27.171913Z, end-time: 2020-05-12T20:01:30.833456Z, duration: 3, exit-code: 1
python ./setup.py install --force
libtiledb_exists checking 'library_dirs': []
libtiledb_exists found: 'None'
running install
running bdist_egg
GNU Make 4.1
Built for x86_64-pc-linux-gnu
Copyright (C) 1988-2014 Free Software Foundation, Inc.
License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>
This is free software: you are free to change and redistribute it.
There is NO WARRANTY, to the extent permitted by law.
libtiledb_exists checking 'library_dirs': []
libtiledb_exists found: 'None'
Downloading TileDB package from dev...
Building libtiledb in directory /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/build...
CMake configure command: ['cmake', '-DCMAKE_INSTALL_PREFIX=/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/dist', '-DTILEDB_TESTS=OFF', '-DTILEDB_S3=ON', '-DTILEDB_HDFS=ON', '-DTILEDB_INSTALL_LIBDIR=lib', '-DTILEDB_CPP_API=ON', '-DTILEDB_LOG_OUTPUT_ON_FAILURE=ON', '-DTILEDB_FORCE_ALL_DEPS:BOOL=OFF', '-DTILEDB_SERIALIZATION:BOOL=OFF', '-DCMAKE_BUILD_TYPE=Release', '/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev']
/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages/setuptools_scm/git.py:68: UserWarning: "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest" is shallow and may cause errors
  warnings.warn('"{}" is shallow and may cause errors'.format(wd.path))
error: [Errno 2] No such file or directory: 'cmake': 'cmake'