Read the Docs build information Build id: 318228 Project: mdolab-adflow Version: latest Commit: e6ad2a473b1e35cd7ef9cc53a7ab240270e28872 Date: 2020-04-17T12:47:24.986096Z State: finished Success: True [rtd-command-info] start-time: 2020-04-17T12:47:27.509402Z, end-time: 2020-04-17T12:47:30.622226Z, duration: 3, exit-code: 0 git clone --no-single-branch --depth 50 https://github.com/mdolab/adflow.git . Cloning into '.'... [rtd-command-info] start-time: 2020-04-17T12:47:31.312265Z, end-time: 2020-04-17T12:47:31.612010Z, duration: 0, exit-code: 0 git checkout --force origin/master Note: checking out 'origin/master'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at e6ad2a4 Python 3 updates (#29) [rtd-command-info] start-time: 2020-04-17T12:47:31.764691Z, end-time: 2020-04-17T12:47:31.960911Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2020-04-17T12:47:33.730317Z, end-time: 2020-04-17T12:47:37.273381Z, duration: 3, exit-code: 0 python3.7 -mvirtualenv Using base prefix '/home/docs/.pyenv/versions/3.7.3' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-adflow/envs/latest/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-adflow/envs/latest/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2020-04-17T12:47:37.471623Z, end-time: 2020-04-17T12:47:38.216268Z, duration: 0, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip Requirement already up-to-date: pip in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-adflow/envs/latest/lib/python3.7/site-packages (20.0.2) [rtd-command-info] start-time: 2020-04-17T12:47:38.779310Z, end-time: 2020-04-17T12:47:47.639169Z, duration: 8, exit-code: 0 python -m pip install --upgrade --no-cache-dir Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1 Collecting Pygments==2.3.1 Downloading Pygments-2.3.1-py2.py3-none-any.whl (849 kB) Collecting setuptools==41.0.1 Downloading setuptools-41.0.1-py2.py3-none-any.whl (575 kB) Collecting docutils==0.14 Downloading docutils-0.14-py3-none-any.whl (543 kB) Collecting mock==1.0.1 Downloading mock-1.0.1.tar.gz (818 kB) Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.5-py2.py3-none-any.whl (3.1 MB) Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) Collecting readthedocs-sphinx-ext<1.1 Downloading readthedocs_sphinx_ext-1.0.1-py2.py3-none-any.whl (14 kB) Collecting future Downloading future-0.18.2.tar.gz (829 kB) Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.0.0-py2.py3-none-any.whl (97 kB) Collecting imagesize Downloading imagesize-1.2.0-py2.py3-none-any.whl (4.8 kB) Collecting packaging Downloading packaging-20.3-py2.py3-none-any.whl (37 kB) Collecting sphinxcontrib-websupport Downloading sphinxcontrib_websupport-1.2.1-py2.py3-none-any.whl (39 kB) Collecting requests>=2.0.0 Downloading requests-2.23.0-py2.py3-none-any.whl (58 kB) Collecting babel!=2.0,>=1.3 Downloading Babel-2.8.0-py2.py3-none-any.whl (8.6 MB) Collecting six>=1.5 Downloading six-1.14.0-py2.py3-none-any.whl (10 kB) Collecting Jinja2>=2.3 Downloading Jinja2-2.11.2-py2.py3-none-any.whl (125 kB) Collecting pyparsing>=2.0.2 Downloading pyparsing-2.4.7-py2.py3-none-any.whl (67 kB) Collecting chardet<4,>=3.0.2 Downloading chardet-3.0.4-py2.py3-none-any.whl (133 kB) Collecting idna<3,>=2.5 Downloading idna-2.9-py2.py3-none-any.whl (58 kB) Collecting certifi>=2017.4.17 Downloading certifi-2020.4.5.1-py2.py3-none-any.whl (157 kB) Collecting urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 Downloading urllib3-1.25.9-py2.py3-none-any.whl (126 kB) Collecting pytz>=2015.7 Downloading pytz-2019.3-py2.py3-none-any.whl (509 kB) Collecting MarkupSafe>=0.23 Downloading MarkupSafe-1.1.1-cp37-cp37m-manylinux1_x86_64.whl (27 kB) Building wheels for collected packages: mock, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23754 sha256=5a6acb7397f2436b67c1009a6f94d1fc603c1854a63232624f5a1c07cb50a7c9 Stored in directory: /tmp/pip-ephem-wheel-cache-llcgr7e0/wheels/16/03/37/f0a64ab894c9102906f192db1a4071b7592292ad661563c69b Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491058 sha256=3f3797ee8a3c307e25624962526a6dd55a3b3f9009116afdfbe876f544ecc307 Stored in directory: /tmp/pip-ephem-wheel-cache-llcgr7e0/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0 Successfully built mock future Installing collected packages: Pygments, setuptools, docutils, mock, pillow, alabaster, future, commonmark, snowballstemmer, imagesize, six, pyparsing, packaging, sphinxcontrib-websupport, chardet, idna, certifi, urllib3, requests, pytz, babel, MarkupSafe, Jinja2, sphinx, recommonmark, sphinx-rtd-theme, readthedocs-sphinx-ext Attempting uninstall: setuptools Found existing installation: setuptools 46.1.3 Uninstalling setuptools-46.1.3: Successfully uninstalled setuptools-46.1.3 Successfully installed Jinja2-2.11.2 MarkupSafe-1.1.1 Pygments-2.3.1 alabaster-0.7.12 babel-2.8.0 certifi-2020.4.5.1 chardet-3.0.4 commonmark-0.8.1 docutils-0.14 future-0.18.2 idna-2.9 imagesize-1.2.0 mock-1.0.1 packaging-20.3 pillow-5.4.1 pyparsing-2.4.7 pytz-2019.3 readthedocs-sphinx-ext-1.0.1 recommonmark-0.5.0 requests-2.23.0 setuptools-41.0.1 six-1.14.0 snowballstemmer-2.0.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-websupport-1.2.1 urllib3-1.25.9 [rtd-command-info] start-time: 2020-04-17T12:47:47.766918Z, end-time: 2020-04-17T12:47:49.085673Z, duration: 1, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r doc/requirements.txt Collecting numpydoc Downloading numpydoc-0.9.2.tar.gz (27 kB) Requirement already satisfied: sphinx>=1.6.5 in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-adflow/envs/latest/lib/python3.7/site-packages (from numpydoc->-r doc/requirements.txt (line 1)) (1.8.5) Requirement already satisfied: Jinja2>=2.3 in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-adflow/envs/latest/lib/python3.7/site-packages (from numpydoc->-r doc/requirements.txt (line 1)) (2.11.2) Requirement already satisfied: packaging in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-adflow/envs/latest/lib/python3.7/site-packages (from sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (20.3) Requirement already satisfied: six>=1.5 in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-adflow/envs/latest/lib/python3.7/site-packages (from sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (1.14.0) Requirement already satisfied: Pygments>=2.0 in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-adflow/envs/latest/lib/python3.7/site-packages (from sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (2.3.1) Requirement already satisfied: snowballstemmer>=1.1 in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-adflow/envs/latest/lib/python3.7/site-packages (from sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (2.0.0) Requirement already satisfied: requests>=2.0.0 in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-adflow/envs/latest/lib/python3.7/site-packages (from sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (2.23.0) Requirement already satisfied: alabaster<0.8,>=0.7 in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-adflow/envs/latest/lib/python3.7/site-packages (from sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (0.7.12) Requirement already satisfied: imagesize in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-adflow/envs/latest/lib/python3.7/site-packages (from sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (1.2.0) Requirement already satisfied: sphinxcontrib-websupport in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-adflow/envs/latest/lib/python3.7/site-packages (from sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (1.2.1) Requirement already satisfied: docutils>=0.11 in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-adflow/envs/latest/lib/python3.7/site-packages (from sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (0.14) Requirement already satisfied: babel!=2.0,>=1.3 in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-adflow/envs/latest/lib/python3.7/site-packages (from sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (2.8.0) Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-adflow/envs/latest/lib/python3.7/site-packages (from sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (41.0.1) Requirement already satisfied: MarkupSafe>=0.23 in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-adflow/envs/latest/lib/python3.7/site-packages (from Jinja2>=2.3->numpydoc->-r doc/requirements.txt (line 1)) (1.1.1) Requirement already satisfied: pyparsing>=2.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-adflow/envs/latest/lib/python3.7/site-packages (from packaging->sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (2.4.7) Requirement already satisfied: idna<3,>=2.5 in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-adflow/envs/latest/lib/python3.7/site-packages (from requests>=2.0.0->sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (2.9) Requirement already satisfied: urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-adflow/envs/latest/lib/python3.7/site-packages (from requests>=2.0.0->sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (1.25.9) Requirement already satisfied: certifi>=2017.4.17 in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-adflow/envs/latest/lib/python3.7/site-packages (from requests>=2.0.0->sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (2020.4.5.1) Requirement already satisfied: chardet<4,>=3.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-adflow/envs/latest/lib/python3.7/site-packages (from requests>=2.0.0->sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (3.0.4) Requirement already satisfied: pytz>=2015.7 in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-adflow/envs/latest/lib/python3.7/site-packages (from babel!=2.0,>=1.3->sphinx>=1.6.5->numpydoc->-r doc/requirements.txt (line 1)) (2019.3) Building wheels for collected packages: numpydoc Building wheel for numpydoc (setup.py): started Building wheel for numpydoc (setup.py): finished with status 'done' Created wheel for numpydoc: filename=numpydoc-0.9.2-py3-none-any.whl size=31893 sha256=01034080586d16d2f645aee7308e248f8ae70b389b839751d334b8a27339b6ff Stored in directory: /tmp/pip-ephem-wheel-cache-4qzqwf9s/wheels/e9/c6/13/2c19884012fbeeccc07743d20b25557f1b48465381b34f0dae Successfully built numpydoc Installing collected packages: numpydoc Successfully installed numpydoc-0.9.2 [rtd-command-info] start-time: 2020-04-17T12:47:50.955101Z, end-time: 2020-04-17T12:47:51.165529Z, duration: 0, exit-code: 0 cat doc/conf.py # -*- coding: utf-8 -*- # # ADflow documentation build configuration file, created by # sphinx-quickstart on Tue Mar 25 15:53:41 2014. # # This file is execfile()d with the current directory set to its containing dir. # # Note that not all possible configuration values are present in this # autogenerated file. # # All configuration values have a default; values that are commented out # serve to show the default. import sys, os # If extensions (or modules to document with autodoc) are in another directory, # add these directories to sys.path here. If the directory is relative to the # documentation root, use os.path.abspath to make it absolute, like shown here. sys.path.insert(0, os.path.abspath('../')) # -- General configuration ----------------------------------------------------- # If your documentation needs a minimal Sphinx version, state it here. #needs_sphinx = '1.0' # Add any Sphinx extension module names here, as strings. They can be extensions # coming with Sphinx (named 'sphinx.ext.*') or your custom ones. extensions = ['sphinx.ext.viewcode', 'sphinx.ext.imgmath', 'sphinx.ext.autodoc', 'numpydoc'] # mock import for autodoc autodoc_mock_imports = ['numpy', 'mpi4py', 'petsc4py', 'baseclasses'] # Add any paths that contain templates here, relative to this directory. templates_path = ['_templates'] # The suffix of source filenames. source_suffix = '.rst' # The encoding of source files. #source_encoding = 'utf-8-sig' # The master toctree document. master_doc = 'index' # General information about the project. project = u'ADflow' copyright = u'2014, MDOLAB' # The version info for the project you're documenting, acts as replacement for # |version| and |release|, also used in various other places throughout the # built documents. # # The short X.Y version. version = 'dev' # The full version, including alpha/beta/rc tags. release = 'dev' # The language for content autogenerated by Sphinx. Refer to documentation # for a list of supported languages. #language = None # There are two options for replacing |today|: either, you set today to some # non-false value, then it is used: #today = '' # Else, today_fmt is used as the format for a strftime call. #today_fmt = '%B %d, %Y' # List of patterns, relative to source directory, that match files and # directories to ignore when looking for source files. exclude_patterns = ['_build'] # The reST default role (used for this markup: `text`) to use for all documents. #default_role = None # If true, '()' will be appended to :func: etc. cross-reference text. #add_function_parentheses = True # If true, the current module name will be prepended to all description # unit titles (such as .. function::). #add_module_names = True # If true, sectionauthor and moduleauthor directives will be shown in the # output. They are ignored by default. #show_authors = False # The name of the Pygments (syntax highlighting) style to use. pygments_style = 'sphinx' # A list of ignored prefixes for module index sorting. #modindex_common_prefix = [] # -- Options for HTML output --------------------------------------------------- # The theme to use for HTML and HTML Help pages. See the documentation for # a list of builtin themes. # html_theme_path = ['themes'] # html_theme = 'mdolab_theme' # html_static_path = ['_static'] # Theme options are theme-specific and customize the look and feel of a theme # further. For a list of options available for each theme, see the # documentation. #html_theme_options = {} # Add any paths that contain custom themes here, relative to this directory. #html_theme_path = [] # The name for this set of Sphinx documents. If None, it defaults to # " v documentation". #html_title = None # A shorter title for the navigation bar. Default is the same as html_title. #html_short_title = None # The name of an image file (relative to this directory) to place at the top # of the sidebar. #html_logo = None # The name of an image file (within the static path) to use as favicon of the # docs. This file should be a Windows icon file (.ico) being 16x16 or 32x32 # pixels large. #html_favicon = None # Add any paths that contain custom static files (such as style sheets) here, # relative to this directory. They are copied after the builtin static files, # so a file named "default.css" will overwrite the builtin "default.css". html_static_path = ['themes/mdolab_theme/static'] # If not '', a 'Last updated on:' timestamp is inserted at every page bottom, # using the given strftime format. #html_last_updated_fmt = '%b %d, %Y' # If true, SmartyPants will be used to convert quotes and dashes to # typographically correct entities. #html_use_smartypants = True # Custom sidebar templates, maps document names to template names. #html_sidebars = {} # Additional templates that should be rendered to pages, maps page names to # template names. #html_additional_pages = {} # If false, no module index is generated. #html_domain_indices = True # If false, no index is generated. #html_use_index = True # If true, the index is split into individual pages for each letter. #html_split_index = False # If true, links to the reST sources are added to the pages. #html_show_sourcelink = True # If true, "Created using Sphinx" is shown in the HTML footer. Default is True. #html_show_sphinx = True # If true, "(C) Copyright ..." is shown in the HTML footer. Default is True. #html_show_copyright = True # If true, an OpenSearch description file will be output, and all pages will # contain a tag referring to it. The value of this option must be the # base URL from which the finished HTML is served. #html_use_opensearch = '' # This is the file name suffix for HTML files (e.g. ".xhtml"). #html_file_suffix = None # Output file base name for HTML help builder. htmlhelp_basename = 'ADflowdoc' # -- Options for LaTeX output -------------------------------------------------- latex_elements = { # The paper size ('letterpaper' or 'a4paper'). #'papersize': 'letterpaper', # The font size ('10pt', '11pt' or '12pt'). #'pointsize': '10pt', # Additional stuff for the LaTeX preamble. #'preamble': '', } # Grouping the document tree into LaTeX files. List of tuples # (source start file, target name, title, author, documentclass [howto/manual]). latex_documents = [ ('index', 'ADflow.tex', u'ADflow Documentation', u'MDOLAB', 'manual'), ] # The name of an image file (relative to this directory) to place at the top of # the title page. #latex_logo = None # For "manual" documents, if this is true, then toplevel headings are parts, # not chapters. #latex_use_parts = False # If true, show page references after internal links. #latex_show_pagerefs = False # If true, show URL addresses after external links. #latex_show_urls = False # Documents to append as an appendix to all manuals. #latex_appendices = [] # If false, no module index is generated. #latex_domain_indices = True # -- Options for manual page output -------------------------------------------- # One entry per manual page. List of tuples # (source start file, name, description, authors, manual section). man_pages = [ ('index', 'adflow', u'ADflow Documentation', [u'MDOLAB'], 1) ] # If true, show URL addresses after external links. #man_show_urls = False # -- Options for Texinfo output ------------------------------------------------ # Grouping the document tree into Texinfo files. List of tuples # (source start file, target name, title, author, # dir menu entry, description, category) texinfo_documents = [ ('index', 'ADflow', u'ADflow Documentation', u'MDOLAB', 'ADflow', 'One line description of project.', 'Miscellaneous'), ] # Documents to append as an appendix to all manuals. #texinfo_appendices = [] # If false, no module index is generated. #texinfo_domain_indices = True # How to display URL addresses: 'footnote', 'no', or 'inline'. #texinfo_show_urls = 'footnote' ########################################################################### # auto-created readthedocs.org specific configuration # ########################################################################### # # The following code was added during an automated build on readthedocs.org # It is auto created and injected for every build. The result is based on the # conf.py.tmpl file found in the readthedocs.org codebase: # https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl # import importlib import sys import os.path from six import string_types from sphinx import version_info # Get suffix for proper linking to GitHub # This is deprecated in Sphinx 1.3+, # as each page can have its own suffix if globals().get('source_suffix', False): if isinstance(source_suffix, string_types): SUFFIX = source_suffix elif isinstance(source_suffix, (list, tuple)): # Sphinx >= 1.3 supports list/tuple to define multiple suffixes SUFFIX = source_suffix[0] elif isinstance(source_suffix, dict): # Sphinx >= 1.8 supports a mapping dictionary for multiple suffixes SUFFIX = list(source_suffix.keys())[0] # make a ``list()`` for py2/py3 compatibility else: # default to .rst SUFFIX = '.rst' else: SUFFIX = '.rst' # Add RTD Static Path. Add to the end because it overwrites previous files. if not 'html_static_path' in globals(): html_static_path = [] if os.path.exists('_static'): html_static_path.append('_static') # Add RTD Theme only if they aren't overriding it already using_rtd_theme = ( ( 'html_theme' in globals() and html_theme in ['default'] and # Allow people to bail with a hack of having an html_style 'html_style' not in globals() ) or 'html_theme' not in globals() ) if using_rtd_theme: theme = importlib.import_module('sphinx_rtd_theme') html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} if 'html_theme_path' in globals(): html_theme_path.append(theme.get_html_theme_path()) else: html_theme_path = [theme.get_html_theme_path()] if globals().get('websupport2_base_url', False): websupport2_base_url = 'https://readthedocs.com/websupport' websupport2_static_url = 'https://assets.readthedocs.com/' #Add project information to the template context. context = { 'using_theme': using_rtd_theme, 'html_theme': html_theme, 'current_version': "latest", 'version_slug': "latest", 'MEDIA_URL': "https://media.readthedocs.com/media/", 'STATIC_URL': "https://assets.readthedocs.com/", 'PRODUCTION_DOMAIN': "readthedocs.com", 'versions': [ ], 'downloads': [ ("pdf", "//mdolab-adflow.readthedocs-hosted.com/_/downloads/en/latest/pdf/"), ("html", "//mdolab-adflow.readthedocs-hosted.com/_/downloads/en/latest/htmlzip/"), ("epub", "//mdolab-adflow.readthedocs-hosted.com/_/downloads/en/latest/epub/"), ], 'subprojects': [ ], 'slug': 'mdolab-adflow', 'name': u'adflow', 'rtd_language': u'en', 'programming_language': u'words', 'canonical_url': 'https://mdolab-adflow.readthedocs-hosted.com/', 'analytics_code': 'None', 'single_version': False, 'conf_py_path': '/doc/', 'api_host': 'https://readthedocs.com', 'proxied_api_host': '/_', 'github_user': 'mdolab', 'github_repo': 'adflow', 'github_version': 'master', 'display_github': True, 'bitbucket_user': 'None', 'bitbucket_repo': 'None', 'bitbucket_version': 'master', 'display_bitbucket': False, 'gitlab_user': 'None', 'gitlab_repo': 'None', 'gitlab_version': 'master', 'display_gitlab': False, 'READTHEDOCS': True, 'using_theme': (html_theme == "default"), 'new_theme': (html_theme == "sphinx_rtd_theme"), 'source_suffix': SUFFIX, 'ad_free': False, 'user_analytics_code': '', 'global_analytics_code': 'UA-17997319-2', 'commit': 'e6ad2a47', } if 'html_context' in globals(): html_context.update(context) else: html_context = context # Add custom RTD extension if 'extensions' in globals(): # Insert at the beginning because it can interfere # with other extensions. # See https://github.com/rtfd/readthedocs.org/pull/4054 extensions.insert(0, "readthedocs_ext.readthedocs") else: extensions = ["readthedocs_ext.readthedocs"] # Add External version warning banner to the external version documentation if 'branch' == 'external': extensions.insert(1, "readthedocs_ext.external_version_warning") project_language = 'en' # User's Sphinx configurations language_user = globals().get('language', None) latex_engine_user = globals().get('latex_engine', None) latex_elements_user = globals().get('latex_elements', None) # Remove this once xindy gets installed in Docker image and XINDYOPS # env variable is supported # https://github.com/rtfd/readthedocs-docker-images/pull/98 latex_use_xindy = False chinese = any([ language_user in ('zh_CN', 'zh_TW'), project_language in ('zh_CN', 'zh_TW'), ]) japanese = any([ language_user == 'ja', project_language == 'ja', ]) if chinese: latex_engine = latex_engine_user or 'xelatex' latex_elements_rtd = { 'preamble': '\\usepackage[UTF8]{ctex}\n', } latex_elements = latex_elements_user or latex_elements_rtd elif japanese: latex_engine = latex_engine_user or 'platex' [rtd-command-info] start-time: 2020-04-17T12:47:51.285195Z, end-time: 2020-04-17T12:47:55.583218Z, duration: 4, exit-code: 0 python sphinx-build -T -b readthedocs -d _build/doctrees-readthedocs -D language=en . _build/html Running Sphinx v1.8.5 loading translations [en]... done making output directory... building [mo]: targets for 0 po files that are out of date building [readthedocs]: targets for 12 source files that are out of date updating environment: 12 added, 0 changed, 0 removed reading sources... [ 8%] adjoint reading sources... [ 16%] autodiff reading sources... [ 25%] devguide reading sources... [ 33%] index reading sources... [ 41%] install reading sources... [ 50%] introduction reading sources... [ 58%] meshing reading sources... [ 66%] options reading sources... [ 75%] performance reading sources... [ 83%] pyADflow reading sources... [ 91%] solvers reading sources... 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writing... done copying TeX support files... done build succeeded, 155 warnings. The LaTeX files are in _build/latex. Run 'make' in that directory to run these through (pdf)latex (use `make latexpdf' here to do that automatically). [rtd-command-info] start-time: 2020-04-17T12:48:03.707209Z, end-time: 2020-04-17T12:48:03.912133Z, duration: 0, exit-code: 0 cat latexmkrc $latex = 'latex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $pdflatex = 'pdflatex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $lualatex = 'lualatex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $xelatex = 'xelatex --no-pdf ' . $ENV{'LATEXOPTS'} . ' %O %S'; $makeindex = 'makeindex -s python.ist %O -o %D %S'; add_cus_dep( "glo", "gls", 0, "makeglo" ); sub makeglo { return system( "makeindex -s gglo.ist -o '$_[0].gls' '$_[0].glo'" ); } [rtd-command-info] start-time: 2020-04-17T12:48:04.035149Z, end-time: 2020-04-17T12:48:06.118845Z, duration: 2, exit-code: 0 latexmk -r latexmkrc -pdf -f -dvi- -ps- -jobname=mdolab-adflow -interaction=nonstopmode Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 1, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 2, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 3, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 4, chunk 1. Subroutine makeglo redefined at (eval 11) line 7, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 1, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 2, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 3, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 4, chunk 1. Latexmk: This is Latexmk, John Collins, 1 January 2015, version: 4.41. File::Glob::glob() will disappear in perl 5.30. Use File::Glob::bsd_glob() instead. at /usr/bin/latexmk line 7482. Rule 'pdflatex': Rules & subrules not known to be previously run: pdflatex Rule 'pdflatex': The following rules & subrules became out-of-date: 'pdflatex' ------------ Run number 1 of rule 'pdflatex' ------------ ------------ Running 'pdflatex -interaction=nonstopmode -recorder --jobname="mdolab-adflow" "ADflow.tex"' ------------ Latexmk: applying rule 'pdflatex'... 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(/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [3] [4] Chapter 2. [5] [6] Chapter 3. (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pcr.fd) [7] [8] [9] [10] Chapter 4. Underfull \hbox (badness 10000) in paragraph at lines 530--536 []\T1/ptm/m/n/10 Use \T1/pcr/m/n/10 Output->Select Solver \T1/ptm/m/n/10 to spe c-ify the \T1/pcr/m/n/10 Output Solver \T1/ptm/m/n/10 type as \T1/pcr/m/n/10 CG NS\T1/ptm/m/n/10 . Use Underfull \hbox (badness 10000) in paragraph at lines 530--536 \T1/pcr/m/n/10 Output->Boundary Condition \T1/ptm/m/n/10 to spec-ify the bound- ary con-di-tion type on each sur-faces. [11] [12] Chapter 5. Underfull \hbox (badness 5787) in paragraph at lines 594--597 \T1/ptm/m/n/10 di-tion in-for-ma-tion con- Underfull \hbox (badness 10000) in paragraph at lines 616--618 []|\T1/ptm/m/n/10 Flag to use spec-i-fied Underfull \hbox (badness 5231) in paragraph at lines 683--686 \T1/ptm/m/n/10 pre-ci-sion can ad-versely Underfull \hbox (badness 10000) in paragraph at lines 693--699 \T1/ptm/m/n/10 ^^Pvol-umeVari-ables^^Q may Underfull \hbox (badness 10000) in paragraph at lines 693--699 \T1/ptm/m/n/10 `isoSurface':{`Vx':- Underfull \hbox (badness 10000) in paragraph at lines 706--711 []|\T1/ptm/m/n/10 Only ap-pli-ca-ble for Underfull \hbox (badness 10000) in paragraph at lines 706--711 \T1/ptm/m/n/10 RANS/laminar com-pu- Underfull \hbox (badness 5667) in paragraph at lines 706--711 \T1/ptm/m/n/10 ve-loc-i-ties as the value Underfull \hbox (badness 10000) in paragraph at lines 706--711 \T1/ptm/m/n/10 the ve-loc-i-ties on the Underfull \hbox (badness 10000) in paragraph at lines 718--719 []|\T1/ptm/m/n/10 Set the dis-cretiza-tion Underfull \hbox (badness 10000) in paragraph at lines 718--719 \T1/ptm/m/n/10 gen-er-ally rec-om-mended Underfull \hbox (badness 6608) in paragraph at lines 718--719 \T1/ptm/m/n/10 speed, at the cost of Underfull \hbox (badness 10000) in paragraph at lines 718--719 \T1/ptm/m/n/10 nu-mer-i-cal ac-cu-racy. Underfull \hbox (badness 10000) in paragraph at lines 738--740 []|\T1/ptm/m/n/10 Set the dis-cretiza-tion Underfull \hbox (badness 6412) in paragraph at lines 738--740 \T1/ptm/m/n/10 method for the coarse Underfull \hbox (badness 10000) in paragraph at lines 738--740 \T1/ptm/m/n/10 be the same as the Underfull \hbox (badness 10000) in paragraph at lines 757--762 []|\T1/ptm/m/n/10 Type of \T1/ptm/m/it/10 solver \T1/ptm/m/n/10 or Underfull \hbox (badness 10000) in paragraph at lines 757--762 \T1/ptm/m/n/10 smoother to use with Underfull \hbox (badness 10000) in paragraph at lines 757--762 \T1/ptm/m/n/10 ized diagonal-dominant Underfull \hbox (badness 10000) in paragraph at lines 757--762 \T1/ptm/m/n/10 alternating-direction im- Underfull \hbox (badness 6658) in paragraph at lines 778--783 \T1/ptm/m/n/10 ex-ten-sively tested from Underfull \hbox (badness 7631) in paragraph at lines 778--783 \T1/ptm/m/n/10 been ex-ten-sively tested Underfull \hbox (badness 10000) in paragraph at lines 790--793 \T1/ptm/m/n/10 sim-u-la-tions have been Underfull \hbox (badness 10000) in paragraph at lines 806--807 []\T1/ptm/m/it/10 sae \T1/ptm/m/n/10 - Sparart Underfull \hbox (badness 10000) in paragraph at lines 806--807 \T1/ptm/m/n/10 Allmaras-Edward Underfull \hbox (badness 10000) in paragraph at lines 843--845 []|\T1/ptm/m/n/10 This pa-ram-e-ter af-fects Underfull \hbox (badness 7291) in paragraph at lines 843--845 \T1/ptm/m/n/10 how the to-tal resid-ual Underfull \hbox (badness 10000) in paragraph at lines 843--845 \T1/ptm/m/n/10 what tur-bu-lence model Underfull \hbox (badness 10000) in paragraph at lines 847--848 \T1/ptm/m/it/10 scalar \T1/ptm/m/n/10 - De-fault: Underfull \hbox (badness 10000) in paragraph at lines 850--851 []\T1/ptm/m/it/10 sae \T1/ptm/m/n/10 - Sparart Underfull \hbox (badness 10000) in paragraph at lines 850--851 \T1/ptm/m/n/10 Allmaras-Edward Underfull \hbox (badness 10000) in paragraph at lines 850--851 \T1/ptm/m/n/10 model - NOT Underfull \hbox (badness 10000) in paragraph at lines 853--854 []\T1/ptm/m/it/10 k omega wilcox Underfull \hbox (badness 10000) in paragraph at lines 853--854 \T1/ptm/m/n/10 - NOT IM-PLE- Underfull \hbox (badness 10000) in paragraph at lines 856--857 \T1/ptm/m/n/10 - NOT IM-PLE- Underfull \hbox (badness 10000) in paragraph at lines 876--881 \T1/ptm/m/n/10 This is gen-er-ally not Underfull \hbox (badness 10000) in paragraph at lines 876--881 \T1/ptm/m/n/10 give (po-ten-tially very) Underfull \hbox (badness 10000) in paragraph at lines 876--881 \T1/ptm/m/n/10 poor drag es-ti-mates. Overfull \hbox (13.11995pt too wide) in paragraph at lines 882--883 []|\T1/ptm/m/it/10 useApproximateWallDistance| Underfull \hbox (badness 10000) in paragraph at lines 888--896 \T1/ptm/m/n/10 dis-tance cal-cu-la-tion. Underfull \hbox (badness 10000) in paragraph at lines 888--896 \T1/ptm/m/n/10 ex-act wall dis-tances Underfull \hbox (badness 10000) in paragraph at lines 888--896 \T1/ptm/m/n/10 are com-puted dur-ing Underfull \hbox (badness 10000) in paragraph at lines 888--896 \T1/ptm/m/n/10 ini-tial-iza-tion and the Underfull \hbox (badness 10000) in paragraph at lines 888--896 \T1/ptm/m/n/10 para-met-ric lo-ca-tion of Underfull \hbox (badness 10000) in paragraph at lines 888--896 \T1/ptm/m/n/10 the ge-om-e-try de-forms Underfull \hbox (badness 5288) in paragraph at lines 903--909 \T1/ptm/m/n/10 ary con-di-tions are im- Underfull \hbox (badness 10000) in paragraph at lines 903--909 \T1/ptm/m/n/10 ple-mented for in-vis-cid Underfull \hbox (badness 6808) in paragraph at lines 903--909 \T1/ptm/m/it/10 ex-trap-o-la-tion\T1/ptm/m/n/10 , \T1/ptm/m/it/10 quadratic Underfull \hbox (badness 10000) in paragraph at lines 903--909 \T1/ptm/m/it/10 pres-sure ex-trap-o-la-tion Underfull \hbox (badness 5105) in paragraph at lines 916--920 \T1/ptm/m/n/10 de-fault value need not Overfull \hbox (6.90999pt too wide) in paragraph at lines 921--922 []|\T1/ptm/m/it/10 dissipationScalingExponent| Underfull \hbox (badness 10000) in paragraph at lines 1018--1022 \T1/ptm/m/n/10 mean-ing-ful for RANS Underfull \hbox (badness 10000) in paragraph at lines 1018--1022 \T1/ptm/m/n/10 sim-u-la-tions. Cer-tain Underfull \hbox (badness 10000) in paragraph at lines 1018--1022 \T1/ptm/m/n/10 ben-e-fit from a slight Underfull \hbox (badness 10000) in paragraph at lines 1029--1035 []|\T1/ptm/m/n/10 The Underfull \hbox (badness 10000) in paragraph at lines 1029--1035 \T1/ptm/m/n/10 the Runge-Kutta sim- Underfull \hbox (badness 10000) in paragraph at lines 1029--1035 \T1/ptm/m/n/10 main pa-ram-e-ter that Underfull \hbox (badness 10000) in paragraph at lines 1029--1035 \T1/ptm/m/n/10 de-ter-mines the over-all Underfull \hbox (badness 10000) in paragraph at lines 1029--1035 \T1/ptm/m/n/10 some ex-per-i-men-ta-tion [13] [14] [15] [16] Underfull \hbox (badness 7649) in paragraph at lines 1098--1102 \T1/ptm/m/n/10 could be run with-iout Underfull \hbox (badness 7238) in paragraph at lines 1113--1114 []\T1/ptm/m/it/10 bdf \T1/ptm/m/n/10 - 2nd or-der Underfull \hbox (badness 10000) in paragraph at lines 1113--1114 \T1/ptm/m/n/10 back-wards dif-fer- Underfull \hbox (badness 10000) in paragraph at lines 1122--1123 []\T1/ptm/m/it/10 md \T1/ptm/m/n/10 - Mul-ti-dis- Underfull \hbox (badness 10000) in paragraph at lines 1122--1123 \T1/ptm/m/n/10 ci-plinary (md) Underfull \hbox (badness 10000) in paragraph at lines 1122--1123 \T1/ptm/m/n/10 / Ar-bi-trary La- Underfull \hbox (badness 10000) in paragraph at lines 1122--1123 \T1/ptm/m/n/10 grangian Eu-le-rian Underfull \hbox (badness 5832) in paragraph at lines 1161--1164 []|\T1/ptm/m/n/10 The num-ber of ^^Pspec- Underfull \hbox (badness 7667) in paragraph at lines 1189--1191 []|\T1/ptm/m/n/10 Use a spec-i-fied Mach Underfull \hbox (badness 10000) in paragraph at lines 1189--1191 \T1/ptm/m/n/10 Time spec-tral anal-y-sis. Underfull \hbox (badness 10000) in paragraph at lines 1198--1200 \T1/ptm/m/n/10 Time spec-tral anal-y-sis. Underfull \hbox (badness 6995) in paragraph at lines 1207--1209 \T1/ptm/m/n/10 (pitch) mo-tion for the Underfull \hbox (badness 10000) in paragraph at lines 1216--1218 \T1/ptm/m/n/10 (yaw) mo-tion for the Underfull \hbox (badness 10000) in paragraph at lines 1216--1218 \T1/ptm/m/n/10 Time spec-tral anal-y-sis. Underfull \hbox (badness 10000) in paragraph at lines 1243--1245 []|\T1/ptm/m/n/10 Flag to com-pute time Underfull \hbox (badness 6268) in paragraph at lines 1252--1259 \T1/ptm/m/n/10 1 to 2 or-ders mag-ni- Underfull \hbox (badness 5431) in paragraph at lines 1277--1281 []|\T1/ptm/m/n/10 The con-ver-gence fac-tor Underfull \hbox (badness 10000) in paragraph at lines 1277--1281 \T1/ptm/m/n/10 grids dur-ing multi-grid Underfull \hbox (badness 6078) in paragraph at lines 1288--1292 \T1/ptm/m/n/10 ual can be above the [17] [18] [19] [20] [21] [22] [23] Underfull \hbox (badness 10000) in paragraph at lines 1322--1327 []|\T1/ptm/m/n/10 Type of PETSc KSP Underfull \hbox (badness 6364) in paragraph at lines 1322--1327 \T1/ptm/m/n/10 ^^U Transpose-Free quasi Underfull \hbox (badness 10000) in paragraph at lines 1334--1339 []|\T1/ptm/m/n/10 The rel-a-tive tol-er-ance Underfull \hbox (badness 10000) in paragraph at lines 1334--1339 \T1/ptm/m/n/10 New-ton so-lu-tion tech- Underfull \hbox (badness 5862) in paragraph at lines 1334--1339 \T1/ptm/m/n/10 dif-fi-cult tran-sients have Underfull \hbox (badness 6268) in paragraph at lines 1346--1349 []|\T1/ptm/m/n/10 The size of the GM- Underfull \hbox (badness 5652) in paragraph at lines 1356--1360 \T1/ptm/m/n/10 so-lu-tion; there-after the [24] [25] Underfull \hbox (badness 10000) in paragraph at lines 1578--1580 []|\T1/ptm/m/n/10 List of the vari-ables Underfull \hbox (badness 10000) in paragraph at lines 1578--1580 \T1/ptm/m/n/10 whose con-ver-gence Underfull \hbox (badness 10000) in paragraph at lines 1578--1580 \T1/ptm/m/n/10 should be mon-i-tored. Underfull \hbox (badness 10000) in paragraph at lines 1582--1583 []\T1/ptm/m/it/10 resrho \T1/ptm/m/n/10 (den-sity Underfull \hbox (badness 10000) in paragraph at lines 1585--1586 []\T1/ptm/m/it/10 resmom \T1/ptm/m/n/10 (mo-men- Underfull \hbox (badness 10000) in paragraph at lines 1603--1604 []\T1/ptm/m/it/10 cd \T1/ptm/m/n/10 (drag co-ef-fi- Underfull \hbox (badness 10000) in paragraph at lines 1612--1613 []\T1/ptm/m/it/10 cfx \T1/ptm/m/n/10 (force co- Underfull \hbox (badness 10000) in paragraph at lines 1612--1613 \T1/ptm/m/n/10 ef-fi-cient in x- Underfull \hbox (badness 10000) in paragraph at lines 1615--1616 []\T1/ptm/m/it/10 cfy \T1/ptm/m/n/10 (force co- Underfull \hbox (badness 10000) in paragraph at lines 1615--1616 \T1/ptm/m/n/10 ef-fi-cient in y- Underfull \hbox (badness 10000) in paragraph at lines 1618--1619 []\T1/ptm/m/it/10 cfz \T1/ptm/m/n/10 (force co- Underfull \hbox (badness 10000) in paragraph at lines 1618--1619 \T1/ptm/m/n/10 ef-fi-cient in z- Underfull \hbox (badness 10000) in paragraph at lines 1621--1622 []\T1/ptm/m/it/10 cmx \T1/ptm/m/n/10 (mo-ment Underfull \hbox (badness 10000) in paragraph at lines 1621--1622 \T1/ptm/m/n/10 co-ef-fi-cient in Underfull \hbox (badness 10000) in paragraph at lines 1624--1625 []\T1/ptm/m/it/10 cmy \T1/ptm/m/n/10 (mo-ment Underfull \hbox (badness 10000) in paragraph at lines 1624--1625 \T1/ptm/m/n/10 co-ef-fi-cient in Underfull \hbox (badness 10000) in paragraph at lines 1627--1628 []\T1/ptm/m/it/10 cmz \T1/ptm/m/n/10 (mo-ment Underfull \hbox (badness 10000) in paragraph at lines 1627--1628 \T1/ptm/m/n/10 co-ef-fi-cient in Underfull \hbox (badness 10000) in paragraph at lines 1630--1631 []\T1/ptm/m/it/10 hdiff \T1/ptm/m/n/10 (max-i-mum Underfull \hbox (badness 10000) in paragraph at lines 1630--1631 \T1/ptm/m/n/10 rel-a-tive dif-fer-ence Underfull \hbox (badness 10000) in paragraph at lines 1630--1631 \T1/ptm/m/n/10 be-tween H and Underfull \hbox (badness 10000) in paragraph at lines 1633--1634 []\T1/ptm/m/it/10 mach \T1/ptm/m/n/10 (max-i-mum Underfull \hbox (badness 10000) in paragraph at lines 1639--1640 []\T1/ptm/m/it/10 eddyv \T1/ptm/m/n/10 (max-i-mum Underfull \hbox (badness 10000) in paragraph at lines 1648--1649 []|\T1/ptm/m/n/10 [`cp','vx', `vy', `vz', Underfull \hbox (badness 7012) in paragraph at lines 1680--1681 []\T1/ptm/m/it/10 cf \T1/ptm/m/n/10 (mag-ni-tude of Underfull \hbox (badness 10000) in paragraph at lines 1712--1714 []|\T1/ptm/m/n/10 The vari-ables which Underfull \hbox (badness 10000) in paragraph at lines 1712--1714 \T1/ptm/m/n/10 restart, writ-ten to the Underfull \hbox (badness 10000) in paragraph at lines 1712--1714 \T1/ptm/m/n/10 CGNS vol-ume so-lu- Underfull \hbox (badness 10000) in paragraph at lines 1749--1750 []\T1/ptm/m/it/10 macht \T1/ptm/m/n/10 (tur-bu-lent Underfull \hbox (badness 10000) in paragraph at lines 1764--1765 []\T1/ptm/m/it/10 resrho \T1/ptm/m/n/10 (den-sity Underfull \hbox (badness 10000) in paragraph at lines 1767--1768 []\T1/ptm/m/it/10 resmom \T1/ptm/m/n/10 (mo-men- Overfull \hbox (0.85033pt too wide) in paragraph at lines 1817--1818 []|\T1/ptm/m/it/10 adjointL2ConvergenceAbs| [26] [27] [28] [29] Overfull \hbox (16.57002pt too wide) in paragraph at lines 1917--1918 []|\T1/ptm/m/it/10 dissipationLumpingParameter| Underfull \hbox (badness 6412) in paragraph at lines 1952--1954 []|\T1/ptm/m/n/10 The type of pre-con-di- Overfull \hbox (13.39014pt too wide) in paragraph at lines 2018--2019 []|\T1/ptm/m/it/10 applyAdjointPCSubspaceSize| [30] [31] [32] [33] [34] [35] [36] [37] [38] Chapter 6. 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[69] [70] Underfull \hbox (badness 10000) in paragraph at lines 4801--4802 \T1/ptm/m/n/10 The main Python meth-ods for deriva-tive seed ma-nip-u-la-tion i n AD-flow are Underfull \hbox (badness 5431) in paragraph at lines 4801--4802 \T1/pcr/m/n/10 computeJacobianVectorProductFwd \T1/ptm/m/n/10 and \T1/pcr/m/n/1 0 computeJacobianVectorProductBwd\T1/ptm/m/n/10 , both lo-cated Underfull \hbox (badness 10000) in paragraph at lines 4821--4822 []\T1/ptm/m/n/10 The re-verse mas-ter (\T1/pcr/m/n/10 master_b\T1/ptm/m/n/10 ) rou-tine is wrapped by a thin wrap-per which is the [71] [72] No file mdolab-adflow.ind. Package longtable Warning: Table widths have changed. Rerun LaTeX. [73] (./mdolab-adflow.aux) Package rerunfilecheck Warning: File `mdolab-adflow.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on mdolab-adflow.pdf (77 pages, 345318 bytes). Transcript written on mdolab-adflow.log. Latexmk: Index file 'mdolab-adflow.idx' was written Latexmk: Missing input file: 'mdolab-adflow.ind' from line 'No file mdolab-adflow.ind.' Latexmk: References changed. Latexmk: References changed. Latexmk: Log file says output to 'mdolab-adflow.pdf' Rule 'makeindex mdolab-adflow.idx': File changes, etc: Non-existent destination files: 'mdolab-adflow.ind' ------------ Run number 1 of rule 'makeindex mdolab-adflow.idx' ------------ ------------ Running 'makeindex -s python.ist -o "mdolab-adflow.ind" "mdolab-adflow.idx"' ------------ Latexmk: applying rule 'makeindex mdolab-adflow.idx'... This is makeindex, version 2.15 [TeX Live 2017] (kpathsea + Thai support). Scanning style file ./python.ist.......done (7 attributes redefined, 0 ignored). Scanning input file mdolab-adflow.idx....done (71 entries accepted, 0 rejected). Sorting entries....done (393 comparisons). Generating output file mdolab-adflow.ind....done (116 lines written, 0 warnings). Output written in mdolab-adflow.ind. Transcript written in mdolab-adflow.ilg. Rule 'pdflatex': File changes, etc: Changed files, or newly in use since previous run(s): 'mdolab-adflow.aux' 'mdolab-adflow.ind' ------------ Run number 2 of rule 'pdflatex' ------------ ------------ Running 'pdflatex -interaction=nonstopmode -recorder --jobname="mdolab-adflow" "ADflow.tex"' ------------ Latexmk: applying rule 'pdflatex'... This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./ADflow.tex LaTeX2e <2017-04-15> Babel <3.18> and hyphenation patterns for 84 language(s) loaded. 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(/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [3] [4] Chapter 2. [5] [6] Chapter 3. (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pcr.fd) [7] [8] [9] [10] Chapter 4. Underfull \hbox (badness 10000) in paragraph at lines 530--536 []\T1/ptm/m/n/10 Use \T1/pcr/m/n/10 Output->Select Solver \T1/ptm/m/n/10 to spe c-ify the \T1/pcr/m/n/10 Output Solver \T1/ptm/m/n/10 type as \T1/pcr/m/n/10 CG NS\T1/ptm/m/n/10 . Use Underfull \hbox (badness 10000) in paragraph at lines 530--536 \T1/pcr/m/n/10 Output->Boundary Condition \T1/ptm/m/n/10 to spec-ify the bound- ary con-di-tion type on each sur-faces. [11] [12] Chapter 5. Underfull \hbox (badness 5787) in paragraph at lines 594--597 \T1/ptm/m/n/10 di-tion in-for-ma-tion con- Underfull \hbox (badness 10000) in paragraph at lines 616--618 []|\T1/ptm/m/n/10 Flag to use spec-i-fied Underfull \hbox (badness 5231) in paragraph at lines 683--686 \T1/ptm/m/n/10 pre-ci-sion can ad-versely Underfull \hbox (badness 10000) in paragraph at lines 693--699 \T1/ptm/m/n/10 ^^Pvol-umeVari-ables^^Q may Underfull \hbox (badness 10000) in paragraph at lines 693--699 \T1/ptm/m/n/10 `isoSurface':{`Vx':- Underfull \hbox (badness 10000) in paragraph at lines 706--711 []|\T1/ptm/m/n/10 Only ap-pli-ca-ble for Underfull \hbox (badness 10000) in paragraph at lines 706--711 \T1/ptm/m/n/10 RANS/laminar com-pu- Underfull \hbox (badness 5667) in paragraph at lines 706--711 \T1/ptm/m/n/10 ve-loc-i-ties as the value Underfull \hbox (badness 10000) in paragraph at lines 706--711 \T1/ptm/m/n/10 the ve-loc-i-ties on the Underfull \hbox (badness 10000) in paragraph at lines 718--719 []|\T1/ptm/m/n/10 Set the dis-cretiza-tion Underfull \hbox (badness 10000) in paragraph at lines 718--719 \T1/ptm/m/n/10 gen-er-ally rec-om-mended Underfull \hbox (badness 6608) in paragraph at lines 718--719 \T1/ptm/m/n/10 speed, at the cost of Underfull \hbox (badness 10000) in paragraph at lines 718--719 \T1/ptm/m/n/10 nu-mer-i-cal ac-cu-racy. Underfull \hbox (badness 10000) in paragraph at lines 738--740 []|\T1/ptm/m/n/10 Set the dis-cretiza-tion Underfull \hbox (badness 6412) in paragraph at lines 738--740 \T1/ptm/m/n/10 method for the coarse Underfull \hbox (badness 10000) in paragraph at lines 738--740 \T1/ptm/m/n/10 be the same as the Underfull \hbox (badness 10000) in paragraph at lines 757--762 []|\T1/ptm/m/n/10 Type of \T1/ptm/m/it/10 solver \T1/ptm/m/n/10 or Underfull \hbox (badness 10000) in paragraph at lines 757--762 \T1/ptm/m/n/10 smoother to use with Underfull \hbox (badness 10000) in paragraph at lines 757--762 \T1/ptm/m/n/10 ized diagonal-dominant Underfull \hbox (badness 10000) in paragraph at lines 757--762 \T1/ptm/m/n/10 alternating-direction im- Underfull \hbox (badness 6658) in paragraph at lines 778--783 \T1/ptm/m/n/10 ex-ten-sively tested from Underfull \hbox (badness 7631) in paragraph at lines 778--783 \T1/ptm/m/n/10 been ex-ten-sively tested Underfull \hbox (badness 10000) in paragraph at lines 790--793 \T1/ptm/m/n/10 sim-u-la-tions have been Underfull \hbox (badness 10000) in paragraph at lines 806--807 []\T1/ptm/m/it/10 sae \T1/ptm/m/n/10 - Sparart Underfull \hbox (badness 10000) in paragraph at lines 806--807 \T1/ptm/m/n/10 Allmaras-Edward Underfull \hbox (badness 10000) in paragraph at lines 843--845 []|\T1/ptm/m/n/10 This pa-ram-e-ter af-fects Underfull \hbox (badness 7291) in paragraph at lines 843--845 \T1/ptm/m/n/10 how the to-tal resid-ual Underfull \hbox (badness 10000) in paragraph at lines 843--845 \T1/ptm/m/n/10 what tur-bu-lence model Underfull \hbox (badness 10000) in paragraph at lines 847--848 \T1/ptm/m/it/10 scalar \T1/ptm/m/n/10 - De-fault: Underfull \hbox (badness 10000) in paragraph at lines 850--851 []\T1/ptm/m/it/10 sae \T1/ptm/m/n/10 - Sparart Underfull \hbox (badness 10000) in paragraph at lines 850--851 \T1/ptm/m/n/10 Allmaras-Edward Underfull \hbox (badness 10000) in paragraph at lines 850--851 \T1/ptm/m/n/10 model - NOT Underfull \hbox (badness 10000) in paragraph at lines 853--854 []\T1/ptm/m/it/10 k omega wilcox Underfull \hbox (badness 10000) in paragraph at lines 853--854 \T1/ptm/m/n/10 - NOT IM-PLE- Underfull \hbox (badness 10000) in paragraph at lines 856--857 \T1/ptm/m/n/10 - NOT IM-PLE- Underfull \hbox (badness 10000) in paragraph at lines 876--881 \T1/ptm/m/n/10 This is gen-er-ally not Underfull \hbox (badness 10000) in paragraph at lines 876--881 \T1/ptm/m/n/10 give (po-ten-tially very) Underfull \hbox (badness 10000) in paragraph at lines 876--881 \T1/ptm/m/n/10 poor drag es-ti-mates. Overfull \hbox (13.11995pt too wide) in paragraph at lines 882--883 []|\T1/ptm/m/it/10 useApproximateWallDistance| Underfull \hbox (badness 10000) in paragraph at lines 888--896 \T1/ptm/m/n/10 dis-tance cal-cu-la-tion. Underfull \hbox (badness 10000) in paragraph at lines 888--896 \T1/ptm/m/n/10 ex-act wall dis-tances Underfull \hbox (badness 10000) in paragraph at lines 888--896 \T1/ptm/m/n/10 are com-puted dur-ing Underfull \hbox (badness 10000) in paragraph at lines 888--896 \T1/ptm/m/n/10 ini-tial-iza-tion and the Underfull \hbox (badness 10000) in paragraph at lines 888--896 \T1/ptm/m/n/10 para-met-ric lo-ca-tion of Underfull \hbox (badness 10000) in paragraph at lines 888--896 \T1/ptm/m/n/10 the ge-om-e-try de-forms Underfull \hbox (badness 5288) in paragraph at lines 903--909 \T1/ptm/m/n/10 ary con-di-tions are im- Underfull \hbox (badness 10000) in paragraph at lines 903--909 \T1/ptm/m/n/10 ple-mented for in-vis-cid Underfull \hbox (badness 6808) in paragraph at lines 903--909 \T1/ptm/m/it/10 ex-trap-o-la-tion\T1/ptm/m/n/10 , \T1/ptm/m/it/10 quadratic Underfull \hbox (badness 10000) in paragraph at lines 903--909 \T1/ptm/m/it/10 pres-sure ex-trap-o-la-tion Underfull \hbox (badness 5105) in paragraph at lines 916--920 \T1/ptm/m/n/10 de-fault value need not Overfull \hbox (6.90999pt too wide) in paragraph at lines 921--922 []|\T1/ptm/m/it/10 dissipationScalingExponent| Underfull \hbox (badness 10000) in paragraph at lines 1018--1022 \T1/ptm/m/n/10 mean-ing-ful for RANS Underfull \hbox (badness 10000) in paragraph at lines 1018--1022 \T1/ptm/m/n/10 sim-u-la-tions. Cer-tain Underfull \hbox (badness 10000) in paragraph at lines 1018--1022 \T1/ptm/m/n/10 ben-e-fit from a slight Underfull \hbox (badness 10000) in paragraph at lines 1029--1035 []|\T1/ptm/m/n/10 The Underfull \hbox (badness 10000) in paragraph at lines 1029--1035 \T1/ptm/m/n/10 the Runge-Kutta sim- Underfull \hbox (badness 10000) in paragraph at lines 1029--1035 \T1/ptm/m/n/10 main pa-ram-e-ter that Underfull \hbox (badness 10000) in paragraph at lines 1029--1035 \T1/ptm/m/n/10 de-ter-mines the over-all Underfull \hbox (badness 10000) in paragraph at lines 1029--1035 \T1/ptm/m/n/10 some ex-per-i-men-ta-tion [13] [14] [15] [16] Underfull \hbox (badness 7649) in paragraph at lines 1098--1102 \T1/ptm/m/n/10 could be run with-iout Underfull \hbox (badness 7238) in paragraph at lines 1113--1114 []\T1/ptm/m/it/10 bdf \T1/ptm/m/n/10 - 2nd or-der Underfull \hbox (badness 10000) in paragraph at lines 1113--1114 \T1/ptm/m/n/10 back-wards dif-fer- Underfull \hbox (badness 10000) in paragraph at lines 1122--1123 []\T1/ptm/m/it/10 md \T1/ptm/m/n/10 - Mul-ti-dis- Underfull \hbox (badness 10000) in paragraph at lines 1122--1123 \T1/ptm/m/n/10 ci-plinary (md) Underfull \hbox (badness 10000) in paragraph at lines 1122--1123 \T1/ptm/m/n/10 / Ar-bi-trary La- Underfull \hbox (badness 10000) in paragraph at lines 1122--1123 \T1/ptm/m/n/10 grangian Eu-le-rian Underfull \hbox (badness 5832) in paragraph at lines 1161--1164 []|\T1/ptm/m/n/10 The num-ber of ^^Pspec- Underfull \hbox (badness 7667) in paragraph at lines 1189--1191 []|\T1/ptm/m/n/10 Use a spec-i-fied Mach Underfull \hbox (badness 10000) in paragraph at lines 1189--1191 \T1/ptm/m/n/10 Time spec-tral anal-y-sis. Underfull \hbox (badness 10000) in paragraph at lines 1198--1200 \T1/ptm/m/n/10 Time spec-tral anal-y-sis. Underfull \hbox (badness 6995) in paragraph at lines 1207--1209 \T1/ptm/m/n/10 (pitch) mo-tion for the Underfull \hbox (badness 10000) in paragraph at lines 1216--1218 \T1/ptm/m/n/10 (yaw) mo-tion for the Underfull \hbox (badness 10000) in paragraph at lines 1216--1218 \T1/ptm/m/n/10 Time spec-tral anal-y-sis. Underfull \hbox (badness 10000) in paragraph at lines 1243--1245 []|\T1/ptm/m/n/10 Flag to com-pute time Underfull \hbox (badness 6268) in paragraph at lines 1252--1259 \T1/ptm/m/n/10 1 to 2 or-ders mag-ni- Underfull \hbox (badness 5431) in paragraph at lines 1277--1281 []|\T1/ptm/m/n/10 The con-ver-gence fac-tor Underfull \hbox (badness 10000) in paragraph at lines 1277--1281 \T1/ptm/m/n/10 grids dur-ing multi-grid Underfull \hbox (badness 6078) in paragraph at lines 1288--1292 \T1/ptm/m/n/10 ual can be above the [17] [18] [19] [20] [21] [22] [23] Underfull \hbox (badness 10000) in paragraph at lines 1322--1327 []|\T1/ptm/m/n/10 Type of PETSc KSP Underfull \hbox (badness 6364) in paragraph at lines 1322--1327 \T1/ptm/m/n/10 ^^U Transpose-Free quasi Underfull \hbox (badness 10000) in paragraph at lines 1334--1339 []|\T1/ptm/m/n/10 The rel-a-tive tol-er-ance Underfull \hbox (badness 10000) in paragraph at lines 1334--1339 \T1/ptm/m/n/10 New-ton so-lu-tion tech- Underfull \hbox (badness 5862) in paragraph at lines 1334--1339 \T1/ptm/m/n/10 dif-fi-cult tran-sients have Underfull \hbox (badness 6268) in paragraph at lines 1346--1349 []|\T1/ptm/m/n/10 The size of the GM- Underfull \hbox (badness 5652) in paragraph at lines 1356--1360 \T1/ptm/m/n/10 so-lu-tion; there-after the [24] [25] Underfull \hbox (badness 10000) in paragraph at lines 1578--1580 []|\T1/ptm/m/n/10 List of the vari-ables Underfull \hbox (badness 10000) in paragraph at lines 1578--1580 \T1/ptm/m/n/10 whose con-ver-gence Underfull \hbox (badness 10000) in paragraph at lines 1578--1580 \T1/ptm/m/n/10 should be mon-i-tored. Underfull \hbox (badness 10000) in paragraph at lines 1582--1583 []\T1/ptm/m/it/10 resrho \T1/ptm/m/n/10 (den-sity Underfull \hbox (badness 10000) in paragraph at lines 1585--1586 []\T1/ptm/m/it/10 resmom \T1/ptm/m/n/10 (mo-men- Underfull \hbox (badness 10000) in paragraph at lines 1603--1604 []\T1/ptm/m/it/10 cd \T1/ptm/m/n/10 (drag co-ef-fi- Underfull \hbox (badness 10000) in paragraph at lines 1612--1613 []\T1/ptm/m/it/10 cfx \T1/ptm/m/n/10 (force co- Underfull \hbox (badness 10000) in paragraph at lines 1612--1613 \T1/ptm/m/n/10 ef-fi-cient in x- Underfull \hbox (badness 10000) in paragraph at lines 1615--1616 []\T1/ptm/m/it/10 cfy \T1/ptm/m/n/10 (force co- Underfull \hbox (badness 10000) in paragraph at lines 1615--1616 \T1/ptm/m/n/10 ef-fi-cient in y- Underfull \hbox (badness 10000) in paragraph at lines 1618--1619 []\T1/ptm/m/it/10 cfz \T1/ptm/m/n/10 (force co- Underfull \hbox (badness 10000) in paragraph at lines 1618--1619 \T1/ptm/m/n/10 ef-fi-cient in z- Underfull \hbox (badness 10000) in paragraph at lines 1621--1622 []\T1/ptm/m/it/10 cmx \T1/ptm/m/n/10 (mo-ment Underfull \hbox (badness 10000) in paragraph at lines 1621--1622 \T1/ptm/m/n/10 co-ef-fi-cient in Underfull \hbox (badness 10000) in paragraph at lines 1624--1625 []\T1/ptm/m/it/10 cmy \T1/ptm/m/n/10 (mo-ment Underfull \hbox (badness 10000) in paragraph at lines 1624--1625 \T1/ptm/m/n/10 co-ef-fi-cient in Underfull \hbox (badness 10000) in paragraph at lines 1627--1628 []\T1/ptm/m/it/10 cmz \T1/ptm/m/n/10 (mo-ment Underfull \hbox (badness 10000) in paragraph at lines 1627--1628 \T1/ptm/m/n/10 co-ef-fi-cient in Underfull \hbox (badness 10000) in paragraph at lines 1630--1631 []\T1/ptm/m/it/10 hdiff \T1/ptm/m/n/10 (max-i-mum Underfull \hbox (badness 10000) in paragraph at lines 1630--1631 \T1/ptm/m/n/10 rel-a-tive dif-fer-ence Underfull \hbox (badness 10000) in paragraph at lines 1630--1631 \T1/ptm/m/n/10 be-tween H and Underfull \hbox (badness 10000) in paragraph at lines 1633--1634 []\T1/ptm/m/it/10 mach \T1/ptm/m/n/10 (max-i-mum Underfull \hbox (badness 10000) in paragraph at lines 1639--1640 []\T1/ptm/m/it/10 eddyv \T1/ptm/m/n/10 (max-i-mum Underfull \hbox (badness 10000) in paragraph at lines 1648--1649 []|\T1/ptm/m/n/10 [`cp','vx', `vy', `vz', Underfull \hbox (badness 7012) in paragraph at lines 1680--1681 []\T1/ptm/m/it/10 cf \T1/ptm/m/n/10 (mag-ni-tude of Underfull \hbox (badness 10000) in paragraph at lines 1712--1714 []|\T1/ptm/m/n/10 The vari-ables which Underfull \hbox (badness 10000) in paragraph at lines 1712--1714 \T1/ptm/m/n/10 restart, writ-ten to the Underfull \hbox (badness 10000) in paragraph at lines 1712--1714 \T1/ptm/m/n/10 CGNS vol-ume so-lu- Underfull \hbox (badness 10000) in paragraph at lines 1749--1750 []\T1/ptm/m/it/10 macht \T1/ptm/m/n/10 (tur-bu-lent Underfull \hbox (badness 10000) in paragraph at lines 1764--1765 []\T1/ptm/m/it/10 resrho \T1/ptm/m/n/10 (den-sity Underfull \hbox (badness 10000) in paragraph at lines 1767--1768 []\T1/ptm/m/it/10 resmom \T1/ptm/m/n/10 (mo-men- Overfull \hbox (0.85033pt too wide) in paragraph at lines 1817--1818 []|\T1/ptm/m/it/10 adjointL2ConvergenceAbs| [26] [27] [28] [29] Overfull \hbox (16.57002pt too wide) in paragraph at lines 1917--1918 []|\T1/ptm/m/it/10 dissipationLumpingParameter| Underfull \hbox (badness 6412) in paragraph at lines 1952--1954 []|\T1/ptm/m/n/10 The type of pre-con-di- Overfull \hbox (13.39014pt too wide) in paragraph at lines 2018--2019 []|\T1/ptm/m/it/10 applyAdjointPCSubspaceSize| [30] [31] [32] [33] [34] [35] [36] [37] [38] Chapter 6. Underfull \hbox (badness 10000) in paragraph at lines 2136--2137 []|[][]\T1/pcr/m/sl/10 addFunction[][]\T1/ptm/m/n/10 (self, func-Name, group-Na me[, Overfull \hbox (2.64201pt too wide) in paragraph at lines 2296--2297 []|[][]\T1/pcr/m/sl/10 getUniqueSpatialPerturbationNorm[][]\T1/ptm/m/n/10 (self , Underfull \hbox (badness 10000) in paragraph at lines 2311--2312 []|[][]\T1/pcr/m/sl/10 mapVector[][]\T1/ptm/m/n/10 (self, vec1, group-Name1, gr oup- Underfull \hbox (badness 10000) in paragraph at lines 2316--2317 []|[][]\T1/pcr/m/sl/10 propagateUncertainty[][]\T1/ptm/m/n/10 (self, aero-Prob- lem[, [39] Underfull \hbox (badness 10000) in paragraph at lines 2371--2372 []|[][]\T1/pcr/m/sl/10 setRotationRate[][]\T1/ptm/m/n/10 (self, rot-Cen-ter, ro -tRate[, Underfull \hbox (badness 10000) in paragraph at lines 2381--2382 []|[][]\T1/pcr/m/sl/10 setSurfaceCoordinates[][]\T1/ptm/m/n/10 (self, co-or-di- nates[, [40] Underfull \hbox (badness 10000) in paragraph at lines 2441--2442 []|[][]\T1/pcr/m/sl/10 writeLiftDistributionFile[][]\T1/ptm/m/n/10 (self, file- Underfull \hbox (badness 10000) in paragraph at lines 2456--2457 []|[][]\T1/pcr/m/sl/10 writeSolution[][]\T1/ptm/m/n/10 (self[, out-put-Dir, bas e-Name, Underfull \hbox (badness 10000) in paragraph at lines 2461--2462 []|[][]\T1/pcr/m/sl/10 writeSurfaceSensitivity[][]\T1/ptm/m/n/10 (self, file-Na me, Underfull \hbox (badness 10000) in paragraph at lines 2471--2472 []|[][]\T1/pcr/m/sl/10 writeSurfaceSolutionFileTecplot[][]\T1/ptm/m/n/10 (self, [41] Overfull \hbox (6.0pt too wide) in paragraph at lines 2510--2510 []| Overfull \hbox (6.0pt too wide) in paragraph at lines 2510--2510 []| Overfull \hbox (6.0pt too wide) in paragraph at lines 2510--2510 []| Overfull \hbox (6.0pt too wide) in paragraph at lines 2510--2510 []| Overfull \hbox (6.0pt too wide) in paragraph at lines 2510--2510 []| Overfull \hbox (6.0pt too wide) in paragraph at lines 2510--2510 []| Overfull \hbox (6.0pt too wide) in paragraph at lines 2510--2510 []| [42] [43] Underfull \hbox (badness 10000) in paragraph at lines 2769--2769 []\T1/ptm/m/it/10 self\T1/ptm/m/n/10 , \T1/ptm/m/it/10 res-Bar=None\T1/ptm/m/n/ 10 , \T1/ptm/m/it/10 funcs-Bar=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 fBar=None\T 1/ptm/m/n/10 , Underfull \hbox (badness 6157) in paragraph at lines 2769--2769 \T1/ptm/m/it/10 wDeriv=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 xVDeriv=None\T1/ptm /m/n/10 , \T1/ptm/m/it/10 xS-Deriv=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 xD- [44] Underfull \hbox (badness 10000) in paragraph at lines 2823--2823 []\T1/ptm/m/it/10 self\T1/ptm/m/n/10 , \T1/ptm/m/it/10 xD-v-Dot=None\T1/ptm/m/n /10 , \T1/ptm/m/it/10 xS-Dot=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 xV-Dot=None\T 1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2823--2823 \T1/ptm/m/it/10 wDot=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 resid-u-alDeriv=False \T1/ptm/m/n/10 , \T1/ptm/m/it/10 funcDeriv=False\T1/ptm/m/n/10 , [45] [46] [47] [48] [49] [50] [51] Underfull \hbox (badness 10000) in paragraph at lines 3768--3777 []\T1/ptm/m/n/10 [dict] Dic-tio-nary of func-tion DV pairs to solve: {`func':{` dv':str, [52] [53] Underfull \hbox (badness 7168) in paragraph at lines 3949--3951 []\T1/ptm/m/n/10 only used from an ex-ter-nal [54] Chapter 7. [55] [56] [57] [58] [59] [60] [61] [62] [63] [64] [65] [66] Chapter 8. [67] [68] Chapter 9. [69] [70] Underfull \hbox (badness 10000) in paragraph at lines 4801--4802 \T1/ptm/m/n/10 The main Python meth-ods for deriva-tive seed ma-nip-u-la-tion i n AD-flow are Underfull \hbox (badness 5431) in paragraph at lines 4801--4802 \T1/pcr/m/n/10 computeJacobianVectorProductFwd \T1/ptm/m/n/10 and \T1/pcr/m/n/1 0 computeJacobianVectorProductBwd\T1/ptm/m/n/10 , both lo-cated Underfull \hbox (badness 10000) in paragraph at lines 4821--4822 []\T1/ptm/m/n/10 The re-verse mas-ter (\T1/pcr/m/n/10 master_b\T1/ptm/m/n/10 ) rou-tine is wrapped by a thin wrap-per which is the [71] [72] (./mdolab-adflow.ind [73] [74] Underfull \hbox (badness 10000) in paragraph at lines 8--9 []\T1/pcr/m/n/10 addActuatorRegion() Underfull \hbox (badness 10000) in paragraph at lines 9--10 []\T1/pcr/m/n/10 addFunction() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 python.pyADflow. ADFLOW Underfull \hbox (badness 10000) in paragraph at lines 10--11 []\T1/pcr/m/n/10 addFunctions() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 python.pyADflow .ADFLOW Underfull \hbox (badness 10000) in paragraph at lines 11--12 []\T1/pcr/m/n/10 addIntegrationSurface() Underfull \hbox (badness 10000) in paragraph at lines 12--13 []\T1/pcr/m/n/10 addLiftDistribution() Underfull \hbox (badness 10000) in paragraph at lines 14--15 []\T1/pcr/m/n/10 addUserFunction() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 python.pyADf low.ADFLOW Underfull \hbox (badness 10000) in paragraph at lines 16--17 []\T1/pcr/m/n/10 advanceTimeStepCounter() Underfull \hbox (badness 10000) in paragraph at lines 20--21 []\T1/pcr/m/n/10 checkPartitioning() Underfull \hbox (badness 10000) in paragraph at lines 21--23 []\T1/pcr/m/n/10 computeJacobianVectorProductBwd() Underfull \hbox (badness 10000) in paragraph at lines 23--25 []\T1/pcr/m/n/10 computeJacobianVectorProductFwd() Underfull \hbox (badness 10000) in paragraph at lines 25--27 []\T1/pcr/m/n/10 computeStabilityParameters() Underfull \hbox (badness 10000) in paragraph at lines 27--28 []\T1/pcr/m/n/10 createSlaveAeroProblem() Underfull \hbox (badness 10000) in paragraph at lines 31--32 []\T1/pcr/m/n/10 evalFunctions() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 python.pyADflo w.ADFLOW Underfull \hbox (badness 10000) in paragraph at lines 32--33 []\T1/pcr/m/n/10 evalFunctionsSens() Underfull \hbox (badness 10000) in paragraph at lines 37--38 []\T1/pcr/m/n/10 getAdjointResNorms() Underfull \hbox (badness 10000) in paragraph at lines 38--39 []\T1/pcr/m/n/10 getAdjointStateSize() Underfull \hbox (badness 10000) in paragraph at lines 40--41 []\T1/pcr/m/n/10 getHeatFluxes() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 python.pyADflo w.ADFLOW Underfull \hbox (badness 10000) in paragraph at lines 41--42 []\T1/pcr/m/n/10 getPointSetName() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 python.pyADf low.ADFLOW Underfull \hbox (badness 10000) in paragraph at lines 42--43 []\T1/pcr/m/n/10 getResidual() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 python.pyADflow. 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(rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on mdolab-adflow.pdf (80 pages, 356696 bytes). Transcript written on mdolab-adflow.log. Latexmk: Index file 'mdolab-adflow.idx' was written Latexmk: References changed. Latexmk: Log file says output to 'mdolab-adflow.pdf' Rule 'pdflatex': File changes, etc: Changed files, or newly in use since previous run(s): 'mdolab-adflow.aux' 'mdolab-adflow.out' 'mdolab-adflow.toc' ------------ Run number 3 of rule 'pdflatex' ------------ ------------ Running 'pdflatex -interaction=nonstopmode -recorder --jobname="mdolab-adflow" "ADflow.tex"' ------------ Latexmk: applying rule 'pdflatex'... 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Underfull \hbox (badness 10000) in paragraph at lines 738--740 []|\T1/ptm/m/n/10 Set the dis-cretiza-tion Underfull \hbox (badness 6412) in paragraph at lines 738--740 \T1/ptm/m/n/10 method for the coarse Underfull \hbox (badness 10000) in paragraph at lines 738--740 \T1/ptm/m/n/10 be the same as the Underfull \hbox (badness 10000) in paragraph at lines 757--762 []|\T1/ptm/m/n/10 Type of \T1/ptm/m/it/10 solver \T1/ptm/m/n/10 or Underfull \hbox (badness 10000) in paragraph at lines 757--762 \T1/ptm/m/n/10 smoother to use with Underfull \hbox (badness 10000) in paragraph at lines 757--762 \T1/ptm/m/n/10 ized diagonal-dominant Underfull \hbox (badness 10000) in paragraph at lines 757--762 \T1/ptm/m/n/10 alternating-direction im- Underfull \hbox (badness 6658) in paragraph at lines 778--783 \T1/ptm/m/n/10 ex-ten-sively tested from Underfull \hbox (badness 7631) in paragraph at lines 778--783 \T1/ptm/m/n/10 been ex-ten-sively tested Underfull \hbox (badness 10000) in paragraph at lines 790--793 \T1/ptm/m/n/10 sim-u-la-tions have been Underfull \hbox (badness 10000) in paragraph at lines 806--807 []\T1/ptm/m/it/10 sae \T1/ptm/m/n/10 - Sparart Underfull \hbox (badness 10000) in paragraph at lines 806--807 \T1/ptm/m/n/10 Allmaras-Edward Underfull \hbox (badness 10000) in paragraph at lines 843--845 []|\T1/ptm/m/n/10 This pa-ram-e-ter af-fects Underfull \hbox (badness 7291) in paragraph at lines 843--845 \T1/ptm/m/n/10 how the to-tal resid-ual Underfull \hbox (badness 10000) in paragraph at lines 843--845 \T1/ptm/m/n/10 what tur-bu-lence model Underfull \hbox (badness 10000) in paragraph at lines 847--848 \T1/ptm/m/it/10 scalar \T1/ptm/m/n/10 - De-fault: Underfull \hbox (badness 10000) in paragraph at lines 850--851 []\T1/ptm/m/it/10 sae \T1/ptm/m/n/10 - Sparart Underfull \hbox (badness 10000) in paragraph at lines 850--851 \T1/ptm/m/n/10 Allmaras-Edward Underfull \hbox (badness 10000) in paragraph at lines 850--851 \T1/ptm/m/n/10 model - NOT Underfull \hbox (badness 10000) in paragraph at lines 853--854 []\T1/ptm/m/it/10 k omega wilcox Underfull \hbox (badness 10000) in paragraph at lines 853--854 \T1/ptm/m/n/10 - NOT IM-PLE- Underfull \hbox (badness 10000) in paragraph at lines 856--857 \T1/ptm/m/n/10 - NOT IM-PLE- Underfull \hbox (badness 10000) in paragraph at lines 876--881 \T1/ptm/m/n/10 This is gen-er-ally not Underfull \hbox (badness 10000) in paragraph at lines 876--881 \T1/ptm/m/n/10 give (po-ten-tially very) Underfull \hbox (badness 10000) in paragraph at lines 876--881 \T1/ptm/m/n/10 poor drag es-ti-mates. 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Underfull \hbox (badness 10000) in paragraph at lines 888--896 \T1/ptm/m/n/10 ex-act wall dis-tances Underfull \hbox (badness 10000) in paragraph at lines 888--896 \T1/ptm/m/n/10 are com-puted dur-ing Underfull \hbox (badness 10000) in paragraph at lines 888--896 \T1/ptm/m/n/10 ini-tial-iza-tion and the Underfull \hbox (badness 10000) in paragraph at lines 888--896 \T1/ptm/m/n/10 para-met-ric lo-ca-tion of Underfull \hbox (badness 10000) in paragraph at lines 888--896 \T1/ptm/m/n/10 the ge-om-e-try de-forms Underfull \hbox (badness 5288) in paragraph at lines 903--909 \T1/ptm/m/n/10 ary con-di-tions are im- Underfull \hbox (badness 10000) in paragraph at lines 903--909 \T1/ptm/m/n/10 ple-mented for in-vis-cid Underfull \hbox (badness 6808) in paragraph at lines 903--909 \T1/ptm/m/it/10 ex-trap-o-la-tion\T1/ptm/m/n/10 , \T1/ptm/m/it/10 quadratic Underfull \hbox (badness 10000) in paragraph at lines 903--909 \T1/ptm/m/it/10 pres-sure ex-trap-o-la-tion Underfull \hbox (badness 5105) in paragraph at lines 916--920 \T1/ptm/m/n/10 de-fault value need not Overfull \hbox (6.90999pt too wide) in paragraph at lines 921--922 []|\T1/ptm/m/it/10 dissipationScalingExponent| Underfull \hbox (badness 10000) in paragraph at lines 1018--1022 \T1/ptm/m/n/10 mean-ing-ful for RANS Underfull \hbox (badness 10000) in paragraph at lines 1018--1022 \T1/ptm/m/n/10 sim-u-la-tions. Cer-tain Underfull \hbox (badness 10000) in paragraph at lines 1018--1022 \T1/ptm/m/n/10 ben-e-fit from a slight Underfull \hbox (badness 10000) in paragraph at lines 1029--1035 []|\T1/ptm/m/n/10 The Underfull \hbox (badness 10000) in paragraph at lines 1029--1035 \T1/ptm/m/n/10 the Runge-Kutta sim- Underfull \hbox (badness 10000) in paragraph at lines 1029--1035 \T1/ptm/m/n/10 main pa-ram-e-ter that Underfull \hbox (badness 10000) in paragraph at lines 1029--1035 \T1/ptm/m/n/10 de-ter-mines the over-all Underfull \hbox (badness 10000) in paragraph at lines 1029--1035 \T1/ptm/m/n/10 some ex-per-i-men-ta-tion [13] [14] [15] [16] Underfull \hbox (badness 7649) in paragraph at lines 1098--1102 \T1/ptm/m/n/10 could be run with-iout Underfull \hbox (badness 7238) in paragraph at lines 1113--1114 []\T1/ptm/m/it/10 bdf \T1/ptm/m/n/10 - 2nd or-der Underfull \hbox (badness 10000) in paragraph at lines 1113--1114 \T1/ptm/m/n/10 back-wards dif-fer- Underfull \hbox (badness 10000) in paragraph at lines 1122--1123 []\T1/ptm/m/it/10 md \T1/ptm/m/n/10 - Mul-ti-dis- Underfull \hbox (badness 10000) in paragraph at lines 1122--1123 \T1/ptm/m/n/10 ci-plinary (md) Underfull \hbox (badness 10000) in paragraph at lines 1122--1123 \T1/ptm/m/n/10 / Ar-bi-trary La- Underfull \hbox (badness 10000) in paragraph at lines 1122--1123 \T1/ptm/m/n/10 grangian Eu-le-rian Underfull \hbox (badness 5832) in paragraph at lines 1161--1164 []|\T1/ptm/m/n/10 The num-ber of ^^Pspec- Underfull \hbox (badness 7667) in paragraph at lines 1189--1191 []|\T1/ptm/m/n/10 Use a spec-i-fied Mach Underfull \hbox (badness 10000) in paragraph at lines 1189--1191 \T1/ptm/m/n/10 Time spec-tral anal-y-sis. Underfull \hbox (badness 10000) in paragraph at lines 1198--1200 \T1/ptm/m/n/10 Time spec-tral anal-y-sis. Underfull \hbox (badness 6995) in paragraph at lines 1207--1209 \T1/ptm/m/n/10 (pitch) mo-tion for the Underfull \hbox (badness 10000) in paragraph at lines 1216--1218 \T1/ptm/m/n/10 (yaw) mo-tion for the Underfull \hbox (badness 10000) in paragraph at lines 1216--1218 \T1/ptm/m/n/10 Time spec-tral anal-y-sis. Underfull \hbox (badness 10000) in paragraph at lines 1243--1245 []|\T1/ptm/m/n/10 Flag to com-pute time Underfull \hbox (badness 6268) in paragraph at lines 1252--1259 \T1/ptm/m/n/10 1 to 2 or-ders mag-ni- Underfull \hbox (badness 5431) in paragraph at lines 1277--1281 []|\T1/ptm/m/n/10 The con-ver-gence fac-tor Underfull \hbox (badness 10000) in paragraph at lines 1277--1281 \T1/ptm/m/n/10 grids dur-ing multi-grid Underfull \hbox (badness 6078) in paragraph at lines 1288--1292 \T1/ptm/m/n/10 ual can be above the [17] [18] [19] [20] [21] [22] [23] Underfull \hbox (badness 10000) in paragraph at lines 1322--1327 []|\T1/ptm/m/n/10 Type of PETSc KSP Underfull \hbox (badness 6364) in paragraph at lines 1322--1327 \T1/ptm/m/n/10 ^^U Transpose-Free quasi Underfull \hbox (badness 10000) in paragraph at lines 1334--1339 []|\T1/ptm/m/n/10 The rel-a-tive tol-er-ance Underfull \hbox (badness 10000) in paragraph at lines 1334--1339 \T1/ptm/m/n/10 New-ton so-lu-tion tech- Underfull \hbox (badness 5862) in paragraph at lines 1334--1339 \T1/ptm/m/n/10 dif-fi-cult tran-sients have Underfull \hbox (badness 6268) in paragraph at lines 1346--1349 []|\T1/ptm/m/n/10 The size of the GM- Underfull \hbox (badness 5652) in paragraph at lines 1356--1360 \T1/ptm/m/n/10 so-lu-tion; there-after the [24] [25] Underfull \hbox (badness 10000) in paragraph at lines 1578--1580 []|\T1/ptm/m/n/10 List of the vari-ables Underfull \hbox (badness 10000) in paragraph at lines 1578--1580 \T1/ptm/m/n/10 whose con-ver-gence Underfull \hbox (badness 10000) in paragraph at lines 1578--1580 \T1/ptm/m/n/10 should be mon-i-tored. Underfull \hbox (badness 10000) in paragraph at lines 1582--1583 []\T1/ptm/m/it/10 resrho \T1/ptm/m/n/10 (den-sity Underfull \hbox (badness 10000) in paragraph at lines 1585--1586 []\T1/ptm/m/it/10 resmom \T1/ptm/m/n/10 (mo-men- Underfull \hbox (badness 10000) in paragraph at lines 1603--1604 []\T1/ptm/m/it/10 cd \T1/ptm/m/n/10 (drag co-ef-fi- Underfull \hbox (badness 10000) in paragraph at lines 1612--1613 []\T1/ptm/m/it/10 cfx \T1/ptm/m/n/10 (force co- Underfull \hbox (badness 10000) in paragraph at lines 1612--1613 \T1/ptm/m/n/10 ef-fi-cient in x- Underfull \hbox (badness 10000) in paragraph at lines 1615--1616 []\T1/ptm/m/it/10 cfy \T1/ptm/m/n/10 (force co- Underfull \hbox (badness 10000) in paragraph at lines 1615--1616 \T1/ptm/m/n/10 ef-fi-cient in y- Underfull \hbox (badness 10000) in paragraph at lines 1618--1619 []\T1/ptm/m/it/10 cfz \T1/ptm/m/n/10 (force co- Underfull \hbox (badness 10000) in paragraph at lines 1618--1619 \T1/ptm/m/n/10 ef-fi-cient in z- Underfull \hbox (badness 10000) in paragraph at lines 1621--1622 []\T1/ptm/m/it/10 cmx \T1/ptm/m/n/10 (mo-ment Underfull \hbox (badness 10000) in paragraph at lines 1621--1622 \T1/ptm/m/n/10 co-ef-fi-cient in Underfull \hbox (badness 10000) in paragraph at lines 1624--1625 []\T1/ptm/m/it/10 cmy \T1/ptm/m/n/10 (mo-ment Underfull \hbox (badness 10000) in paragraph at lines 1624--1625 \T1/ptm/m/n/10 co-ef-fi-cient in Underfull \hbox (badness 10000) in paragraph at lines 1627--1628 []\T1/ptm/m/it/10 cmz \T1/ptm/m/n/10 (mo-ment Underfull \hbox (badness 10000) in paragraph at lines 1627--1628 \T1/ptm/m/n/10 co-ef-fi-cient in Underfull \hbox (badness 10000) in paragraph at lines 1630--1631 []\T1/ptm/m/it/10 hdiff \T1/ptm/m/n/10 (max-i-mum Underfull \hbox (badness 10000) in paragraph at lines 1630--1631 \T1/ptm/m/n/10 rel-a-tive dif-fer-ence Underfull \hbox (badness 10000) in paragraph at lines 1630--1631 \T1/ptm/m/n/10 be-tween H and Underfull \hbox (badness 10000) in paragraph at lines 1633--1634 []\T1/ptm/m/it/10 mach \T1/ptm/m/n/10 (max-i-mum Underfull \hbox (badness 10000) in paragraph at lines 1639--1640 []\T1/ptm/m/it/10 eddyv \T1/ptm/m/n/10 (max-i-mum Underfull \hbox (badness 10000) in paragraph at lines 1648--1649 []|\T1/ptm/m/n/10 [`cp','vx', `vy', `vz', Underfull \hbox (badness 7012) in paragraph at lines 1680--1681 []\T1/ptm/m/it/10 cf \T1/ptm/m/n/10 (mag-ni-tude of Underfull \hbox (badness 10000) in paragraph at lines 1712--1714 []|\T1/ptm/m/n/10 The vari-ables which Underfull \hbox (badness 10000) in paragraph at lines 1712--1714 \T1/ptm/m/n/10 restart, writ-ten to the Underfull \hbox (badness 10000) in paragraph at lines 1712--1714 \T1/ptm/m/n/10 CGNS vol-ume so-lu- Underfull \hbox (badness 10000) in paragraph at lines 1749--1750 []\T1/ptm/m/it/10 macht \T1/ptm/m/n/10 (tur-bu-lent Underfull \hbox (badness 10000) in paragraph at lines 1764--1765 []\T1/ptm/m/it/10 resrho \T1/ptm/m/n/10 (den-sity Underfull \hbox (badness 10000) in paragraph at lines 1767--1768 []\T1/ptm/m/it/10 resmom \T1/ptm/m/n/10 (mo-men- Overfull \hbox (0.85033pt too wide) in paragraph at lines 1817--1818 []|\T1/ptm/m/it/10 adjointL2ConvergenceAbs| [26] [27] [28] [29] Overfull \hbox (16.57002pt too wide) in paragraph at lines 1917--1918 []|\T1/ptm/m/it/10 dissipationLumpingParameter| Underfull \hbox (badness 6412) in paragraph at lines 1952--1954 []|\T1/ptm/m/n/10 The type of pre-con-di- Overfull \hbox (13.39014pt too wide) in paragraph at lines 2018--2019 []|\T1/ptm/m/it/10 applyAdjointPCSubspaceSize| [30] [31] [32] [33] [34] [35] [36] [37] [38] Chapter 6. Underfull \hbox (badness 10000) in paragraph at lines 2136--2137 []|[][]\T1/pcr/m/sl/10 addFunction[][]\T1/ptm/m/n/10 (self, func-Name, group-Na me[, Overfull \hbox (2.64201pt too wide) in paragraph at lines 2296--2297 []|[][]\T1/pcr/m/sl/10 getUniqueSpatialPerturbationNorm[][]\T1/ptm/m/n/10 (self , Underfull \hbox (badness 10000) in paragraph at lines 2311--2312 []|[][]\T1/pcr/m/sl/10 mapVector[][]\T1/ptm/m/n/10 (self, vec1, group-Name1, gr oup- Underfull \hbox (badness 10000) in paragraph at lines 2316--2317 []|[][]\T1/pcr/m/sl/10 propagateUncertainty[][]\T1/ptm/m/n/10 (self, aero-Prob- lem[, [39] Underfull \hbox (badness 10000) in paragraph at lines 2371--2372 []|[][]\T1/pcr/m/sl/10 setRotationRate[][]\T1/ptm/m/n/10 (self, rot-Cen-ter, ro -tRate[, Underfull \hbox (badness 10000) in paragraph at lines 2381--2382 []|[][]\T1/pcr/m/sl/10 setSurfaceCoordinates[][]\T1/ptm/m/n/10 (self, co-or-di- nates[, [40] Underfull \hbox (badness 10000) in paragraph at lines 2441--2442 []|[][]\T1/pcr/m/sl/10 writeLiftDistributionFile[][]\T1/ptm/m/n/10 (self, file- Underfull \hbox (badness 10000) in paragraph at lines 2456--2457 []|[][]\T1/pcr/m/sl/10 writeSolution[][]\T1/ptm/m/n/10 (self[, out-put-Dir, bas e-Name, Underfull \hbox (badness 10000) in paragraph at lines 2461--2462 []|[][]\T1/pcr/m/sl/10 writeSurfaceSensitivity[][]\T1/ptm/m/n/10 (self, file-Na me, Underfull \hbox (badness 10000) in paragraph at lines 2471--2472 []|[][]\T1/pcr/m/sl/10 writeSurfaceSolutionFileTecplot[][]\T1/ptm/m/n/10 (self, [41] Overfull \hbox (6.0pt too wide) in paragraph at lines 2510--2510 []| Overfull \hbox (6.0pt too wide) in paragraph at lines 2510--2510 []| Overfull \hbox (6.0pt too wide) in paragraph at lines 2510--2510 []| Overfull \hbox (6.0pt too wide) in paragraph at lines 2510--2510 []| Overfull \hbox (6.0pt too wide) in paragraph at lines 2510--2510 []| Overfull \hbox (6.0pt too wide) in paragraph at lines 2510--2510 []| Overfull \hbox (6.0pt too wide) in paragraph at lines 2510--2510 []| [42] [43] Underfull \hbox (badness 10000) in paragraph at lines 2769--2769 []\T1/ptm/m/it/10 self\T1/ptm/m/n/10 , \T1/ptm/m/it/10 res-Bar=None\T1/ptm/m/n/ 10 , \T1/ptm/m/it/10 funcs-Bar=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 fBar=None\T 1/ptm/m/n/10 , Underfull \hbox (badness 6157) in paragraph at lines 2769--2769 \T1/ptm/m/it/10 wDeriv=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 xVDeriv=None\T1/ptm /m/n/10 , \T1/ptm/m/it/10 xS-Deriv=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 xD- [44] Underfull \hbox (badness 10000) in paragraph at lines 2823--2823 []\T1/ptm/m/it/10 self\T1/ptm/m/n/10 , \T1/ptm/m/it/10 xD-v-Dot=None\T1/ptm/m/n /10 , \T1/ptm/m/it/10 xS-Dot=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 xV-Dot=None\T 1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2823--2823 \T1/ptm/m/it/10 wDot=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 resid-u-alDeriv=False \T1/ptm/m/n/10 , \T1/ptm/m/it/10 funcDeriv=False\T1/ptm/m/n/10 , [45] [46] [47] [48] [49] [50] [51] Underfull \hbox (badness 10000) in paragraph at lines 3768--3777 []\T1/ptm/m/n/10 [dict] Dic-tio-nary of func-tion DV pairs to solve: {`func':{` dv':str, [52] [53] Underfull \hbox (badness 7168) in paragraph at lines 3949--3951 []\T1/ptm/m/n/10 only used from an ex-ter-nal [54] Chapter 7. [55] [56] [57] [58] [59] [60] [61] [62] [63] [64] [65] [66] Chapter 8. [67] [68] Chapter 9. [69] [70] Underfull \hbox (badness 10000) in paragraph at lines 4801--4802 \T1/ptm/m/n/10 The main Python meth-ods for deriva-tive seed ma-nip-u-la-tion i n AD-flow are Underfull \hbox (badness 5431) in paragraph at lines 4801--4802 \T1/pcr/m/n/10 computeJacobianVectorProductFwd \T1/ptm/m/n/10 and \T1/pcr/m/n/1 0 computeJacobianVectorProductBwd\T1/ptm/m/n/10 , both lo-cated Underfull \hbox (badness 10000) in paragraph at lines 4821--4822 []\T1/ptm/m/n/10 The re-verse mas-ter (\T1/pcr/m/n/10 master_b\T1/ptm/m/n/10 ) rou-tine is wrapped by a thin wrap-per which is the [71] [72] (./mdolab-adflow.ind [73] [74] Underfull \hbox (badness 10000) in paragraph at lines 8--9 []\T1/pcr/m/n/10 addActuatorRegion() Underfull \hbox (badness 10000) in paragraph at lines 9--10 []\T1/pcr/m/n/10 addFunction() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 python.pyADflow. ADFLOW Underfull \hbox (badness 10000) in paragraph at lines 10--11 []\T1/pcr/m/n/10 addFunctions() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 python.pyADflow .ADFLOW Underfull \hbox (badness 10000) in paragraph at lines 11--12 []\T1/pcr/m/n/10 addIntegrationSurface() Underfull \hbox (badness 10000) in paragraph at lines 12--13 []\T1/pcr/m/n/10 addLiftDistribution() Underfull \hbox (badness 10000) in paragraph at lines 14--15 []\T1/pcr/m/n/10 addUserFunction() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 python.pyADf low.ADFLOW Underfull \hbox (badness 10000) in paragraph at lines 16--17 []\T1/pcr/m/n/10 advanceTimeStepCounter() Underfull \hbox (badness 10000) in paragraph at lines 20--21 []\T1/pcr/m/n/10 checkPartitioning() Underfull \hbox (badness 10000) in paragraph at lines 21--23 []\T1/pcr/m/n/10 computeJacobianVectorProductBwd() Underfull \hbox (badness 10000) in paragraph at lines 23--25 []\T1/pcr/m/n/10 computeJacobianVectorProductFwd() Underfull \hbox (badness 10000) in paragraph at lines 25--27 []\T1/pcr/m/n/10 computeStabilityParameters() Underfull \hbox (badness 10000) in paragraph at lines 27--28 []\T1/pcr/m/n/10 createSlaveAeroProblem() Underfull \hbox (badness 10000) in paragraph at lines 31--32 []\T1/pcr/m/n/10 evalFunctions() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 python.pyADflo w.ADFLOW Underfull \hbox (badness 10000) in paragraph at lines 32--33 []\T1/pcr/m/n/10 evalFunctionsSens() Underfull \hbox (badness 10000) in paragraph at lines 37--38 []\T1/pcr/m/n/10 getAdjointResNorms() Underfull \hbox (badness 10000) in paragraph at lines 38--39 []\T1/pcr/m/n/10 getAdjointStateSize() Underfull \hbox (badness 10000) in paragraph at lines 40--41 []\T1/pcr/m/n/10 getHeatFluxes() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 python.pyADflo w.ADFLOW Underfull \hbox (badness 10000) in paragraph at lines 41--42 []\T1/pcr/m/n/10 getPointSetName() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 python.pyADf low.ADFLOW Underfull \hbox (badness 10000) in paragraph at lines 42--43 []\T1/pcr/m/n/10 getResidual() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 python.pyADflow. ADFLOW Underfull \hbox (badness 10000) in paragraph at lines 43--44 []\T1/pcr/m/n/10 getResNorms() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 python.pyADflow. ADFLOW Underfull \hbox (badness 10000) in paragraph at lines 44--45 []\T1/pcr/m/n/10 getSolution() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 python.pyADflow. ADFLOW Underfull \hbox (badness 10000) in paragraph at lines 45--46 []\T1/pcr/m/n/10 getSolverMeshIndices() Underfull \hbox (badness 10000) in paragraph at lines 46--47 []\T1/pcr/m/n/10 getSpatialPerturbation() Underfull \hbox (badness 10000) in paragraph at lines 47--48 []\T1/pcr/m/n/10 getSpatialSize() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 python.pyADfl ow.ADFLOW Underfull \hbox (badness 10000) in paragraph at lines 48--49 []\T1/pcr/m/n/10 getStatePerturbation() Underfull \hbox (badness 10000) in paragraph at lines 50--51 []\T1/pcr/m/n/10 getStateSize() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 python.pyADflow .ADFLOW Underfull \hbox (badness 10000) in paragraph at lines 51--52 []\T1/pcr/m/n/10 getSurfaceConnectivity() Underfull \hbox (badness 10000) in paragraph at lines 52--53 []\T1/pcr/m/n/10 getSurfacePerturbation() Underfull \hbox (badness 10000) in paragraph at lines 54--56 []\T1/pcr/m/n/10 getUniqueSpatialPerturbationNorm() Underfull \hbox (badness 10000) in paragraph at lines 56--57 []\T1/pcr/m/n/10 globalAdjointPreCon() Underfull \hbox (badness 10000) in paragraph at lines 57--58 []\T1/pcr/m/n/10 globalNKPreCon() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 python.pyADfl ow.ADFLOW [75] Underfull \hbox (badness 10000) in paragraph at lines 65--66 []\T1/pcr/m/n/10 propagateUncertainty() Underfull \hbox (badness 10000) in paragraph at lines 69--70 []\T1/pcr/m/n/10 releaseAdjointMemory() Underfull \hbox (badness 10000) in paragraph at lines 70--71 []\T1/pcr/m/n/10 resetAdjoint() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 python.pyADflow .ADFLOW Underfull \hbox (badness 10000) in paragraph at lines 75--76 []\T1/pcr/m/n/10 saveAdjointMatrix() Underfull \hbox (badness 10000) in paragraph at lines 77--78 []\T1/pcr/m/n/10 setAeroProblem() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 python.pyADfl ow.ADFLOW Underfull \hbox (badness 10000) in paragraph at lines 81--82 []\T1/pcr/m/n/10 setResNorms() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 python.pyADflow. ADFLOW Underfull \hbox (badness 10000) in paragraph at lines 82--83 []\T1/pcr/m/n/10 setRotationRate() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 python.pyADf low.ADFLOW Underfull \hbox (badness 10000) in paragraph at lines 84--85 []\T1/pcr/m/n/10 setSurfaceCoordinates() Underfull \hbox (badness 10000) in paragraph at lines 85--86 []\T1/pcr/m/n/10 setTargetCp() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 python.pyADflow. ADFLOW Underfull \hbox (badness 10000) in paragraph at lines 86--87 []\T1/pcr/m/n/10 setWallTemperature() Underfull \hbox (badness 10000) in paragraph at lines 87--88 []\T1/pcr/m/n/10 solveAdjointForRHS() Underfull \hbox (badness 10000) in paragraph at lines 89--90 []\T1/pcr/m/n/10 solveDirectForRHS() Underfull \hbox (badness 10000) in paragraph at lines 92--93 []\T1/pcr/m/n/10 solveTimeStep() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 python.pyADflo w.ADFLOW Underfull \hbox (badness 10000) in paragraph at lines 93--94 []\T1/pcr/m/n/10 solveTrimCL() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 python.pyADflow. ADFLOW Underfull \hbox (badness 10000) in paragraph at lines 97--98 []\T1/pcr/m/n/10 updateGeometryInfo() Underfull \hbox (badness 10000) in paragraph at lines 101--102 []\T1/pcr/m/n/10 writeForceFile() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 python.pyADfl ow.ADFLOW Underfull \hbox (badness 10000) in paragraph at lines 102--104 []\T1/pcr/m/n/10 writeLiftDistributionFile() Underfull \hbox (badness 10000) in paragraph at lines 104--105 []\T1/pcr/m/n/10 writeMeshFile() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 python.pyADflo w.ADFLOW Underfull \hbox (badness 10000) in paragraph at lines 105--106 []\T1/pcr/m/n/10 writeSlicesFile() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 python.pyADf low.ADFLOW Underfull \hbox (badness 10000) in paragraph at lines 106--107 []\T1/pcr/m/n/10 writeSolution() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 python.pyADflo w.ADFLOW Underfull \hbox (badness 10000) in paragraph at lines 107--109 []\T1/pcr/m/n/10 writeSurfaceSensitivity() Underfull \hbox (badness 10000) in paragraph at lines 109--111 []\T1/pcr/m/n/10 writeSurfaceSolutionFile() Underfull \hbox (badness 10000) in paragraph at lines 111--113 []\T1/pcr/m/n/10 writeSurfaceSolutionFileTecplot() Underfull \hbox (badness 10000) in paragraph at lines 113--115 []\T1/pcr/m/n/10 writeVolumeSolutionFile() [76]) (./mdolab-adflow.aux) ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on mdolab-adflow.pdf (80 pages, 356697 bytes). Transcript written on mdolab-adflow.log. Latexmk: Index file 'mdolab-adflow.idx' was written Latexmk: Log file says output to 'mdolab-adflow.pdf' Latexmk: All targets (mdolab-adflow.pdf) are up-to-date [rtd-command-info] start-time: 2020-04-17T12:48:06.430423Z, end-time: 2020-04-17T12:48:06.623114Z, duration: 0, exit-code: 0 mv -f /home/docs/checkouts/readthedocs.org/user_builds/mdolab-adflow/checkouts/latest/doc/_build/latex/mdolab-adflow.pdf /home/docs/checkouts/readthedocs.org/user_builds/mdolab-adflow/artifacts/latest/sphinx_pdf/mdolab-adflow.pdf [rtd-command-info] start-time: 2020-04-17T12:48:06.851697Z, end-time: 2020-04-17T12:48:10.630580Z, duration: 3, exit-code: 0 python sphinx-build -T -b epub -d _build/doctrees-epub -D language=en . _build/epub Running Sphinx v1.8.5 loading translations [en]... done making output directory... building [mo]: targets for 0 po files that are out of date building [epub]: targets for 12 source files that are out of date updating environment: 12 added, 0 changed, 0 removed reading sources... [ 8%] adjoint reading sources... [ 16%] autodiff reading sources... [ 25%] devguide reading sources... [ 33%] index reading sources... [ 41%] install reading sources... [ 50%] introduction reading sources... [ 58%] meshing reading sources... [ 66%] options reading sources... [ 75%] performance reading sources... [ 83%] pyADflow reading sources... [ 91%] solvers reading sources... 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