Read the Docs build information
Build id: 326104
Project: tiledb-inc-tiledb-py
Version: latest
Commit: 27a47dddf4693d92cfe31f40d11e888dc53e7dd5
Date: 2020-05-04T21:50:47.593937Z
State: finished
Success: False


[rtd-command-info] start-time: 2020-05-04T21:50:49.843964Z, end-time: 2020-05-04T21:50:50.922674Z, duration: 1, exit-code: 0
git clone --no-single-branch --depth 50 https://github.com/TileDB-Inc/TileDB-Py.git .
Cloning into '.'...

[rtd-command-info] start-time: 2020-05-04T21:50:51.951531Z, end-time: 2020-05-04T21:50:52.177679Z, duration: 0, exit-code: 0
git checkout --force origin/dev
Note: checking out 'origin/dev'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by performing another checkout.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -b with the checkout command again. Example:

  git checkout -b <new-branch-name>

HEAD is now at 27a47dd Add test for [ch1560]

[rtd-command-info] start-time: 2020-05-04T21:50:52.304838Z, end-time: 2020-05-04T21:50:52.502694Z, duration: 0, exit-code: 0
git clean -d -f -f


[rtd-command-info] start-time: 2020-05-04T21:50:54.181445Z, end-time: 2020-05-04T21:50:57.944286Z, duration: 3, exit-code: 0
python3.7 -mvirtualenv  
Using base prefix '/home/docs/.pyenv/versions/3.7.3'
New python executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/bin/python3.7
Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/bin/python
Installing setuptools, pip, wheel...
done.

[rtd-command-info] start-time: 2020-05-04T21:50:58.073981Z, end-time: 2020-05-04T21:50:58.843216Z, duration: 0, exit-code: 0
python -m pip install --upgrade --no-cache-dir pip
Requirement already up-to-date: pip in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages (20.1)

[rtd-command-info] start-time: 2020-05-04T21:50:59.001902Z, end-time: 2020-05-04T21:51:08.274682Z, duration: 9, exit-code: 0
python -m pip install --upgrade --no-cache-dir Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1
Collecting Pygments==2.3.1
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Collecting MarkupSafe>=0.23
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Building wheels for collected packages: mock, future
  Building wheel for mock (setup.py): started
  Building wheel for mock (setup.py): finished with status 'done'
  Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23754 sha256=d18a4a9eed80cf2f002753646b59006fad66e96d46e4763160bfaba625f9d697
  Stored in directory: /tmp/pip-ephem-wheel-cache-cls80viu/wheels/16/03/37/f0a64ab894c9102906f192db1a4071b7592292ad661563c69b
  Building wheel for future (setup.py): started
  Building wheel for future (setup.py): finished with status 'done'
  Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491058 sha256=cc2fafb51b4066476dfd6edd761fb75d4ada9aa8603e56fb1b23e418a3a0dbb7
  Stored in directory: /tmp/pip-ephem-wheel-cache-cls80viu/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0
Successfully built mock future
Installing collected packages: Pygments, setuptools, docutils, mock, pillow, alabaster, future, commonmark, pytz, babel, snowballstemmer, sphinxcontrib-websupport, pyparsing, six, packaging, idna, certifi, chardet, urllib3, requests, imagesize, MarkupSafe, Jinja2, sphinx, recommonmark, sphinx-rtd-theme, readthedocs-sphinx-ext
  Attempting uninstall: setuptools
    Found existing installation: setuptools 46.1.3
    Uninstalling setuptools-46.1.3:
      Successfully uninstalled setuptools-46.1.3
Successfully installed Jinja2-2.11.2 MarkupSafe-1.1.1 Pygments-2.3.1 alabaster-0.7.12 babel-2.8.0 certifi-2020.4.5.1 chardet-3.0.4 commonmark-0.8.1 docutils-0.14 future-0.18.2 idna-2.9 imagesize-1.2.0 mock-1.0.1 packaging-20.3 pillow-5.4.1 pyparsing-2.4.7 pytz-2020.1 readthedocs-sphinx-ext-1.0.3 recommonmark-0.5.0 requests-2.23.0 setuptools-41.0.1 six-1.14.0 snowballstemmer-2.0.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-websupport-1.2.2 urllib3-1.25.9

[rtd-command-info] start-time: 2020-05-04T21:51:08.419721Z, end-time: 2020-05-04T21:51:21.092502Z, duration: 12, exit-code: 0
python -m pip install --exists-action=w --no-cache-dir -r requirements.txt
Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages (from -r requirements.txt (line 1)) (41.0.1)
Requirement already satisfied: wheel in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages (from -r requirements.txt (line 2)) (0.34.2)
Collecting numpy==1.16.*
  Downloading numpy-1.16.6-cp37-cp37m-manylinux1_x86_64.whl (17.3 MB)
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Collecting cython
  Downloading Cython-0.29.17-cp37-cp37m-manylinux1_x86_64.whl (2.1 MB)
Collecting dask
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Collecting pandas
  Downloading pandas-1.0.3-cp37-cp37m-manylinux1_x86_64.whl (10.0 MB)
Collecting psutil
  Downloading psutil-5.7.0.tar.gz (449 kB)
Collecting pluggy<1,>=0.12.0
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Collecting importlib-metadata<2,>=0.12; python_version < "3.8"
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Requirement already satisfied: packaging>=14 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages (from tox->-r requirements.txt (line 4)) (20.3)
Collecting virtualenv!=20.0.0,!=20.0.1,!=20.0.2,!=20.0.3,!=20.0.4,!=20.0.5,!=20.0.6,!=20.0.7,>=16.0.0
  Downloading virtualenv-20.0.20-py2.py3-none-any.whl (4.7 MB)
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Requirement already satisfied: six<2,>=1.14.0 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages (from tox->-r requirements.txt (line 4)) (1.14.0)
Collecting toml>=0.9.4
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Collecting filelock<4,>=3.0.0
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Requirement already satisfied: pytz>=2017.2 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages (from pandas->-r requirements.txt (line 8)) (2020.1)
Collecting zipp>=0.5
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Requirement already satisfied: pyparsing>=2.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages (from packaging>=14->tox->-r requirements.txt (line 4)) (2.4.7)
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  Downloading distlib-0.3.0.zip (571 kB)
Building wheels for collected packages: psutil, distlib
  Building wheel for psutil (setup.py): started
  Building wheel for psutil (setup.py): finished with status 'done'
  Created wheel for psutil: filename=psutil-5.7.0-cp37-cp37m-linux_x86_64.whl size=276467 sha256=245e9142dc224d5c275e919a0037c9f7538102d0eb57b493f9e4ee75f1e4c7da
  Stored in directory: /tmp/pip-ephem-wheel-cache-pfcrzrsy/wheels/b6/e7/50/aee9cc966163d74430f13f208171dee22f11efa4a4a826661c
  Building wheel for distlib (setup.py): started
  Building wheel for distlib (setup.py): finished with status 'done'
  Created wheel for distlib: filename=distlib-0.3.0-py3-none-any.whl size=340427 sha256=655a20497eb51179204266149ffc19b3c716289b684f2886f9cc2fe295394745
  Stored in directory: /tmp/pip-ephem-wheel-cache-pfcrzrsy/wheels/a2/19/da/a15d4e2bedf3062c739b190d5cb5b7b2ecfbccb6b0d93c861b
Successfully built psutil distlib
Installing collected packages: numpy, zipp, importlib-metadata, pluggy, appdirs, distlib, filelock, virtualenv, py, toml, tox, setuptools-scm, cython, dask, python-dateutil, pandas, psutil
Successfully installed appdirs-1.4.3 cython-0.29.17 dask-2.15.0 distlib-0.3.0 filelock-3.0.12 importlib-metadata-1.6.0 numpy-1.16.6 pandas-1.0.3 pluggy-0.13.1 psutil-5.7.0 py-1.8.1 python-dateutil-2.8.1 setuptools-scm-3.5.0 toml-0.10.0 tox-3.15.0 virtualenv-20.0.20 zipp-3.1.0

[rtd-command-info] start-time: 2020-05-04T21:51:21.227920Z, end-time: 2020-05-04T21:51:24.988651Z, duration: 3, exit-code: 1
python ./setup.py install --force
libtiledb_exists checking 'library_dirs': []
libtiledb_exists found: 'None'
running install
running bdist_egg
GNU Make 4.1
Built for x86_64-pc-linux-gnu
Copyright (C) 1988-2014 Free Software Foundation, Inc.
License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>
This is free software: you are free to change and redistribute it.
There is NO WARRANTY, to the extent permitted by law.
libtiledb_exists checking 'library_dirs': []
libtiledb_exists found: 'None'
Downloading TileDB package from dev...
Building libtiledb in directory /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/build...
CMake configure command: ['cmake', '-DCMAKE_INSTALL_PREFIX=/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/dist', '-DTILEDB_TESTS=OFF', '-DTILEDB_S3=ON', '-DTILEDB_HDFS=ON', '-DTILEDB_INSTALL_LIBDIR=lib', '-DTILEDB_CPP_API=ON', '-DTILEDB_LOG_OUTPUT_ON_FAILURE=ON', '-DTILEDB_FORCE_ALL_DEPS:BOOL=OFF', '-DTILEDB_SERIALIZATION:BOOL=OFF', '-DCMAKE_BUILD_TYPE=Release', '/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev']
/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages/setuptools_scm/git.py:68: UserWarning: "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest" is shallow and may cause errors
  warnings.warn('"{}" is shallow and may cause errors'.format(wd.path))
error: [Errno 2] No such file or directory: 'cmake': 'cmake'