Read the Docs build information Build id: 307137 Project: d-wave-systems-dwave-networkx Version: latest Commit: 975d4720c9a74ba3cb866dc0738368013e75250d Date: 2020-03-25T20:49:01.833430Z State: finished Success: True [rtd-command-info] start-time: 2020-03-25T20:49:05.465469Z, end-time: 2020-03-25T20:49:07.008425Z, duration: 1, exit-code: 0 git clone --no-single-branch --depth 50 https://github.com/dwavesystems/dwave_networkx.git . Cloning into '.'... [rtd-command-info] start-time: 2020-03-25T20:49:07.702979Z, end-time: 2020-03-25T20:49:08.036950Z, duration: 0, exit-code: 0 git checkout --force origin/master Note: checking out 'origin/master'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at 975d472 Fix canonical_chimera_labeling to correctly choose a root in a corner [rtd-command-info] start-time: 2020-03-25T20:49:08.863440Z, end-time: 2020-03-25T20:49:09.186206Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2020-03-25T20:49:10.636360Z, end-time: 2020-03-25T20:49:20.207967Z, duration: 9, exit-code: 0 python2.7 -mvirtualenv New python executable in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/envs/latest/bin/python2.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/envs/latest/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2020-03-25T20:49:20.371326Z, end-time: 2020-03-25T20:49:21.337002Z, duration: 0, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip DEPRECATION: Python 2.7 reached the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 is no longer maintained. A future version of pip will drop support for Python 2.7. More details about Python 2 support in pip, can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support Requirement already up-to-date: pip in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/envs/latest/lib/python2.7/site-packages (20.0.2) [rtd-command-info] start-time: 2020-03-25T20:49:21.501378Z, end-time: 2020-03-25T20:49:33.239874Z, duration: 11, exit-code: 0 python -m pip install --upgrade --no-cache-dir Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1 DEPRECATION: Python 2.7 reached the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 is no longer maintained. A future version of pip will drop support for Python 2.7. More details about Python 2 support in pip, can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support Collecting Pygments==2.3.1 Downloading Pygments-2.3.1-py2.py3-none-any.whl (849 kB) Collecting setuptools==41.0.1 Downloading setuptools-41.0.1-py2.py3-none-any.whl (575 kB) Collecting docutils==0.14 Downloading docutils-0.14-py2-none-any.whl (543 kB) Collecting mock==1.0.1 Downloading mock-1.0.1.tar.gz (818 kB) Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp27-cp27mu-manylinux1_x86_64.whl (2.0 MB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.5-py2.py3-none-any.whl (3.1 MB) Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) Collecting readthedocs-sphinx-ext<1.1 Downloading readthedocs_sphinx_ext-1.0.1-py2.py3-none-any.whl (14 kB) Collecting future Downloading future-0.18.2.tar.gz (829 kB) Collecting babel!=2.0,>=1.3 Downloading Babel-2.8.0-py2.py3-none-any.whl (8.6 MB) Collecting imagesize Downloading imagesize-1.2.0-py2.py3-none-any.whl (4.8 kB) Collecting typing; python_version < "3.5" Downloading typing-3.7.4.1-py2-none-any.whl (26 kB) Collecting Jinja2>=2.3 Downloading Jinja2-2.11.1-py2.py3-none-any.whl (126 kB) Collecting requests>=2.0.0 Downloading requests-2.23.0-py2.py3-none-any.whl (58 kB) Collecting packaging Downloading packaging-20.3-py2.py3-none-any.whl (37 kB) Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.0.0-py2.py3-none-any.whl (97 kB) Collecting six>=1.5 Downloading six-1.14.0-py2.py3-none-any.whl (10 kB) Collecting sphinxcontrib-websupport Downloading sphinxcontrib_websupport-1.1.2-py2.py3-none-any.whl (39 kB) Collecting pytz>=2015.7 Downloading pytz-2019.3-py2.py3-none-any.whl (509 kB) Collecting MarkupSafe>=0.23 Downloading MarkupSafe-1.1.1-cp27-cp27mu-manylinux1_x86_64.whl (24 kB) Collecting urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 Downloading urllib3-1.25.8-py2.py3-none-any.whl (125 kB) Collecting idna<3,>=2.5 Downloading idna-2.9-py2.py3-none-any.whl (58 kB) Collecting chardet<4,>=3.0.2 Downloading chardet-3.0.4-py2.py3-none-any.whl (133 kB) Collecting certifi>=2017.4.17 Downloading certifi-2019.11.28-py2.py3-none-any.whl (156 kB) Collecting pyparsing>=2.0.2 Downloading pyparsing-2.4.6-py2.py3-none-any.whl (67 kB) Building wheels for collected packages: mock, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py2-none-any.whl size=23755 sha256=29dbd4a313357b0f6873783d8de8b2dab39daada7fbd53ebe8771e74ae01320a Stored in directory: /tmp/pip-ephem-wheel-cache-Z9Wr8y/wheels/ad/62/e0/a06cc957652749e64c7904e899eca3ecb2ec47c60d52653660 Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py2-none-any.whl size=502566 sha256=163f6df17b42770e27d14a30371792f1890a4ccf702f3ff5a95df3f223506304 Stored in directory: /tmp/pip-ephem-wheel-cache-Z9Wr8y/wheels/5f/11/0c/aad680baf5ef4fbcbab992c9f03e1130357e0c173a4fdabfff Successfully built mock future Installing collected packages: Pygments, setuptools, docutils, mock, pillow, alabaster, future, commonmark, pytz, babel, imagesize, typing, MarkupSafe, Jinja2, urllib3, idna, chardet, certifi, requests, six, pyparsing, packaging, snowballstemmer, sphinxcontrib-websupport, sphinx, recommonmark, sphinx-rtd-theme, readthedocs-sphinx-ext Attempting uninstall: setuptools Found existing installation: setuptools 44.1.0 Uninstalling setuptools-44.1.0: Successfully uninstalled setuptools-44.1.0 Successfully installed Jinja2-2.11.1 MarkupSafe-1.1.1 Pygments-2.3.1 alabaster-0.7.12 babel-2.8.0 certifi-2019.11.28 chardet-3.0.4 commonmark-0.8.1 docutils-0.14 future-0.18.2 idna-2.9 imagesize-1.2.0 mock-1.0.1 packaging-20.3 pillow-5.4.1 pyparsing-2.4.6 pytz-2019.3 readthedocs-sphinx-ext-1.0.1 recommonmark-0.5.0 requests-2.23.0 setuptools-41.0.1 six-1.14.0 snowballstemmer-2.0.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-websupport-1.1.2 typing-3.7.4.1 urllib3-1.25.8 [rtd-command-info] start-time: 2020-03-25T20:49:33.497844Z, end-time: 2020-03-25T20:49:42.942182Z, duration: 9, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r docs/requirements.txt DEPRECATION: Python 2.7 reached the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 is no longer maintained. A future version of pip will drop support for Python 2.7. More details about Python 2 support in pip, can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support Ignoring networkx: markers 'python_version >= "3.5"' don't match your environment Collecting networkx==2.2 Downloading networkx-2.2.zip (1.7 MB) Collecting decorator==4.3.0 Downloading decorator-4.3.0-py2.py3-none-any.whl (9.2 kB) Collecting dimod==0.8.0 Downloading dimod-0.8.0-cp27-cp27mu-manylinux1_x86_64.whl (779 kB) Requirement already satisfied: sphinx in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/envs/latest/lib/python2.7/site-packages (from -r docs/requirements.txt (line 3)) (1.8.5) Requirement already satisfied: sphinx_rtd_theme in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/envs/latest/lib/python2.7/site-packages (from -r docs/requirements.txt (line 4)) (0.4.3) Requirement already satisfied: recommonmark in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/envs/latest/lib/python2.7/site-packages (from -r docs/requirements.txt (line 5)) (0.5.0) Requirement already satisfied: six<2.0.0,>=1.10.0 in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/envs/latest/lib/python2.7/site-packages (from dimod==0.8.0->-r docs/../requirements.txt (line 4)) (1.14.0) Collecting numpy<2.0.0,>=1.14.0 Downloading numpy-1.16.6-cp27-cp27mu-manylinux1_x86_64.whl (17.0 MB) Collecting futures; python_version == "2.7" Downloading futures-3.3.0-py2-none-any.whl (16 kB) Collecting jsonschema<3.0.0,>=2.6.0 Downloading jsonschema-2.6.0-py2.py3-none-any.whl (39 kB) Collecting enum34<2.0.0,>=1.1.6; python_version <= "3.3" Downloading enum34-1.1.10-py2-none-any.whl (11 kB) Requirement already satisfied: babel!=2.0,>=1.3 in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/envs/latest/lib/python2.7/site-packages (from sphinx->-r docs/requirements.txt (line 3)) (2.8.0) Requirement already satisfied: imagesize in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/envs/latest/lib/python2.7/site-packages (from sphinx->-r docs/requirements.txt (line 3)) (1.2.0) Requirement already satisfied: typing; python_version < "3.5" in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/envs/latest/lib/python2.7/site-packages (from sphinx->-r docs/requirements.txt (line 3)) (3.7.4.1) Requirement already satisfied: docutils>=0.11 in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/envs/latest/lib/python2.7/site-packages (from sphinx->-r docs/requirements.txt (line 3)) (0.14) Requirement already satisfied: Jinja2>=2.3 in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/envs/latest/lib/python2.7/site-packages (from sphinx->-r docs/requirements.txt (line 3)) (2.11.1) Requirement already satisfied: requests>=2.0.0 in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/envs/latest/lib/python2.7/site-packages (from sphinx->-r docs/requirements.txt (line 3)) (2.23.0) Requirement already satisfied: packaging in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/envs/latest/lib/python2.7/site-packages (from sphinx->-r docs/requirements.txt (line 3)) (20.3) Requirement already satisfied: Pygments>=2.0 in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/envs/latest/lib/python2.7/site-packages (from sphinx->-r docs/requirements.txt (line 3)) (2.3.1) Requirement already satisfied: alabaster<0.8,>=0.7 in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/envs/latest/lib/python2.7/site-packages (from sphinx->-r docs/requirements.txt (line 3)) (0.7.12) Requirement already satisfied: snowballstemmer>=1.1 in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/envs/latest/lib/python2.7/site-packages (from sphinx->-r docs/requirements.txt (line 3)) (2.0.0) Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/envs/latest/lib/python2.7/site-packages (from sphinx->-r docs/requirements.txt (line 3)) (41.0.1) Requirement already satisfied: sphinxcontrib-websupport in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/envs/latest/lib/python2.7/site-packages (from sphinx->-r docs/requirements.txt (line 3)) (1.1.2) Requirement already satisfied: commonmark>=0.7.3 in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/envs/latest/lib/python2.7/site-packages (from recommonmark->-r docs/requirements.txt (line 5)) (0.8.1) Collecting functools32; python_version == "2.7" Downloading functools32-3.2.3-2.tar.gz (31 kB) Requirement already satisfied: pytz>=2015.7 in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/envs/latest/lib/python2.7/site-packages (from babel!=2.0,>=1.3->sphinx->-r docs/requirements.txt (line 3)) (2019.3) Requirement already satisfied: MarkupSafe>=0.23 in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/envs/latest/lib/python2.7/site-packages (from Jinja2>=2.3->sphinx->-r docs/requirements.txt (line 3)) (1.1.1) Requirement already satisfied: urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/envs/latest/lib/python2.7/site-packages (from requests>=2.0.0->sphinx->-r docs/requirements.txt (line 3)) (1.25.8) Requirement already satisfied: certifi>=2017.4.17 in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/envs/latest/lib/python2.7/site-packages (from requests>=2.0.0->sphinx->-r docs/requirements.txt (line 3)) (2019.11.28) Requirement already satisfied: idna<3,>=2.5 in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/envs/latest/lib/python2.7/site-packages (from requests>=2.0.0->sphinx->-r docs/requirements.txt (line 3)) (2.9) Requirement already satisfied: chardet<4,>=3.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/envs/latest/lib/python2.7/site-packages (from requests>=2.0.0->sphinx->-r docs/requirements.txt (line 3)) (3.0.4) Requirement already satisfied: pyparsing>=2.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/envs/latest/lib/python2.7/site-packages (from packaging->sphinx->-r docs/requirements.txt (line 3)) (2.4.6) Requirement already satisfied: future in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/envs/latest/lib/python2.7/site-packages (from commonmark>=0.7.3->recommonmark->-r docs/requirements.txt (line 5)) (0.18.2) Building wheels for collected packages: networkx, functools32 Building wheel for networkx (setup.py): started Building wheel for networkx (setup.py): finished with status 'done' Created wheel for networkx: filename=networkx-2.2-py2.py3-none-any.whl size=1527321 sha256=fbd409d80594e85804b70138da8b79bfebcb54367a124820c5ef728ace9e0ef6 Stored in directory: /tmp/pip-ephem-wheel-cache-657Im8/wheels/df/80/48/106e63760ff0dcd3658613d93c1ecf64301b9261172f2c1acf Building wheel for functools32 (setup.py): started Building wheel for functools32 (setup.py): finished with status 'done' Created wheel for functools32: filename=functools32-3.2.3.post2-py2-none-any.whl size=14556 sha256=5ba5594b02db3181c9745195e0d0bf375e7d46117bd63dc6b5f5742c36e6b49a Stored in directory: /tmp/pip-ephem-wheel-cache-657Im8/wheels/c2/ea/a3/25af52265fad6418a74df0b8d9ca8b89e0b3735dbd4d0d3794 Successfully built networkx functools32 Installing collected packages: decorator, networkx, numpy, futures, functools32, jsonschema, enum34, dimod Successfully installed decorator-4.3.0 dimod-0.8.0 enum34-1.1.10 functools32-3.2.3.post2 futures-3.3.0 jsonschema-2.6.0 networkx-2.2 numpy-1.16.6 [rtd-command-info] start-time: 2020-03-25T20:49:44.672658Z, end-time: 2020-03-25T20:49:44.998068Z, duration: 0, exit-code: 0 cat docs/conf.py # -*- coding: utf-8 -*- # # DWaveNetworkX documentation build configuration file, created by # sphinx-quickstart on Wed Jul 26 10:55:26 2017. # # This file is execfile()d with the current directory set to its # containing dir. # # Note that not all possible configuration values are present in this # autogenerated file. # # All configuration values have a default; values that are commented out # serve to show the default. # If extensions (or modules to document with autodoc) are in another directory, # add these directories to sys.path here. If the directory is relative to the # documentation root, use os.path.abspath to make it absolute, like shown here. # import os import sys sys.path.insert(0, os.path.abspath('.')) sys.path.insert(0, os.path.dirname(os.path.dirname(os.path.abspath(__file__)))) # -- General configuration ------------------------------------------------ # import sphinx # if sphinx.__version__ # can check here # Add any Sphinx extension module names here, as strings. They can be # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom # ones. extensions = [ 'sphinx.ext.autosummary', 'sphinx.ext.autodoc', 'sphinx.ext.coverage', 'sphinx.ext.doctest', 'sphinx.ext.intersphinx', 'sphinx.ext.mathjax', 'sphinx.ext.napoleon', 'sphinx.ext.todo', 'sphinx.ext.viewcode', 'sphinx.ext.ifconfig', ] autosummary_generate = True # templates_path = ['_templates'] # The suffix(es) of source filenames. # You can specify multiple suffix as a list of string: # source_suffix = ['.rst'] # The master toctree document. master_doc = 'index' # General information about the project. project = u'D-Wave NetworkX' copyright = u'2017, D-Wave Systems Inc' author = u'D-Wave Systems Inc' # The version info for the project you're documenting, acts as replacement for # |version| and |release|, also used in various other places throughout the # built documents. # import dwave_networkx # The short X.Y version. version = dwave_networkx.__version__ # The full version, including alpha/beta/rc tags. release = dwave_networkx.__version__ # The language for content autogenerated by Sphinx. Refer to documentation # for a list of supported languages. # # This is also used if you do content translation via gettext catalogs. # Usually you set "language" from the command line for these cases. language = None add_module_names = False # List of patterns, relative to source directory, that match files and # directories to ignore when looking for source files. # This patterns also effect to html_static_path and html_extra_path exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store', 'sdk_index.rst'] # The name of the Pygments (syntax highlighting) style to use. pygments_style = 'sphinx' # If true, `todo` and `todoList` produce output, else they produce nothing. todo_include_todos = True modindex_common_prefix = ['dwave_networkx.'] doctest_global_setup = \ """ import dwave_networkx as dnx import networkx as nx """ # -- Options for HTML output ---------------------------------------------- # The theme to use for HTML and HTML Help pages. See the documentation for # a list of builtin themes. # import sphinx_rtd_theme html_theme = 'sphinx_rtd_theme' html_theme_path = [sphinx_rtd_theme.get_html_theme_path()] # Theme options are theme-specific and customize the look and feel of a theme # further. For a list of options available for each theme, see the # documentation. # # html_theme_options = {} # Add any paths that contain custom static files (such as style sheets) here, # relative to this directory. They are copied after the builtin static files, # so a file named "default.css" will overwrite the builtin "default.css". html_static_path = ['_static'] def setup(app): app.add_stylesheet('cookie_notice.css') app.add_javascript('cookie_notice.js') app.add_config_value('target', 'repo', 'env') # -- Options for HTMLHelp output ------------------------------------------ # Output file base name for HTML help builder. htmlhelp_basename = 'DWaveNetworkXdoc' # -- Options for LaTeX output --------------------------------------------- latex_elements = { # The paper size ('letterpaper' or 'a4paper'). # # 'papersize': 'letterpaper', # The font size ('10pt', '11pt' or '12pt'). # # 'pointsize': '10pt', # Additional stuff for the LaTeX preamble. # # 'preamble': '', # Latex figure (float) alignment # # 'figure_align': 'htbp', } # Grouping the document tree into LaTeX files. List of tuples # (source start file, target name, title, # author, documentclass [howto, manual, or own class]). latex_documents = [ (master_doc, 'DWaveNetworkX.tex', u'DWaveNetworkX Documentation', u'D-Wave Systems Inc', 'manual'), ] # -- Options for manual page output --------------------------------------- # One entry per manual page. List of tuples # (source start file, name, description, authors, manual section). man_pages = [ (master_doc, 'dwavenetworkx', u'DWaveNetworkX Documentation', [author], 1) ] # -- Options for Texinfo output ------------------------------------------- # Grouping the document tree into Texinfo files. List of tuples # (source start file, target name, title, author, # dir menu entry, description, category) texinfo_documents = [ (master_doc, 'DWaveNetworkX', u'DWaveNetworkX Documentation', author, 'DWaveNetworkX', 'One line description of project.', 'Miscellaneous'), ] # -- Options for Epub output ---------------------------------------------- # Bibliographic Dublin Core info. epub_title = project epub_author = author epub_publisher = author epub_copyright = copyright # The unique identifier of the text. This can be a ISBN number # or the project homepage. # # epub_identifier = '' # A unique identification for the text. # # epub_uid = '' # A list of files that should not be packed into the epub file. epub_exclude_files = ['search.html'] # Example configuration for intersphinx: refer to the Python standard library. intersphinx_mapping = {'python': ('https://docs.python.org/3', None), 'networkx': ('https://networkx.github.io/documentation/stable/', None), 'qbsolv': ('https://docs.ocean.dwavesys.com/projects/qbsolv/en/latest/', None), 'oceandocs': ('https://docs.ocean.dwavesys.com/en/latest/', None), 'sysdocs_gettingstarted': ('https://docs.dwavesys.com/docs/latest/', None)} ########################################################################### # auto-created readthedocs.org specific configuration # ########################################################################### # # The following code was added during an automated build on readthedocs.org # It is auto created and injected for every build. The result is based on the # conf.py.tmpl file found in the readthedocs.org codebase: # https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl # import importlib import sys import os.path from six import string_types from sphinx import version_info # Get suffix for proper linking to GitHub # This is deprecated in Sphinx 1.3+, # as each page can have its own suffix if globals().get('source_suffix', False): if isinstance(source_suffix, string_types): SUFFIX = source_suffix elif isinstance(source_suffix, (list, tuple)): # Sphinx >= 1.3 supports list/tuple to define multiple suffixes SUFFIX = source_suffix[0] elif isinstance(source_suffix, dict): # Sphinx >= 1.8 supports a mapping dictionary for multiple suffixes SUFFIX = list(source_suffix.keys())[0] # make a ``list()`` for py2/py3 compatibility else: # default to .rst SUFFIX = '.rst' else: SUFFIX = '.rst' # Add RTD Static Path. Add to the end because it overwrites previous files. if not 'html_static_path' in globals(): html_static_path = [] if os.path.exists('_static'): html_static_path.append('_static') # Add RTD Theme only if they aren't overriding it already using_rtd_theme = ( ( 'html_theme' in globals() and html_theme in ['default'] and # Allow people to bail with a hack of having an html_style 'html_style' not in globals() ) or 'html_theme' not in globals() ) if using_rtd_theme: theme = importlib.import_module('sphinx_rtd_theme') html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} if 'html_theme_path' in globals(): html_theme_path.append(theme.get_html_theme_path()) else: html_theme_path = [theme.get_html_theme_path()] if globals().get('websupport2_base_url', False): websupport2_base_url = 'https://readthedocs.com/websupport' websupport2_static_url = 'https://assets.readthedocs.com/' #Add project information to the template context. context = { 'using_theme': using_rtd_theme, 'html_theme': html_theme, 'current_version': "latest", 'version_slug': "latest", 'MEDIA_URL': "https://media.readthedocs.com/media/", 'STATIC_URL': "https://assets.readthedocs.com/", 'PRODUCTION_DOMAIN': "readthedocs.com", 'versions': [ ("latest", "/en/latest/"), ], 'downloads': [ ("pdf", "//docs.ocean.dwavesys.com/_/downloads/dwave-networkx/en/latest/pdf/"), ("html", "//docs.ocean.dwavesys.com/_/downloads/dwave-networkx/en/latest/htmlzip/"), ("epub", "//docs.ocean.dwavesys.com/_/downloads/dwave-networkx/en/latest/epub/"), ], 'subprojects': [ ], 'slug': 'd-wave-systems-dwave-networkx', 'name': u'dwave_networkx', 'rtd_language': u'en', 'programming_language': u'words', 'canonical_url': 'https://docs.ocean.dwavesys.com/projects/dwave-networkx/en/latest/', 'analytics_code': '', 'single_version': False, 'conf_py_path': '/docs/', 'api_host': 'https://readthedocs.com', 'proxied_api_host': '/_', 'github_user': 'dwavesystems', 'github_repo': 'dwave_networkx', 'github_version': 'master', 'display_github': True, 'bitbucket_user': 'None', 'bitbucket_repo': 'None', 'bitbucket_version': 'master', 'display_bitbucket': False, 'gitlab_user': 'None', 'gitlab_repo': 'None', 'gitlab_version': 'master', 'display_gitlab': False, 'READTHEDOCS': True, 'using_theme': (html_theme == "default"), 'new_theme': (html_theme == "sphinx_rtd_theme"), 'source_suffix': SUFFIX, 'ad_free': False, 'user_analytics_code': '', 'global_analytics_code': 'UA-17997319-2', 'commit': '975d4720', } if 'html_context' in globals(): html_context.update(context) else: html_context = context # Add custom RTD extension if 'extensions' in globals(): # Insert at the beginning because it can interfere # with other extensions. # See https://github.com/rtfd/readthedocs.org/pull/4054 extensions.insert(0, "readthedocs_ext.readthedocs") else: extensions = ["readthedocs_ext.readthedocs"] # Add External version warning banner to the external version documentation if 'branch' == 'external': extensions.insert(1, "readthedocs_ext.external_version_warning") project_language = 'en' # User's Sphinx configurations language_user = globals().get('language', None) latex_engine_user = globals().get('latex_engine', None) latex_elements_user = globals().get('latex_elements', None) # Remove this once xindy gets installed in Docker image and XINDYOPS # env variable is supported # https://github.com/rtfd/readthedocs-docker-images/pull/98 latex_use_xindy = False chinese = any([ language_user in ('zh_CN', 'zh_TW'), project_language in ('zh_CN', 'zh_TW'), ]) japanese = any([ language_user == 'ja', project_language == 'ja', ]) if chinese: latex_engine = latex_engine_user or 'xelatex' latex_elements_rtd = { 'preamble': '\\usepackage[UTF8]{ctex}\n', } latex_elements = latex_elements_user or latex_elements_rtd elif japanese: latex_engine = latex_engine_user or 'platex' [rtd-command-info] start-time: 2020-03-25T20:49:45.322780Z, end-time: 2020-03-25T20:49:53.270134Z, duration: 7, exit-code: 0 python sphinx-build -T -E -b readthedocs -d _build/doctrees-readthedocs -D language=en . _build/html Running Sphinx v1.8.5 loading translations [en]... done making output directory... [autosummary] generating autosummary for: README.rst, bibliography.rst, index.rst, installation.rst, intro.rst, license.rst, reference/algorithms/canonicalization.rst, reference/algorithms/clique.rst, reference/algorithms/coloring.rst, reference/algorithms/cover.rst, ..., reference/algorithms/max_cut.rst, reference/algorithms/packing.rst, reference/algorithms/social.rst, reference/algorithms/tsp.rst, reference/default_sampler.rst, reference/drawing.rst, reference/generators.rst, reference/index.rst, reference/utilities.rst, reference/utilities/index.rst [autosummary] generating autosummary for: /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/reference/algorithms/generated/dwave_networkx.algorithms.coloring.is_vertex_coloring.rst, /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/reference/algorithms/generated/dwave_networkx.algorithms.coloring.min_vertex_color.rst, /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/reference/algorithms/generated/dwave_networkx.algorithms.coloring.min_vertex_color_qubo.rst, /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/reference/algorithms/generated/dwave_networkx.algorithms.coloring.vertex_color.rst, /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/reference/algorithms/generated/dwave_networkx.algorithms.coloring.vertex_color_qubo.rst, /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/reference/algorithms/generated/dwave_networkx.algorithms.cover.is_vertex_cover.rst, /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/reference/algorithms/generated/dwave_networkx.algorithms.cover.min_vertex_cover.rst, /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/reference/algorithms/generated/dwave_networkx.algorithms.cover.min_weighted_vertex_cover.rst, /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.chimera_elimination_order.rst, /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.elimination_order_width.rst, ..., /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/reference/generated/dwave_networkx.find_chimera_indices.rst, /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/reference/generated/dwave_networkx.markov_network.rst, /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/reference/generated/dwave_networkx.pegasus_coordinates.linear_to_nice.rst, /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/reference/generated/dwave_networkx.pegasus_coordinates.linear_to_pegasus.rst, /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/reference/generated/dwave_networkx.pegasus_coordinates.nice_to_linear.rst, /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/reference/generated/dwave_networkx.pegasus_coordinates.nice_to_pegasus.rst, /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/reference/generated/dwave_networkx.pegasus_coordinates.pegasus_to_linear.rst, /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/reference/generated/dwave_networkx.pegasus_coordinates.pegasus_to_nice.rst, /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/reference/generated/dwave_networkx.pegasus_graph.rst, /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/reference/generated/dwave_networkx.utils.decorators.binary_quadratic_model_sampler.rst loading intersphinx inventory from https://docs.python.org/3/objects.inv... loading intersphinx inventory from https://docs.ocean.dwavesys.com/en/latest/objects.inv... loading intersphinx inventory from https://docs.ocean.dwavesys.com/projects/qbsolv/en/latest/objects.inv... loading intersphinx inventory from https://docs.dwavesys.com/docs/latest/objects.inv... loading intersphinx inventory from https://networkx.github.io/documentation/stable/objects.inv... building [mo]: targets for 0 po files that are out of date building [readthedocs]: targets for 24 source files that are out of date updating environment: 79 added, 0 changed, 0 removed reading sources... [ 1%] README reading sources... [ 2%] bibliography reading sources... [ 3%] index reading sources... [ 5%] installation reading sources... [ 6%] intro reading sources... [ 7%] license reading sources... [ 8%] reference/algorithms/canonicalization reading sources... [ 10%] reference/algorithms/clique reading sources... [ 11%] reference/algorithms/coloring reading sources... [ 12%] reference/algorithms/cover reading sources... [ 13%] reference/algorithms/elimination_ordering reading sources... [ 15%] reference/algorithms/generated/dwave_networkx.algorithms.coloring.is_vertex_coloring reading sources... [ 16%] reference/algorithms/generated/dwave_networkx.algorithms.coloring.min_vertex_color reading sources... [ 17%] reference/algorithms/generated/dwave_networkx.algorithms.coloring.min_vertex_color_qubo reading sources... [ 18%] reference/algorithms/generated/dwave_networkx.algorithms.coloring.vertex_color reading sources... [ 20%] reference/algorithms/generated/dwave_networkx.algorithms.coloring.vertex_color_qubo reading sources... [ 21%] reference/algorithms/generated/dwave_networkx.algorithms.cover.is_vertex_cover reading sources... [ 22%] reference/algorithms/generated/dwave_networkx.algorithms.cover.min_vertex_cover reading sources... [ 24%] reference/algorithms/generated/dwave_networkx.algorithms.cover.min_weighted_vertex_cover reading sources... [ 25%] reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.chimera_elimination_order reading sources... [ 26%] reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.elimination_order_width reading sources... [ 27%] reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.is_almost_simplicial reading sources... [ 29%] reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.is_simplicial reading sources... [ 30%] reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.max_cardinality_heuristic reading sources... [ 31%] reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.min_fill_heuristic reading sources... [ 32%] reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.min_width_heuristic reading sources... [ 34%] reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.minor_min_width reading sources... [ 35%] reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.pegasus_elimination_order reading sources... [ 36%] reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.treewidth_branch_and_bound reading sources... [ 37%] reference/algorithms/generated/dwave_networkx.algorithms.independent_set.maximum_weighted_independent_set_qubo reading sources... [ 39%] reference/algorithms/generated/dwave_networkx.algorithms.markov.markov_network_bqm reading sources... [ 40%] reference/algorithms/generated/dwave_networkx.algorithms.markov.sample_markov_network reading sources... [ 41%] reference/algorithms/generated/dwave_networkx.algorithms.matching.is_matching reading sources... [ 43%] reference/algorithms/generated/dwave_networkx.algorithms.matching.is_maximal_matching reading sources... [ 44%] reference/algorithms/generated/dwave_networkx.algorithms.matching.min_maximal_matching reading sources... [ 45%] reference/algorithms/generated/dwave_networkx.algorithms.max_cut.maximum_cut reading sources... [ 46%] reference/algorithms/generated/dwave_networkx.algorithms.max_cut.weighted_maximum_cut reading sources... [ 48%] reference/algorithms/generated/dwave_networkx.algorithms.social.structural_imbalance reading sources... [ 49%] reference/algorithms/generated/dwave_networkx.algorithms.social.structural_imbalance_ising reading sources... [ 50%] reference/algorithms/generated/dwave_networkx.algorithms.tsp.traveling_salesperson reading sources... [ 51%] reference/algorithms/generated/dwave_networkx.algorithms.tsp.traveling_salesperson_qubo reading sources... [ 53%] reference/algorithms/generated/dwave_networkx.canonical_chimera_labeling reading sources... [ 54%] reference/algorithms/generated/dwave_networkx.clique_number reading sources... [ 55%] reference/algorithms/generated/dwave_networkx.is_clique reading sources... [ 56%] reference/algorithms/generated/dwave_networkx.is_independent_set reading sources... [ 58%] reference/algorithms/generated/dwave_networkx.maximum_clique reading sources... [ 59%] reference/algorithms/generated/dwave_networkx.maximum_independent_set reading sources... [ 60%] reference/algorithms/generated/dwave_networkx.maximum_weighted_independent_set reading sources... [ 62%] reference/algorithms/index reading sources... [ 63%] reference/algorithms/markov reading sources... [ 64%] reference/algorithms/matching reading sources... [ 65%] reference/algorithms/max_cut reading sources... [ 67%] reference/algorithms/packing reading sources... [ 68%] reference/algorithms/social reading sources... [ 69%] reference/algorithms/tsp reading sources... [ 70%] reference/default_sampler reading sources... [ 72%] reference/drawing reading sources... [ 73%] reference/generated/dwave_networkx.chimera_graph reading sources... [ 74%] reference/generated/dwave_networkx.default_sampler.get_default_sampler reading sources... [ 75%] reference/generated/dwave_networkx.default_sampler.set_default_sampler reading sources... [ 77%] reference/generated/dwave_networkx.default_sampler.unset_default_sampler reading sources... [ 78%] reference/generated/dwave_networkx.drawing.chimera_layout.chimera_layout reading sources... [ 79%] reference/generated/dwave_networkx.drawing.chimera_layout.draw_chimera reading sources... [ 81%] reference/generated/dwave_networkx.exceptions.DWaveNetworkXException reading sources... [ 82%] reference/generated/dwave_networkx.exceptions.DWaveNetworkXMissingSampler reading sources... [ 83%] reference/generated/dwave_networkx.find_chimera_indices reading sources... [ 84%] reference/generated/dwave_networkx.markov_network reading sources... [ 86%] reference/generated/dwave_networkx.pegasus_coordinates.linear_to_nice reading sources... [ 87%] reference/generated/dwave_networkx.pegasus_coordinates.linear_to_pegasus reading sources... [ 88%] reference/generated/dwave_networkx.pegasus_coordinates.nice_to_linear reading sources... [ 89%] reference/generated/dwave_networkx.pegasus_coordinates.nice_to_pegasus reading sources... [ 91%] reference/generated/dwave_networkx.pegasus_coordinates.pegasus_to_linear reading sources... [ 92%] reference/generated/dwave_networkx.pegasus_coordinates.pegasus_to_nice reading sources... [ 93%] reference/generated/dwave_networkx.pegasus_graph reading sources... [ 94%] reference/generated/dwave_networkx.utils.decorators.binary_quadratic_model_sampler reading sources... [ 96%] reference/generators reading sources... [ 97%] reference/index reading sources... [ 98%] reference/utilities reading sources... [100%] reference/utilities/index /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/reference/algorithms/elimination_ordering.rst:36: WARNING: duplicate citation GD, other instance in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/bibliography.rst /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/dwave_networkx/algorithms/coloring.py:docstring of dwave_networkx.algorithms.coloring.min_vertex_color:35: WARNING: duplicate citation DWMP, other instance in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/bibliography.rst /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/dwave_networkx/algorithms/coloring.py:docstring of dwave_networkx.algorithms.coloring.vertex_color:31: WARNING: duplicate citation DWMP, other instance in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/reference/algorithms/generated/dwave_networkx.algorithms.coloring.min_vertex_color.rst /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/dwave_networkx/algorithms/cover.py:docstring of dwave_networkx.algorithms.cover.min_vertex_cover:56: WARNING: duplicate citation AL, other instance in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/bibliography.rst /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/dwave_networkx/algorithms/elimination_ordering.py:docstring of dwave_networkx.algorithms.elimination_ordering.treewidth_branch_and_bound:30: WARNING: duplicate citation GD, other instance in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/reference/algorithms/elimination_ordering.rst /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/dwave_networkx/algorithms/matching.py:docstring of dwave_networkx.algorithms.matching.min_maximal_matching:49: WARNING: duplicate citation AL, other instance in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/reference/algorithms/generated/dwave_networkx.algorithms.cover.min_vertex_cover.rst /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/dwave_networkx/algorithms/social.py:docstring of dwave_networkx.algorithms.social.structural_imbalance:62: WARNING: duplicate citation FIA, other instance in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/bibliography.rst /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/dwave_networkx/algorithms/clique.py:docstring of dwave_networkx.maximum_clique:47: WARNING: duplicate citation AL, other instance in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/reference/algorithms/generated/dwave_networkx.algorithms.matching.min_maximal_matching.rst /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/dwave_networkx/algorithms/independent_set.py:docstring of dwave_networkx.maximum_independent_set:54: WARNING: duplicate citation AL, other instance in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/reference/algorithms/generated/dwave_networkx.maximum_clique.rst /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/dwave_networkx/algorithms/independent_set.py:docstring of dwave_networkx.maximum_weighted_independent_set:46: WARNING: duplicate citation AL, other instance in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/reference/algorithms/generated/dwave_networkx.maximum_independent_set.rst /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/reference/algorithms/packing.rst:14: WARNING: duplicate label cover, other instance in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/reference/algorithms/cover.rst looking for now-outdated files... none found pickling environment... done checking consistency... /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/bibliography.rst:4: WARNING: Citation [NX] is not referenced. /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/reference/algorithms/generated/dwave_networkx.algorithms.social.structural_imbalance.rst:62: WARNING: Citation [FIA] is not referenced. done preparing documents... done writing output... [ 1%] README writing output... [ 2%] bibliography writing output... [ 3%] index writing output... [ 5%] installation writing output... [ 6%] intro writing output... [ 7%] license writing output... [ 8%] reference/algorithms/canonicalization writing output... [ 10%] reference/algorithms/clique writing output... [ 11%] reference/algorithms/coloring writing output... [ 12%] reference/algorithms/cover writing output... [ 13%] reference/algorithms/elimination_ordering writing output... [ 15%] reference/algorithms/generated/dwave_networkx.algorithms.coloring.is_vertex_coloring writing output... [ 16%] reference/algorithms/generated/dwave_networkx.algorithms.coloring.min_vertex_color writing output... [ 17%] reference/algorithms/generated/dwave_networkx.algorithms.coloring.min_vertex_color_qubo writing output... [ 18%] reference/algorithms/generated/dwave_networkx.algorithms.coloring.vertex_color writing output... [ 20%] reference/algorithms/generated/dwave_networkx.algorithms.coloring.vertex_color_qubo writing output... [ 21%] reference/algorithms/generated/dwave_networkx.algorithms.cover.is_vertex_cover writing output... [ 22%] reference/algorithms/generated/dwave_networkx.algorithms.cover.min_vertex_cover writing output... [ 24%] reference/algorithms/generated/dwave_networkx.algorithms.cover.min_weighted_vertex_cover writing output... [ 25%] reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.chimera_elimination_order writing output... [ 26%] reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.elimination_order_width writing output... [ 27%] reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.is_almost_simplicial writing output... [ 29%] reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.is_simplicial writing output... [ 30%] reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.max_cardinality_heuristic writing output... [ 31%] reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.min_fill_heuristic writing output... [ 32%] reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.min_width_heuristic writing output... [ 34%] reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.minor_min_width writing output... [ 35%] reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.pegasus_elimination_order writing output... [ 36%] reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.treewidth_branch_and_bound writing output... [ 37%] reference/algorithms/generated/dwave_networkx.algorithms.independent_set.maximum_weighted_independent_set_qubo writing output... [ 39%] reference/algorithms/generated/dwave_networkx.algorithms.markov.markov_network_bqm writing output... [ 40%] reference/algorithms/generated/dwave_networkx.algorithms.markov.sample_markov_network writing output... [ 41%] reference/algorithms/generated/dwave_networkx.algorithms.matching.is_matching writing output... [ 43%] reference/algorithms/generated/dwave_networkx.algorithms.matching.is_maximal_matching writing output... [ 44%] reference/algorithms/generated/dwave_networkx.algorithms.matching.min_maximal_matching writing output... [ 45%] reference/algorithms/generated/dwave_networkx.algorithms.max_cut.maximum_cut writing output... [ 46%] reference/algorithms/generated/dwave_networkx.algorithms.max_cut.weighted_maximum_cut writing output... [ 48%] reference/algorithms/generated/dwave_networkx.algorithms.social.structural_imbalance writing output... [ 49%] reference/algorithms/generated/dwave_networkx.algorithms.social.structural_imbalance_ising writing output... [ 50%] reference/algorithms/generated/dwave_networkx.algorithms.tsp.traveling_salesperson writing output... [ 51%] reference/algorithms/generated/dwave_networkx.algorithms.tsp.traveling_salesperson_qubo writing output... [ 53%] reference/algorithms/generated/dwave_networkx.canonical_chimera_labeling writing output... [ 54%] reference/algorithms/generated/dwave_networkx.clique_number writing output... [ 55%] reference/algorithms/generated/dwave_networkx.is_clique writing output... [ 56%] reference/algorithms/generated/dwave_networkx.is_independent_set writing output... [ 58%] reference/algorithms/generated/dwave_networkx.maximum_clique writing output... [ 59%] reference/algorithms/generated/dwave_networkx.maximum_independent_set writing output... [ 60%] reference/algorithms/generated/dwave_networkx.maximum_weighted_independent_set writing output... [ 62%] reference/algorithms/index writing output... [ 63%] reference/algorithms/markov writing output... [ 64%] reference/algorithms/matching writing output... [ 65%] reference/algorithms/max_cut writing output... [ 67%] reference/algorithms/packing writing output... [ 68%] reference/algorithms/social writing output... [ 69%] reference/algorithms/tsp writing output... [ 70%] reference/default_sampler writing output... [ 72%] reference/drawing writing output... [ 73%] reference/generated/dwave_networkx.chimera_graph writing output... [ 74%] reference/generated/dwave_networkx.default_sampler.get_default_sampler writing output... [ 75%] reference/generated/dwave_networkx.default_sampler.set_default_sampler writing output... [ 77%] reference/generated/dwave_networkx.default_sampler.unset_default_sampler writing output... [ 78%] reference/generated/dwave_networkx.drawing.chimera_layout.chimera_layout writing output... [ 79%] reference/generated/dwave_networkx.drawing.chimera_layout.draw_chimera writing output... [ 81%] reference/generated/dwave_networkx.exceptions.DWaveNetworkXException writing output... [ 82%] reference/generated/dwave_networkx.exceptions.DWaveNetworkXMissingSampler writing output... [ 83%] reference/generated/dwave_networkx.find_chimera_indices writing output... [ 84%] reference/generated/dwave_networkx.markov_network writing output... [ 86%] reference/generated/dwave_networkx.pegasus_coordinates.linear_to_nice writing output... [ 87%] reference/generated/dwave_networkx.pegasus_coordinates.linear_to_pegasus writing output... [ 88%] reference/generated/dwave_networkx.pegasus_coordinates.nice_to_linear writing output... [ 89%] reference/generated/dwave_networkx.pegasus_coordinates.nice_to_pegasus writing output... [ 91%] reference/generated/dwave_networkx.pegasus_coordinates.pegasus_to_linear writing output... [ 92%] reference/generated/dwave_networkx.pegasus_coordinates.pegasus_to_nice writing output... [ 93%] reference/generated/dwave_networkx.pegasus_graph writing output... [ 94%] reference/generated/dwave_networkx.utils.decorators.binary_quadratic_model_sampler writing output... [ 96%] reference/generators writing output... [ 97%] reference/index writing output... [ 98%] reference/utilities writing output... [100%] reference/utilities/index generating indices... genindex py-modindex highlighting module code... [ 5%] dwave_networkx.algorithms.canonicalization highlighting module code... [ 11%] dwave_networkx.algorithms.clique highlighting module code... [ 16%] dwave_networkx.algorithms.coloring highlighting module code... [ 22%] dwave_networkx.algorithms.cover highlighting module code... [ 27%] dwave_networkx.algorithms.elimination_ordering highlighting module code... [ 33%] dwave_networkx.algorithms.independent_set highlighting module code... [ 38%] dwave_networkx.algorithms.markov highlighting module code... [ 44%] dwave_networkx.algorithms.matching highlighting module code... [ 50%] dwave_networkx.algorithms.max_cut highlighting module code... [ 55%] dwave_networkx.algorithms.social highlighting module code... [ 61%] dwave_networkx.algorithms.tsp highlighting module code... [ 66%] dwave_networkx.default_sampler highlighting module code... [ 72%] dwave_networkx.drawing.chimera_layout highlighting module code... [ 77%] dwave_networkx.exceptions highlighting module code... [ 83%] dwave_networkx.generators.chimera highlighting module code... [ 88%] dwave_networkx.generators.markov highlighting module code... [ 94%] dwave_networkx.generators.pegasus highlighting module code... [100%] dwave_networkx.utils.decorators writing additional pages... search copying images... [ 11%] reference/algorithms/../../_images/Social.png copying images... [ 22%] reference/../_images/chimera_layout_0-rightside.png copying images... [ 33%] reference/algorithms/../../_images/MaxCut.png copying images... [ 44%] reference/algorithms/../../_images/clique.png copying images... [ 55%] reference/algorithms/../../_images/Cover.png copying images... [ 66%] reference/algorithms/../../_images/tsp.png copying images... [ 77%] reference/algorithms/../../_images/Problem_MapColoring.png copying images... [ 88%] reference/algorithms/../../_images/Match.png copying images... [100%] reference/../_images/find_chimera-unitcell.png copying static files... done copying readthedocs static files... done copying searchtools... done copying extra files... done dumping search index in English (code: en) ... done dumping object inventory... done build succeeded, 13 warnings. The HTML pages are in _build/html. [rtd-command-info] start-time: 2020-03-25T20:49:53.503115Z, end-time: 2020-03-25T20:49:59.698488Z, duration: 6, exit-code: 0 python sphinx-build -T -b readthedocssinglehtmllocalmedia -d _build/doctrees-readthedocssinglehtmllocalmedia -D language=en . _build/localmedia Running Sphinx v1.8.5 loading translations [en]... done making output directory... [autosummary] generating autosummary for: README.rst, bibliography.rst, index.rst, installation.rst, intro.rst, license.rst, reference/algorithms/canonicalization.rst, reference/algorithms/clique.rst, reference/algorithms/coloring.rst, reference/algorithms/cover.rst, ..., reference/generated/dwave_networkx.pegasus_coordinates.nice_to_linear.rst, reference/generated/dwave_networkx.pegasus_coordinates.nice_to_pegasus.rst, reference/generated/dwave_networkx.pegasus_coordinates.pegasus_to_linear.rst, reference/generated/dwave_networkx.pegasus_coordinates.pegasus_to_nice.rst, reference/generated/dwave_networkx.pegasus_graph.rst, reference/generated/dwave_networkx.utils.decorators.binary_quadratic_model_sampler.rst, reference/generators.rst, reference/index.rst, reference/utilities.rst, reference/utilities/index.rst loading intersphinx inventory from https://docs.python.org/3/objects.inv... loading intersphinx inventory from https://docs.ocean.dwavesys.com/en/latest/objects.inv... loading intersphinx inventory from https://docs.ocean.dwavesys.com/projects/qbsolv/en/latest/objects.inv... loading intersphinx inventory from https://docs.dwavesys.com/docs/latest/objects.inv... loading intersphinx inventory from https://networkx.github.io/documentation/stable/objects.inv... building [mo]: targets for 0 po files that are out of date building [readthedocssinglehtmllocalmedia]: all documents updating environment: 79 added, 0 changed, 0 removed reading sources... [ 1%] README reading sources... [ 2%] bibliography reading sources... [ 3%] index reading sources... [ 5%] installation reading sources... [ 6%] intro reading sources... [ 7%] license reading sources... [ 8%] reference/algorithms/canonicalization reading sources... [ 10%] reference/algorithms/clique reading sources... [ 11%] reference/algorithms/coloring reading sources... [ 12%] reference/algorithms/cover reading sources... [ 13%] reference/algorithms/elimination_ordering reading sources... [ 15%] reference/algorithms/generated/dwave_networkx.algorithms.coloring.is_vertex_coloring reading sources... [ 16%] reference/algorithms/generated/dwave_networkx.algorithms.coloring.min_vertex_color reading sources... [ 17%] reference/algorithms/generated/dwave_networkx.algorithms.coloring.min_vertex_color_qubo reading sources... [ 18%] reference/algorithms/generated/dwave_networkx.algorithms.coloring.vertex_color reading sources... [ 20%] reference/algorithms/generated/dwave_networkx.algorithms.coloring.vertex_color_qubo reading sources... [ 21%] reference/algorithms/generated/dwave_networkx.algorithms.cover.is_vertex_cover reading sources... [ 22%] reference/algorithms/generated/dwave_networkx.algorithms.cover.min_vertex_cover reading sources... [ 24%] reference/algorithms/generated/dwave_networkx.algorithms.cover.min_weighted_vertex_cover reading sources... [ 25%] reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.chimera_elimination_order reading sources... [ 26%] reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.elimination_order_width reading sources... [ 27%] reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.is_almost_simplicial reading sources... [ 29%] reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.is_simplicial reading sources... [ 30%] reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.max_cardinality_heuristic reading sources... [ 31%] reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.min_fill_heuristic reading sources... [ 32%] reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.min_width_heuristic reading sources... [ 34%] reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.minor_min_width reading sources... [ 35%] reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.pegasus_elimination_order reading sources... [ 36%] reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.treewidth_branch_and_bound reading sources... [ 37%] reference/algorithms/generated/dwave_networkx.algorithms.independent_set.maximum_weighted_independent_set_qubo reading sources... [ 39%] reference/algorithms/generated/dwave_networkx.algorithms.markov.markov_network_bqm reading sources... [ 40%] reference/algorithms/generated/dwave_networkx.algorithms.markov.sample_markov_network reading sources... [ 41%] reference/algorithms/generated/dwave_networkx.algorithms.matching.is_matching reading sources... [ 43%] reference/algorithms/generated/dwave_networkx.algorithms.matching.is_maximal_matching reading sources... [ 44%] reference/algorithms/generated/dwave_networkx.algorithms.matching.min_maximal_matching reading sources... [ 45%] reference/algorithms/generated/dwave_networkx.algorithms.max_cut.maximum_cut reading sources... [ 46%] reference/algorithms/generated/dwave_networkx.algorithms.max_cut.weighted_maximum_cut reading sources... [ 48%] reference/algorithms/generated/dwave_networkx.algorithms.social.structural_imbalance reading sources... [ 49%] reference/algorithms/generated/dwave_networkx.algorithms.social.structural_imbalance_ising reading sources... [ 50%] reference/algorithms/generated/dwave_networkx.algorithms.tsp.traveling_salesperson reading sources... [ 51%] reference/algorithms/generated/dwave_networkx.algorithms.tsp.traveling_salesperson_qubo reading sources... [ 53%] reference/algorithms/generated/dwave_networkx.canonical_chimera_labeling reading sources... [ 54%] reference/algorithms/generated/dwave_networkx.clique_number reading sources... [ 55%] reference/algorithms/generated/dwave_networkx.is_clique reading sources... [ 56%] reference/algorithms/generated/dwave_networkx.is_independent_set reading sources... [ 58%] reference/algorithms/generated/dwave_networkx.maximum_clique reading sources... [ 59%] reference/algorithms/generated/dwave_networkx.maximum_independent_set reading sources... [ 60%] reference/algorithms/generated/dwave_networkx.maximum_weighted_independent_set reading sources... [ 62%] reference/algorithms/index reading sources... [ 63%] reference/algorithms/markov reading sources... [ 64%] reference/algorithms/matching reading sources... [ 65%] reference/algorithms/max_cut reading sources... [ 67%] reference/algorithms/packing reading sources... [ 68%] reference/algorithms/social reading sources... [ 69%] reference/algorithms/tsp reading sources... [ 70%] reference/default_sampler reading sources... [ 72%] reference/drawing reading sources... [ 73%] reference/generated/dwave_networkx.chimera_graph reading sources... [ 74%] reference/generated/dwave_networkx.default_sampler.get_default_sampler reading sources... [ 75%] reference/generated/dwave_networkx.default_sampler.set_default_sampler reading sources... [ 77%] reference/generated/dwave_networkx.default_sampler.unset_default_sampler reading sources... [ 78%] reference/generated/dwave_networkx.drawing.chimera_layout.chimera_layout reading sources... [ 79%] reference/generated/dwave_networkx.drawing.chimera_layout.draw_chimera reading sources... [ 81%] reference/generated/dwave_networkx.exceptions.DWaveNetworkXException reading sources... [ 82%] reference/generated/dwave_networkx.exceptions.DWaveNetworkXMissingSampler reading sources... [ 83%] reference/generated/dwave_networkx.find_chimera_indices reading sources... [ 84%] reference/generated/dwave_networkx.markov_network reading sources... [ 86%] reference/generated/dwave_networkx.pegasus_coordinates.linear_to_nice reading sources... [ 87%] reference/generated/dwave_networkx.pegasus_coordinates.linear_to_pegasus reading sources... [ 88%] reference/generated/dwave_networkx.pegasus_coordinates.nice_to_linear reading sources... [ 89%] reference/generated/dwave_networkx.pegasus_coordinates.nice_to_pegasus reading sources... [ 91%] reference/generated/dwave_networkx.pegasus_coordinates.pegasus_to_linear reading sources... [ 92%] reference/generated/dwave_networkx.pegasus_coordinates.pegasus_to_nice reading sources... [ 93%] reference/generated/dwave_networkx.pegasus_graph reading sources... [ 94%] reference/generated/dwave_networkx.utils.decorators.binary_quadratic_model_sampler reading sources... [ 96%] reference/generators reading sources... [ 97%] reference/index reading sources... [ 98%] reference/utilities reading sources... [100%] reference/utilities/index /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/reference/algorithms/elimination_ordering.rst:36: WARNING: duplicate citation GD, other instance in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/bibliography.rst /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/dwave_networkx/algorithms/coloring.py:docstring of dwave_networkx.algorithms.coloring.min_vertex_color:35: WARNING: duplicate citation DWMP, other instance in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/bibliography.rst /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/dwave_networkx/algorithms/coloring.py:docstring of dwave_networkx.algorithms.coloring.vertex_color:31: WARNING: duplicate citation DWMP, other instance in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/reference/algorithms/generated/dwave_networkx.algorithms.coloring.min_vertex_color.rst /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/dwave_networkx/algorithms/cover.py:docstring of dwave_networkx.algorithms.cover.min_vertex_cover:56: WARNING: duplicate citation AL, other instance in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/bibliography.rst /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/dwave_networkx/algorithms/elimination_ordering.py:docstring of dwave_networkx.algorithms.elimination_ordering.treewidth_branch_and_bound:30: WARNING: duplicate citation GD, other instance in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/reference/algorithms/elimination_ordering.rst /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/dwave_networkx/algorithms/matching.py:docstring of dwave_networkx.algorithms.matching.min_maximal_matching:49: WARNING: duplicate citation AL, other instance in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/reference/algorithms/generated/dwave_networkx.algorithms.cover.min_vertex_cover.rst /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/dwave_networkx/algorithms/social.py:docstring of dwave_networkx.algorithms.social.structural_imbalance:62: WARNING: duplicate citation FIA, other instance in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/bibliography.rst /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/dwave_networkx/algorithms/clique.py:docstring of dwave_networkx.maximum_clique:47: WARNING: duplicate citation AL, other instance in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/reference/algorithms/generated/dwave_networkx.algorithms.matching.min_maximal_matching.rst /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/dwave_networkx/algorithms/independent_set.py:docstring of dwave_networkx.maximum_independent_set:54: WARNING: duplicate citation AL, other instance in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/reference/algorithms/generated/dwave_networkx.maximum_clique.rst /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/dwave_networkx/algorithms/independent_set.py:docstring of dwave_networkx.maximum_weighted_independent_set:46: WARNING: duplicate citation AL, other instance in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/reference/algorithms/generated/dwave_networkx.maximum_independent_set.rst /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/reference/algorithms/packing.rst:14: WARNING: duplicate label cover, other instance in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/reference/algorithms/cover.rst looking for now-outdated files... none found pickling environment... done checking consistency... /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/bibliography.rst:4: WARNING: Citation [NX] is not referenced. /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/reference/algorithms/generated/dwave_networkx.algorithms.social.structural_imbalance.rst:62: WARNING: Citation [FIA] is not referenced. done preparing documents... done assembling single document... intro reference/index reference/algorithms/index reference/algorithms/canonicalization reference/algorithms/generated/dwave_networkx.canonical_chimera_labeling reference/algorithms/clique reference/algorithms/generated/dwave_networkx.maximum_clique reference/algorithms/generated/dwave_networkx.clique_number reference/algorithms/generated/dwave_networkx.is_clique reference/algorithms/coloring reference/algorithms/generated/dwave_networkx.algorithms.coloring.is_vertex_coloring reference/algorithms/generated/dwave_networkx.algorithms.coloring.min_vertex_color reference/algorithms/generated/dwave_networkx.algorithms.coloring.min_vertex_color_qubo reference/algorithms/generated/dwave_networkx.algorithms.coloring.vertex_color reference/algorithms/generated/dwave_networkx.algorithms.coloring.vertex_color_qubo reference/algorithms/cover reference/algorithms/generated/dwave_networkx.algorithms.cover.min_weighted_vertex_cover reference/algorithms/generated/dwave_networkx.algorithms.cover.min_vertex_cover reference/algorithms/generated/dwave_networkx.algorithms.cover.is_vertex_cover reference/algorithms/elimination_ordering reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.chimera_elimination_order reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.elimination_order_width reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.is_almost_simplicial reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.is_simplicial reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.max_cardinality_heuristic reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.minor_min_width reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.min_fill_heuristic reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.min_width_heuristic reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.pegasus_elimination_order reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.treewidth_branch_and_bound reference/algorithms/markov reference/algorithms/generated/dwave_networkx.algorithms.markov.sample_markov_network reference/algorithms/generated/dwave_networkx.algorithms.markov.markov_network_bqm reference/algorithms/matching reference/algorithms/generated/dwave_networkx.algorithms.matching.min_maximal_matching reference/algorithms/generated/dwave_networkx.algorithms.matching.is_matching reference/algorithms/generated/dwave_networkx.algorithms.matching.is_maximal_matching reference/algorithms/max_cut reference/algorithms/generated/dwave_networkx.algorithms.max_cut.maximum_cut reference/algorithms/generated/dwave_networkx.algorithms.max_cut.weighted_maximum_cut reference/algorithms/packing reference/algorithms/generated/dwave_networkx.maximum_weighted_independent_set reference/algorithms/generated/dwave_networkx.maximum_independent_set reference/algorithms/generated/dwave_networkx.is_independent_set reference/algorithms/generated/dwave_networkx.algorithms.independent_set.maximum_weighted_independent_set_qubo reference/algorithms/social reference/algorithms/generated/dwave_networkx.algorithms.social.structural_imbalance reference/algorithms/generated/dwave_networkx.algorithms.social.structural_imbalance_ising reference/algorithms/tsp reference/algorithms/generated/dwave_networkx.algorithms.tsp.traveling_salesperson reference/algorithms/generated/dwave_networkx.algorithms.tsp.traveling_salesperson_qubo reference/drawing reference/generated/dwave_networkx.drawing.chimera_layout.chimera_layout reference/generated/dwave_networkx.drawing.chimera_layout.draw_chimera reference/generators reference/generated/dwave_networkx.chimera_graph reference/generated/dwave_networkx.pegasus_graph reference/generated/dwave_networkx.markov_network reference/utilities reference/generated/dwave_networkx.utils.decorators.binary_quadratic_model_sampler reference/utilities/index reference/generated/dwave_networkx.find_chimera_indices reference/generated/dwave_networkx.pegasus_coordinates.linear_to_nice reference/generated/dwave_networkx.pegasus_coordinates.linear_to_pegasus reference/generated/dwave_networkx.pegasus_coordinates.nice_to_linear reference/generated/dwave_networkx.pegasus_coordinates.nice_to_pegasus reference/generated/dwave_networkx.pegasus_coordinates.pegasus_to_linear reference/generated/dwave_networkx.pegasus_coordinates.pegasus_to_nice reference/generated/dwave_networkx.exceptions.DWaveNetworkXException reference/generated/dwave_networkx.exceptions.DWaveNetworkXMissingSampler reference/default_sampler reference/generated/dwave_networkx.default_sampler.set_default_sampler reference/generated/dwave_networkx.default_sampler.unset_default_sampler reference/generated/dwave_networkx.default_sampler.get_default_sampler bibliography installation license writing... done writing additional files... copying images... [ 11%] reference/algorithms/../../_images/Social.png copying images... [ 22%] reference/../_images/chimera_layout_0-rightside.png copying images... [ 33%] reference/algorithms/../../_images/MaxCut.png copying images... [ 44%] reference/algorithms/../../_images/clique.png copying images... [ 55%] reference/algorithms/../../_images/Cover.png copying images... [ 66%] reference/algorithms/../../_images/tsp.png copying images... [ 77%] reference/algorithms/../../_images/Problem_MapColoring.png copying images... [ 88%] reference/algorithms/../../_images/Match.png copying images... [100%] reference/../_images/find_chimera-unitcell.png copying static files... done copying readthedocs static files... done copying extra files... done dumping object inventory... done build succeeded, 13 warnings. The HTML page is in _build/localmedia. [rtd-command-info] start-time: 2020-03-25T20:49:59.910026Z, end-time: 2020-03-25T20:50:05.595029Z, duration: 5, exit-code: 0 python sphinx-build -b latex -D language=en -d _build/doctrees . _build/latex Running Sphinx v1.8.5 loading translations [en]... done making output directory... [autosummary] generating autosummary for: README.rst, bibliography.rst, index.rst, installation.rst, intro.rst, license.rst, reference/algorithms/canonicalization.rst, reference/algorithms/clique.rst, reference/algorithms/coloring.rst, reference/algorithms/cover.rst, ..., reference/generated/dwave_networkx.pegasus_coordinates.nice_to_linear.rst, reference/generated/dwave_networkx.pegasus_coordinates.nice_to_pegasus.rst, reference/generated/dwave_networkx.pegasus_coordinates.pegasus_to_linear.rst, reference/generated/dwave_networkx.pegasus_coordinates.pegasus_to_nice.rst, reference/generated/dwave_networkx.pegasus_graph.rst, reference/generated/dwave_networkx.utils.decorators.binary_quadratic_model_sampler.rst, reference/generators.rst, reference/index.rst, reference/utilities.rst, reference/utilities/index.rst loading intersphinx inventory from https://docs.python.org/3/objects.inv... loading intersphinx inventory from https://docs.ocean.dwavesys.com/en/latest/objects.inv... loading intersphinx inventory from https://docs.ocean.dwavesys.com/projects/qbsolv/en/latest/objects.inv... loading intersphinx inventory from https://docs.dwavesys.com/docs/latest/objects.inv... loading intersphinx inventory from https://networkx.github.io/documentation/stable/objects.inv... building [mo]: targets for 0 po files that are out of date building [latex]: all documents updating environment: 79 added, 0 changed, 0 removed reading sources... [ 1%] README reading sources... [ 2%] bibliography reading sources... [ 3%] index reading sources... [ 5%] installation reading sources... [ 6%] intro reading sources... [ 7%] license reading sources... [ 8%] reference/algorithms/canonicalization reading sources... [ 10%] reference/algorithms/clique reading sources... [ 11%] reference/algorithms/coloring reading sources... [ 12%] reference/algorithms/cover reading sources... [ 13%] reference/algorithms/elimination_ordering reading sources... [ 15%] reference/algorithms/generated/dwave_networkx.algorithms.coloring.is_vertex_coloring reading sources... [ 16%] reference/algorithms/generated/dwave_networkx.algorithms.coloring.min_vertex_color reading sources... [ 17%] reference/algorithms/generated/dwave_networkx.algorithms.coloring.min_vertex_color_qubo reading sources... [ 18%] reference/algorithms/generated/dwave_networkx.algorithms.coloring.vertex_color reading sources... [ 20%] reference/algorithms/generated/dwave_networkx.algorithms.coloring.vertex_color_qubo reading sources... [ 21%] reference/algorithms/generated/dwave_networkx.algorithms.cover.is_vertex_cover reading sources... [ 22%] reference/algorithms/generated/dwave_networkx.algorithms.cover.min_vertex_cover reading sources... [ 24%] reference/algorithms/generated/dwave_networkx.algorithms.cover.min_weighted_vertex_cover reading sources... [ 25%] reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.chimera_elimination_order reading sources... [ 26%] reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.elimination_order_width reading sources... [ 27%] reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.is_almost_simplicial reading sources... [ 29%] reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.is_simplicial reading sources... [ 30%] reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.max_cardinality_heuristic reading sources... [ 31%] reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.min_fill_heuristic reading sources... [ 32%] reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.min_width_heuristic reading sources... [ 34%] reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.minor_min_width reading sources... [ 35%] reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.pegasus_elimination_order reading sources... [ 36%] reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.treewidth_branch_and_bound reading sources... [ 37%] reference/algorithms/generated/dwave_networkx.algorithms.independent_set.maximum_weighted_independent_set_qubo reading sources... [ 39%] reference/algorithms/generated/dwave_networkx.algorithms.markov.markov_network_bqm reading sources... [ 40%] reference/algorithms/generated/dwave_networkx.algorithms.markov.sample_markov_network reading sources... [ 41%] reference/algorithms/generated/dwave_networkx.algorithms.matching.is_matching reading sources... [ 43%] reference/algorithms/generated/dwave_networkx.algorithms.matching.is_maximal_matching reading sources... [ 44%] reference/algorithms/generated/dwave_networkx.algorithms.matching.min_maximal_matching reading sources... [ 45%] reference/algorithms/generated/dwave_networkx.algorithms.max_cut.maximum_cut reading sources... [ 46%] reference/algorithms/generated/dwave_networkx.algorithms.max_cut.weighted_maximum_cut reading sources... [ 48%] reference/algorithms/generated/dwave_networkx.algorithms.social.structural_imbalance reading sources... [ 49%] reference/algorithms/generated/dwave_networkx.algorithms.social.structural_imbalance_ising reading sources... [ 50%] reference/algorithms/generated/dwave_networkx.algorithms.tsp.traveling_salesperson reading sources... [ 51%] reference/algorithms/generated/dwave_networkx.algorithms.tsp.traveling_salesperson_qubo reading sources... [ 53%] reference/algorithms/generated/dwave_networkx.canonical_chimera_labeling reading sources... [ 54%] reference/algorithms/generated/dwave_networkx.clique_number reading sources... [ 55%] reference/algorithms/generated/dwave_networkx.is_clique reading sources... [ 56%] reference/algorithms/generated/dwave_networkx.is_independent_set reading sources... [ 58%] reference/algorithms/generated/dwave_networkx.maximum_clique reading sources... [ 59%] reference/algorithms/generated/dwave_networkx.maximum_independent_set reading sources... [ 60%] reference/algorithms/generated/dwave_networkx.maximum_weighted_independent_set reading sources... [ 62%] reference/algorithms/index reading sources... [ 63%] reference/algorithms/markov reading sources... [ 64%] reference/algorithms/matching reading sources... [ 65%] reference/algorithms/max_cut reading sources... [ 67%] reference/algorithms/packing reading sources... [ 68%] reference/algorithms/social reading sources... [ 69%] reference/algorithms/tsp reading sources... [ 70%] reference/default_sampler reading sources... [ 72%] reference/drawing reading sources... [ 73%] reference/generated/dwave_networkx.chimera_graph reading sources... [ 74%] reference/generated/dwave_networkx.default_sampler.get_default_sampler reading sources... [ 75%] reference/generated/dwave_networkx.default_sampler.set_default_sampler reading sources... [ 77%] reference/generated/dwave_networkx.default_sampler.unset_default_sampler reading sources... [ 78%] reference/generated/dwave_networkx.drawing.chimera_layout.chimera_layout reading sources... [ 79%] reference/generated/dwave_networkx.drawing.chimera_layout.draw_chimera reading sources... [ 81%] reference/generated/dwave_networkx.exceptions.DWaveNetworkXException reading sources... [ 82%] reference/generated/dwave_networkx.exceptions.DWaveNetworkXMissingSampler reading sources... [ 83%] reference/generated/dwave_networkx.find_chimera_indices reading sources... [ 84%] reference/generated/dwave_networkx.markov_network reading sources... [ 86%] reference/generated/dwave_networkx.pegasus_coordinates.linear_to_nice reading sources... [ 87%] reference/generated/dwave_networkx.pegasus_coordinates.linear_to_pegasus reading sources... [ 88%] reference/generated/dwave_networkx.pegasus_coordinates.nice_to_linear reading sources... [ 89%] reference/generated/dwave_networkx.pegasus_coordinates.nice_to_pegasus reading sources... [ 91%] reference/generated/dwave_networkx.pegasus_coordinates.pegasus_to_linear reading sources... [ 92%] reference/generated/dwave_networkx.pegasus_coordinates.pegasus_to_nice reading sources... [ 93%] reference/generated/dwave_networkx.pegasus_graph reading sources... [ 94%] reference/generated/dwave_networkx.utils.decorators.binary_quadratic_model_sampler reading sources... [ 96%] reference/generators reading sources... [ 97%] reference/index reading sources... [ 98%] reference/utilities reading sources... [100%] reference/utilities/index /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/reference/algorithms/elimination_ordering.rst:36: WARNING: duplicate citation GD, other instance in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/bibliography.rst /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/dwave_networkx/algorithms/coloring.py:docstring of dwave_networkx.algorithms.coloring.min_vertex_color:35: WARNING: duplicate citation DWMP, other instance in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/bibliography.rst /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/dwave_networkx/algorithms/coloring.py:docstring of dwave_networkx.algorithms.coloring.vertex_color:31: WARNING: duplicate citation DWMP, other instance in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/reference/algorithms/generated/dwave_networkx.algorithms.coloring.min_vertex_color.rst /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/dwave_networkx/algorithms/cover.py:docstring of dwave_networkx.algorithms.cover.min_vertex_cover:56: WARNING: duplicate citation AL, other instance in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/bibliography.rst /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/dwave_networkx/algorithms/elimination_ordering.py:docstring of dwave_networkx.algorithms.elimination_ordering.treewidth_branch_and_bound:30: WARNING: duplicate citation GD, other instance in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/reference/algorithms/elimination_ordering.rst /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/dwave_networkx/algorithms/matching.py:docstring of dwave_networkx.algorithms.matching.min_maximal_matching:49: WARNING: duplicate citation AL, other instance in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/reference/algorithms/generated/dwave_networkx.algorithms.cover.min_vertex_cover.rst /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/dwave_networkx/algorithms/social.py:docstring of dwave_networkx.algorithms.social.structural_imbalance:62: WARNING: duplicate citation FIA, other instance in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/bibliography.rst /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/dwave_networkx/algorithms/clique.py:docstring of dwave_networkx.maximum_clique:47: WARNING: duplicate citation AL, other instance in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/reference/algorithms/generated/dwave_networkx.algorithms.matching.min_maximal_matching.rst /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/dwave_networkx/algorithms/independent_set.py:docstring of dwave_networkx.maximum_independent_set:54: WARNING: duplicate citation AL, other instance in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/reference/algorithms/generated/dwave_networkx.maximum_clique.rst /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/dwave_networkx/algorithms/independent_set.py:docstring of dwave_networkx.maximum_weighted_independent_set:46: WARNING: duplicate citation AL, other instance in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/reference/algorithms/generated/dwave_networkx.maximum_independent_set.rst /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/reference/algorithms/packing.rst:14: WARNING: duplicate label cover, other instance in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/reference/algorithms/cover.rst looking for now-outdated files... none found pickling environment... done checking consistency... /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/bibliography.rst:4: WARNING: Citation [NX] is not referenced. /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/reference/algorithms/generated/dwave_networkx.algorithms.social.structural_imbalance.rst:62: WARNING: Citation [FIA] is not referenced. done processing DWaveNetworkX.tex...index intro reference/index reference/algorithms/index reference/algorithms/canonicalization reference/algorithms/generated/dwave_networkx.canonical_chimera_labeling reference/algorithms/clique reference/algorithms/generated/dwave_networkx.maximum_clique reference/algorithms/generated/dwave_networkx.clique_number reference/algorithms/generated/dwave_networkx.is_clique reference/algorithms/coloring reference/algorithms/generated/dwave_networkx.algorithms.coloring.is_vertex_coloring reference/algorithms/generated/dwave_networkx.algorithms.coloring.min_vertex_color reference/algorithms/generated/dwave_networkx.algorithms.coloring.min_vertex_color_qubo reference/algorithms/generated/dwave_networkx.algorithms.coloring.vertex_color reference/algorithms/generated/dwave_networkx.algorithms.coloring.vertex_color_qubo reference/algorithms/cover reference/algorithms/generated/dwave_networkx.algorithms.cover.min_weighted_vertex_cover reference/algorithms/generated/dwave_networkx.algorithms.cover.min_vertex_cover reference/algorithms/generated/dwave_networkx.algorithms.cover.is_vertex_cover reference/algorithms/elimination_ordering reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.chimera_elimination_order reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.elimination_order_width reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.is_almost_simplicial reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.is_simplicial reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.max_cardinality_heuristic reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.minor_min_width reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.min_fill_heuristic reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.min_width_heuristic reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.pegasus_elimination_order reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.treewidth_branch_and_bound reference/algorithms/markov reference/algorithms/generated/dwave_networkx.algorithms.markov.sample_markov_network reference/algorithms/generated/dwave_networkx.algorithms.markov.markov_network_bqm reference/algorithms/matching reference/algorithms/generated/dwave_networkx.algorithms.matching.min_maximal_matching reference/algorithms/generated/dwave_networkx.algorithms.matching.is_matching reference/algorithms/generated/dwave_networkx.algorithms.matching.is_maximal_matching reference/algorithms/max_cut reference/algorithms/generated/dwave_networkx.algorithms.max_cut.maximum_cut reference/algorithms/generated/dwave_networkx.algorithms.max_cut.weighted_maximum_cut reference/algorithms/packing reference/algorithms/generated/dwave_networkx.maximum_weighted_independent_set reference/algorithms/generated/dwave_networkx.maximum_independent_set reference/algorithms/generated/dwave_networkx.is_independent_set reference/algorithms/generated/dwave_networkx.algorithms.independent_set.maximum_weighted_independent_set_qubo reference/algorithms/social reference/algorithms/generated/dwave_networkx.algorithms.social.structural_imbalance reference/algorithms/generated/dwave_networkx.algorithms.social.structural_imbalance_ising reference/algorithms/tsp reference/algorithms/generated/dwave_networkx.algorithms.tsp.traveling_salesperson reference/algorithms/generated/dwave_networkx.algorithms.tsp.traveling_salesperson_qubo reference/drawing reference/generated/dwave_networkx.drawing.chimera_layout.chimera_layout reference/generated/dwave_networkx.drawing.chimera_layout.draw_chimera reference/generators reference/generated/dwave_networkx.chimera_graph reference/generated/dwave_networkx.pegasus_graph reference/generated/dwave_networkx.markov_network reference/utilities reference/generated/dwave_networkx.utils.decorators.binary_quadratic_model_sampler reference/utilities/index reference/generated/dwave_networkx.find_chimera_indices reference/generated/dwave_networkx.pegasus_coordinates.linear_to_nice reference/generated/dwave_networkx.pegasus_coordinates.linear_to_pegasus reference/generated/dwave_networkx.pegasus_coordinates.nice_to_linear reference/generated/dwave_networkx.pegasus_coordinates.nice_to_pegasus reference/generated/dwave_networkx.pegasus_coordinates.pegasus_to_linear reference/generated/dwave_networkx.pegasus_coordinates.pegasus_to_nice reference/generated/dwave_networkx.exceptions.DWaveNetworkXException reference/generated/dwave_networkx.exceptions.DWaveNetworkXMissingSampler reference/default_sampler reference/generated/dwave_networkx.default_sampler.set_default_sampler reference/generated/dwave_networkx.default_sampler.unset_default_sampler reference/generated/dwave_networkx.default_sampler.get_default_sampler bibliography installation license resolving references... writing... done copying images... [ 11%] reference/algorithms/../../_images/Social.png copying images... [ 22%] reference/../_images/chimera_layout_0-rightside.png copying images... [ 33%] reference/algorithms/../../_images/MaxCut.png copying images... [ 44%] reference/algorithms/../../_images/clique.png copying images... [ 55%] reference/algorithms/../../_images/Cover.png copying images... [ 66%] reference/algorithms/../../_images/tsp.png copying images... [ 77%] reference/algorithms/../../_images/Problem_MapColoring.png copying images... [ 88%] reference/algorithms/../../_images/Match.png copying images... [100%] reference/../_images/find_chimera-unitcell.png copying TeX support files... done build succeeded, 13 warnings. The LaTeX files are in _build/latex. Run 'make' in that directory to run these through (pdf)latex (use `make latexpdf' here to do that automatically). [rtd-command-info] start-time: 2020-03-25T20:50:09.605503Z, end-time: 2020-03-25T20:50:09.942379Z, duration: 0, exit-code: 0 cat latexmkrc $latex = 'latex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $pdflatex = 'pdflatex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $lualatex = 'lualatex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $xelatex = 'xelatex --no-pdf ' . $ENV{'LATEXOPTS'} . ' %O %S'; $makeindex = 'makeindex -s python.ist %O -o %D %S'; add_cus_dep( "glo", "gls", 0, "makeglo" ); sub makeglo { return system( "makeindex -s gglo.ist -o '$_[0].gls' '$_[0].glo'" ); } [rtd-command-info] start-time: 2020-03-25T20:50:10.095387Z, end-time: 2020-03-25T20:50:14.664491Z, duration: 4, exit-code: 0 latexmk -r latexmkrc -pdf -f -dvi- -ps- -jobname=d-wave-systems-dwave-networkx -interaction=nonstopmode Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 1, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 2, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 3, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 4, chunk 1. Subroutine makeglo redefined at (eval 11) line 7, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 1, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 2, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 3, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 4, chunk 1. Latexmk: This is Latexmk, John Collins, 1 January 2015, version: 4.41. File::Glob::glob() will disappear in perl 5.30. Use File::Glob::bsd_glob() instead. at /usr/bin/latexmk line 7482. Rule 'pdflatex': Rules & subrules not known to be previously run: pdflatex Rule 'pdflatex': The following rules & subrules became out-of-date: 'pdflatex' ------------ Run number 1 of rule 'pdflatex' ------------ ------------ Running 'pdflatex -interaction=nonstopmode -recorder --jobname="d-wave-systems-dwave-networkx" "DWaveNetworkX.tex"' ------------ Latexmk: applying rule 'pdflatex'... This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./DWaveNetworkX.tex LaTeX2e <2017-04-15> Babel <3.18> and hyphenation patterns for 84 language(s) loaded. (./sphinxmanual.cls Document Class: sphinxmanual 2018/12/22 v1.8.3 Document class (Sphinx manual) (/usr/share/texlive/texmf-dist/tex/latex/base/report.cls Document Class: report 2014/09/29 v1.4h Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo))) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/ot1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/omsenc.dfu))) (/usr/share/texlive/texmf-dist/tex/latex/cmap/cmap.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def)<>) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty For additional information on amsmath, use the `?' option. (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty)) (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty (/usr/share/texlive/texmf-dist/tex/generic/babel/switch.def) (/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.def (/usr/share/texlive/texmf-dist/tex/generic/babel/txtbabel.def)))) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) (/usr/share/texlive/texmf-dist/tex/latex/fncychap/fncychap.sty) (./sphinx.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.def (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.dfu))) (/usr/share/texlive/texmf-dist/tex/latex/titlesec/titlesec.sty) (/usr/share/texlive/texmf-dist/tex/latex/tabulary/tabulary.sty (/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty)) (/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty) (/usr/share/texlive/texmf-dist/tex/latex/varwidth/varwidth.sty) (./sphinxmulticell.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty) (/usr/share/texlive/texmf-dist/tex/latex/framed/framed.sty) (/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty Style option: `fancyvrb' v2.7a, with DG/SPQR fixes, and firstline=lastline fix <2008/02/07> (tvz)) (./footnotehyper-sphinx.sty) (/usr/share/texlive/texmf-dist/tex/latex/float/float.sty) (/usr/share/texlive/texmf-dist/tex/latex/wrapfig/wrapfig.sty) (/usr/share/texlive/texmf-dist/tex/latex/parskip/parskip.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/upquote/upquote.sty) (/usr/share/texlive/texmf-dist/tex/latex/capt-of/capt-of.sty) (/usr/share/texlive/texmf-dist/tex/latex/needspace/needspace.sty) (/usr/share/texlive/texmf-dist/tex/latex/carlisle/remreset.sty) (./sphinxhighlight.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/kvsetkeys.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/infwarerr.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/etexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifluatex.sty))))) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifpdf.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifvtex.sty) (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty)) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/hypcap.sty) Writing index file d-wave-systems-dwave-networkx.idx (./d-wave-systems-dwave-networkx.aux) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1ptm.fd) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd)<><><><> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}] [2] [1] [2] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) [1] [2] Chapter 1. [3] [4] Chapter 2. (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [5] LaTeX Warning: Hyper reference `reference/algorithms/generated/dwave_networkx.c anonical_chimera_labeling:dwave_networkx.canonical_chimera_labeling' on page 6 undefined on input line 216. Package longtable Warning: Column widths have changed (longtable) in table 1 on input line 221. LaTeX Warning: Hyper reference `reference/algorithms/generated/dwave_networkx.m aximum_clique:dwave_networkx.maximum_clique' on page 6 undefined on input line 281. LaTeX Warning: Hyper reference `reference/algorithms/generated/dwave_networkx.c lique_number:dwave_networkx.clique_number' on page 6 undefined on input line 28 6. LaTeX Warning: Hyper reference `reference/algorithms/generated/dwave_networkx.i s_clique:dwave_networkx.is_clique' on page 6 undefined on input line 291. [6 <./clique.png>] Package longtable Warning: Column widths have changed (longtable) in table 2 on input line 296. [7] [8] LaTeX Warning: Hyper reference `reference/algorithms/generated/dwave_networkx.a lgorithms.coloring.is_vertex_coloring:dwave_networkx.algorithms.coloring.is_ver tex_coloring' on page 9 undefined on input line 509. LaTeX Warning: Hyper reference `reference/algorithms/generated/dwave_networkx.a lgorithms.coloring.min_vertex_color:dwave_networkx.algorithms.coloring.min_vert ex_color' on page 9 undefined on input line 514. Underfull \hbox (badness 7064) in paragraph at lines 514--515 []|\T1/pcr/m/sl/10 min_vertex_color\T1/ptm/m/n/10 (G[, sam-pler, chro-matic_lb, LaTeX Warning: Hyper reference `reference/algorithms/generated/dwave_networkx.a lgorithms.coloring.min_vertex_color_qubo:dwave_networkx.algorithms.coloring.min _vertex_color_qubo' on page 9 undefined on input line 519. LaTeX Warning: Hyper reference `reference/algorithms/generated/dwave_networkx.a lgorithms.coloring.vertex_color:dwave_networkx.algorithms.coloring.vertex_color ' on page 9 undefined on input line 524. LaTeX Warning: Hyper reference `reference/algorithms/generated/dwave_networkx.a lgorithms.coloring.vertex_color_qubo:dwave_networkx.algorithms.coloring.vertex_ color_qubo' on page 9 undefined on input line 529. Package longtable Warning: Column widths have changed (longtable) in table 3 on input line 534. [9 <./Problem_MapColoring.png>] LaTeX Warning: Citation `reference/algorithms/generated/dwave_networkx.algorith ms.coloring.vertex_color:dwmp' on page 10 undefined on input line 595. [10] LaTeX Warning: Citation `reference/algorithms/generated/dwave_networkx.algorith ms.coloring.vertex_color:dwmp' on page 11 undefined on input line 657. LaTeX Warning: Citation `reference/algorithms/generated/dwave_networkx.algorith ms.coloring.vertex_color:dwmp' on page 11 undefined on input line 703. [11] LaTeX Warning: Hyper reference `reference/algorithms/generated/dwave_networkx.a lgorithms.cover.min_weighted_vertex_cover:dwave_networkx.algorithms.cover.min_w eighted_vertex_cover' on page 12 undefined on input line 826. LaTeX Warning: Hyper reference `reference/algorithms/generated/dwave_networkx.a lgorithms.cover.min_vertex_cover:dwave_networkx.algorithms.cover.min_vertex_cov er' on page 12 undefined on input line 831. LaTeX Warning: Hyper reference `reference/algorithms/generated/dwave_networkx.a lgorithms.cover.is_vertex_cover:dwave_networkx.algorithms.cover.is_vertex_cover ' on page 12 undefined on input line 836. [12] Package longtable Warning: Column widths have changed (longtable) in table 4 on input line 841. LaTeX Warning: Citation `reference/algorithms/generated/dwave_networkx.maximum_ weighted_independent_set:al' on page 13 undefined on input line 904. Overfull \vbox (131.09991pt too high) has occurred while \output is active [13 <./Cover.png>] [14] LaTeX Warning: Citation `reference/algorithms/generated/dwave_networkx.algorith ms.elimination_ordering.treewidth_branch_and_bound:gd' on page 15 undefined on input line 1036. LaTeX Warning: Hyper reference `reference/algorithms/generated/dwave_networkx.a lgorithms.elimination_ordering.chimera_elimination_order:dwave_networkx.algorit hms.elimination_ordering.chimera_elimination_order' on page 15 undefined on inp ut line 1066. LaTeX Warning: Hyper reference `reference/algorithms/generated/dwave_networkx.a lgorithms.elimination_ordering.elimination_order_width:dwave_networkx.algorithm s.elimination_ordering.elimination_order_width' on page 15 undefined on input l ine 1071. LaTeX Warning: Hyper reference `reference/algorithms/generated/dwave_networkx.a lgorithms.elimination_ordering.is_almost_simplicial:dwave_networkx.algorithms.e limination_ordering.is_almost_simplicial' on page 15 undefined on input line 10 76. LaTeX Warning: Hyper reference `reference/algorithms/generated/dwave_networkx.a lgorithms.elimination_ordering.is_simplicial:dwave_networkx.algorithms.eliminat ion_ordering.is_simplicial' on page 15 undefined on input line 1081. LaTeX Warning: Hyper reference `reference/algorithms/generated/dwave_networkx.a lgorithms.elimination_ordering.max_cardinality_heuristic:dwave_networkx.algorit hms.elimination_ordering.max_cardinality_heuristic' on page 15 undefined on inp ut line 1086. LaTeX Warning: Hyper reference `reference/algorithms/generated/dwave_networkx.a lgorithms.elimination_ordering.minor_min_width:dwave_networkx.algorithms.elimin ation_ordering.minor_min_width' on page 15 undefined on input line 1091. LaTeX Warning: Hyper reference `reference/algorithms/generated/dwave_networkx.a lgorithms.elimination_ordering.min_fill_heuristic:dwave_networkx.algorithms.eli mination_ordering.min_fill_heuristic' on page 15 undefined on input line 1096. LaTeX Warning: Hyper reference `reference/algorithms/generated/dwave_networkx.a lgorithms.elimination_ordering.min_width_heuristic:dwave_networkx.algorithms.el imination_ordering.min_width_heuristic' on page 15 undefined on input line 1101 . LaTeX Warning: Hyper reference `reference/algorithms/generated/dwave_networkx.a lgorithms.elimination_ordering.pegasus_elimination_order:dwave_networkx.algorit hms.elimination_ordering.pegasus_elimination_order' on page 15 undefined on inp ut line 1106. LaTeX Warning: Hyper reference `reference/algorithms/generated/dwave_networkx.a lgorithms.elimination_ordering.treewidth_branch_and_bound:dwave_networkx.algori thms.elimination_ordering.treewidth_branch_and_bound' on page 15 undefined on i nput line 1111. Package longtable Warning: Column widths have changed (longtable) in table 5 on input line 1116. [15] [16] [17] LaTeX Warning: Citation `reference/algorithms/generated/dwave_networkx.algorith ms.elimination_ordering.treewidth_branch_and_bound:gd' on page 18 undefined on input line 1320. LaTeX Warning: Citation `reference/algorithms/generated/dwave_networkx.algorith ms.elimination_ordering.treewidth_branch_and_bound:gd' on page 18 undefined on input line 1355. [18] LaTeX Warning: Citation `reference/algorithms/generated/dwave_networkx.algorith ms.elimination_ordering.treewidth_branch_and_bound:gd' on page 19 undefined on input line 1395. LaTeX Warning: Citation `reference/algorithms/generated/dwave_networkx.algorith ms.elimination_ordering.treewidth_branch_and_bound:gd' on page 19 undefined on input line 1435. [19] LaTeX Warning: Citation `reference/algorithms/generated/dwave_networkx.algorith ms.elimination_ordering.pegasus_elimination_order:bbrr' on page 20 undefined on input line 1449. LaTeX Warning: Citation `reference/algorithms/generated/dwave_networkx.algorith ms.elimination_ordering.treewidth_branch_and_bound:gd' on page 20 undefined on input line 1491. [20] LaTeX Warning: Hyper reference `reference/algorithms/generated/dwave_networkx.a lgorithms.markov.sample_markov_network:dwave_networkx.algorithms.markov.sample_ markov_network' on page 21 undefined on input line 1560. LaTeX Warning: Hyper reference `reference/algorithms/generated/dwave_networkx.a lgorithms.markov.markov_network_bqm:dwave_networkx.algorithms.markov.markov_net work_bqm' on page 21 undefined on input line 1565. Package longtable Warning: Column widths have changed (longtable) in table 6 on input line 1570. LaTeX Warning: Hyper reference `reference/generated/dwave_networkx.markov_netwo rk:dwave_networkx.markov_network' on page 21 undefined on input line 1582. (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pcr.fd) [21] LaTeX Warning: Hyper reference `reference/generated/dwave_networkx.markov_netwo rk:dwave_networkx.markov_network' on page 22 undefined on input line 1677. LaTeX Warning: Hyper reference `reference/algorithms/generated/dwave_networkx.a lgorithms.matching.min_maximal_matching:dwave_networkx.algorithms.matching.min_ maximal_matching' on page 22 undefined on input line 1721. LaTeX Warning: Hyper reference `reference/algorithms/generated/dwave_networkx.a lgorithms.matching.is_matching:dwave_networkx.algorithms.matching.is_matching' on page 22 undefined on input line 1726. LaTeX Warning: Hyper reference `reference/algorithms/generated/dwave_networkx.a lgorithms.matching.is_maximal_matching:dwave_networkx.algorithms.matching.is_ma ximal_matching' on page 22 undefined on input line 1731. [22] Package longtable Warning: Column widths have changed (longtable) in table 7 on input line 1736. Overfull \vbox (174.32007pt too high) has occurred while \output is active [23 <./Match.png>] [24] LaTeX Warning: Hyper reference `reference/algorithms/generated/dwave_networkx.a lgorithms.max_cut.maximum_cut:dwave_networkx.algorithms.max_cut.maximum_cut' on page 25 undefined on input line 1930. LaTeX Warning: Hyper reference `reference/algorithms/generated/dwave_networkx.a lgorithms.max_cut.weighted_maximum_cut:dwave_networkx.algorithms.max_cut.weight ed_maximum_cut' on page 25 undefined on input line 1935. Package longtable Warning: Column widths have changed (longtable) in table 8 on input line 1940. [25 <./MaxCut.png>] [26] LaTeX Warning: Hyper reference `reference/algorithms/generated/dwave_networkx.m aximum_weighted_independent_set:dwave_networkx.maximum_weighted_independent_set ' on page 27 undefined on input line 2091. Underfull \hbox (badness 10000) in paragraph at lines 2091--2092 []|\T1/pcr/m/sl/10 maximum_weighted_independent_set\T1/ptm/m/n/10 (G[, LaTeX Warning: Hyper reference `reference/algorithms/generated/dwave_networkx.m aximum_independent_set:dwave_networkx.maximum_independent_set' on page 27 undef ined on input line 2096. Underfull \hbox (badness 10000) in paragraph at lines 2096--2097 []|\T1/pcr/m/sl/10 maximum_independent_set\T1/ptm/m/n/10 (G[, sam-pler, la- LaTeX Warning: Hyper reference `reference/algorithms/generated/dwave_networkx.i s_independent_set:dwave_networkx.is_independent_set' on page 27 undefined on in put line 2101. Package longtable Warning: Column widths have changed (longtable) in table 9 on input line 2106. [27] [28] LaTeX Warning: Hyper reference `reference/algorithms/generated/dwave_networkx.a lgorithms.independent_set.maximum_weighted_independent_set_qubo:dwave_networkx. algorithms.independent_set.maximum_weighted_independent_set_qubo' on page 29 un defined on input line 2316. Overfull \hbox (16.10236pt too wide) in paragraph at lines 2316--2317 []|\T1/pcr/m/sl/10 maximum_weighted_independent_set_qubo\T1/ptm/m/n/10 (G[, [29] Package longtable Warning: Column widths have changed (longtable) in table 10 on input line 2321. LaTeX Warning: Hyper reference `reference/algorithms/generated/dwave_networkx.a lgorithms.social.structural_imbalance:dwave_networkx.algorithms.social.structur al_imbalance' on page 30 undefined on input line 2405. LaTeX Warning: Hyper reference `reference/algorithms/generated/dwave_networkx.a lgorithms.social.structural_imbalance_ising:dwave_networkx.algorithms.social.st ructural_imbalance_ising' on page 30 undefined on input line 2410. Package longtable Warning: Column widths have changed (longtable) in table 11 on input line 2415. [30] [31 <./Social.png>] [32] LaTeX Warning: Hyper reference `reference/algorithms/generated/dwave_networkx.a lgorithms.tsp.traveling_salesperson:dwave_networkx.algorithms.tsp.traveling_sal esperson' on page 33 undefined on input line 2592. LaTeX Warning: Hyper reference `reference/algorithms/generated/dwave_networkx.a lgorithms.tsp.traveling_salesperson_qubo:dwave_networkx.algorithms.tsp.travelin g_salesperson_qubo' on page 33 undefined on input line 2597. Underfull \hbox (badness 10000) in paragraph at lines 2597--2598 []|\T1/pcr/m/sl/10 traveling_salesperson_qubo\T1/ptm/m/n/10 (G[, la-grange, Package longtable Warning: Column widths have changed (longtable) in table 12 on input line 2602. [33] [34 <./tsp.png>] LaTeX Warning: Hyper reference `reference/generated/dwave_networkx.drawing.chim era_layout.chimera_layout:dwave_networkx.drawing.chimera_layout.chimera_layout' on page 35 undefined on input line 2752. LaTeX Warning: Hyper reference `reference/generated/dwave_networkx.drawing.chim era_layout.draw_chimera:dwave_networkx.drawing.chimera_layout.draw_chimera' on page 35 undefined on input line 2757. [35] Package longtable Warning: Column widths have changed (longtable) in table 13 on input line 2762. [36] LaTeX Warning: Hyper reference `reference/generated/dwave_networkx.chimera_grap h:dwave_networkx.chimera_graph' on page 37 undefined on input line 2921. LaTeX Warning: Hyper reference `reference/generated/dwave_networkx.pegasus_grap h:dwave_networkx.pegasus_graph' on page 37 undefined on input line 2926. Package longtable Warning: Column widths have changed (longtable) in table 14 on input line 2931. [37] Underfull \hbox (badness 7486) in paragraph at lines 2966--2969 []\T1/pcr/b/n/10 data \T1/ptm/m/n/10 ([][]\T1/pcr/m/sl/10 bool[][] (optional, d efault True)\T1/ptm/m/n/10 ) ^^U If True, each node has a [38 <./chimera_layout_0-rightside.png>] [39] Underfull \hbox (badness 7981) in paragraph at lines 3098--3106 []\T1/pcr/b/n/10 nice_coordinates \T1/ptm/m/n/10 ([][]\T1/pcr/m/sl/10 bool[][], optional (default False)\T1/ptm/m/n/10 ) ^^U If the \T1/ptm/m/it/10 off- [40] LaTeX Warning: Hyper reference `reference/generated/dwave_networkx.markov_netwo rk:dwave_networkx.markov_network' on page 41 undefined on input line 3299. [41] Package longtable Warning: Column widths have changed (longtable) in table 15 on input line 3304. LaTeX Warning: Hyper reference `reference/generated/dwave_networkx.utils.decora tors.binary_quadratic_model_sampler:dwave_networkx.utils.decorators.binary_quad ratic_model_sampler' on page 42 undefined on input line 3371. Overfull \hbox (10.66203pt too wide) in paragraph at lines 3371--3372 []|\T1/pcr/m/sl/10 binary_quadratic_model_sampler\T1/ptm/m/n/10 (which_args)| Package longtable Warning: Column widths have changed (longtable) in table 16 on input line 3376. Overfull \vbox (224.60953pt too high) has occurred while \output is active [42 <./find_chimera-unitcell.png>] Overfull \vbox (2.18257pt too high) detected at line 3477 [43] LaTeX Warning: Hyper reference `reference/generated/dwave_networkx.chimera_grap h:dwave_networkx.chimera_graph' on page 44 undefined on input line 3535. [44] LaTeX Warning: Hyper reference `reference/utilities/index:index-conversion-clas ses' on page 45 undefined on input line 3542. LaTeX Warning: Hyper reference `reference/generated/dwave_networkx.find_chimera _indices:dwave_networkx.find_chimera_indices' on page 45 undefined on input lin e 3562. Package longtable Warning: Column widths have changed (longtable) in table 17 on input line 3567. LaTeX Warning: Hyper reference `reference/generated/dwave_networkx.chimera_grap h:dwave_networkx.chimera_graph' on page 45 undefined on input line 3577. LaTeX Warning: Hyper reference `reference/generated/dwave_networkx.pegasus_coor dinates.linear_to_nice:dwave_networkx.pegasus_coordinates.linear_to_nice' on pa ge 45 undefined on input line 3631. LaTeX Warning: Hyper reference `reference/generated/dwave_networkx.pegasus_coor dinates.linear_to_pegasus:dwave_networkx.pegasus_coordinates.linear_to_pegasus' on page 45 undefined on input line 3636. Underfull \hbox (badness 10000) in paragraph at lines 3636--3637 []|\T1/pcr/m/sl/10 pegasus_coordinates. LaTeX Warning: Hyper reference `reference/generated/dwave_networkx.pegasus_coor dinates.nice_to_linear:dwave_networkx.pegasus_coordinates.nice_to_linear' on pa ge 45 undefined on input line 3641. LaTeX Warning: Hyper reference `reference/generated/dwave_networkx.pegasus_coor dinates.nice_to_pegasus:dwave_networkx.pegasus_coordinates.nice_to_pegasus' on page 45 undefined on input line 3646. LaTeX Warning: Hyper reference `reference/generated/dwave_networkx.pegasus_coor dinates.pegasus_to_linear:dwave_networkx.pegasus_coordinates.pegasus_to_linear' on page 45 undefined on input line 3651. Underfull \hbox (badness 10000) in paragraph at lines 3651--3652 []|\T1/pcr/m/sl/10 pegasus_coordinates. LaTeX Warning: Hyper reference `reference/generated/dwave_networkx.pegasus_coor dinates.pegasus_to_nice:dwave_networkx.pegasus_coordinates.pegasus_to_nice' on page 45 undefined on input line 3656. Package longtable Warning: Column widths have changed (longtable) in table 18 on input line 3661. [45] [46] LaTeX Warning: Hyper reference `reference/generated/dwave_networkx.exceptions.D WaveNetworkXException:dwave_networkx.exceptions.DWaveNetworkXException' on page 47 undefined on input line 3826. LaTeX Warning: Hyper reference `reference/generated/dwave_networkx.exceptions.D WaveNetworkXMissingSampler:dwave_networkx.exceptions.DWaveNetworkXMissingSample r' on page 47 undefined on input line 3831. Package longtable Warning: Column widths have changed (longtable) in table 19 on input line 3836. [47] LaTeX Warning: Hyper reference `reference/generated/dwave_networkx.default_samp ler.set_default_sampler:dwave_networkx.default_sampler.set_default_sampler' on page 48 undefined on input line 3940. LaTeX Warning: Hyper reference `reference/generated/dwave_networkx.default_samp ler.unset_default_sampler:dwave_networkx.default_sampler.unset_default_sampler' on page 48 undefined on input line 3945. LaTeX Warning: Hyper reference `reference/generated/dwave_networkx.default_samp ler.get_default_sampler:dwave_networkx.default_sampler.get_default_sampler' on page 48 undefined on input line 3950. Package longtable Warning: Column widths have changed (longtable) in table 20 on input line 3955. [48] [49] [50] [51] [52] [53] [54] LaTeX Warning: Reference `reference/algorithms/canonicalization:module-dwave_ne tworkx.algorithms.canonicalization' on page 55 undefined on input line 4331. Overfull \hbox (24.6225pt too wide) in paragraph at lines 4331--4332 []\T1/pcr/m/n/10 dwave_networkx.algorithms.canonicalization\T1/ptm/m/n/10 , LaTeX Warning: Reference `reference/algorithms/clique:module-dwave_networkx.alg orithms.clique' on page 55 undefined on input line 4332. LaTeX Warning: Reference `reference/algorithms/coloring:module-dwave_networkx.a lgorithms.coloring' on page 55 undefined on input line 4333. LaTeX Warning: Reference `reference/algorithms/cover:module-dwave_networkx.algo rithms.cover' on page 55 undefined on input line 4334. LaTeX Warning: Reference `reference/algorithms/elimination_ordering:module-dwav e_networkx.algorithms.elimination_ordering' on page 55 undefined on input line 4335. Overfull \hbox (48.6225pt too wide) in paragraph at lines 4335--4336 []\T1/pcr/m/n/10 dwave_networkx.algorithms.elimination_ordering\T1/ptm/m/n/10 , LaTeX Warning: Reference `reference/algorithms/packing:module-dwave_networkx.al gorithms.independent_set' on page 55 undefined on input line 4336. Overfull \hbox (18.6225pt too wide) in paragraph at lines 4336--4337 []\T1/pcr/m/n/10 dwave_networkx.algorithms.independent_set\T1/ptm/m/n/10 , LaTeX Warning: Reference `reference/algorithms/markov:module-dwave_networkx.alg orithms.markov' on page 55 undefined on input line 4337. LaTeX Warning: Reference `reference/algorithms/matching:module-dwave_networkx.a lgorithms.matching' on page 55 undefined on input line 4338. LaTeX Warning: Reference `reference/algorithms/max_cut:module-dwave_networkx.al gorithms.max_cut' on page 55 undefined on input line 4339. LaTeX Warning: Reference `reference/algorithms/social:module-dwave_networkx.alg orithms.social' on page 55 undefined on input line 4340. LaTeX Warning: Reference `reference/algorithms/tsp:module-dwave_networkx.algori thms.tsp' on page 55 undefined on input line 4341. LaTeX Warning: Reference `reference/utilities/index:module-dwave_networkx' on p age 55 undefined on input line 4344. LaTeX Warning: Reference `reference/default_sampler:module-dwave_networkx.defau lt_sampler' on page 55 undefined on input line 4345. LaTeX Warning: Reference `reference/drawing:module-dwave_networkx.drawing.chime ra_layout' on page 55 undefined on input line 4346. Underfull \hbox (badness 10000) in paragraph at lines 4346--4347 []\T1/pcr/m/n/10 dwave_networkx.drawing.chimera_layout\T1/ptm/m/n/10 , LaTeX Warning: Reference `reference/utilities:module-dwave_networkx.exceptions' on page 55 undefined on input line 4349. LaTeX Warning: Reference `reference/utilities:module-dwave_networkx.utils' on p age 55 undefined on input line 4352. LaTeX Warning: Reference `reference/utilities:module-dwave_networkx.utils.decor ators' on page 55 undefined on input line 4353. [55] No file d-wave-systems-dwave-networkx.ind. Package longtable Warning: Table widths have changed. Rerun LaTeX. (./d-wave-systems-dwave-networkx.aux) Package rerunfilecheck Warning: File `d-wave-systems-dwave-networkx.out' has ch anged. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on d-wave-systems-dwave-networkx.pdf (59 pages, 691406 bytes). Transcript written on d-wave-systems-dwave-networkx.log. Latexmk: Index file 'd-wave-systems-dwave-networkx.idx' was written Latexmk: Missing input file: 'd-wave-systems-dwave-networkx.ind' from line 'No file d-wave-systems-dwave-networkx.ind.' Latexmk: References changed. Latexmk: References changed. Latexmk: Log file says output to 'd-wave-systems-dwave-networkx.pdf' Latexmk: List of undefined refs and citations: Citation `reference/algorithms/generated/dwave_networkx.algorithms.coloring.vertex_color:dwmp' on page 10 undefined on input line 595 Citation `reference/algorithms/generated/dwave_networkx.algorithms.coloring.vertex_color:dwmp' on page 11 undefined on input line 657 Citation `reference/algorithms/generated/dwave_networkx.algorithms.coloring.vertex_color:dwmp' on page 11 undefined on input line 703 Citation `reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.pegasus_elimination_order:bbrr' on page 20 undefined on input line 1449 Citation `reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.treewidth_branch_and_bound:gd' on page 15 undefined on input line 1036 Citation `reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.treewidth_branch_and_bound:gd' on page 18 undefined on input line 1320 Citation `reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.treewidth_branch_and_bound:gd' on page 18 undefined on input line 1355 Citation `reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.treewidth_branch_and_bound:gd' on page 19 undefined on input line 1395 Citation `reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.treewidth_branch_and_bound:gd' on page 19 undefined on input line 1435 Citation `reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.treewidth_branch_and_bound:gd' on page 20 undefined on input line 1491 Citation `reference/algorithms/generated/dwave_networkx.maximum_weighted_independent_set:al' on page 13 undefined on input line 904 Reference `reference/algorithms/canonicalization:module-dwave_networkx.algorithms.canonicalization' on page 55 undefined on input line 4331 Reference `reference/algorithms/clique:module-dwave_networkx.algorithms.clique' on page 55 undefined on input line 4332 Reference `reference/algorithms/coloring:module-dwave_networkx.algorithms.coloring' on page 55 undefined on input line 4333 Reference `reference/algorithms/cover:module-dwave_networkx.algorithms.cover' on page 55 undefined on input line 4334 Reference `reference/algorithms/elimination_ordering:module-dwave_networkx.algorithms.elimination_ordering' on page 55 undefined on input line 4335 Reference `reference/algorithms/markov:module-dwave_networkx.algorithms.markov' on page 55 undefined on input line 4337 Reference `reference/algorithms/matching:module-dwave_networkx.algorithms.matching' on page 55 undefined on input line 4338 Reference `reference/algorithms/max_cut:module-dwave_networkx.algorithms.max_cut' on page 55 undefined on input line 4339 Reference `reference/algorithms/packing:module-dwave_networkx.algorithms.independent_set' on page 55 undefined on input line 4336 Reference `reference/algorithms/social:module-dwave_networkx.algorithms.social' on page 55 undefined on input line 4340 Reference `reference/algorithms/tsp:module-dwave_networkx.algorithms.tsp' on page 55 undefined on input line 4341 Reference `reference/default_sampler:module-dwave_networkx.default_sampler' on page 55 undefined on input line 4345 Reference `reference/drawing:module-dwave_networkx.drawing.chimera_layout' on page 55 undefined on input line 4346 Reference `reference/utilities/index:module-dwave_networkx' on page 55 undefined on input line 4344 Reference `reference/utilities:module-dwave_networkx.exceptions' on page 55 undefined on input line 4349 Reference `reference/utilities:module-dwave_networkx.utils' on page 55 undefined on input line 4352 Reference `reference/utilities:module-dwave_networkx.utils.decorators' on page 55 undefined on input line 4353 Latexmk: Summary of warnings: Latex failed to resolve 17 reference(s) Latex failed to resolve 11 citation(s) Rule 'makeindex d-wave-systems-dwave-networkx.idx': File changes, etc: Non-existent destination files: 'd-wave-systems-dwave-networkx.ind' ------------ Run number 1 of rule 'makeindex d-wave-systems-dwave-networkx.idx' ------------ ------------ Running 'makeindex -s python.ist -o "d-wave-systems-dwave-networkx.ind" "d-wave-systems-dwave-networkx.idx"' ------------ Latexmk: applying rule 'makeindex d-wave-systems-dwave-networkx.idx'... This is makeindex, version 2.15 [TeX Live 2017] (kpathsea + Thai support). Scanning style file ./python.ist.......done (7 attributes redefined, 0 ignored). Scanning input file d-wave-systems-dwave-networkx.idx....done (73 entries accepted, 0 rejected). Sorting entries....done (481 comparisons). Generating output file d-wave-systems-dwave-networkx.ind....done (166 lines written, 0 warnings). Output written in d-wave-systems-dwave-networkx.ind. Transcript written in d-wave-systems-dwave-networkx.ilg. Rule 'pdflatex': File changes, etc: Changed files, or newly in use since previous run(s): 'd-wave-systems-dwave-networkx.aux' 'd-wave-systems-dwave-networkx.ind' ------------ Run number 2 of rule 'pdflatex' ------------ ------------ Running 'pdflatex -interaction=nonstopmode -recorder --jobname="d-wave-systems-dwave-networkx" "DWaveNetworkX.tex"' ------------ Latexmk: applying rule 'pdflatex'... This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./DWaveNetworkX.tex LaTeX2e <2017-04-15> Babel <3.18> and hyphenation patterns for 84 language(s) loaded. (./sphinxmanual.cls Document Class: sphinxmanual 2018/12/22 v1.8.3 Document class (Sphinx manual) (/usr/share/texlive/texmf-dist/tex/latex/base/report.cls Document Class: report 2014/09/29 v1.4h Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo))) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/ot1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/omsenc.dfu))) (/usr/share/texlive/texmf-dist/tex/latex/cmap/cmap.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def)<>) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty For additional information on amsmath, use the `?' option. (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty)) (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty (/usr/share/texlive/texmf-dist/tex/generic/babel/switch.def) (/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.def (/usr/share/texlive/texmf-dist/tex/generic/babel/txtbabel.def)))) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) (/usr/share/texlive/texmf-dist/tex/latex/fncychap/fncychap.sty) (./sphinx.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.def (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.dfu))) (/usr/share/texlive/texmf-dist/tex/latex/titlesec/titlesec.sty) (/usr/share/texlive/texmf-dist/tex/latex/tabulary/tabulary.sty (/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty)) (/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty) (/usr/share/texlive/texmf-dist/tex/latex/varwidth/varwidth.sty) (./sphinxmulticell.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty) (/usr/share/texlive/texmf-dist/tex/latex/framed/framed.sty) (/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty Style option: `fancyvrb' v2.7a, with DG/SPQR fixes, and firstline=lastline fix <2008/02/07> (tvz)) (./footnotehyper-sphinx.sty) (/usr/share/texlive/texmf-dist/tex/latex/float/float.sty) (/usr/share/texlive/texmf-dist/tex/latex/wrapfig/wrapfig.sty) (/usr/share/texlive/texmf-dist/tex/latex/parskip/parskip.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/upquote/upquote.sty) (/usr/share/texlive/texmf-dist/tex/latex/capt-of/capt-of.sty) (/usr/share/texlive/texmf-dist/tex/latex/needspace/needspace.sty) (/usr/share/texlive/texmf-dist/tex/latex/carlisle/remreset.sty) (./sphinxhighlight.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/kvsetkeys.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/infwarerr.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/etexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifluatex.sty))))) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifpdf.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifvtex.sty) (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty)) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/hypcap.sty) Writing index file d-wave-systems-dwave-networkx.idx (./d-wave-systems-dwave-networkx.aux) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1ptm.fd) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) (./d-wave-systems-dwave-networkx.out) (./d-wave-systems-dwave-networkx.out) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd)<><><><> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}] [2] (./d-wave-systems-dwave-networkx.toc) [1] [2] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) [1] [2] Chapter 1. [3] [4] Chapter 2. (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [5] [6 <./clique.png >] [7] [8] Underfull \hbox (badness 7064) in paragraph at lines 514--515 []|[][]\T1/pcr/m/sl/10 min_vertex_color[][]\T1/ptm/m/n/10 (G[, sam-pler, chro-m atic_lb, [9 <./Problem_MapColoring.png>] [10] [11] [12] Overfull \vbox (131.09991pt too high) has occurred while \output is active [13 <./Cover.png>] [14] [15] [16] [17] [18] [19] [20] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pcr.fd) [21] [22] Overfull \vbox (174.32007pt too high) has occurred while \output is active [23 <./Match.png>] [24] [25 <./MaxCut.png>] [26] Underfull \hbox (badness 10000) in paragraph at lines 2091--2092 []|[][]\T1/pcr/m/sl/10 maximum_weighted_independent_set[][]\T1/ptm/m/n/10 (G[, Underfull \hbox (badness 10000) in paragraph at lines 2096--2097 []|[][]\T1/pcr/m/sl/10 maximum_independent_set[][]\T1/ptm/m/n/10 (G[, sam-pler, la- [27] [28] Overfull \hbox (16.10236pt too wide) in paragraph at lines 2316--2317 []|[][]\T1/pcr/m/sl/10 maximum_weighted_independent_set_qubo[][]\T1/ptm/m/n/10 (G[, [29] [30] [31 <./Social.png>] [32] Underfull \hbox (badness 10000) in paragraph at lines 2597--2598 []|[][]\T1/pcr/m/sl/10 traveling_salesperson_qubo[][]\T1/ptm/m/n/10 (G[, la-gra nge, [33] [34 <./tsp.png>] [35] [36] [37] Underfull \hbox (badness 7486) in paragraph at lines 2966--2969 []\T1/pcr/b/n/10 data \T1/ptm/m/n/10 ([][]\T1/pcr/m/sl/10 bool[][] (optional, d efault True)\T1/ptm/m/n/10 ) ^^U If True, each node has a [38 <./chimera_layout_0-rightside.png>] [39] Underfull \hbox (badness 7981) in paragraph at lines 3098--3106 []\T1/pcr/b/n/10 nice_coordinates \T1/ptm/m/n/10 ([][]\T1/pcr/m/sl/10 bool[][], optional (default False)\T1/ptm/m/n/10 ) ^^U If the \T1/ptm/m/it/10 off- [40] [41] Overfull \hbox (10.66203pt too wide) in paragraph at lines 3371--3372 []|[][]\T1/pcr/m/sl/10 binary_quadratic_model_sampler[][]\T1/ptm/m/n/10 (which_ args)| Overfull \vbox (224.60953pt too high) has occurred while \output is active [42 <./find_chimera-unitcell.png>] Overfull \vbox (2.18257pt too high) detected at line 3477 [43] [44] Underfull \hbox (badness 10000) in paragraph at lines 3636--3637 []|[][]\T1/pcr/m/sl/10 pegasus_coordinates. Underfull \hbox (badness 10000) in paragraph at lines 3651--3652 []|[][]\T1/pcr/m/sl/10 pegasus_coordinates. [45] [46] [47] [48] [49] [50] [51] [52] [53] [54] Overfull \hbox (24.6225pt too wide) in paragraph at lines 4331--4332 []\T1/pcr/m/n/10 dwave_networkx.algorithms.canonicalization\T1/ptm/m/n/10 , Overfull \hbox (48.6225pt too wide) in paragraph at lines 4335--4336 []\T1/pcr/m/n/10 dwave_networkx.algorithms.elimination_ordering\T1/ptm/m/n/10 , Overfull \hbox (18.6225pt too wide) in paragraph at lines 4336--4337 []\T1/pcr/m/n/10 dwave_networkx.algorithms.independent_set\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4346--4347 []\T1/pcr/m/n/10 dwave_networkx.drawing.chimera_layout\T1/ptm/m/n/10 , [55] (./d-wave-systems-dwave-networkx.ind [56] Underfull \hbox (badness 10000) in paragraph at lines 13--15 []\T1/pcr/m/n/10 canonical_chimera_labeling() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 i n mod-ule Underfull \hbox (badness 10000) in paragraph at lines 16--18 []\T1/pcr/m/n/10 chimera_elimination_order() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (16.6902pt too wide) in paragraph at lines 16--18 \T1/ptm/m/it/10 dwave_networkx.algorithms.elimination_ordering\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 19--21 []\T1/pcr/m/n/10 chimera_layout() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 19--21 \T1/ptm/m/it/10 dwave_networkx.drawing.chimera_layout\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 25--27 []\T1/pcr/m/n/10 draw_chimera() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 25--27 \T1/ptm/m/it/10 dwave_networkx.drawing.chimera_layout\T1/ptm/m/n/10 ), Overfull \hbox (22.1225pt too wide) in paragraph at lines 28--29 []\T1/pcr/m/n/10 dwave_networkx.algorithms.canonicalization Underfull \hbox (badness 10000) in paragraph at lines 29--30 []\T1/pcr/m/n/10 dwave_networkx.algorithms.clique \T1/ptm/m/n/10 (\T1/ptm/m/it/ 10 mod- Overfull \hbox (46.1225pt too wide) in paragraph at lines 32--34 []\T1/pcr/m/n/10 dwave_networkx.algorithms.elimination_ordering Overfull \hbox (16.1225pt too wide) in paragraph at lines 34--35 []\T1/pcr/m/n/10 dwave_networkx.algorithms.independent_set Underfull \hbox (badness 10000) in paragraph at lines 35--36 []\T1/pcr/m/n/10 dwave_networkx.algorithms.markov \T1/ptm/m/n/10 (\T1/ptm/m/it/ 10 mod- Underfull \hbox (badness 10000) in paragraph at lines 38--39 []\T1/pcr/m/n/10 dwave_networkx.algorithms.social \T1/ptm/m/n/10 (\T1/ptm/m/it/ 10 mod- Underfull \hbox (badness 10000) in paragraph at lines 40--41 []\T1/pcr/m/n/10 dwave_networkx.default_sampler \T1/ptm/m/n/10 (\T1/ptm/m/it/10 mod-ule\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 41--42 []\T1/pcr/m/n/10 dwave_networkx.drawing.chimera_layout Underfull \hbox (badness 10000) in paragraph at lines 50--52 []\T1/pcr/m/n/10 elimination_order_width() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in m od-ule Overfull \hbox (16.6902pt too wide) in paragraph at lines 50--52 \T1/ptm/m/it/10 dwave_networkx.algorithms.elimination_ordering\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 55--56 []\T1/pcr/m/n/10 find_chimera_indices() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod- ule Underfull \hbox (badness 10000) in paragraph at lines 59--61 []\T1/pcr/m/n/10 get_default_sampler() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 64--66 []\T1/pcr/m/n/10 is_almost_simplicial() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod- ule Overfull \hbox (16.6902pt too wide) in paragraph at lines 64--66 \T1/ptm/m/it/10 dwave_networkx.algorithms.elimination_ordering\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 67--68 []\T1/pcr/m/n/10 is_independent_set() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 68--70 []\T1/pcr/m/n/10 is_matching() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 70--72 []\T1/pcr/m/n/10 is_maximal_matching() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 72--74 []\T1/pcr/m/n/10 is_simplicial() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (16.6902pt too wide) in paragraph at lines 72--74 \T1/ptm/m/it/10 dwave_networkx.algorithms.elimination_ordering\T1/ptm/m/n/10 ), [57] Underfull \hbox (badness 10000) in paragraph at lines 74--76 []\T1/pcr/m/n/10 is_vertex_coloring() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 76--78 []\T1/pcr/m/n/10 is_vertex_cover() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 82--83 []\T1/pcr/m/n/10 linear_to_pegasus() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 pe-ga-sus_ coordinates Underfull \hbox (badness 10000) in paragraph at lines 87--89 []\T1/pcr/m/n/10 markov_network_bqm() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 89--91 []\T1/pcr/m/n/10 max_cardinality_heuristic() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (16.6902pt too wide) in paragraph at lines 89--91 \T1/ptm/m/it/10 dwave_networkx.algorithms.elimination_ordering\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 92--94 []\T1/pcr/m/n/10 maximum_cut() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 94--95 []\T1/pcr/m/n/10 maximum_independent_set() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in m od-ule Underfull \hbox (badness 10000) in paragraph at lines 95--97 []\T1/pcr/m/n/10 maximum_weighted_independent_set() \T1/ptm/m/n/10 (\T1/ptm/m/i t/10 in Overfull \hbox (4.1225pt too wide) in paragraph at lines 97--99 []\T1/pcr/m/n/10 maximum_weighted_independent_set_qubo() Overfull \hbox (41.02017pt too wide) in paragraph at lines 97--99 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule dwave_networkx.algorithms.independen t_set\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 99--101 []\T1/pcr/m/n/10 min_fill_heuristic() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ul e Overfull \hbox (16.6902pt too wide) in paragraph at lines 99--101 \T1/ptm/m/it/10 dwave_networkx.algorithms.elimination_ordering\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 101--103 []\T1/pcr/m/n/10 min_maximal_matching() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod- ule Underfull \hbox (badness 10000) in paragraph at lines 103--105 []\T1/pcr/m/n/10 min_vertex_color() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 105--107 []\T1/pcr/m/n/10 min_vertex_color_qubo() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod -ule Underfull \hbox (badness 10000) in paragraph at lines 107--109 []\T1/pcr/m/n/10 min_vertex_cover() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 109--111 []\T1/pcr/m/n/10 min_weighted_vertex_cover() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 111--113 []\T1/pcr/m/n/10 min_width_heuristic() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-u le Overfull \hbox (16.6902pt too wide) in paragraph at lines 111--113 \T1/ptm/m/it/10 dwave_networkx.algorithms.elimination_ordering\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 113--115 []\T1/pcr/m/n/10 minor_min_width() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (16.6902pt too wide) in paragraph at lines 113--115 \T1/ptm/m/it/10 dwave_networkx.algorithms.elimination_ordering\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 119--120 []\T1/pcr/m/n/10 nice_to_pegasus() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 pe-ga-sus_co ordinates static Underfull \hbox (badness 10000) in paragraph at lines 123--125 []\T1/pcr/m/n/10 pegasus_elimination_order() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (16.6902pt too wide) in paragraph at lines 123--125 \T1/ptm/m/it/10 dwave_networkx.algorithms.elimination_ordering\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 126--127 []\T1/pcr/m/n/10 pegasus_to_linear() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 pe-ga-sus_ coordinates Underfull \hbox (badness 10000) in paragraph at lines 127--128 []\T1/pcr/m/n/10 pegasus_to_nice() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 pe-ga-sus_co ordinates static Underfull \hbox (badness 10000) in paragraph at lines 131--133 []\T1/pcr/m/n/10 sample_markov_network() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod -ule Underfull \hbox (badness 10000) in paragraph at lines 133--135 []\T1/pcr/m/n/10 set_default_sampler() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 135--137 []\T1/pcr/m/n/10 structural_imbalance() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod- ule Underfull \hbox (badness 10000) in paragraph at lines 137--139 []\T1/pcr/m/n/10 structural_imbalance_ising() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 i n mod-ule Underfull \hbox (badness 10000) in paragraph at lines 142--144 []\T1/pcr/m/n/10 traveling_salesperson() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod -ule Underfull \hbox (badness 10000) in paragraph at lines 144--146 []\T1/pcr/m/n/10 traveling_salesperson_qubo() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 i n mod-ule Underfull \hbox (badness 10000) in paragraph at lines 146--148 []\T1/pcr/m/n/10 treewidth_branch_and_bound() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 i n mod-ule Overfull \hbox (16.6902pt too wide) in paragraph at lines 146--148 \T1/ptm/m/it/10 dwave_networkx.algorithms.elimination_ordering\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 151--153 []\T1/pcr/m/n/10 unset_default_sampler() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod -ule Underfull \hbox (badness 10000) in paragraph at lines 156--158 []\T1/pcr/m/n/10 vertex_color() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 158--160 []\T1/pcr/m/n/10 vertex_color_qubo() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 163--165 []\T1/pcr/m/n/10 weighted_maximum_cut() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod- ule [58]) (./d-wave-systems-dwave-networkx.aux) Package rerunfilecheck Warning: File `d-wave-systems-dwave-networkx.out' has ch anged. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on d-wave-systems-dwave-networkx.pdf (62 pages, 703358 bytes). Transcript written on d-wave-systems-dwave-networkx.log. Latexmk: Index file 'd-wave-systems-dwave-networkx.idx' was written Latexmk: References changed. Latexmk: Log file says output to 'd-wave-systems-dwave-networkx.pdf' Rule 'pdflatex': File changes, etc: Changed files, or newly in use since previous run(s): 'd-wave-systems-dwave-networkx.aux' 'd-wave-systems-dwave-networkx.out' 'd-wave-systems-dwave-networkx.toc' ------------ Run number 3 of rule 'pdflatex' ------------ ------------ Running 'pdflatex -interaction=nonstopmode -recorder --jobname="d-wave-systems-dwave-networkx" "DWaveNetworkX.tex"' ------------ Latexmk: applying rule 'pdflatex'... This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./DWaveNetworkX.tex LaTeX2e <2017-04-15> Babel <3.18> and hyphenation patterns for 84 language(s) loaded. (./sphinxmanual.cls Document Class: sphinxmanual 2018/12/22 v1.8.3 Document class (Sphinx manual) (/usr/share/texlive/texmf-dist/tex/latex/base/report.cls Document Class: report 2014/09/29 v1.4h Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo))) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/ot1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/omsenc.dfu))) (/usr/share/texlive/texmf-dist/tex/latex/cmap/cmap.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def)<>) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty For additional information on amsmath, use the `?' option. (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty)) (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty (/usr/share/texlive/texmf-dist/tex/generic/babel/switch.def) (/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.def (/usr/share/texlive/texmf-dist/tex/generic/babel/txtbabel.def)))) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) (/usr/share/texlive/texmf-dist/tex/latex/fncychap/fncychap.sty) (./sphinx.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.def (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.dfu))) (/usr/share/texlive/texmf-dist/tex/latex/titlesec/titlesec.sty) (/usr/share/texlive/texmf-dist/tex/latex/tabulary/tabulary.sty (/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty)) (/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty) (/usr/share/texlive/texmf-dist/tex/latex/varwidth/varwidth.sty) (./sphinxmulticell.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty) (/usr/share/texlive/texmf-dist/tex/latex/framed/framed.sty) (/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty Style option: `fancyvrb' v2.7a, with DG/SPQR fixes, and firstline=lastline fix <2008/02/07> (tvz)) (./footnotehyper-sphinx.sty) (/usr/share/texlive/texmf-dist/tex/latex/float/float.sty) (/usr/share/texlive/texmf-dist/tex/latex/wrapfig/wrapfig.sty) (/usr/share/texlive/texmf-dist/tex/latex/parskip/parskip.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/upquote/upquote.sty) (/usr/share/texlive/texmf-dist/tex/latex/capt-of/capt-of.sty) (/usr/share/texlive/texmf-dist/tex/latex/needspace/needspace.sty) (/usr/share/texlive/texmf-dist/tex/latex/carlisle/remreset.sty) (./sphinxhighlight.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/kvsetkeys.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/infwarerr.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/etexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifluatex.sty))))) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifpdf.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifvtex.sty) (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty)) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/hypcap.sty) Writing index file d-wave-systems-dwave-networkx.idx (./d-wave-systems-dwave-networkx.aux) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1ptm.fd) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) (./d-wave-systems-dwave-networkx.out) (./d-wave-systems-dwave-networkx.out) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd)<><><><> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}] [2] (./d-wave-systems-dwave-networkx.toc) [1] [2] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) [1] [2] Chapter 1. [3] [4] Chapter 2. (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [5] [6 <./clique.png >] [7] [8] Underfull \hbox (badness 7064) in paragraph at lines 514--515 []|[][]\T1/pcr/m/sl/10 min_vertex_color[][]\T1/ptm/m/n/10 (G[, sam-pler, chro-m atic_lb, [9 <./Problem_MapColoring.png>] [10] [11] [12] Overfull \vbox (131.09991pt too high) has occurred while \output is active [13 <./Cover.png>] [14] [15] [16] [17] [18] [19] [20] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pcr.fd) [21] [22] Overfull \vbox (174.32007pt too high) has occurred while \output is active [23 <./Match.png>] [24] [25 <./MaxCut.png>] [26] Underfull \hbox (badness 10000) in paragraph at lines 2091--2092 []|[][]\T1/pcr/m/sl/10 maximum_weighted_independent_set[][]\T1/ptm/m/n/10 (G[, Underfull \hbox (badness 10000) in paragraph at lines 2096--2097 []|[][]\T1/pcr/m/sl/10 maximum_independent_set[][]\T1/ptm/m/n/10 (G[, sam-pler, la- [27] [28] Overfull \hbox (16.10236pt too wide) in paragraph at lines 2316--2317 []|[][]\T1/pcr/m/sl/10 maximum_weighted_independent_set_qubo[][]\T1/ptm/m/n/10 (G[, [29] [30] [31 <./Social.png>] [32] Underfull \hbox (badness 10000) in paragraph at lines 2597--2598 []|[][]\T1/pcr/m/sl/10 traveling_salesperson_qubo[][]\T1/ptm/m/n/10 (G[, la-gra nge, [33] [34 <./tsp.png>] [35] [36] [37] Underfull \hbox (badness 7486) in paragraph at lines 2966--2969 []\T1/pcr/b/n/10 data \T1/ptm/m/n/10 ([][]\T1/pcr/m/sl/10 bool[][] (optional, d efault True)\T1/ptm/m/n/10 ) ^^U If True, each node has a [38 <./chimera_layout_0-rightside.png>] [39] Underfull \hbox (badness 7981) in paragraph at lines 3098--3106 []\T1/pcr/b/n/10 nice_coordinates \T1/ptm/m/n/10 ([][]\T1/pcr/m/sl/10 bool[][], optional (default False)\T1/ptm/m/n/10 ) ^^U If the \T1/ptm/m/it/10 off- [40] [41] Overfull \hbox (10.66203pt too wide) in paragraph at lines 3371--3372 []|[][]\T1/pcr/m/sl/10 binary_quadratic_model_sampler[][]\T1/ptm/m/n/10 (which_ args)| Overfull \vbox (224.60953pt too high) has occurred while \output is active [42 <./find_chimera-unitcell.png>] Overfull \vbox (2.18257pt too high) detected at line 3477 [43] [44] Underfull \hbox (badness 10000) in paragraph at lines 3636--3637 []|[][]\T1/pcr/m/sl/10 pegasus_coordinates. Underfull \hbox (badness 10000) in paragraph at lines 3651--3652 []|[][]\T1/pcr/m/sl/10 pegasus_coordinates. [45] [46] [47] [48] [49] [50] [51] [52] [53] [54] Overfull \hbox (24.6225pt too wide) in paragraph at lines 4331--4332 []\T1/pcr/m/n/10 dwave_networkx.algorithms.canonicalization\T1/ptm/m/n/10 , Overfull \hbox (48.6225pt too wide) in paragraph at lines 4335--4336 []\T1/pcr/m/n/10 dwave_networkx.algorithms.elimination_ordering\T1/ptm/m/n/10 , Overfull \hbox (18.6225pt too wide) in paragraph at lines 4336--4337 []\T1/pcr/m/n/10 dwave_networkx.algorithms.independent_set\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4346--4347 []\T1/pcr/m/n/10 dwave_networkx.drawing.chimera_layout\T1/ptm/m/n/10 , [55] (./d-wave-systems-dwave-networkx.ind [56] Underfull \hbox (badness 10000) in paragraph at lines 13--15 []\T1/pcr/m/n/10 canonical_chimera_labeling() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 i n mod-ule Underfull \hbox (badness 10000) in paragraph at lines 16--18 []\T1/pcr/m/n/10 chimera_elimination_order() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (16.6902pt too wide) in paragraph at lines 16--18 \T1/ptm/m/it/10 dwave_networkx.algorithms.elimination_ordering\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 19--21 []\T1/pcr/m/n/10 chimera_layout() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 19--21 \T1/ptm/m/it/10 dwave_networkx.drawing.chimera_layout\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 25--27 []\T1/pcr/m/n/10 draw_chimera() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 25--27 \T1/ptm/m/it/10 dwave_networkx.drawing.chimera_layout\T1/ptm/m/n/10 ), Overfull \hbox (22.1225pt too wide) in paragraph at lines 28--29 []\T1/pcr/m/n/10 dwave_networkx.algorithms.canonicalization Underfull \hbox (badness 10000) in paragraph at lines 29--30 []\T1/pcr/m/n/10 dwave_networkx.algorithms.clique \T1/ptm/m/n/10 (\T1/ptm/m/it/ 10 mod- Overfull \hbox (46.1225pt too wide) in paragraph at lines 32--34 []\T1/pcr/m/n/10 dwave_networkx.algorithms.elimination_ordering Overfull \hbox (16.1225pt too wide) in paragraph at lines 34--35 []\T1/pcr/m/n/10 dwave_networkx.algorithms.independent_set Underfull \hbox (badness 10000) in paragraph at lines 35--36 []\T1/pcr/m/n/10 dwave_networkx.algorithms.markov \T1/ptm/m/n/10 (\T1/ptm/m/it/ 10 mod- Underfull \hbox (badness 10000) in paragraph at lines 38--39 []\T1/pcr/m/n/10 dwave_networkx.algorithms.social \T1/ptm/m/n/10 (\T1/ptm/m/it/ 10 mod- Underfull \hbox (badness 10000) in paragraph at lines 40--41 []\T1/pcr/m/n/10 dwave_networkx.default_sampler \T1/ptm/m/n/10 (\T1/ptm/m/it/10 mod-ule\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 41--42 []\T1/pcr/m/n/10 dwave_networkx.drawing.chimera_layout Underfull \hbox (badness 10000) in paragraph at lines 50--52 []\T1/pcr/m/n/10 elimination_order_width() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in m od-ule Overfull \hbox (16.6902pt too wide) in paragraph at lines 50--52 \T1/ptm/m/it/10 dwave_networkx.algorithms.elimination_ordering\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 55--56 []\T1/pcr/m/n/10 find_chimera_indices() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod- ule Underfull \hbox (badness 10000) in paragraph at lines 59--61 []\T1/pcr/m/n/10 get_default_sampler() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 64--66 []\T1/pcr/m/n/10 is_almost_simplicial() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod- ule Overfull \hbox (16.6902pt too wide) in paragraph at lines 64--66 \T1/ptm/m/it/10 dwave_networkx.algorithms.elimination_ordering\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 67--68 []\T1/pcr/m/n/10 is_independent_set() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 68--70 []\T1/pcr/m/n/10 is_matching() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 70--72 []\T1/pcr/m/n/10 is_maximal_matching() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 72--74 []\T1/pcr/m/n/10 is_simplicial() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (16.6902pt too wide) in paragraph at lines 72--74 \T1/ptm/m/it/10 dwave_networkx.algorithms.elimination_ordering\T1/ptm/m/n/10 ), [57] Underfull \hbox (badness 10000) in paragraph at lines 74--76 []\T1/pcr/m/n/10 is_vertex_coloring() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 76--78 []\T1/pcr/m/n/10 is_vertex_cover() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 82--83 []\T1/pcr/m/n/10 linear_to_pegasus() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 pe-ga-sus_ coordinates Underfull \hbox (badness 10000) in paragraph at lines 87--89 []\T1/pcr/m/n/10 markov_network_bqm() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 89--91 []\T1/pcr/m/n/10 max_cardinality_heuristic() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (16.6902pt too wide) in paragraph at lines 89--91 \T1/ptm/m/it/10 dwave_networkx.algorithms.elimination_ordering\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 92--94 []\T1/pcr/m/n/10 maximum_cut() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 94--95 []\T1/pcr/m/n/10 maximum_independent_set() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in m od-ule Underfull \hbox (badness 10000) in paragraph at lines 95--97 []\T1/pcr/m/n/10 maximum_weighted_independent_set() \T1/ptm/m/n/10 (\T1/ptm/m/i t/10 in Overfull \hbox (4.1225pt too wide) in paragraph at lines 97--99 []\T1/pcr/m/n/10 maximum_weighted_independent_set_qubo() Overfull \hbox (41.02017pt too wide) in paragraph at lines 97--99 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule dwave_networkx.algorithms.independen t_set\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 99--101 []\T1/pcr/m/n/10 min_fill_heuristic() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ul e Overfull \hbox (16.6902pt too wide) in paragraph at lines 99--101 \T1/ptm/m/it/10 dwave_networkx.algorithms.elimination_ordering\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 101--103 []\T1/pcr/m/n/10 min_maximal_matching() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod- ule Underfull \hbox (badness 10000) in paragraph at lines 103--105 []\T1/pcr/m/n/10 min_vertex_color() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 105--107 []\T1/pcr/m/n/10 min_vertex_color_qubo() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod -ule Underfull \hbox (badness 10000) in paragraph at lines 107--109 []\T1/pcr/m/n/10 min_vertex_cover() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 109--111 []\T1/pcr/m/n/10 min_weighted_vertex_cover() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 111--113 []\T1/pcr/m/n/10 min_width_heuristic() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-u le Overfull \hbox (16.6902pt too wide) in paragraph at lines 111--113 \T1/ptm/m/it/10 dwave_networkx.algorithms.elimination_ordering\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 113--115 []\T1/pcr/m/n/10 minor_min_width() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (16.6902pt too wide) in paragraph at lines 113--115 \T1/ptm/m/it/10 dwave_networkx.algorithms.elimination_ordering\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 119--120 []\T1/pcr/m/n/10 nice_to_pegasus() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 pe-ga-sus_co ordinates static Underfull \hbox (badness 10000) in paragraph at lines 123--125 []\T1/pcr/m/n/10 pegasus_elimination_order() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Overfull \hbox (16.6902pt too wide) in paragraph at lines 123--125 \T1/ptm/m/it/10 dwave_networkx.algorithms.elimination_ordering\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 126--127 []\T1/pcr/m/n/10 pegasus_to_linear() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 pe-ga-sus_ coordinates Underfull \hbox (badness 10000) in paragraph at lines 127--128 []\T1/pcr/m/n/10 pegasus_to_nice() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 pe-ga-sus_co ordinates static Underfull \hbox (badness 10000) in paragraph at lines 131--133 []\T1/pcr/m/n/10 sample_markov_network() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod -ule Underfull \hbox (badness 10000) in paragraph at lines 133--135 []\T1/pcr/m/n/10 set_default_sampler() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 135--137 []\T1/pcr/m/n/10 structural_imbalance() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod- ule Underfull \hbox (badness 10000) in paragraph at lines 137--139 []\T1/pcr/m/n/10 structural_imbalance_ising() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 i n mod-ule Underfull \hbox (badness 10000) in paragraph at lines 142--144 []\T1/pcr/m/n/10 traveling_salesperson() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod -ule Underfull \hbox (badness 10000) in paragraph at lines 144--146 []\T1/pcr/m/n/10 traveling_salesperson_qubo() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 i n mod-ule Underfull \hbox (badness 10000) in paragraph at lines 146--148 []\T1/pcr/m/n/10 treewidth_branch_and_bound() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 i n mod-ule Overfull \hbox (16.6902pt too wide) in paragraph at lines 146--148 \T1/ptm/m/it/10 dwave_networkx.algorithms.elimination_ordering\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 151--153 []\T1/pcr/m/n/10 unset_default_sampler() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod -ule Underfull \hbox (badness 10000) in paragraph at lines 156--158 []\T1/pcr/m/n/10 vertex_color() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 158--160 []\T1/pcr/m/n/10 vertex_color_qubo() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 163--165 []\T1/pcr/m/n/10 weighted_maximum_cut() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod- ule [58]) (./d-wave-systems-dwave-networkx.aux) ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on d-wave-systems-dwave-networkx.pdf (62 pages, 703505 bytes). Transcript written on d-wave-systems-dwave-networkx.log. Latexmk: Index file 'd-wave-systems-dwave-networkx.idx' was written Latexmk: Log file says output to 'd-wave-systems-dwave-networkx.pdf' Latexmk: All targets (d-wave-systems-dwave-networkx.pdf) are up-to-date [rtd-command-info] start-time: 2020-03-25T20:50:14.836934Z, end-time: 2020-03-25T20:50:15.156977Z, duration: 0, exit-code: 0 mv -f /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/_build/latex/d-wave-systems-dwave-networkx.pdf /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/artifacts/latest/sphinx_pdf/d-wave-systems-dwave-networkx.pdf [rtd-command-info] start-time: 2020-03-25T20:50:15.318220Z, end-time: 2020-03-25T20:50:22.910541Z, duration: 7, exit-code: 0 python sphinx-build -T -b epub -d _build/doctrees-epub -D language=en . _build/epub Running Sphinx v1.8.5 loading translations [en]... done making output directory... [autosummary] generating autosummary for: README.rst, bibliography.rst, index.rst, installation.rst, intro.rst, license.rst, reference/algorithms/canonicalization.rst, reference/algorithms/clique.rst, reference/algorithms/coloring.rst, reference/algorithms/cover.rst, ..., reference/generated/dwave_networkx.pegasus_coordinates.nice_to_linear.rst, reference/generated/dwave_networkx.pegasus_coordinates.nice_to_pegasus.rst, reference/generated/dwave_networkx.pegasus_coordinates.pegasus_to_linear.rst, reference/generated/dwave_networkx.pegasus_coordinates.pegasus_to_nice.rst, reference/generated/dwave_networkx.pegasus_graph.rst, reference/generated/dwave_networkx.utils.decorators.binary_quadratic_model_sampler.rst, reference/generators.rst, reference/index.rst, reference/utilities.rst, reference/utilities/index.rst loading intersphinx inventory from https://docs.python.org/3/objects.inv... loading intersphinx inventory from https://docs.ocean.dwavesys.com/en/latest/objects.inv... loading intersphinx inventory from https://docs.ocean.dwavesys.com/projects/qbsolv/en/latest/objects.inv... loading intersphinx inventory from https://docs.dwavesys.com/docs/latest/objects.inv... loading intersphinx inventory from https://networkx.github.io/documentation/stable/objects.inv... building [mo]: targets for 0 po files that are out of date building [epub]: targets for 79 source files that are out of date updating environment: 79 added, 0 changed, 0 removed reading sources... [ 1%] README reading sources... [ 2%] bibliography reading sources... [ 3%] index reading sources... [ 5%] installation reading sources... [ 6%] intro reading sources... [ 7%] license reading sources... [ 8%] reference/algorithms/canonicalization reading sources... [ 10%] reference/algorithms/clique reading sources... [ 11%] reference/algorithms/coloring reading sources... [ 12%] reference/algorithms/cover reading sources... [ 13%] reference/algorithms/elimination_ordering reading sources... [ 15%] reference/algorithms/generated/dwave_networkx.algorithms.coloring.is_vertex_coloring reading sources... [ 16%] reference/algorithms/generated/dwave_networkx.algorithms.coloring.min_vertex_color reading sources... [ 17%] reference/algorithms/generated/dwave_networkx.algorithms.coloring.min_vertex_color_qubo reading sources... [ 18%] reference/algorithms/generated/dwave_networkx.algorithms.coloring.vertex_color reading sources... [ 20%] reference/algorithms/generated/dwave_networkx.algorithms.coloring.vertex_color_qubo reading sources... [ 21%] reference/algorithms/generated/dwave_networkx.algorithms.cover.is_vertex_cover reading sources... [ 22%] reference/algorithms/generated/dwave_networkx.algorithms.cover.min_vertex_cover reading sources... [ 24%] reference/algorithms/generated/dwave_networkx.algorithms.cover.min_weighted_vertex_cover reading sources... [ 25%] reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.chimera_elimination_order reading sources... [ 26%] reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.elimination_order_width reading sources... [ 27%] reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.is_almost_simplicial reading sources... [ 29%] reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.is_simplicial reading sources... [ 30%] reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.max_cardinality_heuristic reading sources... [ 31%] reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.min_fill_heuristic reading sources... [ 32%] reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.min_width_heuristic reading sources... [ 34%] reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.minor_min_width reading sources... [ 35%] reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.pegasus_elimination_order reading sources... [ 36%] reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.treewidth_branch_and_bound reading sources... [ 37%] reference/algorithms/generated/dwave_networkx.algorithms.independent_set.maximum_weighted_independent_set_qubo reading sources... [ 39%] reference/algorithms/generated/dwave_networkx.algorithms.markov.markov_network_bqm reading sources... [ 40%] reference/algorithms/generated/dwave_networkx.algorithms.markov.sample_markov_network reading sources... [ 41%] reference/algorithms/generated/dwave_networkx.algorithms.matching.is_matching reading sources... [ 43%] reference/algorithms/generated/dwave_networkx.algorithms.matching.is_maximal_matching reading sources... [ 44%] reference/algorithms/generated/dwave_networkx.algorithms.matching.min_maximal_matching reading sources... [ 45%] reference/algorithms/generated/dwave_networkx.algorithms.max_cut.maximum_cut reading sources... [ 46%] reference/algorithms/generated/dwave_networkx.algorithms.max_cut.weighted_maximum_cut reading sources... [ 48%] reference/algorithms/generated/dwave_networkx.algorithms.social.structural_imbalance reading sources... [ 49%] reference/algorithms/generated/dwave_networkx.algorithms.social.structural_imbalance_ising reading sources... [ 50%] reference/algorithms/generated/dwave_networkx.algorithms.tsp.traveling_salesperson reading sources... [ 51%] reference/algorithms/generated/dwave_networkx.algorithms.tsp.traveling_salesperson_qubo reading sources... [ 53%] reference/algorithms/generated/dwave_networkx.canonical_chimera_labeling reading sources... [ 54%] reference/algorithms/generated/dwave_networkx.clique_number reading sources... [ 55%] reference/algorithms/generated/dwave_networkx.is_clique reading sources... [ 56%] reference/algorithms/generated/dwave_networkx.is_independent_set reading sources... [ 58%] reference/algorithms/generated/dwave_networkx.maximum_clique reading sources... [ 59%] reference/algorithms/generated/dwave_networkx.maximum_independent_set reading sources... [ 60%] reference/algorithms/generated/dwave_networkx.maximum_weighted_independent_set reading sources... [ 62%] reference/algorithms/index reading sources... [ 63%] reference/algorithms/markov reading sources... [ 64%] reference/algorithms/matching reading sources... [ 65%] reference/algorithms/max_cut reading sources... [ 67%] reference/algorithms/packing reading sources... [ 68%] reference/algorithms/social reading sources... [ 69%] reference/algorithms/tsp reading sources... [ 70%] reference/default_sampler reading sources... [ 72%] reference/drawing reading sources... [ 73%] reference/generated/dwave_networkx.chimera_graph reading sources... [ 74%] reference/generated/dwave_networkx.default_sampler.get_default_sampler reading sources... [ 75%] reference/generated/dwave_networkx.default_sampler.set_default_sampler reading sources... [ 77%] reference/generated/dwave_networkx.default_sampler.unset_default_sampler reading sources... [ 78%] reference/generated/dwave_networkx.drawing.chimera_layout.chimera_layout reading sources... [ 79%] reference/generated/dwave_networkx.drawing.chimera_layout.draw_chimera reading sources... [ 81%] reference/generated/dwave_networkx.exceptions.DWaveNetworkXException reading sources... [ 82%] reference/generated/dwave_networkx.exceptions.DWaveNetworkXMissingSampler reading sources... [ 83%] reference/generated/dwave_networkx.find_chimera_indices reading sources... [ 84%] reference/generated/dwave_networkx.markov_network reading sources... [ 86%] reference/generated/dwave_networkx.pegasus_coordinates.linear_to_nice reading sources... [ 87%] reference/generated/dwave_networkx.pegasus_coordinates.linear_to_pegasus reading sources... [ 88%] reference/generated/dwave_networkx.pegasus_coordinates.nice_to_linear reading sources... [ 89%] reference/generated/dwave_networkx.pegasus_coordinates.nice_to_pegasus reading sources... [ 91%] reference/generated/dwave_networkx.pegasus_coordinates.pegasus_to_linear reading sources... [ 92%] reference/generated/dwave_networkx.pegasus_coordinates.pegasus_to_nice reading sources... [ 93%] reference/generated/dwave_networkx.pegasus_graph reading sources... [ 94%] reference/generated/dwave_networkx.utils.decorators.binary_quadratic_model_sampler reading sources... [ 96%] reference/generators reading sources... [ 97%] reference/index reading sources... [ 98%] reference/utilities reading sources... [100%] reference/utilities/index /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/reference/algorithms/elimination_ordering.rst:36: WARNING: duplicate citation GD, other instance in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/bibliography.rst /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/dwave_networkx/algorithms/coloring.py:docstring of dwave_networkx.algorithms.coloring.min_vertex_color:35: WARNING: duplicate citation DWMP, other instance in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/bibliography.rst /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/dwave_networkx/algorithms/coloring.py:docstring of dwave_networkx.algorithms.coloring.vertex_color:31: WARNING: duplicate citation DWMP, other instance in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/reference/algorithms/generated/dwave_networkx.algorithms.coloring.min_vertex_color.rst /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/dwave_networkx/algorithms/cover.py:docstring of dwave_networkx.algorithms.cover.min_vertex_cover:56: WARNING: duplicate citation AL, other instance in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/bibliography.rst /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/dwave_networkx/algorithms/elimination_ordering.py:docstring of dwave_networkx.algorithms.elimination_ordering.treewidth_branch_and_bound:30: WARNING: duplicate citation GD, other instance in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/reference/algorithms/elimination_ordering.rst /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/dwave_networkx/algorithms/matching.py:docstring of dwave_networkx.algorithms.matching.min_maximal_matching:49: WARNING: duplicate citation AL, other instance in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/reference/algorithms/generated/dwave_networkx.algorithms.cover.min_vertex_cover.rst /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/dwave_networkx/algorithms/social.py:docstring of dwave_networkx.algorithms.social.structural_imbalance:62: WARNING: duplicate citation FIA, other instance in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/bibliography.rst /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/dwave_networkx/algorithms/clique.py:docstring of dwave_networkx.maximum_clique:47: WARNING: duplicate citation AL, other instance in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/reference/algorithms/generated/dwave_networkx.algorithms.matching.min_maximal_matching.rst /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/dwave_networkx/algorithms/independent_set.py:docstring of dwave_networkx.maximum_independent_set:54: WARNING: duplicate citation AL, other instance in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/reference/algorithms/generated/dwave_networkx.maximum_clique.rst /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/dwave_networkx/algorithms/independent_set.py:docstring of dwave_networkx.maximum_weighted_independent_set:46: WARNING: duplicate citation AL, other instance in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/reference/algorithms/generated/dwave_networkx.maximum_independent_set.rst /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/reference/algorithms/packing.rst:14: WARNING: duplicate label cover, other instance in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/reference/algorithms/cover.rst looking for now-outdated files... none found pickling environment... done checking consistency... /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/bibliography.rst:4: WARNING: Citation [NX] is not referenced. /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/reference/algorithms/generated/dwave_networkx.algorithms.social.structural_imbalance.rst:62: WARNING: Citation [FIA] is not referenced. done preparing documents... done writing output... [ 1%] README writing output... [ 2%] bibliography writing output... [ 3%] index writing output... [ 5%] installation writing output... [ 6%] intro writing output... [ 7%] license writing output... [ 8%] reference/algorithms/canonicalization writing output... [ 10%] reference/algorithms/clique writing output... [ 11%] reference/algorithms/coloring writing output... [ 12%] reference/algorithms/cover writing output... [ 13%] reference/algorithms/elimination_ordering writing output... [ 15%] reference/algorithms/generated/dwave_networkx.algorithms.coloring.is_vertex_coloring writing output... [ 16%] reference/algorithms/generated/dwave_networkx.algorithms.coloring.min_vertex_color writing output... [ 17%] reference/algorithms/generated/dwave_networkx.algorithms.coloring.min_vertex_color_qubo writing output... [ 18%] reference/algorithms/generated/dwave_networkx.algorithms.coloring.vertex_color writing output... [ 20%] reference/algorithms/generated/dwave_networkx.algorithms.coloring.vertex_color_qubo writing output... [ 21%] reference/algorithms/generated/dwave_networkx.algorithms.cover.is_vertex_cover writing output... [ 22%] reference/algorithms/generated/dwave_networkx.algorithms.cover.min_vertex_cover writing output... [ 24%] reference/algorithms/generated/dwave_networkx.algorithms.cover.min_weighted_vertex_cover writing output... [ 25%] reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.chimera_elimination_order writing output... [ 26%] reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.elimination_order_width writing output... [ 27%] reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.is_almost_simplicial writing output... [ 29%] reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.is_simplicial writing output... [ 30%] reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.max_cardinality_heuristic writing output... [ 31%] reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.min_fill_heuristic writing output... [ 32%] reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.min_width_heuristic writing output... [ 34%] reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.minor_min_width writing output... [ 35%] reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.pegasus_elimination_order writing output... [ 36%] reference/algorithms/generated/dwave_networkx.algorithms.elimination_ordering.treewidth_branch_and_bound writing output... [ 37%] reference/algorithms/generated/dwave_networkx.algorithms.independent_set.maximum_weighted_independent_set_qubo writing output... [ 39%] reference/algorithms/generated/dwave_networkx.algorithms.markov.markov_network_bqm writing output... [ 40%] reference/algorithms/generated/dwave_networkx.algorithms.markov.sample_markov_network writing output... [ 41%] reference/algorithms/generated/dwave_networkx.algorithms.matching.is_matching writing output... [ 43%] reference/algorithms/generated/dwave_networkx.algorithms.matching.is_maximal_matching writing output... [ 44%] reference/algorithms/generated/dwave_networkx.algorithms.matching.min_maximal_matching writing output... [ 45%] reference/algorithms/generated/dwave_networkx.algorithms.max_cut.maximum_cut writing output... [ 46%] reference/algorithms/generated/dwave_networkx.algorithms.max_cut.weighted_maximum_cut writing output... [ 48%] reference/algorithms/generated/dwave_networkx.algorithms.social.structural_imbalance writing output... [ 49%] reference/algorithms/generated/dwave_networkx.algorithms.social.structural_imbalance_ising writing output... [ 50%] reference/algorithms/generated/dwave_networkx.algorithms.tsp.traveling_salesperson writing output... [ 51%] reference/algorithms/generated/dwave_networkx.algorithms.tsp.traveling_salesperson_qubo writing output... [ 53%] reference/algorithms/generated/dwave_networkx.canonical_chimera_labeling writing output... [ 54%] reference/algorithms/generated/dwave_networkx.clique_number writing output... [ 55%] reference/algorithms/generated/dwave_networkx.is_clique writing output... [ 56%] reference/algorithms/generated/dwave_networkx.is_independent_set writing output... [ 58%] reference/algorithms/generated/dwave_networkx.maximum_clique writing output... [ 59%] reference/algorithms/generated/dwave_networkx.maximum_independent_set writing output... [ 60%] reference/algorithms/generated/dwave_networkx.maximum_weighted_independent_set writing output... [ 62%] reference/algorithms/index writing output... [ 63%] reference/algorithms/markov writing output... [ 64%] reference/algorithms/matching writing output... [ 65%] reference/algorithms/max_cut writing output... [ 67%] reference/algorithms/packing writing output... [ 68%] reference/algorithms/social writing output... [ 69%] reference/algorithms/tsp writing output... [ 70%] reference/default_sampler writing output... [ 72%] reference/drawing writing output... [ 73%] reference/generated/dwave_networkx.chimera_graph writing output... [ 74%] reference/generated/dwave_networkx.default_sampler.get_default_sampler writing output... [ 75%] reference/generated/dwave_networkx.default_sampler.set_default_sampler writing output... [ 77%] reference/generated/dwave_networkx.default_sampler.unset_default_sampler writing output... [ 78%] reference/generated/dwave_networkx.drawing.chimera_layout.chimera_layout writing output... [ 79%] reference/generated/dwave_networkx.drawing.chimera_layout.draw_chimera writing output... [ 81%] reference/generated/dwave_networkx.exceptions.DWaveNetworkXException writing output... [ 82%] reference/generated/dwave_networkx.exceptions.DWaveNetworkXMissingSampler writing output... [ 83%] reference/generated/dwave_networkx.find_chimera_indices writing output... [ 84%] reference/generated/dwave_networkx.markov_network writing output... [ 86%] reference/generated/dwave_networkx.pegasus_coordinates.linear_to_nice writing output... [ 87%] reference/generated/dwave_networkx.pegasus_coordinates.linear_to_pegasus writing output... [ 88%] reference/generated/dwave_networkx.pegasus_coordinates.nice_to_linear writing output... [ 89%] reference/generated/dwave_networkx.pegasus_coordinates.nice_to_pegasus writing output... [ 91%] reference/generated/dwave_networkx.pegasus_coordinates.pegasus_to_linear writing output... [ 92%] reference/generated/dwave_networkx.pegasus_coordinates.pegasus_to_nice writing output... [ 93%] reference/generated/dwave_networkx.pegasus_graph writing output... [ 94%] reference/generated/dwave_networkx.utils.decorators.binary_quadratic_model_sampler writing output... [ 96%] reference/generators writing output... [ 97%] reference/index writing output... [ 98%] reference/utilities writing output... [100%] reference/utilities/index generating indices... genindex py-modindex writing additional pages... copying images... [ 7%] reference/algorithms/../../_images/Social.png copying images... [ 15%] reference/../_images/chimera_layout_0-rightside.png copying images... [ 23%] https://circleci.com/gh/dwavesystems/dwave_networkx.svg?style=svg copying images... [ 30%] reference/algorithms/../../_images/clique.png copying images... [ 38%] reference/algorithms/../../_images/Cover.png copying images... [ 46%] reference/algorithms/../../_images/tsp.png copying images... [ 53%] reference/algorithms/../../_images/Problem_MapColoring.png copying images... [ 61%] reference/algorithms/../../_images/Match.png copying images... [ 69%] reference/../_images/find_chimera-unitcell.png copying images... [ 76%] https://codecov.io/gh/dwavesystems/dwave_networkx/branch/master/graph/badge.svg copying images... [ 84%] https://readthedocs.com/projects/d-wave-systems-dwave-networkx/badge/?version=latest copying images... [ 92%] https://img.shields.io/pypi/v/dwave-networkx.svg copying images... [100%] reference/algorithms/../../_images/MaxCut.png copying static files... done copying extra files... done writing mimetype file... writing META-INF/container.xml file... writing content.opf file... writing nav.xhtml file... writing toc.ncx file... writing D-WaveNetworkX.epub file... build succeeded, 13 warnings. The ePub file is in _build/epub. [rtd-command-info] start-time: 2020-03-25T20:50:23.126137Z, end-time: 2020-03-25T20:50:23.454857Z, duration: 0, exit-code: 0 mv -f /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/checkouts/latest/docs/_build/epub/D-WaveNetworkX.epub /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-networkx/artifacts/latest/sphinx_epub/d-wave-systems-dwave-networkx.epub