Read the Docs build information Build id: 307129 Project: tiledb-inc-tiledb-py Version: stable Commit: de2aff00b97498420199a9d16c8375df70e94780 Date: 2020-03-25T20:32:12.895175Z State: finished Success: True [rtd-command-info] start-time: 2020-03-25T20:32:15.778066Z, end-time: 2020-03-25T20:32:17.246462Z, duration: 1, exit-code: 0 git clone --no-single-branch --depth 50 https://github.com/TileDB-Inc/TileDB-Py.git . Cloning into '.'... [rtd-command-info] start-time: 2020-03-25T20:32:17.650683Z, end-time: 2020-03-25T20:32:17.964321Z, duration: 0, exit-code: 0 git checkout --force de2aff00b97498420199a9d16c8375df70e94780 Note: checking out 'de2aff00b97498420199a9d16c8375df70e94780'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at de2aff0 Add error check for libtiledb build validity in setup.py [rtd-command-info] start-time: 2020-03-25T20:32:18.123181Z, end-time: 2020-03-25T20:32:18.430552Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2020-03-25T20:32:19.812861Z, end-time: 2020-03-25T20:32:24.955653Z, duration: 5, exit-code: 0 python3.7 -mvirtualenv Using base prefix '/home/docs/.pyenv/versions/3.7.3' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2020-03-25T20:32:25.119365Z, end-time: 2020-03-25T20:32:26.115303Z, duration: 0, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip Requirement already up-to-date: pip in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (20.0.2) [rtd-command-info] start-time: 2020-03-25T20:32:26.268591Z, end-time: 2020-03-25T20:32:37.850851Z, duration: 11, exit-code: 0 python -m pip install --upgrade --no-cache-dir Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1 Collecting Pygments==2.3.1 Downloading Pygments-2.3.1-py2.py3-none-any.whl (849 kB) Collecting setuptools==41.0.1 Downloading setuptools-41.0.1-py2.py3-none-any.whl (575 kB) Collecting docutils==0.14 Downloading docutils-0.14-py3-none-any.whl (543 kB) Collecting mock==1.0.1 Downloading mock-1.0.1.tar.gz (818 kB) Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.5-py2.py3-none-any.whl (3.1 MB) Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) Collecting readthedocs-sphinx-ext<1.1 Downloading readthedocs_sphinx_ext-1.0.1-py2.py3-none-any.whl (14 kB) Collecting future Downloading future-0.18.2.tar.gz (829 kB) Collecting requests>=2.0.0 Downloading requests-2.23.0-py2.py3-none-any.whl (58 kB) Collecting babel!=2.0,>=1.3 Downloading Babel-2.8.0-py2.py3-none-any.whl (8.6 MB) Collecting packaging Downloading packaging-20.3-py2.py3-none-any.whl (37 kB) Collecting imagesize Downloading imagesize-1.2.0-py2.py3-none-any.whl (4.8 kB) Collecting six>=1.5 Downloading six-1.14.0-py2.py3-none-any.whl (10 kB) Collecting Jinja2>=2.3 Downloading Jinja2-2.11.1-py2.py3-none-any.whl (126 kB) Collecting sphinxcontrib-websupport Downloading sphinxcontrib_websupport-1.2.1-py2.py3-none-any.whl (39 kB) Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.0.0-py2.py3-none-any.whl (97 kB) Collecting certifi>=2017.4.17 Downloading certifi-2019.11.28-py2.py3-none-any.whl (156 kB) Collecting urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 Downloading urllib3-1.25.8-py2.py3-none-any.whl (125 kB) Collecting chardet<4,>=3.0.2 Downloading chardet-3.0.4-py2.py3-none-any.whl (133 kB) Collecting idna<3,>=2.5 Downloading idna-2.9-py2.py3-none-any.whl (58 kB) Collecting pytz>=2015.7 Downloading pytz-2019.3-py2.py3-none-any.whl (509 kB) Collecting pyparsing>=2.0.2 Downloading pyparsing-2.4.6-py2.py3-none-any.whl (67 kB) Collecting MarkupSafe>=0.23 Downloading MarkupSafe-1.1.1-cp37-cp37m-manylinux1_x86_64.whl (27 kB) Building wheels for collected packages: mock, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23754 sha256=1c1e63c99a04b010106f7cb3876798cf4687ca4a4ba6ba8d2f77ed5c9250221a Stored in directory: /tmp/pip-ephem-wheel-cache-1flabafu/wheels/16/03/37/f0a64ab894c9102906f192db1a4071b7592292ad661563c69b Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491058 sha256=efffe0bb129f0828cc285cf3603e7e29972b1c3965d60b47406e95657d1e2cfc Stored in directory: /tmp/pip-ephem-wheel-cache-1flabafu/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0 Successfully built mock future Installing collected packages: Pygments, setuptools, docutils, mock, pillow, alabaster, future, commonmark, certifi, urllib3, chardet, idna, requests, pytz, babel, pyparsing, six, packaging, imagesize, MarkupSafe, Jinja2, sphinxcontrib-websupport, snowballstemmer, sphinx, recommonmark, sphinx-rtd-theme, readthedocs-sphinx-ext Attempting uninstall: setuptools Found existing installation: setuptools 46.1.3 Uninstalling setuptools-46.1.3: Successfully uninstalled setuptools-46.1.3 Successfully installed Jinja2-2.11.1 MarkupSafe-1.1.1 Pygments-2.3.1 alabaster-0.7.12 babel-2.8.0 certifi-2019.11.28 chardet-3.0.4 commonmark-0.8.1 docutils-0.14 future-0.18.2 idna-2.9 imagesize-1.2.0 mock-1.0.1 packaging-20.3 pillow-5.4.1 pyparsing-2.4.6 pytz-2019.3 readthedocs-sphinx-ext-1.0.1 recommonmark-0.5.0 requests-2.23.0 setuptools-41.0.1 six-1.14.0 snowballstemmer-2.0.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-websupport-1.2.1 urllib3-1.25.8 [rtd-command-info] start-time: 2020-03-25T20:32:38.013623Z, end-time: 2020-03-25T20:32:50.375356Z, duration: 12, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r requirements.txt Collecting cmake>=3.11.0 Downloading cmake-3.16.3-py3-none-manylinux2010_x86_64.whl (17.0 MB) Collecting cython>=0.29 Downloading Cython-0.29.16-cp37-cp37m-manylinux1_x86_64.whl (2.1 MB) Collecting numpy==1.16.* Downloading numpy-1.16.6-cp37-cp37m-manylinux1_x86_64.whl (17.3 MB) Requirement already satisfied: setuptools>=18.0.1 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 4)) (41.0.1) Collecting setuptools-scm>=1.5.4 Downloading setuptools_scm-3.5.0-py2.py3-none-any.whl (26 kB) Requirement already satisfied: wheel>=0.30 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 6)) (0.34.2) Collecting psutil Downloading psutil-5.7.0.tar.gz (449 kB) Building wheels for collected packages: psutil Building wheel for psutil (setup.py): started Building wheel for psutil (setup.py): finished with status 'done' Created wheel for psutil: filename=psutil-5.7.0-cp37-cp37m-linux_x86_64.whl size=276465 sha256=6c6183188d1e9472fc5e34742b19633d1acaf0318224aa70ea1b75f12badc89c Stored in directory: /tmp/pip-ephem-wheel-cache-t73qzjdu/wheels/b6/e7/50/aee9cc966163d74430f13f208171dee22f11efa4a4a826661c Successfully built psutil Installing collected packages: cmake, cython, numpy, setuptools-scm, psutil Successfully installed cmake-3.16.3 cython-0.29.16 numpy-1.16.6 psutil-5.7.0 setuptools-scm-3.5.0 [rtd-command-info] start-time: 2020-03-25T20:32:50.527745Z, end-time: 2020-03-25T21:32:22.387233Z, duration: 3571, exit-code: 137 python ./setup.py install --force libtiledb_exists checking 'library_dirs': [] libtiledb_exists found: 'None' running install running bdist_egg GNU Make 4.1 Built for x86_64-pc-linux-gnu Copyright (C) 1988-2014 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. -- The C compiler identification is GNU 7.4.0 -- The CXX compiler identification is GNU 7.4.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Starting TileDB superbuild. -- Found Bzip2: /usr/lib/x86_64-linux-gnu/libbz2.so -- Could NOT find LZ4 (missing: LZ4_LIBRARIES LZ4_INCLUDE_DIR) -- Adding LZ4 as an external project -- Could NOT find Spdlog (missing: SPDLOG_INCLUDE_DIR) -- Adding Spdlog as an external project -- Found Zlib: /usr/lib/x86_64-linux-gnu/libz.so -- Could NOT find Zstd (missing: ZSTD_LIBRARIES ZSTD_INCLUDE_DIR) -- Adding Zstd as an external project -- Found OpenSSL: /usr/lib/x86_64-linux-gnu/libssl.so -- OpenSSL crypto: /usr/lib/x86_64-linux-gnu/libcrypto.so -- root: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/install;/usr/local/opt/openssl -- Could NOT find CURL (missing: CURL_LIBRARY CURL_INCLUDE_DIR) -- Could NOT find Curl (missing: CURL_LIBRARIES CURL_INCLUDE_DIR) -- Adding Curl as an external project CMake Warning at cmake/Modules/FindCurl_EP.cmake:106 (message): TileDB FindOpenSSL_EP did not set TILEDB_OPENSSL_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) CMake Warning at cmake/Modules/FindCurl_EP.cmake:118 (message): TileDB FindZlib_EP did not set TILEDB_ZLIB_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) -- Could NOT find AWSSDK -- Adding AWSSDK as an external project -- Could NOT find TBB (missing: TBB_LIBRARIES TBB_INCLUDE_DIR) -- Adding TBB as an external project -- Not found clang-tidy -- Not found clang-format -- Found Doxygen: /usr/bin/doxygen (found version "1.8.13") found components: doxygen dot -- Install prefix is /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/dist -- Configuring done -- Generating done -- Build files have been written to: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build Scanning dependencies of target ep_curl [ 1%] Creating directories for 'ep_curl' [ 3%] Performing download step (download, verify and extract) for 'ep_curl' -- ep_curl download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-download-*.log [ 5%] No patch step for 'ep_curl' [ 7%] No update step for 'ep_curl' [ 8%] Performing configure step for 'ep_curl' -- ep_curl configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-configure-*.log [ 10%] Performing build step for 'ep_curl' -- ep_curl build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-build-*.log [ 12%] Performing install step for 'ep_curl' -- ep_curl install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-install-*.log [ 14%] Completed 'ep_curl' [ 14%] Built target ep_curl Scanning dependencies of target ep_awssdk [ 16%] Creating directories for 'ep_awssdk' [ 17%] Performing download step (download, verify and extract) for 'ep_awssdk' -- ep_awssdk download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-download-*.log [ 19%] No patch step for 'ep_awssdk' [ 21%] No update step for 'ep_awssdk' [ 23%] Performing configure step for 'ep_awssdk' -- ep_awssdk configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-configure-*.log [ 25%] Performing build step for 'ep_awssdk' Command killed due to excessive memory consumption [rtd-command-info] start-time: 2020-03-25T21:37:11.340159Z, end-time: 2020-03-25T21:37:12.598344Z, duration: 1, exit-code: 0 git clone --no-single-branch --depth 50 https://github.com/TileDB-Inc/TileDB-Py.git . Cloning into '.'... [rtd-command-info] start-time: 2020-03-25T21:37:13.068895Z, end-time: 2020-03-25T21:37:13.372490Z, duration: 0, exit-code: 0 git checkout --force de2aff00b97498420199a9d16c8375df70e94780 Note: checking out 'de2aff00b97498420199a9d16c8375df70e94780'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at de2aff0 Add error check for libtiledb build validity in setup.py [rtd-command-info] start-time: 2020-03-25T21:37:13.591834Z, end-time: 2020-03-25T21:37:13.879869Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2020-03-25T21:37:15.313875Z, end-time: 2020-03-25T21:37:19.720392Z, duration: 4, exit-code: 0 python3.7 -mvirtualenv Using base prefix '/home/docs/.pyenv/versions/3.7.3' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2020-03-25T21:37:19.903746Z, end-time: 2020-03-25T21:37:20.841115Z, duration: 0, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip Requirement already up-to-date: pip in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (20.0.2) [rtd-command-info] start-time: 2020-03-25T21:37:21.258506Z, end-time: 2020-03-25T21:37:32.871413Z, duration: 11, exit-code: 0 python -m pip install --upgrade --no-cache-dir Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1 Collecting Pygments==2.3.1 Downloading Pygments-2.3.1-py2.py3-none-any.whl (849 kB) Collecting setuptools==41.0.1 Downloading setuptools-41.0.1-py2.py3-none-any.whl (575 kB) Collecting docutils==0.14 Downloading docutils-0.14-py3-none-any.whl (543 kB) Collecting mock==1.0.1 Downloading mock-1.0.1.tar.gz (818 kB) Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.5-py2.py3-none-any.whl (3.1 MB) Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) Collecting readthedocs-sphinx-ext<1.1 Downloading readthedocs_sphinx_ext-1.0.1-py2.py3-none-any.whl (14 kB) Collecting future Downloading future-0.18.2.tar.gz (829 kB) Collecting Jinja2>=2.3 Downloading Jinja2-2.11.1-py2.py3-none-any.whl (126 kB) Collecting babel!=2.0,>=1.3 Downloading Babel-2.8.0-py2.py3-none-any.whl (8.6 MB) Collecting imagesize Downloading imagesize-1.2.0-py2.py3-none-any.whl (4.8 kB) Collecting requests>=2.0.0 Downloading requests-2.23.0-py2.py3-none-any.whl (58 kB) Collecting six>=1.5 Downloading six-1.14.0-py2.py3-none-any.whl (10 kB) Collecting packaging Downloading packaging-20.3-py2.py3-none-any.whl (37 kB) Collecting sphinxcontrib-websupport Downloading sphinxcontrib_websupport-1.2.1-py2.py3-none-any.whl (39 kB) Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.0.0-py2.py3-none-any.whl (97 kB) Collecting MarkupSafe>=0.23 Downloading MarkupSafe-1.1.1-cp37-cp37m-manylinux1_x86_64.whl (27 kB) Collecting pytz>=2015.7 Downloading pytz-2019.3-py2.py3-none-any.whl (509 kB) Collecting chardet<4,>=3.0.2 Downloading chardet-3.0.4-py2.py3-none-any.whl (133 kB) Collecting certifi>=2017.4.17 Downloading certifi-2019.11.28-py2.py3-none-any.whl (156 kB) Collecting idna<3,>=2.5 Downloading idna-2.9-py2.py3-none-any.whl (58 kB) Collecting urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 Downloading urllib3-1.25.8-py2.py3-none-any.whl (125 kB) Collecting pyparsing>=2.0.2 Downloading pyparsing-2.4.6-py2.py3-none-any.whl (67 kB) Building wheels for collected packages: mock, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23754 sha256=57e5bb0910f10d23d03edc7ef49fa7fba378f2257dcd4e074468b3a050776a6f Stored in directory: /tmp/pip-ephem-wheel-cache-xpnckvqs/wheels/16/03/37/f0a64ab894c9102906f192db1a4071b7592292ad661563c69b Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491058 sha256=9bb8004c1da768029a65b323eac86d2fd082eff167bc582591764e94d6ae3b22 Stored in directory: /tmp/pip-ephem-wheel-cache-xpnckvqs/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0 Successfully built mock future Installing collected packages: Pygments, setuptools, docutils, mock, pillow, alabaster, future, commonmark, MarkupSafe, Jinja2, pytz, babel, imagesize, chardet, certifi, idna, urllib3, requests, six, pyparsing, packaging, sphinxcontrib-websupport, snowballstemmer, sphinx, recommonmark, sphinx-rtd-theme, readthedocs-sphinx-ext Attempting uninstall: setuptools Found existing installation: setuptools 46.1.3 Uninstalling setuptools-46.1.3: Successfully uninstalled setuptools-46.1.3 Successfully installed Jinja2-2.11.1 MarkupSafe-1.1.1 Pygments-2.3.1 alabaster-0.7.12 babel-2.8.0 certifi-2019.11.28 chardet-3.0.4 commonmark-0.8.1 docutils-0.14 future-0.18.2 idna-2.9 imagesize-1.2.0 mock-1.0.1 packaging-20.3 pillow-5.4.1 pyparsing-2.4.6 pytz-2019.3 readthedocs-sphinx-ext-1.0.1 recommonmark-0.5.0 requests-2.23.0 setuptools-41.0.1 six-1.14.0 snowballstemmer-2.0.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-websupport-1.2.1 urllib3-1.25.8 [rtd-command-info] start-time: 2020-03-25T21:37:33.030108Z, end-time: 2020-03-25T21:37:44.772919Z, duration: 11, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r requirements.txt Collecting cmake>=3.11.0 Downloading cmake-3.16.3-py3-none-manylinux2010_x86_64.whl (17.0 MB) Collecting cython>=0.29 Downloading Cython-0.29.16-cp37-cp37m-manylinux1_x86_64.whl (2.1 MB) Collecting numpy==1.16.* Downloading numpy-1.16.6-cp37-cp37m-manylinux1_x86_64.whl (17.3 MB) Requirement already satisfied: setuptools>=18.0.1 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 4)) (41.0.1) Collecting setuptools-scm>=1.5.4 Downloading setuptools_scm-3.5.0-py2.py3-none-any.whl (26 kB) Requirement already satisfied: wheel>=0.30 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 6)) (0.34.2) Collecting psutil Downloading psutil-5.7.0.tar.gz (449 kB) Building wheels for collected packages: psutil Building wheel for psutil (setup.py): started Building wheel for psutil (setup.py): finished with status 'done' Created wheel for psutil: filename=psutil-5.7.0-cp37-cp37m-linux_x86_64.whl size=276444 sha256=d3107a10b59011f01dac052e9767331654471ef37ff3c61e6cff7f8a911321e2 Stored in directory: /tmp/pip-ephem-wheel-cache-sapnabdr/wheels/b6/e7/50/aee9cc966163d74430f13f208171dee22f11efa4a4a826661c Successfully built psutil Installing collected packages: cmake, cython, numpy, setuptools-scm, psutil Successfully installed cmake-3.16.3 cython-0.29.16 numpy-1.16.6 psutil-5.7.0 setuptools-scm-3.5.0 [rtd-command-info] start-time: 2020-03-25T21:37:44.965180Z, end-time: 2020-03-25T22:37:16.736460Z, duration: 3571, exit-code: 137 python ./setup.py install --force libtiledb_exists checking 'library_dirs': [] libtiledb_exists found: 'None' running install running bdist_egg GNU Make 4.1 Built for x86_64-pc-linux-gnu Copyright (C) 1988-2014 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. -- The C compiler identification is GNU 7.4.0 -- The CXX compiler identification is GNU 7.4.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Starting TileDB superbuild. -- Found Bzip2: /usr/lib/x86_64-linux-gnu/libbz2.so -- Could NOT find LZ4 (missing: LZ4_LIBRARIES LZ4_INCLUDE_DIR) -- Adding LZ4 as an external project -- Could NOT find Spdlog (missing: SPDLOG_INCLUDE_DIR) -- Adding Spdlog as an external project -- Found Zlib: /usr/lib/x86_64-linux-gnu/libz.so -- Could NOT find Zstd (missing: ZSTD_LIBRARIES ZSTD_INCLUDE_DIR) -- Adding Zstd as an external project -- Found OpenSSL: /usr/lib/x86_64-linux-gnu/libssl.so -- OpenSSL crypto: /usr/lib/x86_64-linux-gnu/libcrypto.so -- root: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/install;/usr/local/opt/openssl -- Could NOT find CURL (missing: CURL_LIBRARY CURL_INCLUDE_DIR) -- Could NOT find Curl (missing: CURL_LIBRARIES CURL_INCLUDE_DIR) -- Adding Curl as an external project CMake Warning at cmake/Modules/FindCurl_EP.cmake:106 (message): TileDB FindOpenSSL_EP did not set TILEDB_OPENSSL_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) CMake Warning at cmake/Modules/FindCurl_EP.cmake:118 (message): TileDB FindZlib_EP did not set TILEDB_ZLIB_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) -- Could NOT find AWSSDK -- Adding AWSSDK as an external project -- Could NOT find TBB (missing: TBB_LIBRARIES TBB_INCLUDE_DIR) -- Adding TBB as an external project -- Not found clang-tidy -- Not found clang-format -- Found Doxygen: /usr/bin/doxygen (found version "1.8.13") found components: doxygen dot -- Install prefix is /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/dist -- Configuring done -- Generating done -- Build files have been written to: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build Scanning dependencies of target ep_curl [ 1%] Creating directories for 'ep_curl' [ 3%] Performing download step (download, verify and extract) for 'ep_curl' -- ep_curl download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-download-*.log [ 5%] No patch step for 'ep_curl' [ 7%] No update step for 'ep_curl' [ 8%] Performing configure step for 'ep_curl' -- ep_curl configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-configure-*.log [ 10%] Performing build step for 'ep_curl' -- ep_curl build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-build-*.log [ 12%] Performing install step for 'ep_curl' -- ep_curl install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-install-*.log [ 14%] Completed 'ep_curl' [ 14%] Built target ep_curl Scanning dependencies of target ep_awssdk [ 16%] Creating directories for 'ep_awssdk' [ 17%] Performing download step (download, verify and extract) for 'ep_awssdk' -- ep_awssdk download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-download-*.log [ 19%] No patch step for 'ep_awssdk' [ 21%] No update step for 'ep_awssdk' [ 23%] Performing configure step for 'ep_awssdk' -- ep_awssdk configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-configure-*.log [ 25%] Performing build step for 'ep_awssdk' Command killed due to excessive memory consumption [rtd-command-info] start-time: 2020-03-25T22:37:11.992148Z, end-time: 2020-03-25T22:37:13.777457Z, duration: 1, exit-code: 0 git clone --no-single-branch --depth 50 https://github.com/TileDB-Inc/TileDB-Py.git . Cloning into '.'... [rtd-command-info] start-time: 2020-03-25T22:37:14.187549Z, end-time: 2020-03-25T22:37:14.517512Z, duration: 0, exit-code: 0 git checkout --force de2aff00b97498420199a9d16c8375df70e94780 Note: checking out 'de2aff00b97498420199a9d16c8375df70e94780'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at de2aff0 Add error check for libtiledb build validity in setup.py [rtd-command-info] start-time: 2020-03-25T22:37:14.671450Z, end-time: 2020-03-25T22:37:14.984744Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2020-03-25T22:37:16.391344Z, end-time: 2020-03-25T22:37:21.965087Z, duration: 5, exit-code: 0 python3.7 -mvirtualenv Using base prefix '/home/docs/.pyenv/versions/3.7.3' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2020-03-25T22:37:22.125473Z, end-time: 2020-03-25T22:37:23.114558Z, duration: 0, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip Requirement already up-to-date: pip in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (20.0.2) [rtd-command-info] start-time: 2020-03-25T22:37:23.269722Z, end-time: 2020-03-25T22:37:34.966927Z, duration: 11, exit-code: 0 python -m pip install --upgrade --no-cache-dir Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1 Collecting Pygments==2.3.1 Downloading Pygments-2.3.1-py2.py3-none-any.whl (849 kB) Collecting setuptools==41.0.1 Downloading setuptools-41.0.1-py2.py3-none-any.whl (575 kB) Collecting docutils==0.14 Downloading docutils-0.14-py3-none-any.whl (543 kB) Collecting mock==1.0.1 Downloading mock-1.0.1.tar.gz (818 kB) Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.5-py2.py3-none-any.whl (3.1 MB) Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) Collecting readthedocs-sphinx-ext<1.1 Downloading readthedocs_sphinx_ext-1.0.1-py2.py3-none-any.whl (14 kB) Collecting future Downloading future-0.18.2.tar.gz (829 kB) Collecting sphinxcontrib-websupport Downloading sphinxcontrib_websupport-1.2.1-py2.py3-none-any.whl (39 kB) Collecting Jinja2>=2.3 Downloading Jinja2-2.11.1-py2.py3-none-any.whl (126 kB) Collecting babel!=2.0,>=1.3 Downloading Babel-2.8.0-py2.py3-none-any.whl (8.6 MB) Collecting packaging Downloading packaging-20.3-py2.py3-none-any.whl (37 kB) Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.0.0-py2.py3-none-any.whl (97 kB) Collecting imagesize Downloading imagesize-1.2.0-py2.py3-none-any.whl (4.8 kB) Collecting six>=1.5 Downloading six-1.14.0-py2.py3-none-any.whl (10 kB) Collecting requests>=2.0.0 Downloading requests-2.23.0-py2.py3-none-any.whl (58 kB) Collecting MarkupSafe>=0.23 Downloading MarkupSafe-1.1.1-cp37-cp37m-manylinux1_x86_64.whl (27 kB) Collecting pytz>=2015.7 Downloading pytz-2019.3-py2.py3-none-any.whl (509 kB) Collecting pyparsing>=2.0.2 Downloading pyparsing-2.4.6-py2.py3-none-any.whl (67 kB) Collecting certifi>=2017.4.17 Downloading certifi-2019.11.28-py2.py3-none-any.whl (156 kB) Collecting chardet<4,>=3.0.2 Downloading chardet-3.0.4-py2.py3-none-any.whl (133 kB) Collecting idna<3,>=2.5 Downloading idna-2.9-py2.py3-none-any.whl (58 kB) Collecting urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 Downloading urllib3-1.25.8-py2.py3-none-any.whl (125 kB) Building wheels for collected packages: mock, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23754 sha256=b0398a9e244bafbb0ca38c45dc076ca8194bcf5404c5271d128ec2f1a7781216 Stored in directory: /tmp/pip-ephem-wheel-cache-643965o8/wheels/16/03/37/f0a64ab894c9102906f192db1a4071b7592292ad661563c69b Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491058 sha256=454163d9371567896c6764a2f3b3611bdf38239110e6c7fed8d436d07e2138ba Stored in directory: /tmp/pip-ephem-wheel-cache-643965o8/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0 Successfully built mock future Installing collected packages: Pygments, setuptools, docutils, mock, pillow, alabaster, future, commonmark, sphinxcontrib-websupport, MarkupSafe, Jinja2, pytz, babel, pyparsing, six, packaging, snowballstemmer, imagesize, certifi, chardet, idna, urllib3, requests, sphinx, recommonmark, sphinx-rtd-theme, readthedocs-sphinx-ext Attempting uninstall: setuptools Found existing installation: setuptools 46.1.3 Uninstalling setuptools-46.1.3: Successfully uninstalled setuptools-46.1.3 Successfully installed Jinja2-2.11.1 MarkupSafe-1.1.1 Pygments-2.3.1 alabaster-0.7.12 babel-2.8.0 certifi-2019.11.28 chardet-3.0.4 commonmark-0.8.1 docutils-0.14 future-0.18.2 idna-2.9 imagesize-1.2.0 mock-1.0.1 packaging-20.3 pillow-5.4.1 pyparsing-2.4.6 pytz-2019.3 readthedocs-sphinx-ext-1.0.1 recommonmark-0.5.0 requests-2.23.0 setuptools-41.0.1 six-1.14.0 snowballstemmer-2.0.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-websupport-1.2.1 urllib3-1.25.8 [rtd-command-info] start-time: 2020-03-25T22:37:35.144587Z, end-time: 2020-03-25T22:37:47.399684Z, duration: 12, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r requirements.txt Collecting cmake>=3.11.0 Downloading cmake-3.16.3-py3-none-manylinux2010_x86_64.whl (17.0 MB) Collecting cython>=0.29 Downloading Cython-0.29.16-cp37-cp37m-manylinux1_x86_64.whl (2.1 MB) Collecting numpy==1.16.* Downloading numpy-1.16.6-cp37-cp37m-manylinux1_x86_64.whl (17.3 MB) Requirement already satisfied: setuptools>=18.0.1 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 4)) (41.0.1) Collecting setuptools-scm>=1.5.4 Downloading setuptools_scm-3.5.0-py2.py3-none-any.whl (26 kB) Requirement already satisfied: wheel>=0.30 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 6)) (0.34.2) Collecting psutil Downloading psutil-5.7.0.tar.gz (449 kB) Building wheels for collected packages: psutil Building wheel for psutil (setup.py): started Building wheel for psutil (setup.py): finished with status 'done' Created wheel for psutil: filename=psutil-5.7.0-cp37-cp37m-linux_x86_64.whl size=276463 sha256=81e9b7f3ddb42dc099896f62b649ff5c22b188a83b0b4ff3771bf1e076c753fc Stored in directory: /tmp/pip-ephem-wheel-cache-e5t3njdd/wheels/b6/e7/50/aee9cc966163d74430f13f208171dee22f11efa4a4a826661c Successfully built psutil Installing collected packages: cmake, cython, numpy, setuptools-scm, psutil Successfully installed cmake-3.16.3 cython-0.29.16 numpy-1.16.6 psutil-5.7.0 setuptools-scm-3.5.0 [rtd-command-info] start-time: 2020-03-25T22:37:47.564729Z, end-time: 2020-03-25T23:37:18.159663Z, duration: 3570, exit-code: 137 python ./setup.py install --force libtiledb_exists checking 'library_dirs': [] libtiledb_exists found: 'None' running install running bdist_egg GNU Make 4.1 Built for x86_64-pc-linux-gnu Copyright (C) 1988-2014 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. -- The C compiler identification is GNU 7.4.0 -- The CXX compiler identification is GNU 7.4.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Starting TileDB superbuild. -- Found Bzip2: /usr/lib/x86_64-linux-gnu/libbz2.so -- Could NOT find LZ4 (missing: LZ4_LIBRARIES LZ4_INCLUDE_DIR) -- Adding LZ4 as an external project -- Could NOT find Spdlog (missing: SPDLOG_INCLUDE_DIR) -- Adding Spdlog as an external project -- Found Zlib: /usr/lib/x86_64-linux-gnu/libz.so -- Could NOT find Zstd (missing: ZSTD_LIBRARIES ZSTD_INCLUDE_DIR) -- Adding Zstd as an external project -- Found OpenSSL: /usr/lib/x86_64-linux-gnu/libssl.so -- OpenSSL crypto: /usr/lib/x86_64-linux-gnu/libcrypto.so -- root: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/install;/usr/local/opt/openssl -- Could NOT find CURL (missing: CURL_LIBRARY CURL_INCLUDE_DIR) -- Could NOT find Curl (missing: CURL_LIBRARIES CURL_INCLUDE_DIR) -- Adding Curl as an external project CMake Warning at cmake/Modules/FindCurl_EP.cmake:106 (message): TileDB FindOpenSSL_EP did not set TILEDB_OPENSSL_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) CMake Warning at cmake/Modules/FindCurl_EP.cmake:118 (message): TileDB FindZlib_EP did not set TILEDB_ZLIB_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) -- Could NOT find AWSSDK -- Adding AWSSDK as an external project -- Could NOT find TBB (missing: TBB_LIBRARIES TBB_INCLUDE_DIR) -- Adding TBB as an external project -- Not found clang-tidy -- Not found clang-format -- Found Doxygen: /usr/bin/doxygen (found version "1.8.13") found components: doxygen dot -- Install prefix is /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/dist -- Configuring done -- Generating done -- Build files have been written to: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build Scanning dependencies of target ep_curl [ 1%] Creating directories for 'ep_curl' [ 3%] Performing download step (download, verify and extract) for 'ep_curl' -- ep_curl download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-download-*.log [ 5%] No patch step for 'ep_curl' [ 7%] No update step for 'ep_curl' [ 8%] Performing configure step for 'ep_curl' -- ep_curl configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-configure-*.log [ 10%] Performing build step for 'ep_curl' -- ep_curl build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-build-*.log [ 12%] Performing install step for 'ep_curl' -- ep_curl install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-install-*.log [ 14%] Completed 'ep_curl' [ 14%] Built target ep_curl Scanning dependencies of target ep_lz4 [ 16%] Creating directories for 'ep_lz4' [ 17%] Performing download step (download, verify and extract) for 'ep_lz4' -- ep_lz4 download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_lz4-stamp/ep_lz4-download-*.log [ 19%] No patch step for 'ep_lz4' [ 21%] No update step for 'ep_lz4' [ 23%] Performing configure step for 'ep_lz4' -- ep_lz4 configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_lz4-stamp/ep_lz4-configure-*.log [ 25%] Performing build step for 'ep_lz4' -- ep_lz4 build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_lz4-stamp/ep_lz4-build-*.log [ 26%] Performing install step for 'ep_lz4' -- ep_lz4 install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_lz4-stamp/ep_lz4-install-*.log [ 28%] Completed 'ep_lz4' [ 28%] Built target ep_lz4 Scanning dependencies of target ep_zstd [ 30%] Creating directories for 'ep_zstd' [ 32%] Performing download step (download, verify and extract) for 'ep_zstd' -- ep_zstd download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-download-*.log [ 33%] No patch step for 'ep_zstd' [ 35%] No update step for 'ep_zstd' [ 37%] Performing configure step for 'ep_zstd' -- ep_zstd configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-configure-*.log [ 39%] Performing build step for 'ep_zstd' -- ep_zstd build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-build-*.log [ 41%] Performing install step for 'ep_zstd' -- ep_zstd install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-install-*.log [ 42%] Completed 'ep_zstd' [ 42%] Built target ep_zstd Scanning dependencies of target ep_tbb [ 44%] Creating directories for 'ep_tbb' [ 46%] Performing download step (download, verify and extract) for 'ep_tbb' -- ep_tbb download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_tbb-stamp/ep_tbb-download-*.log [ 48%] No patch step for 'ep_tbb' [ 50%] No update step for 'ep_tbb' [ 51%] No configure step for 'ep_tbb' [ 53%] No build step for 'ep_tbb' [ 55%] No install step for 'ep_tbb' [ 57%] Completed 'ep_tbb' [ 57%] Built target ep_tbb Scanning dependencies of target ep_awssdk [ 58%] Creating directories for 'ep_awssdk' [ 60%] Performing download step (download, verify and extract) for 'ep_awssdk' -- ep_awssdk download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-download-*.log [ 62%] No patch step for 'ep_awssdk' [ 64%] No update step for 'ep_awssdk' [ 66%] Performing configure step for 'ep_awssdk' -- ep_awssdk configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-configure-*.log [ 67%] Performing build step for 'ep_awssdk' Command killed due to excessive memory consumption [rtd-command-info] start-time: 2020-03-25T23:37:12.295858Z, end-time: 2020-03-25T23:37:13.913941Z, duration: 1, exit-code: 0 git clone --no-single-branch --depth 50 https://github.com/TileDB-Inc/TileDB-Py.git . Cloning into '.'... [rtd-command-info] start-time: 2020-03-25T23:37:14.321280Z, end-time: 2020-03-25T23:37:14.646488Z, duration: 0, exit-code: 0 git checkout --force de2aff00b97498420199a9d16c8375df70e94780 Note: checking out 'de2aff00b97498420199a9d16c8375df70e94780'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at de2aff0 Add error check for libtiledb build validity in setup.py [rtd-command-info] start-time: 2020-03-25T23:37:14.805932Z, end-time: 2020-03-25T23:37:15.117300Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2020-03-25T23:37:16.710699Z, end-time: 2020-03-25T23:37:21.309368Z, duration: 4, exit-code: 0 python3.7 -mvirtualenv Using base prefix '/home/docs/.pyenv/versions/3.7.3' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2020-03-25T23:37:21.473848Z, end-time: 2020-03-25T23:37:22.448029Z, duration: 0, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip Requirement already up-to-date: pip in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (20.0.2) [rtd-command-info] start-time: 2020-03-25T23:37:22.641734Z, end-time: 2020-03-25T23:37:34.832123Z, duration: 12, exit-code: 0 python -m pip install --upgrade --no-cache-dir Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1 Collecting Pygments==2.3.1 Downloading Pygments-2.3.1-py2.py3-none-any.whl (849 kB) Collecting setuptools==41.0.1 Downloading setuptools-41.0.1-py2.py3-none-any.whl (575 kB) Collecting docutils==0.14 Downloading docutils-0.14-py3-none-any.whl (543 kB) Collecting mock==1.0.1 Downloading mock-1.0.1.tar.gz (818 kB) Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.5-py2.py3-none-any.whl (3.1 MB) Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) Collecting readthedocs-sphinx-ext<1.1 Downloading readthedocs_sphinx_ext-1.0.1-py2.py3-none-any.whl (14 kB) Collecting future Downloading future-0.18.2.tar.gz (829 kB) Collecting babel!=2.0,>=1.3 Downloading Babel-2.8.0-py2.py3-none-any.whl (8.6 MB) Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.0.0-py2.py3-none-any.whl (97 kB) Collecting imagesize Downloading imagesize-1.2.0-py2.py3-none-any.whl (4.8 kB) Collecting packaging Downloading packaging-20.3-py2.py3-none-any.whl (37 kB) Collecting Jinja2>=2.3 Downloading Jinja2-2.11.1-py2.py3-none-any.whl (126 kB) Collecting requests>=2.0.0 Downloading requests-2.23.0-py2.py3-none-any.whl (58 kB) Collecting sphinxcontrib-websupport Downloading sphinxcontrib_websupport-1.2.1-py2.py3-none-any.whl (39 kB) Collecting six>=1.5 Downloading six-1.14.0-py2.py3-none-any.whl (10 kB) Collecting pytz>=2015.7 Downloading pytz-2019.3-py2.py3-none-any.whl (509 kB) Collecting pyparsing>=2.0.2 Downloading pyparsing-2.4.6-py2.py3-none-any.whl (67 kB) Collecting MarkupSafe>=0.23 Downloading MarkupSafe-1.1.1-cp37-cp37m-manylinux1_x86_64.whl (27 kB) Collecting idna<3,>=2.5 Downloading idna-2.9-py2.py3-none-any.whl (58 kB) Collecting chardet<4,>=3.0.2 Downloading chardet-3.0.4-py2.py3-none-any.whl (133 kB) Collecting certifi>=2017.4.17 Downloading certifi-2019.11.28-py2.py3-none-any.whl (156 kB) Collecting urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 Downloading urllib3-1.25.8-py2.py3-none-any.whl (125 kB) Building wheels for collected packages: mock, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23754 sha256=752352da3bf7621db4fde527731210d2ee5521de9ae5a20776e2b8f384129d33 Stored in directory: /tmp/pip-ephem-wheel-cache-tt945ehz/wheels/16/03/37/f0a64ab894c9102906f192db1a4071b7592292ad661563c69b Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491058 sha256=82807b32ccf91cc6d1a9fbdba00d5049382ac4d4a2d8b336d0e8a6c6612acbf2 Stored in directory: /tmp/pip-ephem-wheel-cache-tt945ehz/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0 Successfully built mock future Installing collected packages: Pygments, setuptools, docutils, mock, pillow, alabaster, future, commonmark, pytz, babel, snowballstemmer, imagesize, pyparsing, six, packaging, MarkupSafe, Jinja2, idna, chardet, certifi, urllib3, requests, sphinxcontrib-websupport, sphinx, recommonmark, sphinx-rtd-theme, readthedocs-sphinx-ext Attempting uninstall: setuptools Found existing installation: setuptools 46.1.3 Uninstalling setuptools-46.1.3: Successfully uninstalled setuptools-46.1.3 Successfully installed Jinja2-2.11.1 MarkupSafe-1.1.1 Pygments-2.3.1 alabaster-0.7.12 babel-2.8.0 certifi-2019.11.28 chardet-3.0.4 commonmark-0.8.1 docutils-0.14 future-0.18.2 idna-2.9 imagesize-1.2.0 mock-1.0.1 packaging-20.3 pillow-5.4.1 pyparsing-2.4.6 pytz-2019.3 readthedocs-sphinx-ext-1.0.1 recommonmark-0.5.0 requests-2.23.0 setuptools-41.0.1 six-1.14.0 snowballstemmer-2.0.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-websupport-1.2.1 urllib3-1.25.8 [rtd-command-info] start-time: 2020-03-25T23:37:34.998694Z, end-time: 2020-03-25T23:37:46.968548Z, duration: 11, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r requirements.txt Collecting cmake>=3.11.0 Downloading cmake-3.16.3-py3-none-manylinux2010_x86_64.whl (17.0 MB) Collecting cython>=0.29 Downloading Cython-0.29.16-cp37-cp37m-manylinux1_x86_64.whl (2.1 MB) Collecting numpy==1.16.* Downloading numpy-1.16.6-cp37-cp37m-manylinux1_x86_64.whl (17.3 MB) Requirement already satisfied: setuptools>=18.0.1 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 4)) (41.0.1) Collecting setuptools-scm>=1.5.4 Downloading setuptools_scm-3.5.0-py2.py3-none-any.whl (26 kB) Requirement already satisfied: wheel>=0.30 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 6)) (0.34.2) Collecting psutil Downloading psutil-5.7.0.tar.gz (449 kB) Building wheels for collected packages: psutil Building wheel for psutil (setup.py): started Building wheel for psutil (setup.py): finished with status 'done' Created wheel for psutil: filename=psutil-5.7.0-cp37-cp37m-linux_x86_64.whl size=276472 sha256=9ebea66a2c9eb5fde64a58f7389af044dd7857e4351922aabdd27c6f36b8dc0a Stored in directory: /tmp/pip-ephem-wheel-cache-cm86y0fv/wheels/b6/e7/50/aee9cc966163d74430f13f208171dee22f11efa4a4a826661c Successfully built psutil Installing collected packages: cmake, cython, numpy, setuptools-scm, psutil Successfully installed cmake-3.16.3 cython-0.29.16 numpy-1.16.6 psutil-5.7.0 setuptools-scm-3.5.0 [rtd-command-info] start-time: 2020-03-25T23:37:47.130138Z, end-time: 2020-03-26T00:37:18.726147Z, duration: 3571, exit-code: 137 python ./setup.py install --force libtiledb_exists checking 'library_dirs': [] libtiledb_exists found: 'None' running install running bdist_egg GNU Make 4.1 Built for x86_64-pc-linux-gnu Copyright (C) 1988-2014 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. -- The C compiler identification is GNU 7.4.0 -- The CXX compiler identification is GNU 7.4.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Starting TileDB superbuild. -- Found Bzip2: /usr/lib/x86_64-linux-gnu/libbz2.so -- Could NOT find LZ4 (missing: LZ4_LIBRARIES LZ4_INCLUDE_DIR) -- Adding LZ4 as an external project -- Could NOT find Spdlog (missing: SPDLOG_INCLUDE_DIR) -- Adding Spdlog as an external project -- Found Zlib: /usr/lib/x86_64-linux-gnu/libz.so -- Could NOT find Zstd (missing: ZSTD_LIBRARIES ZSTD_INCLUDE_DIR) -- Adding Zstd as an external project -- Found OpenSSL: /usr/lib/x86_64-linux-gnu/libssl.so -- OpenSSL crypto: /usr/lib/x86_64-linux-gnu/libcrypto.so -- root: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/install;/usr/local/opt/openssl -- Could NOT find CURL (missing: CURL_LIBRARY CURL_INCLUDE_DIR) -- Could NOT find Curl (missing: CURL_LIBRARIES CURL_INCLUDE_DIR) -- Adding Curl as an external project CMake Warning at cmake/Modules/FindCurl_EP.cmake:106 (message): TileDB FindOpenSSL_EP did not set TILEDB_OPENSSL_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) CMake Warning at cmake/Modules/FindCurl_EP.cmake:118 (message): TileDB FindZlib_EP did not set TILEDB_ZLIB_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) -- Could NOT find AWSSDK -- Adding AWSSDK as an external project -- Could NOT find TBB (missing: TBB_LIBRARIES TBB_INCLUDE_DIR) -- Adding TBB as an external project -- Not found clang-tidy -- Not found clang-format -- Found Doxygen: /usr/bin/doxygen (found version "1.8.13") found components: doxygen dot -- Install prefix is /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/dist -- Configuring done -- Generating done -- Build files have been written to: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build Scanning dependencies of target ep_curl [ 1%] Creating directories for 'ep_curl' [ 3%] Performing download step (download, verify and extract) for 'ep_curl' -- ep_curl download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-download-*.log [ 5%] No patch step for 'ep_curl' [ 7%] No update step for 'ep_curl' [ 8%] Performing configure step for 'ep_curl' -- ep_curl configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-configure-*.log [ 10%] Performing build step for 'ep_curl' -- ep_curl build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-build-*.log [ 12%] Performing install step for 'ep_curl' -- ep_curl install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-install-*.log [ 14%] Completed 'ep_curl' [ 14%] Built target ep_curl Scanning dependencies of target ep_awssdk [ 16%] Creating directories for 'ep_awssdk' [ 17%] Performing download step (download, verify and extract) for 'ep_awssdk' -- ep_awssdk download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-download-*.log [ 19%] No patch step for 'ep_awssdk' [ 21%] No update step for 'ep_awssdk' [ 23%] Performing configure step for 'ep_awssdk' -- ep_awssdk configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-configure-*.log [ 25%] Performing build step for 'ep_awssdk' Command killed due to excessive memory consumption [rtd-command-info] start-time: 2020-03-26T00:37:12.815730Z, end-time: 2020-03-26T00:37:14.308819Z, duration: 1, exit-code: 0 git clone --no-single-branch --depth 50 https://github.com/TileDB-Inc/TileDB-Py.git . Cloning into '.'... [rtd-command-info] start-time: 2020-03-26T00:37:14.765025Z, end-time: 2020-03-26T00:37:15.093932Z, duration: 0, exit-code: 0 git checkout --force de2aff00b97498420199a9d16c8375df70e94780 Note: checking out 'de2aff00b97498420199a9d16c8375df70e94780'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at de2aff0 Add error check for libtiledb build validity in setup.py [rtd-command-info] start-time: 2020-03-26T00:37:15.250066Z, end-time: 2020-03-26T00:37:15.571713Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2020-03-26T00:37:17.024880Z, end-time: 2020-03-26T00:37:22.105366Z, duration: 5, exit-code: 0 python3.7 -mvirtualenv Using base prefix '/home/docs/.pyenv/versions/3.7.3' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2020-03-26T00:37:22.266409Z, end-time: 2020-03-26T00:37:23.266148Z, duration: 0, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip Requirement already up-to-date: pip in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (20.0.2) [rtd-command-info] start-time: 2020-03-26T00:37:23.423502Z, end-time: 2020-03-26T00:37:35.275830Z, duration: 11, exit-code: 0 python -m pip install --upgrade --no-cache-dir Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1 Collecting Pygments==2.3.1 Downloading Pygments-2.3.1-py2.py3-none-any.whl (849 kB) Collecting setuptools==41.0.1 Downloading setuptools-41.0.1-py2.py3-none-any.whl (575 kB) Collecting docutils==0.14 Downloading docutils-0.14-py3-none-any.whl (543 kB) Collecting mock==1.0.1 Downloading mock-1.0.1.tar.gz (818 kB) Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.5-py2.py3-none-any.whl (3.1 MB) Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) Collecting readthedocs-sphinx-ext<1.1 Downloading readthedocs_sphinx_ext-1.0.1-py2.py3-none-any.whl (14 kB) Collecting future Downloading future-0.18.2.tar.gz (829 kB) Collecting sphinxcontrib-websupport Downloading sphinxcontrib_websupport-1.2.1-py2.py3-none-any.whl (39 kB) Collecting requests>=2.0.0 Downloading requests-2.23.0-py2.py3-none-any.whl (58 kB) Collecting imagesize Downloading imagesize-1.2.0-py2.py3-none-any.whl (4.8 kB) Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.0.0-py2.py3-none-any.whl (97 kB) Collecting six>=1.5 Downloading six-1.14.0-py2.py3-none-any.whl (10 kB) Collecting babel!=2.0,>=1.3 Downloading Babel-2.8.0-py2.py3-none-any.whl (8.6 MB) Collecting Jinja2>=2.3 Downloading Jinja2-2.11.1-py2.py3-none-any.whl (126 kB) Collecting packaging Downloading packaging-20.3-py2.py3-none-any.whl (37 kB) Collecting idna<3,>=2.5 Downloading idna-2.9-py2.py3-none-any.whl (58 kB) Collecting urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 Downloading urllib3-1.25.8-py2.py3-none-any.whl (125 kB) Collecting chardet<4,>=3.0.2 Downloading chardet-3.0.4-py2.py3-none-any.whl (133 kB) Collecting certifi>=2017.4.17 Downloading certifi-2019.11.28-py2.py3-none-any.whl (156 kB) Collecting pytz>=2015.7 Downloading pytz-2019.3-py2.py3-none-any.whl (509 kB) Collecting MarkupSafe>=0.23 Downloading MarkupSafe-1.1.1-cp37-cp37m-manylinux1_x86_64.whl (27 kB) Collecting pyparsing>=2.0.2 Downloading pyparsing-2.4.6-py2.py3-none-any.whl (67 kB) Building wheels for collected packages: mock, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23754 sha256=fd6c84406e818f4dd75b1eb17deb4f26728d433ee24b5ee12d036d779cbc2f07 Stored in directory: /tmp/pip-ephem-wheel-cache-_q67cxq6/wheels/16/03/37/f0a64ab894c9102906f192db1a4071b7592292ad661563c69b Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491058 sha256=8ca3f9aaac905a1e9b0ab16551a3b325a8b534d5183775f0b4e3d755b5b7325a Stored in directory: /tmp/pip-ephem-wheel-cache-_q67cxq6/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0 Successfully built mock future Installing collected packages: Pygments, setuptools, docutils, mock, pillow, alabaster, future, commonmark, sphinxcontrib-websupport, idna, urllib3, chardet, certifi, requests, imagesize, snowballstemmer, six, pytz, babel, MarkupSafe, Jinja2, pyparsing, packaging, sphinx, recommonmark, sphinx-rtd-theme, readthedocs-sphinx-ext Attempting uninstall: setuptools Found existing installation: setuptools 46.1.3 Uninstalling setuptools-46.1.3: Successfully uninstalled setuptools-46.1.3 Successfully installed Jinja2-2.11.1 MarkupSafe-1.1.1 Pygments-2.3.1 alabaster-0.7.12 babel-2.8.0 certifi-2019.11.28 chardet-3.0.4 commonmark-0.8.1 docutils-0.14 future-0.18.2 idna-2.9 imagesize-1.2.0 mock-1.0.1 packaging-20.3 pillow-5.4.1 pyparsing-2.4.6 pytz-2019.3 readthedocs-sphinx-ext-1.0.1 recommonmark-0.5.0 requests-2.23.0 setuptools-41.0.1 six-1.14.0 snowballstemmer-2.0.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-websupport-1.2.1 urllib3-1.25.8 [rtd-command-info] start-time: 2020-03-26T00:37:35.429905Z, end-time: 2020-03-26T00:37:50.245243Z, duration: 14, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r requirements.txt Collecting cmake>=3.11.0 Downloading cmake-3.16.3-py3-none-manylinux2010_x86_64.whl (17.0 MB) Collecting cython>=0.29 Downloading Cython-0.29.16-cp37-cp37m-manylinux1_x86_64.whl (2.1 MB) Collecting numpy==1.16.* Downloading numpy-1.16.6-cp37-cp37m-manylinux1_x86_64.whl (17.3 MB) Requirement already satisfied: setuptools>=18.0.1 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 4)) (41.0.1) Collecting setuptools-scm>=1.5.4 Downloading setuptools_scm-3.5.0-py2.py3-none-any.whl (26 kB) Requirement already satisfied: wheel>=0.30 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 6)) (0.34.2) Collecting psutil Downloading psutil-5.7.0.tar.gz (449 kB) Building wheels for collected packages: psutil Building wheel for psutil (setup.py): started Building wheel for psutil (setup.py): finished with status 'done' Created wheel for psutil: filename=psutil-5.7.0-cp37-cp37m-linux_x86_64.whl size=276457 sha256=a0febfcc9d834eb19bda6f7d660b3651d5d6490d15d6d9b6ff67d81867a1e7ae Stored in directory: /tmp/pip-ephem-wheel-cache-k8yjk47p/wheels/b6/e7/50/aee9cc966163d74430f13f208171dee22f11efa4a4a826661c Successfully built psutil Installing collected packages: cmake, cython, numpy, setuptools-scm, psutil Successfully installed cmake-3.16.3 cython-0.29.16 numpy-1.16.6 psutil-5.7.0 setuptools-scm-3.5.0 [rtd-command-info] start-time: 2020-03-26T00:37:50.419145Z, end-time: 2020-03-26T01:37:21.666885Z, duration: 3571, exit-code: 137 python ./setup.py install --force libtiledb_exists checking 'library_dirs': [] libtiledb_exists found: 'None' running install running bdist_egg GNU Make 4.1 Built for x86_64-pc-linux-gnu Copyright (C) 1988-2014 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. -- The C compiler identification is GNU 7.4.0 -- The CXX compiler identification is GNU 7.4.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Starting TileDB superbuild. -- Found Bzip2: /usr/lib/x86_64-linux-gnu/libbz2.so -- Could NOT find LZ4 (missing: LZ4_LIBRARIES LZ4_INCLUDE_DIR) -- Adding LZ4 as an external project -- Could NOT find Spdlog (missing: SPDLOG_INCLUDE_DIR) -- Adding Spdlog as an external project -- Found Zlib: /usr/lib/x86_64-linux-gnu/libz.so -- Could NOT find Zstd (missing: ZSTD_LIBRARIES ZSTD_INCLUDE_DIR) -- Adding Zstd as an external project -- Found OpenSSL: /usr/lib/x86_64-linux-gnu/libssl.so -- OpenSSL crypto: /usr/lib/x86_64-linux-gnu/libcrypto.so -- root: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/install;/usr/local/opt/openssl -- Could NOT find CURL (missing: CURL_LIBRARY CURL_INCLUDE_DIR) -- Could NOT find Curl (missing: CURL_LIBRARIES CURL_INCLUDE_DIR) -- Adding Curl as an external project CMake Warning at cmake/Modules/FindCurl_EP.cmake:106 (message): TileDB FindOpenSSL_EP did not set TILEDB_OPENSSL_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) CMake Warning at cmake/Modules/FindCurl_EP.cmake:118 (message): TileDB FindZlib_EP did not set TILEDB_ZLIB_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) -- Could NOT find AWSSDK -- Adding AWSSDK as an external project -- Could NOT find TBB (missing: TBB_LIBRARIES TBB_INCLUDE_DIR) -- Adding TBB as an external project -- Not found clang-tidy -- Not found clang-format -- Found Doxygen: /usr/bin/doxygen (found version "1.8.13") found components: doxygen dot -- Install prefix is /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/dist -- Configuring done -- Generating done -- Build files have been written to: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build Scanning dependencies of target ep_curl [ 1%] Creating directories for 'ep_curl' [ 3%] Performing download step (download, verify and extract) for 'ep_curl' -- ep_curl download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-download-*.log [ 5%] No patch step for 'ep_curl' [ 7%] No update step for 'ep_curl' [ 8%] Performing configure step for 'ep_curl' -- ep_curl configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-configure-*.log [ 10%] Performing build step for 'ep_curl' -- ep_curl build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-build-*.log [ 12%] Performing install step for 'ep_curl' -- ep_curl install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-install-*.log [ 14%] Completed 'ep_curl' [ 14%] Built target ep_curl Scanning dependencies of target ep_awssdk [ 16%] Creating directories for 'ep_awssdk' [ 17%] Performing download step (download, verify and extract) for 'ep_awssdk' -- ep_awssdk download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-download-*.log [ 19%] No patch step for 'ep_awssdk' [ 21%] No update step for 'ep_awssdk' [ 23%] Performing configure step for 'ep_awssdk' -- ep_awssdk configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-configure-*.log [ 25%] Performing build step for 'ep_awssdk' Command killed due to excessive memory consumption [rtd-command-info] start-time: 2020-03-26T01:37:13.298491Z, end-time: 2020-03-26T01:37:14.730121Z, duration: 1, exit-code: 0 git clone --no-single-branch --depth 50 https://github.com/TileDB-Inc/TileDB-Py.git . Cloning into '.'... [rtd-command-info] start-time: 2020-03-26T01:37:15.152743Z, end-time: 2020-03-26T01:37:15.466714Z, duration: 0, exit-code: 0 git checkout --force de2aff00b97498420199a9d16c8375df70e94780 Note: checking out 'de2aff00b97498420199a9d16c8375df70e94780'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at de2aff0 Add error check for libtiledb build validity in setup.py [rtd-command-info] start-time: 2020-03-26T01:37:15.627952Z, end-time: 2020-03-26T01:37:15.950090Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2020-03-26T01:37:17.363752Z, end-time: 2020-03-26T01:37:22.358310Z, duration: 4, exit-code: 0 python3.7 -mvirtualenv Using base prefix '/home/docs/.pyenv/versions/3.7.3' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2020-03-26T01:37:22.531091Z, end-time: 2020-03-26T01:37:23.540222Z, duration: 1, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip Requirement already up-to-date: pip in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (20.0.2) [rtd-command-info] start-time: 2020-03-26T01:37:23.695356Z, end-time: 2020-03-26T01:37:35.449995Z, duration: 11, exit-code: 0 python -m pip install --upgrade --no-cache-dir Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1 Collecting Pygments==2.3.1 Downloading Pygments-2.3.1-py2.py3-none-any.whl (849 kB) Collecting setuptools==41.0.1 Downloading setuptools-41.0.1-py2.py3-none-any.whl (575 kB) Collecting docutils==0.14 Downloading docutils-0.14-py3-none-any.whl (543 kB) Collecting mock==1.0.1 Downloading mock-1.0.1.tar.gz (818 kB) Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.5-py2.py3-none-any.whl (3.1 MB) Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) Collecting readthedocs-sphinx-ext<1.1 Downloading readthedocs_sphinx_ext-1.0.1-py2.py3-none-any.whl (14 kB) Collecting future Downloading future-0.18.2.tar.gz (829 kB) Collecting packaging Downloading packaging-20.3-py2.py3-none-any.whl (37 kB) Collecting Jinja2>=2.3 Downloading Jinja2-2.11.1-py2.py3-none-any.whl (126 kB) Collecting six>=1.5 Downloading six-1.14.0-py2.py3-none-any.whl (10 kB) Collecting babel!=2.0,>=1.3 Downloading Babel-2.8.0-py2.py3-none-any.whl (8.6 MB) Collecting sphinxcontrib-websupport Downloading sphinxcontrib_websupport-1.2.1-py2.py3-none-any.whl (39 kB) Collecting requests>=2.0.0 Downloading requests-2.23.0-py2.py3-none-any.whl (58 kB) Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.0.0-py2.py3-none-any.whl (97 kB) Collecting imagesize Downloading imagesize-1.2.0-py2.py3-none-any.whl (4.8 kB) Collecting pyparsing>=2.0.2 Downloading pyparsing-2.4.6-py2.py3-none-any.whl (67 kB) Collecting MarkupSafe>=0.23 Downloading MarkupSafe-1.1.1-cp37-cp37m-manylinux1_x86_64.whl (27 kB) Collecting pytz>=2015.7 Downloading pytz-2019.3-py2.py3-none-any.whl (509 kB) Collecting chardet<4,>=3.0.2 Downloading chardet-3.0.4-py2.py3-none-any.whl (133 kB) Collecting certifi>=2017.4.17 Downloading certifi-2019.11.28-py2.py3-none-any.whl (156 kB) Collecting idna<3,>=2.5 Downloading idna-2.9-py2.py3-none-any.whl (58 kB) Collecting urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 Downloading urllib3-1.25.8-py2.py3-none-any.whl (125 kB) Building wheels for collected packages: mock, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23754 sha256=821d683ec38ff4f726d4c58b591d93c27baea0a64cae8cdd3eb29ed9dc798b13 Stored in directory: /tmp/pip-ephem-wheel-cache-0fmnkh55/wheels/16/03/37/f0a64ab894c9102906f192db1a4071b7592292ad661563c69b Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491058 sha256=6ab06f7848c3b193b4972d77b07c9da3ac77c55c474b1488c49014cc26899fad Stored in directory: /tmp/pip-ephem-wheel-cache-0fmnkh55/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0 Successfully built mock future Installing collected packages: Pygments, setuptools, docutils, mock, pillow, alabaster, future, commonmark, six, pyparsing, packaging, MarkupSafe, Jinja2, pytz, babel, sphinxcontrib-websupport, chardet, certifi, idna, urllib3, requests, snowballstemmer, imagesize, sphinx, recommonmark, sphinx-rtd-theme, readthedocs-sphinx-ext Attempting uninstall: setuptools Found existing installation: setuptools 46.1.3 Uninstalling setuptools-46.1.3: Successfully uninstalled setuptools-46.1.3 Successfully installed Jinja2-2.11.1 MarkupSafe-1.1.1 Pygments-2.3.1 alabaster-0.7.12 babel-2.8.0 certifi-2019.11.28 chardet-3.0.4 commonmark-0.8.1 docutils-0.14 future-0.18.2 idna-2.9 imagesize-1.2.0 mock-1.0.1 packaging-20.3 pillow-5.4.1 pyparsing-2.4.6 pytz-2019.3 readthedocs-sphinx-ext-1.0.1 recommonmark-0.5.0 requests-2.23.0 setuptools-41.0.1 six-1.14.0 snowballstemmer-2.0.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-websupport-1.2.1 urllib3-1.25.8 [rtd-command-info] start-time: 2020-03-26T01:37:35.607730Z, end-time: 2020-03-26T01:37:47.096587Z, duration: 11, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r requirements.txt Collecting cmake>=3.11.0 Downloading cmake-3.16.3-py3-none-manylinux2010_x86_64.whl (17.0 MB) Collecting cython>=0.29 Downloading Cython-0.29.16-cp37-cp37m-manylinux1_x86_64.whl (2.1 MB) Collecting numpy==1.16.* Downloading numpy-1.16.6-cp37-cp37m-manylinux1_x86_64.whl (17.3 MB) Requirement already satisfied: setuptools>=18.0.1 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 4)) (41.0.1) Collecting setuptools-scm>=1.5.4 Downloading setuptools_scm-3.5.0-py2.py3-none-any.whl (26 kB) Requirement already satisfied: wheel>=0.30 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 6)) (0.34.2) Collecting psutil Downloading psutil-5.7.0.tar.gz (449 kB) Building wheels for collected packages: psutil Building wheel for psutil (setup.py): started Building wheel for psutil (setup.py): finished with status 'done' Created wheel for psutil: filename=psutil-5.7.0-cp37-cp37m-linux_x86_64.whl size=276468 sha256=99b8df96c3ff96ac819b87fd325ed207d685ea46d755a1ade25287cd72437931 Stored in directory: /tmp/pip-ephem-wheel-cache-newa8nco/wheels/b6/e7/50/aee9cc966163d74430f13f208171dee22f11efa4a4a826661c Successfully built psutil Installing collected packages: cmake, cython, numpy, setuptools-scm, psutil Successfully installed cmake-3.16.3 cython-0.29.16 numpy-1.16.6 psutil-5.7.0 setuptools-scm-3.5.0 [rtd-command-info] start-time: 2020-03-26T01:37:47.256962Z, end-time: 2020-03-26T02:37:19.414216Z, duration: 3572, exit-code: 137 python ./setup.py install --force libtiledb_exists checking 'library_dirs': [] libtiledb_exists found: 'None' running install running bdist_egg GNU Make 4.1 Built for x86_64-pc-linux-gnu Copyright (C) 1988-2014 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. -- The C compiler identification is GNU 7.4.0 -- The CXX compiler identification is GNU 7.4.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Starting TileDB superbuild. -- Found Bzip2: /usr/lib/x86_64-linux-gnu/libbz2.so -- Could NOT find LZ4 (missing: LZ4_LIBRARIES LZ4_INCLUDE_DIR) -- Adding LZ4 as an external project -- Could NOT find Spdlog (missing: SPDLOG_INCLUDE_DIR) -- Adding Spdlog as an external project -- Found Zlib: /usr/lib/x86_64-linux-gnu/libz.so -- Could NOT find Zstd (missing: ZSTD_LIBRARIES ZSTD_INCLUDE_DIR) -- Adding Zstd as an external project -- Found OpenSSL: /usr/lib/x86_64-linux-gnu/libssl.so -- OpenSSL crypto: /usr/lib/x86_64-linux-gnu/libcrypto.so -- root: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/install;/usr/local/opt/openssl -- Could NOT find CURL (missing: CURL_LIBRARY CURL_INCLUDE_DIR) -- Could NOT find Curl (missing: CURL_LIBRARIES CURL_INCLUDE_DIR) -- Adding Curl as an external project CMake Warning at cmake/Modules/FindCurl_EP.cmake:106 (message): TileDB FindOpenSSL_EP did not set TILEDB_OPENSSL_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) CMake Warning at cmake/Modules/FindCurl_EP.cmake:118 (message): TileDB FindZlib_EP did not set TILEDB_ZLIB_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) -- Could NOT find AWSSDK -- Adding AWSSDK as an external project -- Could NOT find TBB (missing: TBB_LIBRARIES TBB_INCLUDE_DIR) -- Adding TBB as an external project -- Not found clang-tidy -- Not found clang-format -- Found Doxygen: /usr/bin/doxygen (found version "1.8.13") found components: doxygen dot -- Install prefix is /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/dist -- Configuring done -- Generating done -- Build files have been written to: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build Scanning dependencies of target ep_curl [ 1%] Creating directories for 'ep_curl' [ 3%] Performing download step (download, verify and extract) for 'ep_curl' -- ep_curl download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-download-*.log [ 5%] No patch step for 'ep_curl' [ 7%] No update step for 'ep_curl' [ 8%] Performing configure step for 'ep_curl' -- ep_curl configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-configure-*.log [ 10%] Performing build step for 'ep_curl' -- ep_curl build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-build-*.log [ 12%] Performing install step for 'ep_curl' -- ep_curl install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-install-*.log [ 14%] Completed 'ep_curl' [ 14%] Built target ep_curl Scanning dependencies of target ep_awssdk [ 16%] Creating directories for 'ep_awssdk' [ 17%] Performing download step (download, verify and extract) for 'ep_awssdk' -- ep_awssdk download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-download-*.log [ 19%] No patch step for 'ep_awssdk' [ 21%] No update step for 'ep_awssdk' [ 23%] Performing configure step for 'ep_awssdk' -- ep_awssdk configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-configure-*.log [ 25%] Performing build step for 'ep_awssdk' Command killed due to excessive memory consumption [rtd-command-info] start-time: 2020-03-26T02:37:13.376217Z, end-time: 2020-03-26T02:37:17.840192Z, duration: 4, exit-code: 0 git clone --no-single-branch --depth 50 https://github.com/TileDB-Inc/TileDB-Py.git . Cloning into '.'... [rtd-command-info] start-time: 2020-03-26T02:37:18.291133Z, end-time: 2020-03-26T02:37:18.611777Z, duration: 0, exit-code: 0 git checkout --force de2aff00b97498420199a9d16c8375df70e94780 Note: checking out 'de2aff00b97498420199a9d16c8375df70e94780'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at de2aff0 Add error check for libtiledb build validity in setup.py [rtd-command-info] start-time: 2020-03-26T02:37:18.773329Z, end-time: 2020-03-26T02:37:19.084561Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2020-03-26T02:37:20.499193Z, end-time: 2020-03-26T02:37:32.210791Z, duration: 11, exit-code: 0 python3.7 -mvirtualenv Using base prefix '/home/docs/.pyenv/versions/3.7.3' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2020-03-26T02:37:32.370644Z, end-time: 2020-03-26T02:37:33.362626Z, duration: 0, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip Requirement already up-to-date: pip in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (20.0.2) [rtd-command-info] start-time: 2020-03-26T02:37:33.519454Z, end-time: 2020-03-26T02:37:45.881583Z, duration: 12, exit-code: 0 python -m pip install --upgrade --no-cache-dir Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1 Collecting Pygments==2.3.1 Downloading Pygments-2.3.1-py2.py3-none-any.whl (849 kB) Collecting setuptools==41.0.1 Downloading setuptools-41.0.1-py2.py3-none-any.whl (575 kB) Collecting docutils==0.14 Downloading docutils-0.14-py3-none-any.whl (543 kB) Collecting mock==1.0.1 Downloading mock-1.0.1.tar.gz (818 kB) Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.5-py2.py3-none-any.whl (3.1 MB) Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) Collecting readthedocs-sphinx-ext<1.1 Downloading readthedocs_sphinx_ext-1.0.1-py2.py3-none-any.whl (14 kB) Collecting future Downloading future-0.18.2.tar.gz (829 kB) Collecting babel!=2.0,>=1.3 Downloading Babel-2.8.0-py2.py3-none-any.whl (8.6 MB) Collecting Jinja2>=2.3 Downloading Jinja2-2.11.1-py2.py3-none-any.whl (126 kB) Collecting packaging Downloading packaging-20.3-py2.py3-none-any.whl (37 kB) Collecting requests>=2.0.0 Downloading requests-2.23.0-py2.py3-none-any.whl (58 kB) Collecting imagesize Downloading imagesize-1.2.0-py2.py3-none-any.whl (4.8 kB) Collecting sphinxcontrib-websupport Downloading sphinxcontrib_websupport-1.2.1-py2.py3-none-any.whl (39 kB) Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.0.0-py2.py3-none-any.whl (97 kB) Collecting six>=1.5 Downloading six-1.14.0-py2.py3-none-any.whl (10 kB) Collecting pytz>=2015.7 Downloading pytz-2019.3-py2.py3-none-any.whl (509 kB) Collecting MarkupSafe>=0.23 Downloading MarkupSafe-1.1.1-cp37-cp37m-manylinux1_x86_64.whl (27 kB) Collecting pyparsing>=2.0.2 Downloading pyparsing-2.4.6-py2.py3-none-any.whl (67 kB) Collecting urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 Downloading urllib3-1.25.8-py2.py3-none-any.whl (125 kB) Collecting certifi>=2017.4.17 Downloading certifi-2019.11.28-py2.py3-none-any.whl (156 kB) Collecting chardet<4,>=3.0.2 Downloading chardet-3.0.4-py2.py3-none-any.whl (133 kB) Collecting idna<3,>=2.5 Downloading idna-2.9-py2.py3-none-any.whl (58 kB) Building wheels for collected packages: mock, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23754 sha256=3d8f766100cae2ff152694bd17a33bcd9e3644eacfa70386bc4b91154e61495b Stored in directory: /tmp/pip-ephem-wheel-cache-wr_lp3hb/wheels/16/03/37/f0a64ab894c9102906f192db1a4071b7592292ad661563c69b Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491058 sha256=486584f90068cd1a18ee7a776bb679eaeed8e5b46103cbae3f52f0ee76f57864 Stored in directory: /tmp/pip-ephem-wheel-cache-wr_lp3hb/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0 Successfully built mock future Installing collected packages: Pygments, setuptools, docutils, mock, pillow, alabaster, future, commonmark, pytz, babel, MarkupSafe, Jinja2, six, pyparsing, packaging, urllib3, certifi, chardet, idna, requests, imagesize, sphinxcontrib-websupport, snowballstemmer, sphinx, recommonmark, sphinx-rtd-theme, readthedocs-sphinx-ext Attempting uninstall: setuptools Found existing installation: setuptools 46.1.3 Uninstalling setuptools-46.1.3: Successfully uninstalled setuptools-46.1.3 Successfully installed Jinja2-2.11.1 MarkupSafe-1.1.1 Pygments-2.3.1 alabaster-0.7.12 babel-2.8.0 certifi-2019.11.28 chardet-3.0.4 commonmark-0.8.1 docutils-0.14 future-0.18.2 idna-2.9 imagesize-1.2.0 mock-1.0.1 packaging-20.3 pillow-5.4.1 pyparsing-2.4.6 pytz-2019.3 readthedocs-sphinx-ext-1.0.1 recommonmark-0.5.0 requests-2.23.0 setuptools-41.0.1 six-1.14.0 snowballstemmer-2.0.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-websupport-1.2.1 urllib3-1.25.8 [rtd-command-info] start-time: 2020-03-26T02:37:46.037457Z, end-time: 2020-03-26T02:38:05.092828Z, duration: 19, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r requirements.txt Collecting cmake>=3.11.0 Downloading cmake-3.16.3-py3-none-manylinux2010_x86_64.whl (17.0 MB) Collecting cython>=0.29 Downloading Cython-0.29.16-cp37-cp37m-manylinux1_x86_64.whl (2.1 MB) Collecting numpy==1.16.* Downloading numpy-1.16.6-cp37-cp37m-manylinux1_x86_64.whl (17.3 MB) Requirement already satisfied: setuptools>=18.0.1 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 4)) (41.0.1) Collecting setuptools-scm>=1.5.4 Downloading setuptools_scm-3.5.0-py2.py3-none-any.whl (26 kB) Requirement already satisfied: wheel>=0.30 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 6)) (0.34.2) Collecting psutil Downloading psutil-5.7.0.tar.gz (449 kB) Building wheels for collected packages: psutil Building wheel for psutil (setup.py): started Building wheel for psutil (setup.py): finished with status 'done' Created wheel for psutil: filename=psutil-5.7.0-cp37-cp37m-linux_x86_64.whl size=276471 sha256=b2a610ee92d7dd3ba15d5ba2dca76abf614753eddc8ecc81279715263dff7034 Stored in directory: /tmp/pip-ephem-wheel-cache-yq29547q/wheels/b6/e7/50/aee9cc966163d74430f13f208171dee22f11efa4a4a826661c Successfully built psutil Installing collected packages: cmake, cython, numpy, setuptools-scm, psutil Successfully installed cmake-3.16.3 cython-0.29.16 numpy-1.16.6 psutil-5.7.0 setuptools-scm-3.5.0 [rtd-command-info] start-time: 2020-03-26T02:38:05.258777Z, end-time: 2020-03-26T03:37:23.007888Z, duration: 3557, exit-code: 137 python ./setup.py install --force libtiledb_exists checking 'library_dirs': [] libtiledb_exists found: 'None' running install running bdist_egg GNU Make 4.1 Built for x86_64-pc-linux-gnu Copyright (C) 1988-2014 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. -- The C compiler identification is GNU 7.4.0 -- The CXX compiler identification is GNU 7.4.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Starting TileDB superbuild. -- Found Bzip2: /usr/lib/x86_64-linux-gnu/libbz2.so -- Could NOT find LZ4 (missing: LZ4_LIBRARIES LZ4_INCLUDE_DIR) -- Adding LZ4 as an external project -- Could NOT find Spdlog (missing: SPDLOG_INCLUDE_DIR) -- Adding Spdlog as an external project -- Found Zlib: /usr/lib/x86_64-linux-gnu/libz.so -- Could NOT find Zstd (missing: ZSTD_LIBRARIES ZSTD_INCLUDE_DIR) -- Adding Zstd as an external project -- Found OpenSSL: /usr/lib/x86_64-linux-gnu/libssl.so -- OpenSSL crypto: /usr/lib/x86_64-linux-gnu/libcrypto.so -- root: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/install;/usr/local/opt/openssl -- Could NOT find CURL (missing: CURL_LIBRARY CURL_INCLUDE_DIR) -- Could NOT find Curl (missing: CURL_LIBRARIES CURL_INCLUDE_DIR) -- Adding Curl as an external project CMake Warning at cmake/Modules/FindCurl_EP.cmake:106 (message): TileDB FindOpenSSL_EP did not set TILEDB_OPENSSL_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) CMake Warning at cmake/Modules/FindCurl_EP.cmake:118 (message): TileDB FindZlib_EP did not set TILEDB_ZLIB_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) -- Could NOT find AWSSDK -- Adding AWSSDK as an external project -- Could NOT find TBB (missing: TBB_LIBRARIES TBB_INCLUDE_DIR) -- Adding TBB as an external project -- Not found clang-tidy -- Not found clang-format -- Found Doxygen: /usr/bin/doxygen (found version "1.8.13") found components: doxygen dot -- Install prefix is /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/dist -- Configuring done -- Generating done -- Build files have been written to: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build Scanning dependencies of target ep_spdlog [ 1%] Creating directories for 'ep_spdlog' [ 3%] Performing download step (download, verify and extract) for 'ep_spdlog' -- ep_spdlog download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_spdlog-stamp/ep_spdlog-download-*.log [ 5%] No patch step for 'ep_spdlog' [ 7%] No update step for 'ep_spdlog' [ 8%] No configure step for 'ep_spdlog' [ 10%] No build step for 'ep_spdlog' [ 12%] No install step for 'ep_spdlog' [ 14%] Completed 'ep_spdlog' [ 14%] Built target ep_spdlog Scanning dependencies of target ep_curl [ 16%] Creating directories for 'ep_curl' [ 17%] Performing download step (download, verify and extract) for 'ep_curl' -- ep_curl download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-download-*.log [ 19%] No patch step for 'ep_curl' [ 21%] No update step for 'ep_curl' [ 23%] Performing configure step for 'ep_curl' -- ep_curl configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-configure-*.log [ 25%] Performing build step for 'ep_curl' -- ep_curl build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-build-*.log [ 26%] Performing install step for 'ep_curl' -- ep_curl install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-install-*.log [ 28%] Completed 'ep_curl' [ 28%] Built target ep_curl Scanning dependencies of target ep_lz4 [ 30%] Creating directories for 'ep_lz4' [ 32%] Performing download step (download, verify and extract) for 'ep_lz4' -- ep_lz4 download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_lz4-stamp/ep_lz4-download-*.log [ 33%] No patch step for 'ep_lz4' [ 35%] No update step for 'ep_lz4' [ 37%] Performing configure step for 'ep_lz4' -- ep_lz4 configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_lz4-stamp/ep_lz4-configure-*.log [ 39%] Performing build step for 'ep_lz4' -- ep_lz4 build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_lz4-stamp/ep_lz4-build-*.log [ 41%] Performing install step for 'ep_lz4' -- ep_lz4 install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_lz4-stamp/ep_lz4-install-*.log [ 42%] Completed 'ep_lz4' [ 42%] Built target ep_lz4 Scanning dependencies of target ep_zstd [ 44%] Creating directories for 'ep_zstd' [ 46%] Performing download step (download, verify and extract) for 'ep_zstd' -- ep_zstd download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-download-*.log [ 48%] No patch step for 'ep_zstd' [ 50%] No update step for 'ep_zstd' [ 51%] Performing configure step for 'ep_zstd' -- ep_zstd configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-configure-*.log [ 53%] Performing build step for 'ep_zstd' -- ep_zstd build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-build-*.log [ 55%] Performing install step for 'ep_zstd' -- ep_zstd install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-install-*.log [ 57%] Completed 'ep_zstd' [ 57%] Built target ep_zstd Scanning dependencies of target ep_tbb [ 58%] Creating directories for 'ep_tbb' [ 60%] Performing download step (download, verify and extract) for 'ep_tbb' -- ep_tbb download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_tbb-stamp/ep_tbb-download-*.log [ 62%] No patch step for 'ep_tbb' [ 64%] No update step for 'ep_tbb' [ 66%] No configure step for 'ep_tbb' [ 67%] No build step for 'ep_tbb' [ 69%] No install step for 'ep_tbb' [ 71%] Completed 'ep_tbb' [ 71%] Built target ep_tbb Scanning dependencies of target ep_awssdk [ 73%] Creating directories for 'ep_awssdk' [ 75%] Performing download step (download, verify and extract) for 'ep_awssdk' -- ep_awssdk download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-download-*.log [ 76%] No patch step for 'ep_awssdk' [ 78%] No update step for 'ep_awssdk' [ 80%] Performing configure step for 'ep_awssdk' -- ep_awssdk configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-configure-*.log [ 82%] Performing build step for 'ep_awssdk' Command killed due to excessive memory consumption [rtd-command-info] start-time: 2020-03-26T03:37:21.582559Z, end-time: 2020-03-26T03:37:30.216332Z, duration: 8, exit-code: 0 git clone --no-single-branch --depth 50 https://github.com/TileDB-Inc/TileDB-Py.git . Cloning into '.'... [rtd-command-info] start-time: 2020-03-26T03:37:30.627077Z, end-time: 2020-03-26T03:37:30.957081Z, duration: 0, exit-code: 0 git checkout --force de2aff00b97498420199a9d16c8375df70e94780 Note: checking out 'de2aff00b97498420199a9d16c8375df70e94780'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at de2aff0 Add error check for libtiledb build validity in setup.py [rtd-command-info] start-time: 2020-03-26T03:37:31.121869Z, end-time: 2020-03-26T03:37:31.441379Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2020-03-26T03:37:32.958819Z, end-time: 2020-03-26T03:37:53.853684Z, duration: 20, exit-code: 0 python3.7 -mvirtualenv Using base prefix '/home/docs/.pyenv/versions/3.7.3' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2020-03-26T03:37:54.021073Z, end-time: 2020-03-26T03:37:55.038715Z, duration: 1, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip Requirement already up-to-date: pip in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (20.0.2) [rtd-command-info] start-time: 2020-03-26T03:37:55.192549Z, end-time: 2020-03-26T03:38:08.686781Z, duration: 13, exit-code: 0 python -m pip install --upgrade --no-cache-dir Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1 Collecting Pygments==2.3.1 Downloading Pygments-2.3.1-py2.py3-none-any.whl (849 kB) Collecting setuptools==41.0.1 Downloading setuptools-41.0.1-py2.py3-none-any.whl (575 kB) Collecting docutils==0.14 Downloading docutils-0.14-py3-none-any.whl (543 kB) Collecting mock==1.0.1 Downloading mock-1.0.1.tar.gz (818 kB) Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.5-py2.py3-none-any.whl (3.1 MB) Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) Collecting readthedocs-sphinx-ext<1.1 Downloading readthedocs_sphinx_ext-1.0.1-py2.py3-none-any.whl (14 kB) Collecting future Downloading future-0.18.2.tar.gz (829 kB) Collecting packaging Downloading packaging-20.3-py2.py3-none-any.whl (37 kB) Collecting babel!=2.0,>=1.3 Downloading Babel-2.8.0-py2.py3-none-any.whl (8.6 MB) Collecting imagesize Downloading imagesize-1.2.0-py2.py3-none-any.whl (4.8 kB) Collecting requests>=2.0.0 Downloading requests-2.23.0-py2.py3-none-any.whl (58 kB) Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.0.0-py2.py3-none-any.whl (97 kB) Collecting sphinxcontrib-websupport Downloading sphinxcontrib_websupport-1.2.1-py2.py3-none-any.whl (39 kB) Collecting six>=1.5 Downloading six-1.14.0-py2.py3-none-any.whl (10 kB) Collecting Jinja2>=2.3 Downloading Jinja2-2.11.1-py2.py3-none-any.whl (126 kB) Collecting pyparsing>=2.0.2 Downloading pyparsing-2.4.6-py2.py3-none-any.whl (67 kB) Collecting pytz>=2015.7 Downloading pytz-2019.3-py2.py3-none-any.whl (509 kB) Collecting certifi>=2017.4.17 Downloading certifi-2019.11.28-py2.py3-none-any.whl (156 kB) Collecting chardet<4,>=3.0.2 Downloading chardet-3.0.4-py2.py3-none-any.whl (133 kB) Collecting urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 Downloading urllib3-1.25.8-py2.py3-none-any.whl (125 kB) Collecting idna<3,>=2.5 Downloading idna-2.9-py2.py3-none-any.whl (58 kB) Collecting MarkupSafe>=0.23 Downloading MarkupSafe-1.1.1-cp37-cp37m-manylinux1_x86_64.whl (27 kB) Building wheels for collected packages: mock, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23754 sha256=f99a06847191beb2a128b34a35073bb14a7955e17cad07029665aec570dd91c5 Stored in directory: /tmp/pip-ephem-wheel-cache-9aw2knj5/wheels/16/03/37/f0a64ab894c9102906f192db1a4071b7592292ad661563c69b Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491058 sha256=3b3f432c23d59afa3576d3ebd0f625012c9256470f3baef089c71cd3ecdccb4e Stored in directory: /tmp/pip-ephem-wheel-cache-9aw2knj5/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0 Successfully built mock future Installing collected packages: Pygments, setuptools, docutils, mock, pillow, alabaster, future, commonmark, pyparsing, six, packaging, pytz, babel, imagesize, certifi, chardet, urllib3, idna, requests, snowballstemmer, sphinxcontrib-websupport, MarkupSafe, Jinja2, sphinx, recommonmark, sphinx-rtd-theme, readthedocs-sphinx-ext Attempting uninstall: setuptools Found existing installation: setuptools 46.1.3 Uninstalling setuptools-46.1.3: Successfully uninstalled setuptools-46.1.3 Successfully installed Jinja2-2.11.1 MarkupSafe-1.1.1 Pygments-2.3.1 alabaster-0.7.12 babel-2.8.0 certifi-2019.11.28 chardet-3.0.4 commonmark-0.8.1 docutils-0.14 future-0.18.2 idna-2.9 imagesize-1.2.0 mock-1.0.1 packaging-20.3 pillow-5.4.1 pyparsing-2.4.6 pytz-2019.3 readthedocs-sphinx-ext-1.0.1 recommonmark-0.5.0 requests-2.23.0 setuptools-41.0.1 six-1.14.0 snowballstemmer-2.0.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-websupport-1.2.1 urllib3-1.25.8 [rtd-command-info] start-time: 2020-03-26T03:38:08.845777Z, end-time: 2020-03-26T03:38:39.649306Z, duration: 30, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r requirements.txt Collecting cmake>=3.11.0 Downloading cmake-3.16.3-py3-none-manylinux2010_x86_64.whl (17.0 MB) Collecting cython>=0.29 Downloading Cython-0.29.16-cp37-cp37m-manylinux1_x86_64.whl (2.1 MB) Collecting numpy==1.16.* Downloading numpy-1.16.6-cp37-cp37m-manylinux1_x86_64.whl (17.3 MB) Requirement already satisfied: setuptools>=18.0.1 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 4)) (41.0.1) Collecting setuptools-scm>=1.5.4 Downloading setuptools_scm-3.5.0-py2.py3-none-any.whl (26 kB) Requirement already satisfied: wheel>=0.30 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 6)) (0.34.2) Collecting psutil Downloading psutil-5.7.0.tar.gz (449 kB) Building wheels for collected packages: psutil Building wheel for psutil (setup.py): started Building wheel for psutil (setup.py): finished with status 'done' Created wheel for psutil: filename=psutil-5.7.0-cp37-cp37m-linux_x86_64.whl size=276471 sha256=f1e12c2fcea6a6a29a4c9eaf908c58f688893fb3411086a5e0388eeed57588bf Stored in directory: /tmp/pip-ephem-wheel-cache-yv25ixpj/wheels/b6/e7/50/aee9cc966163d74430f13f208171dee22f11efa4a4a826661c Successfully built psutil Installing collected packages: cmake, cython, numpy, setuptools-scm, psutil Successfully installed cmake-3.16.3 cython-0.29.16 numpy-1.16.6 psutil-5.7.0 setuptools-scm-3.5.0 [rtd-command-info] start-time: 2020-03-26T03:38:39.808053Z, end-time: 2020-03-26T04:37:36.052791Z, duration: 3536, exit-code: 137 python ./setup.py install --force libtiledb_exists checking 'library_dirs': [] libtiledb_exists found: 'None' running install running bdist_egg GNU Make 4.1 Built for x86_64-pc-linux-gnu Copyright (C) 1988-2014 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. -- The C compiler identification is GNU 7.4.0 -- The CXX compiler identification is GNU 7.4.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Starting TileDB superbuild. -- Found Bzip2: /usr/lib/x86_64-linux-gnu/libbz2.so -- Could NOT find LZ4 (missing: LZ4_LIBRARIES LZ4_INCLUDE_DIR) -- Adding LZ4 as an external project -- Could NOT find Spdlog (missing: SPDLOG_INCLUDE_DIR) -- Adding Spdlog as an external project -- Found Zlib: /usr/lib/x86_64-linux-gnu/libz.so -- Could NOT find Zstd (missing: ZSTD_LIBRARIES ZSTD_INCLUDE_DIR) -- Adding Zstd as an external project -- Found OpenSSL: /usr/lib/x86_64-linux-gnu/libssl.so -- OpenSSL crypto: /usr/lib/x86_64-linux-gnu/libcrypto.so -- root: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/install;/usr/local/opt/openssl -- Could NOT find CURL (missing: CURL_LIBRARY CURL_INCLUDE_DIR) -- Could NOT find Curl (missing: CURL_LIBRARIES CURL_INCLUDE_DIR) -- Adding Curl as an external project CMake Warning at cmake/Modules/FindCurl_EP.cmake:106 (message): TileDB FindOpenSSL_EP did not set TILEDB_OPENSSL_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) CMake Warning at cmake/Modules/FindCurl_EP.cmake:118 (message): TileDB FindZlib_EP did not set TILEDB_ZLIB_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) -- Could NOT find AWSSDK -- Adding AWSSDK as an external project -- Could NOT find TBB (missing: TBB_LIBRARIES TBB_INCLUDE_DIR) -- Adding TBB as an external project -- Not found clang-tidy -- Not found clang-format -- Found Doxygen: /usr/bin/doxygen (found version "1.8.13") found components: doxygen dot -- Install prefix is /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/dist -- Configuring done -- Generating done -- Build files have been written to: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build Scanning dependencies of target ep_zstd [ 1%] Creating directories for 'ep_zstd' [ 3%] Performing download step (download, verify and extract) for 'ep_zstd' -- ep_zstd download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-download-*.log [ 5%] No patch step for 'ep_zstd' [ 7%] No update step for 'ep_zstd' [ 8%] Performing configure step for 'ep_zstd' -- ep_zstd configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-configure-*.log [ 10%] Performing build step for 'ep_zstd' -- ep_zstd build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-build-*.log [ 12%] Performing install step for 'ep_zstd' -- ep_zstd install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-install-*.log [ 14%] Completed 'ep_zstd' [ 14%] Built target ep_zstd Scanning dependencies of target ep_spdlog [ 16%] Creating directories for 'ep_spdlog' [ 17%] Performing download step (download, verify and extract) for 'ep_spdlog' -- ep_spdlog download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_spdlog-stamp/ep_spdlog-download-*.log [ 19%] No patch step for 'ep_spdlog' [ 21%] No update step for 'ep_spdlog' [ 23%] No configure step for 'ep_spdlog' [ 25%] No build step for 'ep_spdlog' [ 26%] No install step for 'ep_spdlog' [ 28%] Completed 'ep_spdlog' [ 28%] Built target ep_spdlog Scanning dependencies of target ep_tbb [ 30%] Creating directories for 'ep_tbb' [ 32%] Performing download step (download, verify and extract) for 'ep_tbb' -- ep_tbb download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_tbb-stamp/ep_tbb-download-*.log [ 33%] No patch step for 'ep_tbb' [ 35%] No update step for 'ep_tbb' [ 37%] No configure step for 'ep_tbb' [ 39%] No build step for 'ep_tbb' [ 41%] No install step for 'ep_tbb' [ 42%] Completed 'ep_tbb' [ 42%] Built target ep_tbb Scanning dependencies of target ep_curl [ 44%] Creating directories for 'ep_curl' [ 46%] Performing download step (download, verify and extract) for 'ep_curl' -- ep_curl download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-download-*.log [ 48%] No patch step for 'ep_curl' [ 50%] No update step for 'ep_curl' [ 51%] Performing configure step for 'ep_curl' -- ep_curl configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-configure-*.log [ 53%] Performing build step for 'ep_curl' -- ep_curl build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-build-*.log [ 55%] Performing install step for 'ep_curl' -- ep_curl install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-install-*.log [ 57%] Completed 'ep_curl' [ 57%] Built target ep_curl Scanning dependencies of target ep_awssdk [ 58%] Creating directories for 'ep_awssdk' [ 60%] Performing download step (download, verify and extract) for 'ep_awssdk' -- ep_awssdk download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-download-*.log [ 62%] No patch step for 'ep_awssdk' [ 64%] No update step for 'ep_awssdk' [ 66%] Performing configure step for 'ep_awssdk' -- ep_awssdk configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-configure-*.log [ 67%] Performing build step for 'ep_awssdk' Command killed due to excessive memory consumption [rtd-command-info] start-time: 2020-03-26T04:37:14.401275Z, end-time: 2020-03-26T04:37:15.632867Z, duration: 1, exit-code: 0 git clone --no-single-branch --depth 50 https://github.com/TileDB-Inc/TileDB-Py.git . Cloning into '.'... [rtd-command-info] start-time: 2020-03-26T04:37:16.039633Z, end-time: 2020-03-26T04:37:16.372503Z, duration: 0, exit-code: 0 git checkout --force de2aff00b97498420199a9d16c8375df70e94780 Note: checking out 'de2aff00b97498420199a9d16c8375df70e94780'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at de2aff0 Add error check for libtiledb build validity in setup.py [rtd-command-info] start-time: 2020-03-26T04:37:16.526006Z, end-time: 2020-03-26T04:37:16.854982Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2020-03-26T04:37:18.275012Z, end-time: 2020-03-26T04:37:23.071820Z, duration: 4, exit-code: 0 python3.7 -mvirtualenv Using base prefix '/home/docs/.pyenv/versions/3.7.3' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2020-03-26T04:37:23.247780Z, end-time: 2020-03-26T04:37:24.273185Z, duration: 1, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip Requirement already up-to-date: pip in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (20.0.2) [rtd-command-info] start-time: 2020-03-26T04:37:24.429498Z, end-time: 2020-03-26T04:37:36.723007Z, duration: 12, exit-code: 0 python -m pip install --upgrade --no-cache-dir Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1 Collecting Pygments==2.3.1 Downloading Pygments-2.3.1-py2.py3-none-any.whl (849 kB) Collecting setuptools==41.0.1 Downloading setuptools-41.0.1-py2.py3-none-any.whl (575 kB) Collecting docutils==0.14 Downloading docutils-0.14-py3-none-any.whl (543 kB) Collecting mock==1.0.1 Downloading mock-1.0.1.tar.gz (818 kB) Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.5-py2.py3-none-any.whl (3.1 MB) Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) Collecting readthedocs-sphinx-ext<1.1 Downloading readthedocs_sphinx_ext-1.0.1-py2.py3-none-any.whl (14 kB) Collecting future Downloading future-0.18.2.tar.gz (829 kB) Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.0.0-py2.py3-none-any.whl (97 kB) Collecting sphinxcontrib-websupport Downloading sphinxcontrib_websupport-1.2.1-py2.py3-none-any.whl (39 kB) Collecting imagesize Downloading imagesize-1.2.0-py2.py3-none-any.whl (4.8 kB) Collecting requests>=2.0.0 Downloading requests-2.23.0-py2.py3-none-any.whl (58 kB) Collecting packaging Downloading packaging-20.3-py2.py3-none-any.whl (37 kB) Collecting babel!=2.0,>=1.3 Downloading Babel-2.8.0-py2.py3-none-any.whl (8.6 MB) Collecting six>=1.5 Downloading six-1.14.0-py2.py3-none-any.whl (10 kB) Collecting Jinja2>=2.3 Downloading Jinja2-2.11.1-py2.py3-none-any.whl (126 kB) Collecting chardet<4,>=3.0.2 Downloading chardet-3.0.4-py2.py3-none-any.whl (133 kB) Collecting certifi>=2017.4.17 Downloading certifi-2019.11.28-py2.py3-none-any.whl (156 kB) Collecting urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 Downloading urllib3-1.25.8-py2.py3-none-any.whl (125 kB) Collecting idna<3,>=2.5 Downloading idna-2.9-py2.py3-none-any.whl (58 kB) Collecting pyparsing>=2.0.2 Downloading pyparsing-2.4.6-py2.py3-none-any.whl (67 kB) Collecting pytz>=2015.7 Downloading pytz-2019.3-py2.py3-none-any.whl (509 kB) Collecting MarkupSafe>=0.23 Downloading MarkupSafe-1.1.1-cp37-cp37m-manylinux1_x86_64.whl (27 kB) Building wheels for collected packages: mock, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23754 sha256=8547402a930c5235e692c3f2832333ef58b8c9daf0764ecf512c55024fe3427c Stored in directory: /tmp/pip-ephem-wheel-cache-b_qe7lip/wheels/16/03/37/f0a64ab894c9102906f192db1a4071b7592292ad661563c69b Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491058 sha256=10fcfcb02c46e91e5de0089f1170ed43e8d4c7afb1a76c548ad8057905e7e070 Stored in directory: /tmp/pip-ephem-wheel-cache-b_qe7lip/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0 Successfully built mock future Installing collected packages: Pygments, setuptools, docutils, mock, pillow, alabaster, future, commonmark, snowballstemmer, sphinxcontrib-websupport, imagesize, chardet, certifi, urllib3, idna, requests, pyparsing, six, packaging, pytz, babel, MarkupSafe, Jinja2, sphinx, recommonmark, sphinx-rtd-theme, readthedocs-sphinx-ext Attempting uninstall: setuptools Found existing installation: setuptools 46.1.3 Uninstalling setuptools-46.1.3: Successfully uninstalled setuptools-46.1.3 Successfully installed Jinja2-2.11.1 MarkupSafe-1.1.1 Pygments-2.3.1 alabaster-0.7.12 babel-2.8.0 certifi-2019.11.28 chardet-3.0.4 commonmark-0.8.1 docutils-0.14 future-0.18.2 idna-2.9 imagesize-1.2.0 mock-1.0.1 packaging-20.3 pillow-5.4.1 pyparsing-2.4.6 pytz-2019.3 readthedocs-sphinx-ext-1.0.1 recommonmark-0.5.0 requests-2.23.0 setuptools-41.0.1 six-1.14.0 snowballstemmer-2.0.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-websupport-1.2.1 urllib3-1.25.8 [rtd-command-info] start-time: 2020-03-26T04:37:37.281781Z, end-time: 2020-03-26T04:37:49.034407Z, duration: 11, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r requirements.txt Collecting cmake>=3.11.0 Downloading cmake-3.16.3-py3-none-manylinux2010_x86_64.whl (17.0 MB) Collecting cython>=0.29 Downloading Cython-0.29.16-cp37-cp37m-manylinux1_x86_64.whl (2.1 MB) Collecting numpy==1.16.* Downloading numpy-1.16.6-cp37-cp37m-manylinux1_x86_64.whl (17.3 MB) Requirement already satisfied: setuptools>=18.0.1 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 4)) (41.0.1) Collecting setuptools-scm>=1.5.4 Downloading setuptools_scm-3.5.0-py2.py3-none-any.whl (26 kB) Requirement already satisfied: wheel>=0.30 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 6)) (0.34.2) Collecting psutil Downloading psutil-5.7.0.tar.gz (449 kB) Building wheels for collected packages: psutil Building wheel for psutil (setup.py): started Building wheel for psutil (setup.py): finished with status 'done' Created wheel for psutil: filename=psutil-5.7.0-cp37-cp37m-linux_x86_64.whl size=276469 sha256=adb8dc6aae7366161af595d635c3c1f934c9c99a024222484159b7f0b62b0bbb Stored in directory: /tmp/pip-ephem-wheel-cache-_ojev5lg/wheels/b6/e7/50/aee9cc966163d74430f13f208171dee22f11efa4a4a826661c Successfully built psutil Installing collected packages: cmake, cython, numpy, setuptools-scm, psutil Successfully installed cmake-3.16.3 cython-0.29.16 numpy-1.16.6 psutil-5.7.0 setuptools-scm-3.5.0 [rtd-command-info] start-time: 2020-03-26T04:37:49.202427Z, end-time: 2020-03-26T05:37:18.363427Z, duration: 3569, exit-code: 137 python ./setup.py install --force libtiledb_exists checking 'library_dirs': [] libtiledb_exists found: 'None' running install running bdist_egg GNU Make 4.1 Built for x86_64-pc-linux-gnu Copyright (C) 1988-2014 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. -- The C compiler identification is GNU 7.4.0 -- The CXX compiler identification is GNU 7.4.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Starting TileDB superbuild. -- Found Bzip2: /usr/lib/x86_64-linux-gnu/libbz2.so -- Could NOT find LZ4 (missing: LZ4_LIBRARIES LZ4_INCLUDE_DIR) -- Adding LZ4 as an external project -- Could NOT find Spdlog (missing: SPDLOG_INCLUDE_DIR) -- Adding Spdlog as an external project -- Found Zlib: /usr/lib/x86_64-linux-gnu/libz.so -- Could NOT find Zstd (missing: ZSTD_LIBRARIES ZSTD_INCLUDE_DIR) -- Adding Zstd as an external project -- Found OpenSSL: /usr/lib/x86_64-linux-gnu/libssl.so -- OpenSSL crypto: /usr/lib/x86_64-linux-gnu/libcrypto.so -- root: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/install;/usr/local/opt/openssl -- Could NOT find CURL (missing: CURL_LIBRARY CURL_INCLUDE_DIR) -- Could NOT find Curl (missing: CURL_LIBRARIES CURL_INCLUDE_DIR) -- Adding Curl as an external project CMake Warning at cmake/Modules/FindCurl_EP.cmake:106 (message): TileDB FindOpenSSL_EP did not set TILEDB_OPENSSL_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) CMake Warning at cmake/Modules/FindCurl_EP.cmake:118 (message): TileDB FindZlib_EP did not set TILEDB_ZLIB_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) -- Could NOT find AWSSDK -- Adding AWSSDK as an external project -- Could NOT find TBB (missing: TBB_LIBRARIES TBB_INCLUDE_DIR) -- Adding TBB as an external project -- Not found clang-tidy -- Not found clang-format -- Found Doxygen: /usr/bin/doxygen (found version "1.8.13") found components: doxygen dot -- Install prefix is /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/dist -- Configuring done -- Generating done -- Build files have been written to: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build Scanning dependencies of target ep_spdlog [ 1%] Creating directories for 'ep_spdlog' [ 3%] Performing download step (download, verify and extract) for 'ep_spdlog' -- ep_spdlog download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_spdlog-stamp/ep_spdlog-download-*.log [ 5%] No patch step for 'ep_spdlog' [ 7%] No update step for 'ep_spdlog' [ 8%] No configure step for 'ep_spdlog' [ 10%] No build step for 'ep_spdlog' [ 12%] No install step for 'ep_spdlog' [ 14%] Completed 'ep_spdlog' [ 14%] Built target ep_spdlog Scanning dependencies of target ep_curl [ 16%] Creating directories for 'ep_curl' [ 17%] Performing download step (download, verify and extract) for 'ep_curl' -- ep_curl download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-download-*.log [ 19%] No patch step for 'ep_curl' [ 21%] No update step for 'ep_curl' [ 23%] Performing configure step for 'ep_curl' -- ep_curl configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-configure-*.log [ 25%] Performing build step for 'ep_curl' -- ep_curl build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-build-*.log [ 26%] Performing install step for 'ep_curl' -- ep_curl install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-install-*.log [ 28%] Completed 'ep_curl' [ 28%] Built target ep_curl Scanning dependencies of target ep_lz4 [ 30%] Creating directories for 'ep_lz4' [ 32%] Performing download step (download, verify and extract) for 'ep_lz4' -- ep_lz4 download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_lz4-stamp/ep_lz4-download-*.log [ 33%] No patch step for 'ep_lz4' [ 35%] No update step for 'ep_lz4' [ 37%] Performing configure step for 'ep_lz4' -- ep_lz4 configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_lz4-stamp/ep_lz4-configure-*.log [ 39%] Performing build step for 'ep_lz4' -- ep_lz4 build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_lz4-stamp/ep_lz4-build-*.log [ 41%] Performing install step for 'ep_lz4' -- ep_lz4 install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_lz4-stamp/ep_lz4-install-*.log [ 42%] Completed 'ep_lz4' [ 42%] Built target ep_lz4 Scanning dependencies of target ep_zstd [ 44%] Creating directories for 'ep_zstd' [ 46%] Performing download step (download, verify and extract) for 'ep_zstd' -- ep_zstd download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-download-*.log [ 48%] No patch step for 'ep_zstd' [ 50%] No update step for 'ep_zstd' [ 51%] Performing configure step for 'ep_zstd' -- ep_zstd configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-configure-*.log [ 53%] Performing build step for 'ep_zstd' -- ep_zstd build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-build-*.log [ 55%] Performing install step for 'ep_zstd' -- ep_zstd install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-install-*.log [ 57%] Completed 'ep_zstd' [ 57%] Built target ep_zstd Scanning dependencies of target ep_tbb [ 58%] Creating directories for 'ep_tbb' [ 60%] Performing download step (download, verify and extract) for 'ep_tbb' -- ep_tbb download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_tbb-stamp/ep_tbb-download-*.log [ 62%] No patch step for 'ep_tbb' [ 64%] No update step for 'ep_tbb' [ 66%] No configure step for 'ep_tbb' [ 67%] No build step for 'ep_tbb' [ 69%] No install step for 'ep_tbb' [ 71%] Completed 'ep_tbb' [ 71%] Built target ep_tbb Scanning dependencies of target ep_awssdk [ 73%] Creating directories for 'ep_awssdk' [ 75%] Performing download step (download, verify and extract) for 'ep_awssdk' -- ep_awssdk download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-download-*.log [ 76%] No patch step for 'ep_awssdk' [ 78%] No update step for 'ep_awssdk' [ 80%] Performing configure step for 'ep_awssdk' -- ep_awssdk configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-configure-*.log [ 82%] Performing build step for 'ep_awssdk' Command killed due to excessive memory consumption [rtd-command-info] start-time: 2020-03-26T05:37:14.614759Z, end-time: 2020-03-26T05:37:18.106865Z, duration: 3, exit-code: 0 git clone --no-single-branch --depth 50 https://github.com/TileDB-Inc/TileDB-Py.git . Cloning into '.'... [rtd-command-info] start-time: 2020-03-26T05:37:18.523702Z, end-time: 2020-03-26T05:37:18.842438Z, duration: 0, exit-code: 0 git checkout --force de2aff00b97498420199a9d16c8375df70e94780 Note: checking out 'de2aff00b97498420199a9d16c8375df70e94780'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at de2aff0 Add error check for libtiledb build validity in setup.py [rtd-command-info] start-time: 2020-03-26T05:37:18.995411Z, end-time: 2020-03-26T05:37:19.301737Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2020-03-26T05:37:20.720058Z, end-time: 2020-03-26T05:37:25.337072Z, duration: 4, exit-code: 0 python3.7 -mvirtualenv Using base prefix '/home/docs/.pyenv/versions/3.7.3' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2020-03-26T05:37:25.496753Z, end-time: 2020-03-26T05:37:26.455277Z, duration: 0, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip Requirement already up-to-date: pip in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (20.0.2) [rtd-command-info] start-time: 2020-03-26T05:37:26.608506Z, end-time: 2020-03-26T05:37:38.123503Z, duration: 11, exit-code: 0 python -m pip install --upgrade --no-cache-dir Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1 Collecting Pygments==2.3.1 Downloading Pygments-2.3.1-py2.py3-none-any.whl (849 kB) Collecting setuptools==41.0.1 Downloading setuptools-41.0.1-py2.py3-none-any.whl (575 kB) Collecting docutils==0.14 Downloading docutils-0.14-py3-none-any.whl (543 kB) Collecting mock==1.0.1 Downloading mock-1.0.1.tar.gz (818 kB) Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.5-py2.py3-none-any.whl (3.1 MB) Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) Collecting readthedocs-sphinx-ext<1.1 Downloading readthedocs_sphinx_ext-1.0.1-py2.py3-none-any.whl (14 kB) Collecting future Downloading future-0.18.2.tar.gz (829 kB) Collecting imagesize Downloading imagesize-1.2.0-py2.py3-none-any.whl (4.8 kB) Collecting Jinja2>=2.3 Downloading Jinja2-2.11.1-py2.py3-none-any.whl (126 kB) Collecting sphinxcontrib-websupport Downloading sphinxcontrib_websupport-1.2.1-py2.py3-none-any.whl (39 kB) Collecting babel!=2.0,>=1.3 Downloading Babel-2.8.0-py2.py3-none-any.whl (8.6 MB) Collecting requests>=2.0.0 Downloading requests-2.23.0-py2.py3-none-any.whl (58 kB) Collecting packaging Downloading packaging-20.3-py2.py3-none-any.whl (37 kB) Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.0.0-py2.py3-none-any.whl (97 kB) Collecting six>=1.5 Downloading six-1.14.0-py2.py3-none-any.whl (10 kB) Collecting MarkupSafe>=0.23 Downloading MarkupSafe-1.1.1-cp37-cp37m-manylinux1_x86_64.whl (27 kB) Collecting pytz>=2015.7 Downloading pytz-2019.3-py2.py3-none-any.whl (509 kB) Collecting idna<3,>=2.5 Downloading idna-2.9-py2.py3-none-any.whl (58 kB) Collecting chardet<4,>=3.0.2 Downloading chardet-3.0.4-py2.py3-none-any.whl (133 kB) Collecting urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 Downloading urllib3-1.25.8-py2.py3-none-any.whl (125 kB) Collecting certifi>=2017.4.17 Downloading certifi-2019.11.28-py2.py3-none-any.whl (156 kB) Collecting pyparsing>=2.0.2 Downloading pyparsing-2.4.6-py2.py3-none-any.whl (67 kB) Building wheels for collected packages: mock, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23754 sha256=f6cfc7e7f7624d754545419a52fb54ec8e92271536b95eabdf620ed8b83d208d Stored in directory: /tmp/pip-ephem-wheel-cache-x4nmcng_/wheels/16/03/37/f0a64ab894c9102906f192db1a4071b7592292ad661563c69b Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491058 sha256=2857b5cb9f84285405f51cd98cc79bc6496bc0c93b93a3fdf2a2a7bf20116f32 Stored in directory: /tmp/pip-ephem-wheel-cache-x4nmcng_/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0 Successfully built mock future Installing collected packages: Pygments, setuptools, docutils, mock, pillow, alabaster, future, commonmark, imagesize, MarkupSafe, Jinja2, sphinxcontrib-websupport, pytz, babel, idna, chardet, urllib3, certifi, requests, six, pyparsing, packaging, snowballstemmer, sphinx, recommonmark, sphinx-rtd-theme, readthedocs-sphinx-ext Attempting uninstall: setuptools Found existing installation: setuptools 46.1.3 Uninstalling setuptools-46.1.3: Successfully uninstalled setuptools-46.1.3 Successfully installed Jinja2-2.11.1 MarkupSafe-1.1.1 Pygments-2.3.1 alabaster-0.7.12 babel-2.8.0 certifi-2019.11.28 chardet-3.0.4 commonmark-0.8.1 docutils-0.14 future-0.18.2 idna-2.9 imagesize-1.2.0 mock-1.0.1 packaging-20.3 pillow-5.4.1 pyparsing-2.4.6 pytz-2019.3 readthedocs-sphinx-ext-1.0.1 recommonmark-0.5.0 requests-2.23.0 setuptools-41.0.1 six-1.14.0 snowballstemmer-2.0.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-websupport-1.2.1 urllib3-1.25.8 [rtd-command-info] start-time: 2020-03-26T05:37:38.280546Z, end-time: 2020-03-26T05:37:49.718641Z, duration: 11, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r requirements.txt Collecting cmake>=3.11.0 Downloading cmake-3.16.3-py3-none-manylinux2010_x86_64.whl (17.0 MB) Collecting cython>=0.29 Downloading Cython-0.29.16-cp37-cp37m-manylinux1_x86_64.whl (2.1 MB) Collecting numpy==1.16.* Downloading numpy-1.16.6-cp37-cp37m-manylinux1_x86_64.whl (17.3 MB) Requirement already satisfied: setuptools>=18.0.1 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 4)) (41.0.1) Collecting setuptools-scm>=1.5.4 Downloading setuptools_scm-3.5.0-py2.py3-none-any.whl (26 kB) Requirement already satisfied: wheel>=0.30 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 6)) (0.34.2) Collecting psutil Downloading psutil-5.7.0.tar.gz (449 kB) Building wheels for collected packages: psutil Building wheel for psutil (setup.py): started Building wheel for psutil (setup.py): finished with status 'done' Created wheel for psutil: filename=psutil-5.7.0-cp37-cp37m-linux_x86_64.whl size=276467 sha256=9546a4c0a673cbf5690f25e0a3855235ab69269470d2a1d11ee5e7b30541b1e7 Stored in directory: /tmp/pip-ephem-wheel-cache-_tqmht72/wheels/b6/e7/50/aee9cc966163d74430f13f208171dee22f11efa4a4a826661c Successfully built psutil Installing collected packages: cmake, cython, numpy, setuptools-scm, psutil Successfully installed cmake-3.16.3 cython-0.29.16 numpy-1.16.6 psutil-5.7.0 setuptools-scm-3.5.0 [rtd-command-info] start-time: 2020-03-26T05:37:49.882978Z, end-time: 2020-03-26T06:37:22.543724Z, duration: 3572, exit-code: 137 python ./setup.py install --force libtiledb_exists checking 'library_dirs': [] libtiledb_exists found: 'None' running install running bdist_egg GNU Make 4.1 Built for x86_64-pc-linux-gnu Copyright (C) 1988-2014 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. -- The C compiler identification is GNU 7.4.0 -- The CXX compiler identification is GNU 7.4.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Starting TileDB superbuild. -- Found Bzip2: /usr/lib/x86_64-linux-gnu/libbz2.so -- Could NOT find LZ4 (missing: LZ4_LIBRARIES LZ4_INCLUDE_DIR) -- Adding LZ4 as an external project -- Could NOT find Spdlog (missing: SPDLOG_INCLUDE_DIR) -- Adding Spdlog as an external project -- Found Zlib: /usr/lib/x86_64-linux-gnu/libz.so -- Could NOT find Zstd (missing: ZSTD_LIBRARIES ZSTD_INCLUDE_DIR) -- Adding Zstd as an external project -- Found OpenSSL: /usr/lib/x86_64-linux-gnu/libssl.so -- OpenSSL crypto: /usr/lib/x86_64-linux-gnu/libcrypto.so -- root: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/install;/usr/local/opt/openssl -- Could NOT find CURL (missing: CURL_LIBRARY CURL_INCLUDE_DIR) -- Could NOT find Curl (missing: CURL_LIBRARIES CURL_INCLUDE_DIR) -- Adding Curl as an external project CMake Warning at cmake/Modules/FindCurl_EP.cmake:106 (message): TileDB FindOpenSSL_EP did not set TILEDB_OPENSSL_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) CMake Warning at cmake/Modules/FindCurl_EP.cmake:118 (message): TileDB FindZlib_EP did not set TILEDB_ZLIB_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) -- Could NOT find AWSSDK -- Adding AWSSDK as an external project -- Could NOT find TBB (missing: TBB_LIBRARIES TBB_INCLUDE_DIR) -- Adding TBB as an external project -- Not found clang-tidy -- Not found clang-format -- Found Doxygen: /usr/bin/doxygen (found version "1.8.13") found components: doxygen dot -- Install prefix is /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/dist -- Configuring done -- Generating done -- Build files have been written to: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build Scanning dependencies of target ep_curl [ 1%] Creating directories for 'ep_curl' [ 3%] Performing download step (download, verify and extract) for 'ep_curl' -- ep_curl download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-download-*.log [ 5%] No patch step for 'ep_curl' [ 7%] No update step for 'ep_curl' [ 8%] Performing configure step for 'ep_curl' -- ep_curl configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-configure-*.log [ 10%] Performing build step for 'ep_curl' -- ep_curl build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-build-*.log [ 12%] Performing install step for 'ep_curl' -- ep_curl install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-install-*.log [ 14%] Completed 'ep_curl' [ 14%] Built target ep_curl Scanning dependencies of target ep_awssdk [ 16%] Creating directories for 'ep_awssdk' [ 17%] Performing download step (download, verify and extract) for 'ep_awssdk' -- ep_awssdk download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-download-*.log [ 19%] No patch step for 'ep_awssdk' [ 21%] No update step for 'ep_awssdk' [ 23%] Performing configure step for 'ep_awssdk' -- ep_awssdk configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-configure-*.log [ 25%] Performing build step for 'ep_awssdk' Command killed due to excessive memory consumption [rtd-command-info] start-time: 2020-03-26T06:37:15.031889Z, end-time: 2020-03-26T06:37:16.450121Z, duration: 1, exit-code: 0 git clone --no-single-branch --depth 50 https://github.com/TileDB-Inc/TileDB-Py.git . Cloning into '.'... [rtd-command-info] start-time: 2020-03-26T06:37:16.878756Z, end-time: 2020-03-26T06:37:17.197461Z, duration: 0, exit-code: 0 git checkout --force de2aff00b97498420199a9d16c8375df70e94780 Note: checking out 'de2aff00b97498420199a9d16c8375df70e94780'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at de2aff0 Add error check for libtiledb build validity in setup.py [rtd-command-info] start-time: 2020-03-26T06:37:17.356131Z, end-time: 2020-03-26T06:37:17.666090Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2020-03-26T06:37:19.149822Z, end-time: 2020-03-26T06:37:23.877218Z, duration: 4, exit-code: 0 python3.7 -mvirtualenv Using base prefix '/home/docs/.pyenv/versions/3.7.3' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2020-03-26T06:37:24.034939Z, end-time: 2020-03-26T06:37:25.025836Z, duration: 0, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip Requirement already up-to-date: pip in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (20.0.2) [rtd-command-info] start-time: 2020-03-26T06:37:25.194168Z, end-time: 2020-03-26T06:37:37.505995Z, duration: 12, exit-code: 0 python -m pip install --upgrade --no-cache-dir Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1 Collecting Pygments==2.3.1 Downloading Pygments-2.3.1-py2.py3-none-any.whl (849 kB) Collecting setuptools==41.0.1 Downloading setuptools-41.0.1-py2.py3-none-any.whl (575 kB) Collecting docutils==0.14 Downloading docutils-0.14-py3-none-any.whl (543 kB) Collecting mock==1.0.1 Downloading mock-1.0.1.tar.gz (818 kB) Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.5-py2.py3-none-any.whl (3.1 MB) Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) Collecting readthedocs-sphinx-ext<1.1 Downloading readthedocs_sphinx_ext-1.0.1-py2.py3-none-any.whl (14 kB) Collecting future Downloading future-0.18.2.tar.gz (829 kB) Collecting imagesize Downloading imagesize-1.2.0-py2.py3-none-any.whl (4.8 kB) Collecting babel!=2.0,>=1.3 Downloading Babel-2.8.0-py2.py3-none-any.whl (8.6 MB) Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.0.0-py2.py3-none-any.whl (97 kB) Collecting sphinxcontrib-websupport Downloading sphinxcontrib_websupport-1.2.1-py2.py3-none-any.whl (39 kB) Collecting Jinja2>=2.3 Downloading Jinja2-2.11.1-py2.py3-none-any.whl (126 kB) Collecting packaging Downloading packaging-20.3-py2.py3-none-any.whl (37 kB) Collecting requests>=2.0.0 Downloading requests-2.23.0-py2.py3-none-any.whl (58 kB) Collecting six>=1.5 Downloading six-1.14.0-py2.py3-none-any.whl (10 kB) Collecting pytz>=2015.7 Downloading pytz-2019.3-py2.py3-none-any.whl (509 kB) Collecting MarkupSafe>=0.23 Downloading MarkupSafe-1.1.1-cp37-cp37m-manylinux1_x86_64.whl (27 kB) Collecting pyparsing>=2.0.2 Downloading pyparsing-2.4.6-py2.py3-none-any.whl (67 kB) Collecting certifi>=2017.4.17 Downloading certifi-2019.11.28-py2.py3-none-any.whl (156 kB) Collecting chardet<4,>=3.0.2 Downloading chardet-3.0.4-py2.py3-none-any.whl (133 kB) Collecting urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 Downloading urllib3-1.25.8-py2.py3-none-any.whl (125 kB) Collecting idna<3,>=2.5 Downloading idna-2.9-py2.py3-none-any.whl (58 kB) Building wheels for collected packages: mock, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23754 sha256=29566ef31f736d30ccee912b0fb18f3b2c6238d562fdd2e55a2a5f96812abc21 Stored in directory: /tmp/pip-ephem-wheel-cache-cqii2niq/wheels/16/03/37/f0a64ab894c9102906f192db1a4071b7592292ad661563c69b Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491058 sha256=ef1c363550cfda03debf84d0cb7bdcb77dc54bc8ee916eacdf1df84399679950 Stored in directory: /tmp/pip-ephem-wheel-cache-cqii2niq/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0 Successfully built mock future Installing collected packages: Pygments, setuptools, docutils, mock, pillow, alabaster, future, commonmark, imagesize, pytz, babel, snowballstemmer, sphinxcontrib-websupport, MarkupSafe, Jinja2, pyparsing, six, packaging, certifi, chardet, urllib3, idna, requests, sphinx, recommonmark, sphinx-rtd-theme, readthedocs-sphinx-ext Attempting uninstall: setuptools Found existing installation: setuptools 46.1.3 Uninstalling setuptools-46.1.3: Successfully uninstalled setuptools-46.1.3 Successfully installed Jinja2-2.11.1 MarkupSafe-1.1.1 Pygments-2.3.1 alabaster-0.7.12 babel-2.8.0 certifi-2019.11.28 chardet-3.0.4 commonmark-0.8.1 docutils-0.14 future-0.18.2 idna-2.9 imagesize-1.2.0 mock-1.0.1 packaging-20.3 pillow-5.4.1 pyparsing-2.4.6 pytz-2019.3 readthedocs-sphinx-ext-1.0.1 recommonmark-0.5.0 requests-2.23.0 setuptools-41.0.1 six-1.14.0 snowballstemmer-2.0.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-websupport-1.2.1 urllib3-1.25.8 [rtd-command-info] start-time: 2020-03-26T06:37:37.665552Z, end-time: 2020-03-26T06:37:49.009444Z, duration: 11, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r requirements.txt Collecting cmake>=3.11.0 Downloading cmake-3.16.3-py3-none-manylinux2010_x86_64.whl (17.0 MB) Collecting cython>=0.29 Downloading Cython-0.29.16-cp37-cp37m-manylinux1_x86_64.whl (2.1 MB) Collecting numpy==1.16.* Downloading numpy-1.16.6-cp37-cp37m-manylinux1_x86_64.whl (17.3 MB) Requirement already satisfied: setuptools>=18.0.1 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 4)) (41.0.1) Collecting setuptools-scm>=1.5.4 Downloading setuptools_scm-3.5.0-py2.py3-none-any.whl (26 kB) Requirement already satisfied: wheel>=0.30 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 6)) (0.34.2) Collecting psutil Downloading psutil-5.7.0.tar.gz (449 kB) Building wheels for collected packages: psutil Building wheel for psutil (setup.py): started Building wheel for psutil (setup.py): finished with status 'done' Created wheel for psutil: filename=psutil-5.7.0-cp37-cp37m-linux_x86_64.whl size=276463 sha256=6682e249bcf0f74797a8f48858a46bbaf7af20d6f39c979fa55a910a171c5c15 Stored in directory: /tmp/pip-ephem-wheel-cache-zx87pqwr/wheels/b6/e7/50/aee9cc966163d74430f13f208171dee22f11efa4a4a826661c Successfully built psutil Installing collected packages: cmake, cython, numpy, setuptools-scm, psutil Successfully installed cmake-3.16.3 cython-0.29.16 numpy-1.16.6 psutil-5.7.0 setuptools-scm-3.5.0 [rtd-command-info] start-time: 2020-03-26T06:37:49.167565Z, end-time: 2020-03-26T07:37:21.872906Z, duration: 3572, exit-code: 137 python ./setup.py install --force libtiledb_exists checking 'library_dirs': [] libtiledb_exists found: 'None' running install running bdist_egg GNU Make 4.1 Built for x86_64-pc-linux-gnu Copyright (C) 1988-2014 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. -- The C compiler identification is GNU 7.4.0 -- The CXX compiler identification is GNU 7.4.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Starting TileDB superbuild. -- Found Bzip2: /usr/lib/x86_64-linux-gnu/libbz2.so -- Could NOT find LZ4 (missing: LZ4_LIBRARIES LZ4_INCLUDE_DIR) -- Adding LZ4 as an external project -- Could NOT find Spdlog (missing: SPDLOG_INCLUDE_DIR) -- Adding Spdlog as an external project -- Found Zlib: /usr/lib/x86_64-linux-gnu/libz.so -- Could NOT find Zstd (missing: ZSTD_LIBRARIES ZSTD_INCLUDE_DIR) -- Adding Zstd as an external project -- Found OpenSSL: /usr/lib/x86_64-linux-gnu/libssl.so -- OpenSSL crypto: /usr/lib/x86_64-linux-gnu/libcrypto.so -- root: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/install;/usr/local/opt/openssl -- Could NOT find CURL (missing: CURL_LIBRARY CURL_INCLUDE_DIR) -- Could NOT find Curl (missing: CURL_LIBRARIES CURL_INCLUDE_DIR) -- Adding Curl as an external project CMake Warning at cmake/Modules/FindCurl_EP.cmake:106 (message): TileDB FindOpenSSL_EP did not set TILEDB_OPENSSL_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) CMake Warning at cmake/Modules/FindCurl_EP.cmake:118 (message): TileDB FindZlib_EP did not set TILEDB_ZLIB_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) -- Could NOT find AWSSDK -- Adding AWSSDK as an external project -- Could NOT find TBB (missing: TBB_LIBRARIES TBB_INCLUDE_DIR) -- Adding TBB as an external project -- Not found clang-tidy -- Not found clang-format -- Found Doxygen: /usr/bin/doxygen (found version "1.8.13") found components: doxygen dot -- Install prefix is /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/dist -- Configuring done -- Generating done -- Build files have been written to: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build Scanning dependencies of target ep_lz4 [ 1%] Creating directories for 'ep_lz4' [ 3%] Performing download step (download, verify and extract) for 'ep_lz4' -- ep_lz4 download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_lz4-stamp/ep_lz4-download-*.log [ 5%] No patch step for 'ep_lz4' [ 7%] No update step for 'ep_lz4' [ 8%] Performing configure step for 'ep_lz4' -- ep_lz4 configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_lz4-stamp/ep_lz4-configure-*.log [ 10%] Performing build step for 'ep_lz4' -- ep_lz4 build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_lz4-stamp/ep_lz4-build-*.log [ 12%] Performing install step for 'ep_lz4' -- ep_lz4 install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_lz4-stamp/ep_lz4-install-*.log [ 14%] Completed 'ep_lz4' [ 14%] Built target ep_lz4 Scanning dependencies of target ep_zstd [ 16%] Creating directories for 'ep_zstd' [ 17%] Performing download step (download, verify and extract) for 'ep_zstd' -- ep_zstd download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-download-*.log [ 19%] No patch step for 'ep_zstd' [ 21%] No update step for 'ep_zstd' [ 23%] Performing configure step for 'ep_zstd' -- ep_zstd configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-configure-*.log [ 25%] Performing build step for 'ep_zstd' -- ep_zstd build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-build-*.log [ 26%] Performing install step for 'ep_zstd' -- ep_zstd install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-install-*.log [ 28%] Completed 'ep_zstd' [ 28%] Built target ep_zstd Scanning dependencies of target ep_tbb [ 30%] Creating directories for 'ep_tbb' [ 32%] Performing download step (download, verify and extract) for 'ep_tbb' -- ep_tbb download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_tbb-stamp/ep_tbb-download-*.log [ 33%] No patch step for 'ep_tbb' [ 35%] No update step for 'ep_tbb' [ 37%] No configure step for 'ep_tbb' [ 39%] No build step for 'ep_tbb' [ 41%] No install step for 'ep_tbb' [ 42%] Completed 'ep_tbb' [ 42%] Built target ep_tbb Scanning dependencies of target ep_curl [ 44%] Creating directories for 'ep_curl' [ 46%] Performing download step (download, verify and extract) for 'ep_curl' -- ep_curl download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-download-*.log [ 48%] No patch step for 'ep_curl' [ 50%] No update step for 'ep_curl' [ 51%] Performing configure step for 'ep_curl' -- ep_curl configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-configure-*.log [ 53%] Performing build step for 'ep_curl' -- ep_curl build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-build-*.log [ 55%] Performing install step for 'ep_curl' -- ep_curl install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-install-*.log [ 57%] Completed 'ep_curl' [ 57%] Built target ep_curl Scanning dependencies of target ep_awssdk [ 58%] Creating directories for 'ep_awssdk' [ 60%] Performing download step (download, verify and extract) for 'ep_awssdk' -- ep_awssdk download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-download-*.log [ 62%] No patch step for 'ep_awssdk' [ 64%] No update step for 'ep_awssdk' [ 66%] Performing configure step for 'ep_awssdk' -- ep_awssdk configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-configure-*.log [ 67%] Performing build step for 'ep_awssdk' Command killed due to excessive memory consumption [rtd-command-info] start-time: 2020-03-26T07:37:15.419291Z, end-time: 2020-03-26T07:37:16.629661Z, duration: 1, exit-code: 0 git clone --no-single-branch --depth 50 https://github.com/TileDB-Inc/TileDB-Py.git . Cloning into '.'... [rtd-command-info] start-time: 2020-03-26T07:37:17.045324Z, end-time: 2020-03-26T07:37:17.342152Z, duration: 0, exit-code: 0 git checkout --force de2aff00b97498420199a9d16c8375df70e94780 Note: checking out 'de2aff00b97498420199a9d16c8375df70e94780'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at de2aff0 Add error check for libtiledb build validity in setup.py [rtd-command-info] start-time: 2020-03-26T07:37:17.498729Z, end-time: 2020-03-26T07:37:17.809772Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2020-03-26T07:37:19.234570Z, end-time: 2020-03-26T07:37:23.913418Z, duration: 4, exit-code: 0 python3.7 -mvirtualenv Using base prefix '/home/docs/.pyenv/versions/3.7.3' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2020-03-26T07:37:24.150135Z, end-time: 2020-03-26T07:37:25.118095Z, duration: 0, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip Requirement already up-to-date: pip in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (20.0.2) [rtd-command-info] start-time: 2020-03-26T07:37:25.270795Z, end-time: 2020-03-26T07:37:36.416497Z, duration: 11, exit-code: 0 python -m pip install --upgrade --no-cache-dir Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1 Collecting Pygments==2.3.1 Downloading Pygments-2.3.1-py2.py3-none-any.whl (849 kB) Collecting setuptools==41.0.1 Downloading setuptools-41.0.1-py2.py3-none-any.whl (575 kB) Collecting docutils==0.14 Downloading docutils-0.14-py3-none-any.whl (543 kB) Collecting mock==1.0.1 Downloading mock-1.0.1.tar.gz (818 kB) Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.5-py2.py3-none-any.whl (3.1 MB) Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) Collecting readthedocs-sphinx-ext<1.1 Downloading readthedocs_sphinx_ext-1.0.1-py2.py3-none-any.whl (14 kB) Collecting future Downloading future-0.18.2.tar.gz (829 kB) Collecting imagesize Downloading imagesize-1.2.0-py2.py3-none-any.whl (4.8 kB) Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.0.0-py2.py3-none-any.whl (97 kB) Collecting babel!=2.0,>=1.3 Downloading Babel-2.8.0-py2.py3-none-any.whl (8.6 MB) Collecting sphinxcontrib-websupport Downloading sphinxcontrib_websupport-1.2.1-py2.py3-none-any.whl (39 kB) Collecting Jinja2>=2.3 Downloading Jinja2-2.11.1-py2.py3-none-any.whl (126 kB) Collecting packaging Downloading packaging-20.3-py2.py3-none-any.whl (37 kB) Collecting six>=1.5 Downloading six-1.14.0-py2.py3-none-any.whl (10 kB) Collecting requests>=2.0.0 Downloading requests-2.23.0-py2.py3-none-any.whl (58 kB) Collecting pytz>=2015.7 Downloading pytz-2019.3-py2.py3-none-any.whl (509 kB) Collecting MarkupSafe>=0.23 Downloading MarkupSafe-1.1.1-cp37-cp37m-manylinux1_x86_64.whl (27 kB) Collecting pyparsing>=2.0.2 Downloading pyparsing-2.4.6-py2.py3-none-any.whl (67 kB) Collecting chardet<4,>=3.0.2 Downloading chardet-3.0.4-py2.py3-none-any.whl (133 kB) Collecting certifi>=2017.4.17 Downloading certifi-2019.11.28-py2.py3-none-any.whl (156 kB) Collecting idna<3,>=2.5 Downloading idna-2.9-py2.py3-none-any.whl (58 kB) Collecting urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 Downloading urllib3-1.25.8-py2.py3-none-any.whl (125 kB) Building wheels for collected packages: mock, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23754 sha256=afafadf930be4217cd21d6c7e53adba3c8674af881ed0bc013bf15a8d906e71b Stored in directory: /tmp/pip-ephem-wheel-cache-nc3udqu7/wheels/16/03/37/f0a64ab894c9102906f192db1a4071b7592292ad661563c69b Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491058 sha256=7b0b98e5cce34239a62f0da33095876c440665a204dcc27168f3798a4defe09b Stored in directory: /tmp/pip-ephem-wheel-cache-nc3udqu7/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0 Successfully built mock future Installing collected packages: Pygments, setuptools, docutils, mock, pillow, alabaster, future, commonmark, imagesize, snowballstemmer, pytz, babel, sphinxcontrib-websupport, MarkupSafe, Jinja2, pyparsing, six, packaging, chardet, certifi, idna, urllib3, requests, sphinx, recommonmark, sphinx-rtd-theme, readthedocs-sphinx-ext Attempting uninstall: setuptools Found existing installation: setuptools 46.1.3 Uninstalling setuptools-46.1.3: Successfully uninstalled setuptools-46.1.3 Successfully installed Jinja2-2.11.1 MarkupSafe-1.1.1 Pygments-2.3.1 alabaster-0.7.12 babel-2.8.0 certifi-2019.11.28 chardet-3.0.4 commonmark-0.8.1 docutils-0.14 future-0.18.2 idna-2.9 imagesize-1.2.0 mock-1.0.1 packaging-20.3 pillow-5.4.1 pyparsing-2.4.6 pytz-2019.3 readthedocs-sphinx-ext-1.0.1 recommonmark-0.5.0 requests-2.23.0 setuptools-41.0.1 six-1.14.0 snowballstemmer-2.0.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-websupport-1.2.1 urllib3-1.25.8 [rtd-command-info] start-time: 2020-03-26T07:37:36.569948Z, end-time: 2020-03-26T07:37:48.132848Z, duration: 11, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r requirements.txt Collecting cmake>=3.11.0 Downloading cmake-3.16.3-py3-none-manylinux2010_x86_64.whl (17.0 MB) Collecting cython>=0.29 Downloading Cython-0.29.16-cp37-cp37m-manylinux1_x86_64.whl (2.1 MB) Collecting numpy==1.16.* Downloading numpy-1.16.6-cp37-cp37m-manylinux1_x86_64.whl (17.3 MB) Requirement already satisfied: setuptools>=18.0.1 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 4)) (41.0.1) Collecting setuptools-scm>=1.5.4 Downloading setuptools_scm-3.5.0-py2.py3-none-any.whl (26 kB) Requirement already satisfied: wheel>=0.30 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 6)) (0.34.2) Collecting psutil Downloading psutil-5.7.0.tar.gz (449 kB) Building wheels for collected packages: psutil Building wheel for psutil (setup.py): started Building wheel for psutil (setup.py): finished with status 'done' Created wheel for psutil: filename=psutil-5.7.0-cp37-cp37m-linux_x86_64.whl size=276460 sha256=e4c01b474a93e301b784bd23d84f0cd3c131879768ef51ca4647705ac577eed7 Stored in directory: /tmp/pip-ephem-wheel-cache-1gk5sckh/wheels/b6/e7/50/aee9cc966163d74430f13f208171dee22f11efa4a4a826661c Successfully built psutil Installing collected packages: cmake, cython, numpy, setuptools-scm, psutil Successfully installed cmake-3.16.3 cython-0.29.16 numpy-1.16.6 psutil-5.7.0 setuptools-scm-3.5.0 [rtd-command-info] start-time: 2020-03-26T07:37:48.465367Z, end-time: 2020-03-26T08:37:22.664411Z, duration: 3574, exit-code: 137 python ./setup.py install --force libtiledb_exists checking 'library_dirs': [] libtiledb_exists found: 'None' running install running bdist_egg GNU Make 4.1 Built for x86_64-pc-linux-gnu Copyright (C) 1988-2014 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. -- The C compiler identification is GNU 7.4.0 -- The CXX compiler identification is GNU 7.4.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Starting TileDB superbuild. -- Found Bzip2: /usr/lib/x86_64-linux-gnu/libbz2.so -- Could NOT find LZ4 (missing: LZ4_LIBRARIES LZ4_INCLUDE_DIR) -- Adding LZ4 as an external project -- Could NOT find Spdlog (missing: SPDLOG_INCLUDE_DIR) -- Adding Spdlog as an external project -- Found Zlib: /usr/lib/x86_64-linux-gnu/libz.so -- Could NOT find Zstd (missing: ZSTD_LIBRARIES ZSTD_INCLUDE_DIR) -- Adding Zstd as an external project -- Found OpenSSL: /usr/lib/x86_64-linux-gnu/libssl.so -- OpenSSL crypto: /usr/lib/x86_64-linux-gnu/libcrypto.so -- root: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/install;/usr/local/opt/openssl -- Could NOT find CURL (missing: CURL_LIBRARY CURL_INCLUDE_DIR) -- Could NOT find Curl (missing: CURL_LIBRARIES CURL_INCLUDE_DIR) -- Adding Curl as an external project CMake Warning at cmake/Modules/FindCurl_EP.cmake:106 (message): TileDB FindOpenSSL_EP did not set TILEDB_OPENSSL_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) CMake Warning at cmake/Modules/FindCurl_EP.cmake:118 (message): TileDB FindZlib_EP did not set TILEDB_ZLIB_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) -- Could NOT find AWSSDK -- Adding AWSSDK as an external project -- Could NOT find TBB (missing: TBB_LIBRARIES TBB_INCLUDE_DIR) -- Adding TBB as an external project -- Not found clang-tidy -- Not found clang-format -- Found Doxygen: /usr/bin/doxygen (found version "1.8.13") found components: doxygen dot -- Install prefix is /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/dist -- Configuring done -- Generating done -- Build files have been written to: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build Scanning dependencies of target ep_curl [ 1%] Creating directories for 'ep_curl' [ 3%] Performing download step (download, verify and extract) for 'ep_curl' -- ep_curl download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-download-*.log [ 5%] No patch step for 'ep_curl' [ 7%] No update step for 'ep_curl' [ 8%] Performing configure step for 'ep_curl' -- ep_curl configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-configure-*.log [ 10%] Performing build step for 'ep_curl' -- ep_curl build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-build-*.log [ 12%] Performing install step for 'ep_curl' -- ep_curl install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-install-*.log [ 14%] Completed 'ep_curl' [ 14%] Built target ep_curl Scanning dependencies of target ep_awssdk [ 16%] Creating directories for 'ep_awssdk' [ 17%] Performing download step (download, verify and extract) for 'ep_awssdk' -- ep_awssdk download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-download-*.log [ 19%] No patch step for 'ep_awssdk' [ 21%] No update step for 'ep_awssdk' [ 23%] Performing configure step for 'ep_awssdk' -- ep_awssdk configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-configure-*.log [ 25%] Performing build step for 'ep_awssdk' Command killed due to excessive memory consumption [rtd-command-info] start-time: 2020-03-26T08:37:16.153022Z, end-time: 2020-03-26T08:37:17.694867Z, duration: 1, exit-code: 0 git clone --no-single-branch --depth 50 https://github.com/TileDB-Inc/TileDB-Py.git . Cloning into '.'... [rtd-command-info] start-time: 2020-03-26T08:37:18.132027Z, end-time: 2020-03-26T08:37:18.458127Z, duration: 0, exit-code: 0 git checkout --force de2aff00b97498420199a9d16c8375df70e94780 Note: checking out 'de2aff00b97498420199a9d16c8375df70e94780'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at de2aff0 Add error check for libtiledb build validity in setup.py [rtd-command-info] start-time: 2020-03-26T08:37:18.614706Z, end-time: 2020-03-26T08:37:18.933802Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2020-03-26T08:37:20.392665Z, end-time: 2020-03-26T08:37:25.212285Z, duration: 4, exit-code: 0 python3.7 -mvirtualenv Using base prefix '/home/docs/.pyenv/versions/3.7.3' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2020-03-26T08:37:25.380980Z, end-time: 2020-03-26T08:37:26.390990Z, duration: 1, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip Requirement already up-to-date: pip in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (20.0.2) [rtd-command-info] start-time: 2020-03-26T08:37:26.549497Z, end-time: 2020-03-26T08:37:38.069216Z, duration: 11, exit-code: 0 python -m pip install --upgrade --no-cache-dir Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1 Collecting Pygments==2.3.1 Downloading Pygments-2.3.1-py2.py3-none-any.whl (849 kB) Collecting setuptools==41.0.1 Downloading setuptools-41.0.1-py2.py3-none-any.whl (575 kB) Collecting docutils==0.14 Downloading docutils-0.14-py3-none-any.whl (543 kB) Collecting mock==1.0.1 Downloading mock-1.0.1.tar.gz (818 kB) Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.5-py2.py3-none-any.whl (3.1 MB) Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) Collecting readthedocs-sphinx-ext<1.1 Downloading readthedocs_sphinx_ext-1.0.1-py2.py3-none-any.whl (14 kB) Collecting future Downloading future-0.18.2.tar.gz (829 kB) Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.0.0-py2.py3-none-any.whl (97 kB) Collecting imagesize Downloading imagesize-1.2.0-py2.py3-none-any.whl (4.8 kB) Collecting packaging Downloading packaging-20.3-py2.py3-none-any.whl (37 kB) Collecting sphinxcontrib-websupport Downloading sphinxcontrib_websupport-1.2.1-py2.py3-none-any.whl (39 kB) Collecting babel!=2.0,>=1.3 Downloading Babel-2.8.0-py2.py3-none-any.whl (8.6 MB) Collecting requests>=2.0.0 Downloading requests-2.23.0-py2.py3-none-any.whl (58 kB) Collecting Jinja2>=2.3 Downloading Jinja2-2.11.1-py2.py3-none-any.whl (126 kB) Collecting six>=1.5 Downloading six-1.14.0-py2.py3-none-any.whl (10 kB) Collecting pyparsing>=2.0.2 Downloading pyparsing-2.4.6-py2.py3-none-any.whl (67 kB) Collecting pytz>=2015.7 Downloading pytz-2019.3-py2.py3-none-any.whl (509 kB) Collecting certifi>=2017.4.17 Downloading certifi-2019.11.28-py2.py3-none-any.whl (156 kB) Collecting chardet<4,>=3.0.2 Downloading chardet-3.0.4-py2.py3-none-any.whl (133 kB) Collecting idna<3,>=2.5 Downloading idna-2.9-py2.py3-none-any.whl (58 kB) Collecting urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 Downloading urllib3-1.25.8-py2.py3-none-any.whl (125 kB) Collecting MarkupSafe>=0.23 Downloading MarkupSafe-1.1.1-cp37-cp37m-manylinux1_x86_64.whl (27 kB) Building wheels for collected packages: mock, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23754 sha256=272b2fd12bf58434b1fe4b584dba66287c8b22cdfb096f2d00c89d49e50f5a58 Stored in directory: /tmp/pip-ephem-wheel-cache-qqvwwavf/wheels/16/03/37/f0a64ab894c9102906f192db1a4071b7592292ad661563c69b Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491058 sha256=77acb6eacd1bec42fbfade40c0b9b747ff75f772edc7408eb8b820531400cf04 Stored in directory: /tmp/pip-ephem-wheel-cache-qqvwwavf/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0 Successfully built mock future Installing collected packages: Pygments, setuptools, docutils, mock, pillow, alabaster, future, commonmark, snowballstemmer, imagesize, pyparsing, six, packaging, sphinxcontrib-websupport, pytz, babel, certifi, chardet, idna, urllib3, requests, MarkupSafe, Jinja2, sphinx, recommonmark, sphinx-rtd-theme, readthedocs-sphinx-ext Attempting uninstall: setuptools Found existing installation: setuptools 46.1.3 Uninstalling setuptools-46.1.3: Successfully uninstalled setuptools-46.1.3 Successfully installed Jinja2-2.11.1 MarkupSafe-1.1.1 Pygments-2.3.1 alabaster-0.7.12 babel-2.8.0 certifi-2019.11.28 chardet-3.0.4 commonmark-0.8.1 docutils-0.14 future-0.18.2 idna-2.9 imagesize-1.2.0 mock-1.0.1 packaging-20.3 pillow-5.4.1 pyparsing-2.4.6 pytz-2019.3 readthedocs-sphinx-ext-1.0.1 recommonmark-0.5.0 requests-2.23.0 setuptools-41.0.1 six-1.14.0 snowballstemmer-2.0.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-websupport-1.2.1 urllib3-1.25.8 [rtd-command-info] start-time: 2020-03-26T08:37:38.238106Z, end-time: 2020-03-26T08:37:50.956566Z, duration: 12, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r requirements.txt Collecting cmake>=3.11.0 Downloading cmake-3.16.3-py3-none-manylinux2010_x86_64.whl (17.0 MB) Collecting cython>=0.29 Downloading Cython-0.29.16-cp37-cp37m-manylinux1_x86_64.whl (2.1 MB) Collecting numpy==1.16.* Downloading numpy-1.16.6-cp37-cp37m-manylinux1_x86_64.whl (17.3 MB) Requirement already satisfied: setuptools>=18.0.1 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 4)) (41.0.1) Collecting setuptools-scm>=1.5.4 Downloading setuptools_scm-3.5.0-py2.py3-none-any.whl (26 kB) Requirement already satisfied: wheel>=0.30 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 6)) (0.34.2) Collecting psutil Downloading psutil-5.7.0.tar.gz (449 kB) Building wheels for collected packages: psutil Building wheel for psutil (setup.py): started Building wheel for psutil (setup.py): finished with status 'done' Created wheel for psutil: filename=psutil-5.7.0-cp37-cp37m-linux_x86_64.whl size=276493 sha256=3847e85316d55d8641b26d8ff22c7f7a43ee0983d20c274b514e347b871de245 Stored in directory: /tmp/pip-ephem-wheel-cache-1x6bzudp/wheels/b6/e7/50/aee9cc966163d74430f13f208171dee22f11efa4a4a826661c Successfully built psutil Installing collected packages: cmake, cython, numpy, setuptools-scm, psutil Successfully installed cmake-3.16.3 cython-0.29.16 numpy-1.16.6 psutil-5.7.0 setuptools-scm-3.5.0 [rtd-command-info] start-time: 2020-03-26T08:37:51.121174Z, end-time: 2020-03-26T09:37:21.970036Z, duration: 3570, exit-code: 137 python ./setup.py install --force libtiledb_exists checking 'library_dirs': [] libtiledb_exists found: 'None' running install running bdist_egg GNU Make 4.1 Built for x86_64-pc-linux-gnu Copyright (C) 1988-2014 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. -- The C compiler identification is GNU 7.4.0 -- The CXX compiler identification is GNU 7.4.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Starting TileDB superbuild. -- Found Bzip2: /usr/lib/x86_64-linux-gnu/libbz2.so -- Could NOT find LZ4 (missing: LZ4_LIBRARIES LZ4_INCLUDE_DIR) -- Adding LZ4 as an external project -- Could NOT find Spdlog (missing: SPDLOG_INCLUDE_DIR) -- Adding Spdlog as an external project -- Found Zlib: /usr/lib/x86_64-linux-gnu/libz.so -- Could NOT find Zstd (missing: ZSTD_LIBRARIES ZSTD_INCLUDE_DIR) -- Adding Zstd as an external project -- Found OpenSSL: /usr/lib/x86_64-linux-gnu/libssl.so -- OpenSSL crypto: /usr/lib/x86_64-linux-gnu/libcrypto.so -- root: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/install;/usr/local/opt/openssl -- Could NOT find CURL (missing: CURL_LIBRARY CURL_INCLUDE_DIR) -- Could NOT find Curl (missing: CURL_LIBRARIES CURL_INCLUDE_DIR) -- Adding Curl as an external project CMake Warning at cmake/Modules/FindCurl_EP.cmake:106 (message): TileDB FindOpenSSL_EP did not set TILEDB_OPENSSL_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) CMake Warning at cmake/Modules/FindCurl_EP.cmake:118 (message): TileDB FindZlib_EP did not set TILEDB_ZLIB_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) -- Could NOT find AWSSDK -- Adding AWSSDK as an external project -- Could NOT find TBB (missing: TBB_LIBRARIES TBB_INCLUDE_DIR) -- Adding TBB as an external project -- Not found clang-tidy -- Not found clang-format -- Found Doxygen: /usr/bin/doxygen (found version "1.8.13") found components: doxygen dot -- Install prefix is /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/dist -- Configuring done -- Generating done -- Build files have been written to: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build Scanning dependencies of target ep_curl [ 1%] Creating directories for 'ep_curl' [ 3%] Performing download step (download, verify and extract) for 'ep_curl' -- ep_curl download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-download-*.log [ 5%] No patch step for 'ep_curl' [ 7%] No update step for 'ep_curl' [ 8%] Performing configure step for 'ep_curl' -- ep_curl configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-configure-*.log [ 10%] Performing build step for 'ep_curl' -- ep_curl build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-build-*.log [ 12%] Performing install step for 'ep_curl' -- ep_curl install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-install-*.log [ 14%] Completed 'ep_curl' [ 14%] Built target ep_curl Scanning dependencies of target ep_awssdk [ 16%] Creating directories for 'ep_awssdk' [ 17%] Performing download step (download, verify and extract) for 'ep_awssdk' -- ep_awssdk download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-download-*.log [ 19%] No patch step for 'ep_awssdk' [ 21%] No update step for 'ep_awssdk' [ 23%] Performing configure step for 'ep_awssdk' -- ep_awssdk configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-configure-*.log [ 25%] Performing build step for 'ep_awssdk' Command killed due to excessive memory consumption [rtd-command-info] start-time: 2020-03-26T09:37:16.481943Z, end-time: 2020-03-26T09:37:22.610601Z, duration: 6, exit-code: 0 git clone --no-single-branch --depth 50 https://github.com/TileDB-Inc/TileDB-Py.git . Cloning into '.'... [rtd-command-info] start-time: 2020-03-26T09:37:23.032073Z, end-time: 2020-03-26T09:37:23.364450Z, duration: 0, exit-code: 0 git checkout --force de2aff00b97498420199a9d16c8375df70e94780 Note: checking out 'de2aff00b97498420199a9d16c8375df70e94780'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at de2aff0 Add error check for libtiledb build validity in setup.py [rtd-command-info] start-time: 2020-03-26T09:37:23.518934Z, end-time: 2020-03-26T09:37:23.844912Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2020-03-26T09:37:25.666757Z, end-time: 2020-03-26T09:37:46.940917Z, duration: 21, exit-code: 0 python3.7 -mvirtualenv Using base prefix '/home/docs/.pyenv/versions/3.7.3' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2020-03-26T09:37:47.110154Z, end-time: 2020-03-26T09:37:48.156058Z, duration: 1, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip Requirement already up-to-date: pip in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (20.0.2) [rtd-command-info] start-time: 2020-03-26T09:37:48.576500Z, end-time: 2020-03-26T09:38:01.069651Z, duration: 12, exit-code: 0 python -m pip install --upgrade --no-cache-dir Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1 Collecting Pygments==2.3.1 Downloading Pygments-2.3.1-py2.py3-none-any.whl (849 kB) Collecting setuptools==41.0.1 Downloading setuptools-41.0.1-py2.py3-none-any.whl (575 kB) Collecting docutils==0.14 Downloading docutils-0.14-py3-none-any.whl (543 kB) Collecting mock==1.0.1 Downloading mock-1.0.1.tar.gz (818 kB) Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.5-py2.py3-none-any.whl (3.1 MB) Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) Collecting readthedocs-sphinx-ext<1.1 Downloading readthedocs_sphinx_ext-1.0.1-py2.py3-none-any.whl (14 kB) Collecting future Downloading future-0.18.2.tar.gz (829 kB) Collecting babel!=2.0,>=1.3 Downloading Babel-2.8.0-py2.py3-none-any.whl (8.6 MB) Collecting imagesize Downloading imagesize-1.2.0-py2.py3-none-any.whl (4.8 kB) Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.0.0-py2.py3-none-any.whl (97 kB) Collecting requests>=2.0.0 Downloading requests-2.23.0-py2.py3-none-any.whl (58 kB) Collecting six>=1.5 Downloading six-1.14.0-py2.py3-none-any.whl (10 kB) Collecting packaging Downloading packaging-20.3-py2.py3-none-any.whl (37 kB) Collecting Jinja2>=2.3 Downloading Jinja2-2.11.1-py2.py3-none-any.whl (126 kB) Collecting sphinxcontrib-websupport Downloading sphinxcontrib_websupport-1.2.1-py2.py3-none-any.whl (39 kB) Collecting pytz>=2015.7 Downloading pytz-2019.3-py2.py3-none-any.whl (509 kB) Collecting certifi>=2017.4.17 Downloading certifi-2019.11.28-py2.py3-none-any.whl (156 kB) Collecting urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 Downloading urllib3-1.25.8-py2.py3-none-any.whl (125 kB) Collecting chardet<4,>=3.0.2 Downloading chardet-3.0.4-py2.py3-none-any.whl (133 kB) Collecting idna<3,>=2.5 Downloading idna-2.9-py2.py3-none-any.whl (58 kB) Collecting pyparsing>=2.0.2 Downloading pyparsing-2.4.6-py2.py3-none-any.whl (67 kB) Collecting MarkupSafe>=0.23 Downloading MarkupSafe-1.1.1-cp37-cp37m-manylinux1_x86_64.whl (27 kB) Building wheels for collected packages: mock, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23754 sha256=e78030b4ab9de91d6615454f302d72f6263cc3b13148dfbeb0de232b0d630ec1 Stored in directory: /tmp/pip-ephem-wheel-cache-kbf6vc82/wheels/16/03/37/f0a64ab894c9102906f192db1a4071b7592292ad661563c69b Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491058 sha256=023e4455c01deef651f045c401dbed56424aeaba6e0c02565875924e8296771a Stored in directory: /tmp/pip-ephem-wheel-cache-kbf6vc82/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0 Successfully built mock future Installing collected packages: Pygments, setuptools, docutils, mock, pillow, alabaster, future, commonmark, pytz, babel, imagesize, snowballstemmer, certifi, urllib3, chardet, idna, requests, six, pyparsing, packaging, MarkupSafe, Jinja2, sphinxcontrib-websupport, sphinx, recommonmark, sphinx-rtd-theme, readthedocs-sphinx-ext Attempting uninstall: setuptools Found existing installation: setuptools 46.1.3 Uninstalling setuptools-46.1.3: Successfully uninstalled setuptools-46.1.3 Successfully installed Jinja2-2.11.1 MarkupSafe-1.1.1 Pygments-2.3.1 alabaster-0.7.12 babel-2.8.0 certifi-2019.11.28 chardet-3.0.4 commonmark-0.8.1 docutils-0.14 future-0.18.2 idna-2.9 imagesize-1.2.0 mock-1.0.1 packaging-20.3 pillow-5.4.1 pyparsing-2.4.6 pytz-2019.3 readthedocs-sphinx-ext-1.0.1 recommonmark-0.5.0 requests-2.23.0 setuptools-41.0.1 six-1.14.0 snowballstemmer-2.0.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-websupport-1.2.1 urllib3-1.25.8 [rtd-command-info] start-time: 2020-03-26T09:38:01.243584Z, end-time: 2020-03-26T09:38:26.976496Z, duration: 25, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r requirements.txt Collecting cmake>=3.11.0 Downloading cmake-3.16.3-py3-none-manylinux2010_x86_64.whl (17.0 MB) Collecting cython>=0.29 Downloading Cython-0.29.16-cp37-cp37m-manylinux1_x86_64.whl (2.1 MB) Collecting numpy==1.16.* Downloading numpy-1.16.6-cp37-cp37m-manylinux1_x86_64.whl (17.3 MB) Requirement already satisfied: setuptools>=18.0.1 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 4)) (41.0.1) Collecting setuptools-scm>=1.5.4 Downloading setuptools_scm-3.5.0-py2.py3-none-any.whl (26 kB) Requirement already satisfied: wheel>=0.30 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 6)) (0.34.2) Collecting psutil Downloading psutil-5.7.0.tar.gz (449 kB) Building wheels for collected packages: psutil Building wheel for psutil (setup.py): started Building wheel for psutil (setup.py): finished with status 'done' Created wheel for psutil: filename=psutil-5.7.0-cp37-cp37m-linux_x86_64.whl size=276456 sha256=689676499e2ee1b0e7a41318c94b274a38fe78ec4ef8c72e8325318149ab4e48 Stored in directory: /tmp/pip-ephem-wheel-cache-jd0skdi1/wheels/b6/e7/50/aee9cc966163d74430f13f208171dee22f11efa4a4a826661c Successfully built psutil Installing collected packages: cmake, cython, numpy, setuptools-scm, psutil Successfully installed cmake-3.16.3 cython-0.29.16 numpy-1.16.6 psutil-5.7.0 setuptools-scm-3.5.0 [rtd-command-info] start-time: 2020-03-26T09:38:27.132050Z, end-time: 2020-03-26T10:37:32.138702Z, duration: 3545, exit-code: 137 python ./setup.py install --force libtiledb_exists checking 'library_dirs': [] libtiledb_exists found: 'None' running install running bdist_egg GNU Make 4.1 Built for x86_64-pc-linux-gnu Copyright (C) 1988-2014 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. -- The C compiler identification is GNU 7.4.0 -- The CXX compiler identification is GNU 7.4.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Starting TileDB superbuild. -- Found Bzip2: /usr/lib/x86_64-linux-gnu/libbz2.so -- Could NOT find LZ4 (missing: LZ4_LIBRARIES LZ4_INCLUDE_DIR) -- Adding LZ4 as an external project -- Could NOT find Spdlog (missing: SPDLOG_INCLUDE_DIR) -- Adding Spdlog as an external project -- Found Zlib: /usr/lib/x86_64-linux-gnu/libz.so -- Could NOT find Zstd (missing: ZSTD_LIBRARIES ZSTD_INCLUDE_DIR) -- Adding Zstd as an external project -- Found OpenSSL: /usr/lib/x86_64-linux-gnu/libssl.so -- OpenSSL crypto: /usr/lib/x86_64-linux-gnu/libcrypto.so -- root: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/install;/usr/local/opt/openssl -- Could NOT find CURL (missing: CURL_LIBRARY CURL_INCLUDE_DIR) -- Could NOT find Curl (missing: CURL_LIBRARIES CURL_INCLUDE_DIR) -- Adding Curl as an external project CMake Warning at cmake/Modules/FindCurl_EP.cmake:106 (message): TileDB FindOpenSSL_EP did not set TILEDB_OPENSSL_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) CMake Warning at cmake/Modules/FindCurl_EP.cmake:118 (message): TileDB FindZlib_EP did not set TILEDB_ZLIB_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) -- Could NOT find AWSSDK -- Adding AWSSDK as an external project -- Could NOT find TBB (missing: TBB_LIBRARIES TBB_INCLUDE_DIR) -- Adding TBB as an external project -- Not found clang-tidy -- Not found clang-format -- Found Doxygen: /usr/bin/doxygen (found version "1.8.13") found components: doxygen dot -- Install prefix is /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/dist -- Configuring done -- Generating done -- Build files have been written to: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build Scanning dependencies of target ep_curl [ 1%] Creating directories for 'ep_curl' [ 3%] Performing download step (download, verify and extract) for 'ep_curl' -- ep_curl download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-download-*.log [ 5%] No patch step for 'ep_curl' [ 7%] No update step for 'ep_curl' [ 8%] Performing configure step for 'ep_curl' -- ep_curl configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-configure-*.log [ 10%] Performing build step for 'ep_curl' -- ep_curl build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-build-*.log [ 12%] Performing install step for 'ep_curl' -- ep_curl install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-install-*.log [ 14%] Completed 'ep_curl' [ 14%] Built target ep_curl Scanning dependencies of target ep_awssdk [ 16%] Creating directories for 'ep_awssdk' [ 17%] Performing download step (download, verify and extract) for 'ep_awssdk' -- ep_awssdk download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-download-*.log [ 19%] No patch step for 'ep_awssdk' [ 21%] No update step for 'ep_awssdk' [ 23%] Performing configure step for 'ep_awssdk' -- ep_awssdk configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-configure-*.log [ 25%] Performing build step for 'ep_awssdk' Command killed due to excessive memory consumption [rtd-command-info] start-time: 2020-03-26T10:37:16.801137Z, end-time: 2020-03-26T10:37:18.042358Z, duration: 1, exit-code: 0 git clone --no-single-branch --depth 50 https://github.com/TileDB-Inc/TileDB-Py.git . Cloning into '.'... [rtd-command-info] start-time: 2020-03-26T10:37:18.431409Z, end-time: 2020-03-26T10:37:18.762326Z, duration: 0, exit-code: 0 git checkout --force de2aff00b97498420199a9d16c8375df70e94780 Note: checking out 'de2aff00b97498420199a9d16c8375df70e94780'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at de2aff0 Add error check for libtiledb build validity in setup.py [rtd-command-info] start-time: 2020-03-26T10:37:18.917976Z, end-time: 2020-03-26T10:37:19.238849Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2020-03-26T10:37:20.687723Z, end-time: 2020-03-26T10:37:25.443271Z, duration: 4, exit-code: 0 python3.7 -mvirtualenv Using base prefix '/home/docs/.pyenv/versions/3.7.3' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2020-03-26T10:37:25.604682Z, end-time: 2020-03-26T10:37:26.618639Z, duration: 1, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip Requirement already up-to-date: pip in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (20.0.2) [rtd-command-info] start-time: 2020-03-26T10:37:26.775515Z, end-time: 2020-03-26T10:37:38.918027Z, duration: 12, exit-code: 0 python -m pip install --upgrade --no-cache-dir Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1 Collecting Pygments==2.3.1 Downloading Pygments-2.3.1-py2.py3-none-any.whl (849 kB) Collecting setuptools==41.0.1 Downloading setuptools-41.0.1-py2.py3-none-any.whl (575 kB) Collecting docutils==0.14 Downloading docutils-0.14-py3-none-any.whl (543 kB) Collecting mock==1.0.1 Downloading mock-1.0.1.tar.gz (818 kB) Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.5-py2.py3-none-any.whl (3.1 MB) Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) Collecting readthedocs-sphinx-ext<1.1 Downloading readthedocs_sphinx_ext-1.0.1-py2.py3-none-any.whl (14 kB) Collecting future Downloading future-0.18.2.tar.gz (829 kB) Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.0.0-py2.py3-none-any.whl (97 kB) Collecting babel!=2.0,>=1.3 Downloading Babel-2.8.0-py2.py3-none-any.whl (8.6 MB) Collecting Jinja2>=2.3 Downloading Jinja2-2.11.1-py2.py3-none-any.whl (126 kB) Collecting sphinxcontrib-websupport Downloading sphinxcontrib_websupport-1.2.1-py2.py3-none-any.whl (39 kB) Collecting imagesize Downloading imagesize-1.2.0-py2.py3-none-any.whl (4.8 kB) Collecting packaging Downloading packaging-20.3-py2.py3-none-any.whl (37 kB) Collecting six>=1.5 Downloading six-1.14.0-py2.py3-none-any.whl (10 kB) Collecting requests>=2.0.0 Downloading requests-2.23.0-py2.py3-none-any.whl (58 kB) Collecting pytz>=2015.7 Downloading pytz-2019.3-py2.py3-none-any.whl (509 kB) Collecting MarkupSafe>=0.23 Downloading MarkupSafe-1.1.1-cp37-cp37m-manylinux1_x86_64.whl (27 kB) Collecting pyparsing>=2.0.2 Downloading pyparsing-2.4.6-py2.py3-none-any.whl (67 kB) Collecting urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 Downloading urllib3-1.25.8-py2.py3-none-any.whl (125 kB) Collecting idna<3,>=2.5 Downloading idna-2.9-py2.py3-none-any.whl (58 kB) Collecting chardet<4,>=3.0.2 Downloading chardet-3.0.4-py2.py3-none-any.whl (133 kB) Collecting certifi>=2017.4.17 Downloading certifi-2019.11.28-py2.py3-none-any.whl (156 kB) Building wheels for collected packages: mock, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23754 sha256=cce89304bb77472729b0ce12028e7c0bf3b08949fc7abfc8ecffca846c314da3 Stored in directory: /tmp/pip-ephem-wheel-cache-iuip0eat/wheels/16/03/37/f0a64ab894c9102906f192db1a4071b7592292ad661563c69b Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491058 sha256=19ad9e1d749f57d7c51d3cb78be19e968e47bbe1bad7db9741b93b4c18293bc8 Stored in directory: /tmp/pip-ephem-wheel-cache-iuip0eat/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0 Successfully built mock future Installing collected packages: Pygments, setuptools, docutils, mock, pillow, alabaster, future, commonmark, snowballstemmer, pytz, babel, MarkupSafe, Jinja2, sphinxcontrib-websupport, imagesize, six, pyparsing, packaging, urllib3, idna, chardet, certifi, requests, sphinx, recommonmark, sphinx-rtd-theme, readthedocs-sphinx-ext Attempting uninstall: setuptools Found existing installation: setuptools 46.1.3 Uninstalling setuptools-46.1.3: Successfully uninstalled setuptools-46.1.3 Successfully installed Jinja2-2.11.1 MarkupSafe-1.1.1 Pygments-2.3.1 alabaster-0.7.12 babel-2.8.0 certifi-2019.11.28 chardet-3.0.4 commonmark-0.8.1 docutils-0.14 future-0.18.2 idna-2.9 imagesize-1.2.0 mock-1.0.1 packaging-20.3 pillow-5.4.1 pyparsing-2.4.6 pytz-2019.3 readthedocs-sphinx-ext-1.0.1 recommonmark-0.5.0 requests-2.23.0 setuptools-41.0.1 six-1.14.0 snowballstemmer-2.0.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-websupport-1.2.1 urllib3-1.25.8 [rtd-command-info] start-time: 2020-03-26T10:37:39.080717Z, end-time: 2020-03-26T10:37:51.598775Z, duration: 12, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r requirements.txt Collecting cmake>=3.11.0 Downloading cmake-3.16.3-py3-none-manylinux2010_x86_64.whl (17.0 MB) Collecting cython>=0.29 Downloading Cython-0.29.16-cp37-cp37m-manylinux1_x86_64.whl (2.1 MB) Collecting numpy==1.16.* Downloading numpy-1.16.6-cp37-cp37m-manylinux1_x86_64.whl (17.3 MB) Requirement already satisfied: setuptools>=18.0.1 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 4)) (41.0.1) Collecting setuptools-scm>=1.5.4 Downloading setuptools_scm-3.5.0-py2.py3-none-any.whl (26 kB) Requirement already satisfied: wheel>=0.30 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 6)) (0.34.2) Collecting psutil Downloading psutil-5.7.0.tar.gz (449 kB) Building wheels for collected packages: psutil Building wheel for psutil (setup.py): started Building wheel for psutil (setup.py): finished with status 'done' Created wheel for psutil: filename=psutil-5.7.0-cp37-cp37m-linux_x86_64.whl size=276446 sha256=9639639fa999cc9be5c6b2c948d38c176797bcbdf05e9bd18809521fef86ad09 Stored in directory: /tmp/pip-ephem-wheel-cache-43ocnldk/wheels/b6/e7/50/aee9cc966163d74430f13f208171dee22f11efa4a4a826661c Successfully built psutil Installing collected packages: cmake, cython, numpy, setuptools-scm, psutil Successfully installed cmake-3.16.3 cython-0.29.16 numpy-1.16.6 psutil-5.7.0 setuptools-scm-3.5.0 [rtd-command-info] start-time: 2020-03-26T10:37:51.758791Z, end-time: 2020-03-26T11:37:22.388539Z, duration: 3570, exit-code: 137 python ./setup.py install --force libtiledb_exists checking 'library_dirs': [] libtiledb_exists found: 'None' running install running bdist_egg GNU Make 4.1 Built for x86_64-pc-linux-gnu Copyright (C) 1988-2014 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. -- The C compiler identification is GNU 7.4.0 -- The CXX compiler identification is GNU 7.4.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Starting TileDB superbuild. -- Found Bzip2: /usr/lib/x86_64-linux-gnu/libbz2.so -- Could NOT find LZ4 (missing: LZ4_LIBRARIES LZ4_INCLUDE_DIR) -- Adding LZ4 as an external project -- Could NOT find Spdlog (missing: SPDLOG_INCLUDE_DIR) -- Adding Spdlog as an external project -- Found Zlib: /usr/lib/x86_64-linux-gnu/libz.so -- Could NOT find Zstd (missing: ZSTD_LIBRARIES ZSTD_INCLUDE_DIR) -- Adding Zstd as an external project -- Found OpenSSL: /usr/lib/x86_64-linux-gnu/libssl.so -- OpenSSL crypto: /usr/lib/x86_64-linux-gnu/libcrypto.so -- root: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/install;/usr/local/opt/openssl -- Could NOT find CURL (missing: CURL_LIBRARY CURL_INCLUDE_DIR) -- Could NOT find Curl (missing: CURL_LIBRARIES CURL_INCLUDE_DIR) -- Adding Curl as an external project CMake Warning at cmake/Modules/FindCurl_EP.cmake:106 (message): TileDB FindOpenSSL_EP did not set TILEDB_OPENSSL_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) CMake Warning at cmake/Modules/FindCurl_EP.cmake:118 (message): TileDB FindZlib_EP did not set TILEDB_ZLIB_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) -- Could NOT find AWSSDK -- Adding AWSSDK as an external project -- Could NOT find TBB (missing: TBB_LIBRARIES TBB_INCLUDE_DIR) -- Adding TBB as an external project -- Not found clang-tidy -- Not found clang-format -- Found Doxygen: /usr/bin/doxygen (found version "1.8.13") found components: doxygen dot -- Install prefix is /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/dist -- Configuring done -- Generating done -- Build files have been written to: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build Scanning dependencies of target ep_curl [ 1%] Creating directories for 'ep_curl' [ 3%] Performing download step (download, verify and extract) for 'ep_curl' -- ep_curl download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-download-*.log [ 5%] No patch step for 'ep_curl' [ 7%] No update step for 'ep_curl' [ 8%] Performing configure step for 'ep_curl' -- ep_curl configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-configure-*.log [ 10%] Performing build step for 'ep_curl' -- ep_curl build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-build-*.log [ 12%] Performing install step for 'ep_curl' -- ep_curl install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-install-*.log [ 14%] Completed 'ep_curl' [ 14%] Built target ep_curl Scanning dependencies of target ep_lz4 [ 16%] Creating directories for 'ep_lz4' [ 17%] Performing download step (download, verify and extract) for 'ep_lz4' -- ep_lz4 download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_lz4-stamp/ep_lz4-download-*.log [ 19%] No patch step for 'ep_lz4' [ 21%] No update step for 'ep_lz4' [ 23%] Performing configure step for 'ep_lz4' -- ep_lz4 configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_lz4-stamp/ep_lz4-configure-*.log [ 25%] Performing build step for 'ep_lz4' -- ep_lz4 build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_lz4-stamp/ep_lz4-build-*.log [ 26%] Performing install step for 'ep_lz4' -- ep_lz4 install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_lz4-stamp/ep_lz4-install-*.log [ 28%] Completed 'ep_lz4' [ 28%] Built target ep_lz4 Scanning dependencies of target ep_zstd [ 30%] Creating directories for 'ep_zstd' [ 32%] Performing download step (download, verify and extract) for 'ep_zstd' -- ep_zstd download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-download-*.log [ 33%] No patch step for 'ep_zstd' [ 35%] No update step for 'ep_zstd' [ 37%] Performing configure step for 'ep_zstd' -- ep_zstd configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-configure-*.log [ 39%] Performing build step for 'ep_zstd' -- ep_zstd build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-build-*.log [ 41%] Performing install step for 'ep_zstd' -- ep_zstd install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-install-*.log [ 42%] Completed 'ep_zstd' [ 42%] Built target ep_zstd Scanning dependencies of target ep_tbb [ 44%] Creating directories for 'ep_tbb' [ 46%] Performing download step (download, verify and extract) for 'ep_tbb' -- ep_tbb download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_tbb-stamp/ep_tbb-download-*.log [ 48%] No patch step for 'ep_tbb' [ 50%] No update step for 'ep_tbb' [ 51%] No configure step for 'ep_tbb' [ 53%] No build step for 'ep_tbb' [ 55%] No install step for 'ep_tbb' [ 57%] Completed 'ep_tbb' [ 57%] Built target ep_tbb Scanning dependencies of target ep_awssdk [ 58%] Creating directories for 'ep_awssdk' [ 60%] Performing download step (download, verify and extract) for 'ep_awssdk' -- ep_awssdk download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-download-*.log [ 62%] No patch step for 'ep_awssdk' [ 64%] No update step for 'ep_awssdk' [ 66%] Performing configure step for 'ep_awssdk' -- ep_awssdk configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-configure-*.log [ 67%] Performing build step for 'ep_awssdk' Command killed due to excessive memory consumption [rtd-command-info] start-time: 2020-03-26T11:37:17.022708Z, end-time: 2020-03-26T11:37:18.444266Z, duration: 1, exit-code: 0 git clone --no-single-branch --depth 50 https://github.com/TileDB-Inc/TileDB-Py.git . Cloning into '.'... [rtd-command-info] start-time: 2020-03-26T11:37:18.848207Z, end-time: 2020-03-26T11:37:19.159459Z, duration: 0, exit-code: 0 git checkout --force de2aff00b97498420199a9d16c8375df70e94780 Note: checking out 'de2aff00b97498420199a9d16c8375df70e94780'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at de2aff0 Add error check for libtiledb build validity in setup.py [rtd-command-info] start-time: 2020-03-26T11:37:19.319073Z, end-time: 2020-03-26T11:37:19.632996Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2020-03-26T11:37:21.090349Z, end-time: 2020-03-26T11:37:25.735212Z, duration: 4, exit-code: 0 python3.7 -mvirtualenv Using base prefix '/home/docs/.pyenv/versions/3.7.3' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2020-03-26T11:37:25.914795Z, end-time: 2020-03-26T11:37:26.905339Z, duration: 0, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip Requirement already up-to-date: pip in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (20.0.2) [rtd-command-info] start-time: 2020-03-26T11:37:27.066418Z, end-time: 2020-03-26T11:37:38.433728Z, duration: 11, exit-code: 0 python -m pip install --upgrade --no-cache-dir Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1 Collecting Pygments==2.3.1 Downloading Pygments-2.3.1-py2.py3-none-any.whl (849 kB) Collecting setuptools==41.0.1 Downloading setuptools-41.0.1-py2.py3-none-any.whl (575 kB) Collecting docutils==0.14 Downloading docutils-0.14-py3-none-any.whl (543 kB) Collecting mock==1.0.1 Downloading mock-1.0.1.tar.gz (818 kB) Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.5-py2.py3-none-any.whl (3.1 MB) Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) Collecting readthedocs-sphinx-ext<1.1 Downloading readthedocs_sphinx_ext-1.0.1-py2.py3-none-any.whl (14 kB) Collecting future Downloading future-0.18.2.tar.gz (829 kB) Collecting Jinja2>=2.3 Downloading Jinja2-2.11.1-py2.py3-none-any.whl (126 kB) Collecting sphinxcontrib-websupport Downloading sphinxcontrib_websupport-1.2.1-py2.py3-none-any.whl (39 kB) Collecting imagesize Downloading imagesize-1.2.0-py2.py3-none-any.whl (4.8 kB) Collecting six>=1.5 Downloading six-1.14.0-py2.py3-none-any.whl (10 kB) Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.0.0-py2.py3-none-any.whl (97 kB) Collecting requests>=2.0.0 Downloading requests-2.23.0-py2.py3-none-any.whl (58 kB) Collecting babel!=2.0,>=1.3 Downloading Babel-2.8.0-py2.py3-none-any.whl (8.6 MB) Collecting packaging Downloading packaging-20.3-py2.py3-none-any.whl (37 kB) Collecting MarkupSafe>=0.23 Downloading MarkupSafe-1.1.1-cp37-cp37m-manylinux1_x86_64.whl (27 kB) Collecting urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 Downloading urllib3-1.25.8-py2.py3-none-any.whl (125 kB) Collecting certifi>=2017.4.17 Downloading certifi-2019.11.28-py2.py3-none-any.whl (156 kB) Collecting idna<3,>=2.5 Downloading idna-2.9-py2.py3-none-any.whl (58 kB) Collecting chardet<4,>=3.0.2 Downloading chardet-3.0.4-py2.py3-none-any.whl (133 kB) Collecting pytz>=2015.7 Downloading pytz-2019.3-py2.py3-none-any.whl (509 kB) Collecting pyparsing>=2.0.2 Downloading pyparsing-2.4.6-py2.py3-none-any.whl (67 kB) Building wheels for collected packages: mock, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23754 sha256=94173e09f1efa8036d4bbad07d2e919274b6bd8011fcd744eabc54bd19353522 Stored in directory: /tmp/pip-ephem-wheel-cache-_2bqwjz1/wheels/16/03/37/f0a64ab894c9102906f192db1a4071b7592292ad661563c69b Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491058 sha256=863f8b3274cbf964a009ff9768a4781147a73ed35cbc605f0dc8a10274c37ec0 Stored in directory: /tmp/pip-ephem-wheel-cache-_2bqwjz1/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0 Successfully built mock future Installing collected packages: Pygments, setuptools, docutils, mock, pillow, alabaster, future, commonmark, MarkupSafe, Jinja2, sphinxcontrib-websupport, imagesize, six, snowballstemmer, urllib3, certifi, idna, chardet, requests, pytz, babel, pyparsing, packaging, sphinx, recommonmark, sphinx-rtd-theme, readthedocs-sphinx-ext Attempting uninstall: setuptools Found existing installation: setuptools 46.1.3 Uninstalling setuptools-46.1.3: Successfully uninstalled setuptools-46.1.3 Successfully installed Jinja2-2.11.1 MarkupSafe-1.1.1 Pygments-2.3.1 alabaster-0.7.12 babel-2.8.0 certifi-2019.11.28 chardet-3.0.4 commonmark-0.8.1 docutils-0.14 future-0.18.2 idna-2.9 imagesize-1.2.0 mock-1.0.1 packaging-20.3 pillow-5.4.1 pyparsing-2.4.6 pytz-2019.3 readthedocs-sphinx-ext-1.0.1 recommonmark-0.5.0 requests-2.23.0 setuptools-41.0.1 six-1.14.0 snowballstemmer-2.0.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-websupport-1.2.1 urllib3-1.25.8 [rtd-command-info] start-time: 2020-03-26T11:37:38.623659Z, end-time: 2020-03-26T11:37:53.768936Z, duration: 15, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r requirements.txt Collecting cmake>=3.11.0 Downloading cmake-3.16.3-py3-none-manylinux2010_x86_64.whl (17.0 MB) Collecting cython>=0.29 Downloading Cython-0.29.16-cp37-cp37m-manylinux1_x86_64.whl (2.1 MB) Collecting numpy==1.16.* Downloading numpy-1.16.6-cp37-cp37m-manylinux1_x86_64.whl (17.3 MB) Requirement already satisfied: setuptools>=18.0.1 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 4)) (41.0.1) Collecting setuptools-scm>=1.5.4 Downloading setuptools_scm-3.5.0-py2.py3-none-any.whl (26 kB) Requirement already satisfied: wheel>=0.30 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 6)) (0.34.2) Collecting psutil Downloading psutil-5.7.0.tar.gz (449 kB) Building wheels for collected packages: psutil Building wheel for psutil (setup.py): started Building wheel for psutil (setup.py): finished with status 'done' Created wheel for psutil: filename=psutil-5.7.0-cp37-cp37m-linux_x86_64.whl size=276462 sha256=7588db69023e6328cdff91bf86d35476d5449b00ce22952af5ce9e15138c86c0 Stored in directory: /tmp/pip-ephem-wheel-cache-56ti3hxy/wheels/b6/e7/50/aee9cc966163d74430f13f208171dee22f11efa4a4a826661c Successfully built psutil Installing collected packages: cmake, cython, numpy, setuptools-scm, psutil Successfully installed cmake-3.16.3 cython-0.29.16 numpy-1.16.6 psutil-5.7.0 setuptools-scm-3.5.0 [rtd-command-info] start-time: 2020-03-26T11:37:53.927983Z, end-time: 2020-03-26T12:37:22.537671Z, duration: 3568, exit-code: 137 python ./setup.py install --force libtiledb_exists checking 'library_dirs': [] libtiledb_exists found: 'None' running install running bdist_egg GNU Make 4.1 Built for x86_64-pc-linux-gnu Copyright (C) 1988-2014 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. -- The C compiler identification is GNU 7.4.0 -- The CXX compiler identification is GNU 7.4.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Starting TileDB superbuild. -- Found Bzip2: /usr/lib/x86_64-linux-gnu/libbz2.so -- Could NOT find LZ4 (missing: LZ4_LIBRARIES LZ4_INCLUDE_DIR) -- Adding LZ4 as an external project -- Could NOT find Spdlog (missing: SPDLOG_INCLUDE_DIR) -- Adding Spdlog as an external project -- Found Zlib: /usr/lib/x86_64-linux-gnu/libz.so -- Could NOT find Zstd (missing: ZSTD_LIBRARIES ZSTD_INCLUDE_DIR) -- Adding Zstd as an external project -- Found OpenSSL: /usr/lib/x86_64-linux-gnu/libssl.so -- OpenSSL crypto: /usr/lib/x86_64-linux-gnu/libcrypto.so -- root: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/install;/usr/local/opt/openssl -- Could NOT find CURL (missing: CURL_LIBRARY CURL_INCLUDE_DIR) -- Could NOT find Curl (missing: CURL_LIBRARIES CURL_INCLUDE_DIR) -- Adding Curl as an external project CMake Warning at cmake/Modules/FindCurl_EP.cmake:106 (message): TileDB FindOpenSSL_EP did not set TILEDB_OPENSSL_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) CMake Warning at cmake/Modules/FindCurl_EP.cmake:118 (message): TileDB FindZlib_EP did not set TILEDB_ZLIB_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) -- Could NOT find AWSSDK -- Adding AWSSDK as an external project -- Could NOT find TBB (missing: TBB_LIBRARIES TBB_INCLUDE_DIR) -- Adding TBB as an external project -- Not found clang-tidy -- Not found clang-format -- Found Doxygen: /usr/bin/doxygen (found version "1.8.13") found components: doxygen dot -- Install prefix is /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/dist -- Configuring done -- Generating done -- Build files have been written to: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build Scanning dependencies of target ep_curl [ 1%] Creating directories for 'ep_curl' [ 3%] Performing download step (download, verify and extract) for 'ep_curl' -- ep_curl download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-download-*.log [ 5%] No patch step for 'ep_curl' [ 7%] No update step for 'ep_curl' [ 8%] Performing configure step for 'ep_curl' -- ep_curl configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-configure-*.log [ 10%] Performing build step for 'ep_curl' -- ep_curl build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-build-*.log [ 12%] Performing install step for 'ep_curl' -- ep_curl install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-install-*.log [ 14%] Completed 'ep_curl' [ 14%] Built target ep_curl Scanning dependencies of target ep_lz4 [ 16%] Creating directories for 'ep_lz4' [ 17%] Performing download step (download, verify and extract) for 'ep_lz4' -- ep_lz4 download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_lz4-stamp/ep_lz4-download-*.log [ 19%] No patch step for 'ep_lz4' [ 21%] No update step for 'ep_lz4' [ 23%] Performing configure step for 'ep_lz4' -- ep_lz4 configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_lz4-stamp/ep_lz4-configure-*.log [ 25%] Performing build step for 'ep_lz4' -- ep_lz4 build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_lz4-stamp/ep_lz4-build-*.log [ 26%] Performing install step for 'ep_lz4' -- ep_lz4 install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_lz4-stamp/ep_lz4-install-*.log [ 28%] Completed 'ep_lz4' [ 28%] Built target ep_lz4 Scanning dependencies of target ep_zstd [ 30%] Creating directories for 'ep_zstd' [ 32%] Performing download step (download, verify and extract) for 'ep_zstd' -- ep_zstd download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-download-*.log [ 33%] No patch step for 'ep_zstd' [ 35%] No update step for 'ep_zstd' [ 37%] Performing configure step for 'ep_zstd' -- ep_zstd configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-configure-*.log [ 39%] Performing build step for 'ep_zstd' -- ep_zstd build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-build-*.log [ 41%] Performing install step for 'ep_zstd' -- ep_zstd install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-install-*.log [ 42%] Completed 'ep_zstd' [ 42%] Built target ep_zstd Scanning dependencies of target ep_tbb [ 44%] Creating directories for 'ep_tbb' [ 46%] Performing download step (download, verify and extract) for 'ep_tbb' -- ep_tbb download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_tbb-stamp/ep_tbb-download-*.log [ 48%] No patch step for 'ep_tbb' [ 50%] No update step for 'ep_tbb' [ 51%] No configure step for 'ep_tbb' [ 53%] No build step for 'ep_tbb' [ 55%] No install step for 'ep_tbb' [ 57%] Completed 'ep_tbb' [ 57%] Built target ep_tbb Scanning dependencies of target ep_awssdk [ 58%] Creating directories for 'ep_awssdk' [ 60%] Performing download step (download, verify and extract) for 'ep_awssdk' -- ep_awssdk download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-download-*.log [ 62%] No patch step for 'ep_awssdk' [ 64%] No update step for 'ep_awssdk' [ 66%] Performing configure step for 'ep_awssdk' -- ep_awssdk configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-configure-*.log [ 67%] Performing build step for 'ep_awssdk' Command killed due to excessive memory consumption [rtd-command-info] start-time: 2020-03-26T12:37:17.579899Z, end-time: 2020-03-26T12:37:19.049081Z, duration: 1, exit-code: 0 git clone --no-single-branch --depth 50 https://github.com/TileDB-Inc/TileDB-Py.git . Cloning into '.'... [rtd-command-info] start-time: 2020-03-26T12:37:19.443822Z, end-time: 2020-03-26T12:37:19.748446Z, duration: 0, exit-code: 0 git checkout --force de2aff00b97498420199a9d16c8375df70e94780 Note: checking out 'de2aff00b97498420199a9d16c8375df70e94780'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at de2aff0 Add error check for libtiledb build validity in setup.py [rtd-command-info] start-time: 2020-03-26T12:37:19.913904Z, end-time: 2020-03-26T12:37:20.223272Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2020-03-26T12:37:21.775325Z, end-time: 2020-03-26T12:37:26.124103Z, duration: 4, exit-code: 0 python3.7 -mvirtualenv Using base prefix '/home/docs/.pyenv/versions/3.7.3' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2020-03-26T12:37:26.329193Z, end-time: 2020-03-26T12:37:27.273350Z, duration: 0, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip Requirement already up-to-date: pip in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (20.0.2) [rtd-command-info] start-time: 2020-03-26T12:37:27.460143Z, end-time: 2020-03-26T12:37:39.266123Z, duration: 11, exit-code: 0 python -m pip install --upgrade --no-cache-dir Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1 Collecting Pygments==2.3.1 Downloading Pygments-2.3.1-py2.py3-none-any.whl (849 kB) Collecting setuptools==41.0.1 Downloading setuptools-41.0.1-py2.py3-none-any.whl (575 kB) Collecting docutils==0.14 Downloading docutils-0.14-py3-none-any.whl (543 kB) Collecting mock==1.0.1 Downloading mock-1.0.1.tar.gz (818 kB) Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.5-py2.py3-none-any.whl (3.1 MB) Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) Collecting readthedocs-sphinx-ext<1.1 Downloading readthedocs_sphinx_ext-1.0.1-py2.py3-none-any.whl (14 kB) Collecting future Downloading future-0.18.2.tar.gz (829 kB) Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.0.0-py2.py3-none-any.whl (97 kB) Collecting six>=1.5 Downloading six-1.14.0-py2.py3-none-any.whl (10 kB) Collecting packaging Downloading packaging-20.3-py2.py3-none-any.whl (37 kB) Collecting babel!=2.0,>=1.3 Downloading Babel-2.8.0-py2.py3-none-any.whl (8.6 MB) Collecting imagesize Downloading imagesize-1.2.0-py2.py3-none-any.whl (4.8 kB) Collecting Jinja2>=2.3 Downloading Jinja2-2.11.1-py2.py3-none-any.whl (126 kB) Collecting requests>=2.0.0 Downloading requests-2.23.0-py2.py3-none-any.whl (58 kB) Collecting sphinxcontrib-websupport Downloading sphinxcontrib_websupport-1.2.1-py2.py3-none-any.whl (39 kB) Collecting pyparsing>=2.0.2 Downloading pyparsing-2.4.6-py2.py3-none-any.whl (67 kB) Collecting pytz>=2015.7 Downloading pytz-2019.3-py2.py3-none-any.whl (509 kB) Collecting MarkupSafe>=0.23 Downloading MarkupSafe-1.1.1-cp37-cp37m-manylinux1_x86_64.whl (27 kB) Collecting chardet<4,>=3.0.2 Downloading chardet-3.0.4-py2.py3-none-any.whl (133 kB) Collecting idna<3,>=2.5 Downloading idna-2.9-py2.py3-none-any.whl (58 kB) Collecting certifi>=2017.4.17 Downloading certifi-2019.11.28-py2.py3-none-any.whl (156 kB) Collecting urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 Downloading urllib3-1.25.8-py2.py3-none-any.whl (125 kB) Building wheels for collected packages: mock, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23754 sha256=dbaf819d61253035fb92722f321c58073f00f61d440fafd8ba203371d73b6dfa Stored in directory: /tmp/pip-ephem-wheel-cache-nw8mhmt9/wheels/16/03/37/f0a64ab894c9102906f192db1a4071b7592292ad661563c69b Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491058 sha256=ebce24dd3a5e558705c2b1cb7554e679bd242a9b0a983a3af769c6de711ba5ca Stored in directory: /tmp/pip-ephem-wheel-cache-nw8mhmt9/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0 Successfully built mock future Installing collected packages: Pygments, setuptools, docutils, mock, pillow, alabaster, future, commonmark, snowballstemmer, six, pyparsing, packaging, pytz, babel, imagesize, MarkupSafe, Jinja2, chardet, idna, certifi, urllib3, requests, sphinxcontrib-websupport, sphinx, recommonmark, sphinx-rtd-theme, readthedocs-sphinx-ext Attempting uninstall: setuptools Found existing installation: setuptools 46.1.3 Uninstalling setuptools-46.1.3: Successfully uninstalled setuptools-46.1.3 Successfully installed Jinja2-2.11.1 MarkupSafe-1.1.1 Pygments-2.3.1 alabaster-0.7.12 babel-2.8.0 certifi-2019.11.28 chardet-3.0.4 commonmark-0.8.1 docutils-0.14 future-0.18.2 idna-2.9 imagesize-1.2.0 mock-1.0.1 packaging-20.3 pillow-5.4.1 pyparsing-2.4.6 pytz-2019.3 readthedocs-sphinx-ext-1.0.1 recommonmark-0.5.0 requests-2.23.0 setuptools-41.0.1 six-1.14.0 snowballstemmer-2.0.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-websupport-1.2.1 urllib3-1.25.8 [rtd-command-info] start-time: 2020-03-26T12:37:39.435068Z, end-time: 2020-03-26T12:37:51.481576Z, duration: 12, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r requirements.txt Collecting cmake>=3.11.0 Downloading cmake-3.16.3-py3-none-manylinux2010_x86_64.whl (17.0 MB) Collecting cython>=0.29 Downloading Cython-0.29.16-cp37-cp37m-manylinux1_x86_64.whl (2.1 MB) Collecting numpy==1.16.* Downloading numpy-1.16.6-cp37-cp37m-manylinux1_x86_64.whl (17.3 MB) Requirement already satisfied: setuptools>=18.0.1 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 4)) (41.0.1) Collecting setuptools-scm>=1.5.4 Downloading setuptools_scm-3.5.0-py2.py3-none-any.whl (26 kB) Requirement already satisfied: wheel>=0.30 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 6)) (0.34.2) Collecting psutil Downloading psutil-5.7.0.tar.gz (449 kB) Building wheels for collected packages: psutil Building wheel for psutil (setup.py): started Building wheel for psutil (setup.py): finished with status 'done' Created wheel for psutil: filename=psutil-5.7.0-cp37-cp37m-linux_x86_64.whl size=276462 sha256=cedcd46eea18d65e3cd81a2ea78887198cd8c167fa8e7e2825391c664de82bfb Stored in directory: /tmp/pip-ephem-wheel-cache-71duhqf_/wheels/b6/e7/50/aee9cc966163d74430f13f208171dee22f11efa4a4a826661c Successfully built psutil Installing collected packages: cmake, cython, numpy, setuptools-scm, psutil Successfully installed cmake-3.16.3 cython-0.29.16 numpy-1.16.6 psutil-5.7.0 setuptools-scm-3.5.0 [rtd-command-info] start-time: 2020-03-26T12:37:51.660853Z, end-time: 2020-03-26T13:37:23.212095Z, duration: 3571, exit-code: 137 python ./setup.py install --force libtiledb_exists checking 'library_dirs': [] libtiledb_exists found: 'None' running install running bdist_egg GNU Make 4.1 Built for x86_64-pc-linux-gnu Copyright (C) 1988-2014 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. -- The C compiler identification is GNU 7.4.0 -- The CXX compiler identification is GNU 7.4.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Starting TileDB superbuild. -- Found Bzip2: /usr/lib/x86_64-linux-gnu/libbz2.so -- Could NOT find LZ4 (missing: LZ4_LIBRARIES LZ4_INCLUDE_DIR) -- Adding LZ4 as an external project -- Could NOT find Spdlog (missing: SPDLOG_INCLUDE_DIR) -- Adding Spdlog as an external project -- Found Zlib: /usr/lib/x86_64-linux-gnu/libz.so -- Could NOT find Zstd (missing: ZSTD_LIBRARIES ZSTD_INCLUDE_DIR) -- Adding Zstd as an external project -- Found OpenSSL: /usr/lib/x86_64-linux-gnu/libssl.so -- OpenSSL crypto: /usr/lib/x86_64-linux-gnu/libcrypto.so -- root: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/install;/usr/local/opt/openssl -- Could NOT find CURL (missing: CURL_LIBRARY CURL_INCLUDE_DIR) -- Could NOT find Curl (missing: CURL_LIBRARIES CURL_INCLUDE_DIR) -- Adding Curl as an external project CMake Warning at cmake/Modules/FindCurl_EP.cmake:106 (message): TileDB FindOpenSSL_EP did not set TILEDB_OPENSSL_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) CMake Warning at cmake/Modules/FindCurl_EP.cmake:118 (message): TileDB FindZlib_EP did not set TILEDB_ZLIB_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) -- Could NOT find AWSSDK -- Adding AWSSDK as an external project -- Could NOT find TBB (missing: TBB_LIBRARIES TBB_INCLUDE_DIR) -- Adding TBB as an external project -- Not found clang-tidy -- Not found clang-format -- Found Doxygen: /usr/bin/doxygen (found version "1.8.13") found components: doxygen dot -- Install prefix is /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/dist -- Configuring done -- Generating done -- Build files have been written to: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build Scanning dependencies of target ep_curl [ 1%] Creating directories for 'ep_curl' [ 3%] Performing download step (download, verify and extract) for 'ep_curl' -- ep_curl download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-download-*.log [ 5%] No patch step for 'ep_curl' [ 7%] No update step for 'ep_curl' [ 8%] Performing configure step for 'ep_curl' -- ep_curl configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-configure-*.log [ 10%] Performing build step for 'ep_curl' -- ep_curl build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-build-*.log [ 12%] Performing install step for 'ep_curl' -- ep_curl install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-install-*.log [ 14%] Completed 'ep_curl' [ 14%] Built target ep_curl Scanning dependencies of target ep_awssdk [ 16%] Creating directories for 'ep_awssdk' [ 17%] Performing download step (download, verify and extract) for 'ep_awssdk' -- ep_awssdk download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-download-*.log [ 19%] No patch step for 'ep_awssdk' [ 21%] No update step for 'ep_awssdk' [ 23%] Performing configure step for 'ep_awssdk' -- ep_awssdk configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-configure-*.log [ 25%] Performing build step for 'ep_awssdk' Command killed due to excessive memory consumption [rtd-command-info] start-time: 2020-03-26T13:37:17.998382Z, end-time: 2020-03-26T13:37:19.238524Z, duration: 1, exit-code: 0 git clone --no-single-branch --depth 50 https://github.com/TileDB-Inc/TileDB-Py.git . Cloning into '.'... [rtd-command-info] start-time: 2020-03-26T13:37:19.656035Z, end-time: 2020-03-26T13:37:19.987521Z, duration: 0, exit-code: 0 git checkout --force de2aff00b97498420199a9d16c8375df70e94780 Note: checking out 'de2aff00b97498420199a9d16c8375df70e94780'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at de2aff0 Add error check for libtiledb build validity in setup.py [rtd-command-info] start-time: 2020-03-26T13:37:20.195001Z, end-time: 2020-03-26T13:37:20.515960Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2020-03-26T13:37:22.349591Z, end-time: 2020-03-26T13:37:26.789154Z, duration: 4, exit-code: 0 python3.7 -mvirtualenv Using base prefix '/home/docs/.pyenv/versions/3.7.3' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2020-03-26T13:37:26.951101Z, end-time: 2020-03-26T13:37:27.922488Z, duration: 0, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip Requirement already up-to-date: pip in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (20.0.2) [rtd-command-info] start-time: 2020-03-26T13:37:28.103371Z, end-time: 2020-03-26T13:37:39.931526Z, duration: 11, exit-code: 0 python -m pip install --upgrade --no-cache-dir Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1 Collecting Pygments==2.3.1 Downloading Pygments-2.3.1-py2.py3-none-any.whl (849 kB) Collecting setuptools==41.0.1 Downloading setuptools-41.0.1-py2.py3-none-any.whl (575 kB) Collecting docutils==0.14 Downloading docutils-0.14-py3-none-any.whl (543 kB) Collecting mock==1.0.1 Downloading mock-1.0.1.tar.gz (818 kB) Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.5-py2.py3-none-any.whl (3.1 MB) Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) Collecting readthedocs-sphinx-ext<1.1 Downloading readthedocs_sphinx_ext-1.0.1-py2.py3-none-any.whl (14 kB) Collecting future Downloading future-0.18.2.tar.gz (829 kB) Collecting imagesize Downloading imagesize-1.2.0-py2.py3-none-any.whl (4.8 kB) Collecting requests>=2.0.0 Downloading requests-2.23.0-py2.py3-none-any.whl (58 kB) Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.0.0-py2.py3-none-any.whl (97 kB) Collecting Jinja2>=2.3 Downloading Jinja2-2.11.1-py2.py3-none-any.whl (126 kB) Collecting babel!=2.0,>=1.3 Downloading Babel-2.8.0-py2.py3-none-any.whl (8.6 MB) Collecting packaging Downloading packaging-20.3-py2.py3-none-any.whl (37 kB) Collecting sphinxcontrib-websupport Downloading sphinxcontrib_websupport-1.2.1-py2.py3-none-any.whl (39 kB) Collecting six>=1.5 Downloading six-1.14.0-py2.py3-none-any.whl (10 kB) Collecting idna<3,>=2.5 Downloading idna-2.9-py2.py3-none-any.whl (58 kB) Collecting urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 Downloading urllib3-1.25.8-py2.py3-none-any.whl (125 kB) Collecting chardet<4,>=3.0.2 Downloading chardet-3.0.4-py2.py3-none-any.whl (133 kB) Collecting certifi>=2017.4.17 Downloading certifi-2019.11.28-py2.py3-none-any.whl (156 kB) Collecting MarkupSafe>=0.23 Downloading MarkupSafe-1.1.1-cp37-cp37m-manylinux1_x86_64.whl (27 kB) Collecting pytz>=2015.7 Downloading pytz-2019.3-py2.py3-none-any.whl (509 kB) Collecting pyparsing>=2.0.2 Downloading pyparsing-2.4.6-py2.py3-none-any.whl (67 kB) Building wheels for collected packages: mock, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23754 sha256=2bad8f8a743a235a41d05abeda15e82ead3c8dcdcc1cb5d34227fc5773ace8b5 Stored in directory: /tmp/pip-ephem-wheel-cache-fu_ag55p/wheels/16/03/37/f0a64ab894c9102906f192db1a4071b7592292ad661563c69b Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491058 sha256=7d2060001d4f7e7b71245ec9bf89108b18b90685464826fcc4e331d52bcaef28 Stored in directory: /tmp/pip-ephem-wheel-cache-fu_ag55p/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0 Successfully built mock future Installing collected packages: Pygments, setuptools, docutils, mock, pillow, alabaster, future, commonmark, imagesize, idna, urllib3, chardet, certifi, requests, snowballstemmer, MarkupSafe, Jinja2, pytz, babel, six, pyparsing, packaging, sphinxcontrib-websupport, sphinx, recommonmark, sphinx-rtd-theme, readthedocs-sphinx-ext Attempting uninstall: setuptools Found existing installation: setuptools 46.1.3 Uninstalling setuptools-46.1.3: Successfully uninstalled setuptools-46.1.3 Successfully installed Jinja2-2.11.1 MarkupSafe-1.1.1 Pygments-2.3.1 alabaster-0.7.12 babel-2.8.0 certifi-2019.11.28 chardet-3.0.4 commonmark-0.8.1 docutils-0.14 future-0.18.2 idna-2.9 imagesize-1.2.0 mock-1.0.1 packaging-20.3 pillow-5.4.1 pyparsing-2.4.6 pytz-2019.3 readthedocs-sphinx-ext-1.0.1 recommonmark-0.5.0 requests-2.23.0 setuptools-41.0.1 six-1.14.0 snowballstemmer-2.0.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-websupport-1.2.1 urllib3-1.25.8 [rtd-command-info] start-time: 2020-03-26T13:37:40.446792Z, end-time: 2020-03-26T13:37:51.839500Z, duration: 11, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r requirements.txt Collecting cmake>=3.11.0 Downloading cmake-3.16.3-py3-none-manylinux2010_x86_64.whl (17.0 MB) Collecting cython>=0.29 Downloading Cython-0.29.16-cp37-cp37m-manylinux1_x86_64.whl (2.1 MB) Collecting numpy==1.16.* Downloading numpy-1.16.6-cp37-cp37m-manylinux1_x86_64.whl (17.3 MB) Requirement already satisfied: setuptools>=18.0.1 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 4)) (41.0.1) Collecting setuptools-scm>=1.5.4 Downloading setuptools_scm-3.5.0-py2.py3-none-any.whl (26 kB) Requirement already satisfied: wheel>=0.30 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 6)) (0.34.2) Collecting psutil Downloading psutil-5.7.0.tar.gz (449 kB) Building wheels for collected packages: psutil Building wheel for psutil (setup.py): started Building wheel for psutil (setup.py): finished with status 'done' Created wheel for psutil: filename=psutil-5.7.0-cp37-cp37m-linux_x86_64.whl size=276462 sha256=636f6be33932b5312754aaf99ad20bafd6965dd21a88b74047908af1d6f9d26b Stored in directory: /tmp/pip-ephem-wheel-cache-skrr7h0f/wheels/b6/e7/50/aee9cc966163d74430f13f208171dee22f11efa4a4a826661c Successfully built psutil Installing collected packages: cmake, cython, numpy, setuptools-scm, psutil Successfully installed cmake-3.16.3 cython-0.29.16 numpy-1.16.6 psutil-5.7.0 setuptools-scm-3.5.0 [rtd-command-info] start-time: 2020-03-26T13:37:52.288935Z, end-time: 2020-03-26T14:37:25.061110Z, duration: 3572, exit-code: 137 python ./setup.py install --force libtiledb_exists checking 'library_dirs': [] libtiledb_exists found: 'None' running install running bdist_egg GNU Make 4.1 Built for x86_64-pc-linux-gnu Copyright (C) 1988-2014 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. -- The C compiler identification is GNU 7.4.0 -- The CXX compiler identification is GNU 7.4.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Starting TileDB superbuild. -- Found Bzip2: /usr/lib/x86_64-linux-gnu/libbz2.so -- Could NOT find LZ4 (missing: LZ4_LIBRARIES LZ4_INCLUDE_DIR) -- Adding LZ4 as an external project -- Could NOT find Spdlog (missing: SPDLOG_INCLUDE_DIR) -- Adding Spdlog as an external project -- Found Zlib: /usr/lib/x86_64-linux-gnu/libz.so -- Could NOT find Zstd (missing: ZSTD_LIBRARIES ZSTD_INCLUDE_DIR) -- Adding Zstd as an external project -- Found OpenSSL: /usr/lib/x86_64-linux-gnu/libssl.so -- OpenSSL crypto: /usr/lib/x86_64-linux-gnu/libcrypto.so -- root: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/install;/usr/local/opt/openssl -- Could NOT find CURL (missing: CURL_LIBRARY CURL_INCLUDE_DIR) -- Could NOT find Curl (missing: CURL_LIBRARIES CURL_INCLUDE_DIR) -- Adding Curl as an external project CMake Warning at cmake/Modules/FindCurl_EP.cmake:106 (message): TileDB FindOpenSSL_EP did not set TILEDB_OPENSSL_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) CMake Warning at cmake/Modules/FindCurl_EP.cmake:118 (message): TileDB FindZlib_EP did not set TILEDB_ZLIB_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) -- Could NOT find AWSSDK -- Adding AWSSDK as an external project -- Could NOT find TBB (missing: TBB_LIBRARIES TBB_INCLUDE_DIR) -- Adding TBB as an external project -- Not found clang-tidy -- Not found clang-format -- Found Doxygen: /usr/bin/doxygen (found version "1.8.13") found components: doxygen dot -- Install prefix is /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/dist -- Configuring done -- Generating done -- Build files have been written to: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build Scanning dependencies of target ep_curl [ 1%] Creating directories for 'ep_curl' [ 3%] Performing download step (download, verify and extract) for 'ep_curl' -- ep_curl download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-download-*.log [ 5%] No patch step for 'ep_curl' [ 7%] No update step for 'ep_curl' [ 8%] Performing configure step for 'ep_curl' -- ep_curl configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-configure-*.log [ 10%] Performing build step for 'ep_curl' -- ep_curl build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-build-*.log [ 12%] Performing install step for 'ep_curl' -- ep_curl install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-install-*.log [ 14%] Completed 'ep_curl' [ 14%] Built target ep_curl Scanning dependencies of target ep_awssdk [ 16%] Creating directories for 'ep_awssdk' [ 17%] Performing download step (download, verify and extract) for 'ep_awssdk' -- ep_awssdk download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-download-*.log [ 19%] No patch step for 'ep_awssdk' [ 21%] No update step for 'ep_awssdk' [ 23%] Performing configure step for 'ep_awssdk' -- ep_awssdk configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-configure-*.log [ 25%] Performing build step for 'ep_awssdk' Command killed due to excessive memory consumption [rtd-command-info] start-time: 2020-03-26T14:37:18.680518Z, end-time: 2020-03-26T14:37:19.946975Z, duration: 1, exit-code: 0 git clone --no-single-branch --depth 50 https://github.com/TileDB-Inc/TileDB-Py.git . Cloning into '.'... [rtd-command-info] start-time: 2020-03-26T14:37:20.372411Z, end-time: 2020-03-26T14:37:20.705916Z, duration: 0, exit-code: 0 git checkout --force de2aff00b97498420199a9d16c8375df70e94780 Note: checking out 'de2aff00b97498420199a9d16c8375df70e94780'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at de2aff0 Add error check for libtiledb build validity in setup.py [rtd-command-info] start-time: 2020-03-26T14:37:20.864329Z, end-time: 2020-03-26T14:37:21.188778Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2020-03-26T14:37:22.659925Z, end-time: 2020-03-26T14:37:27.729162Z, duration: 5, exit-code: 0 python3.7 -mvirtualenv Using base prefix '/home/docs/.pyenv/versions/3.7.3' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2020-03-26T14:37:27.887049Z, end-time: 2020-03-26T14:37:28.917961Z, duration: 1, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip Requirement already up-to-date: pip in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (20.0.2) [rtd-command-info] start-time: 2020-03-26T14:37:29.077849Z, end-time: 2020-03-26T14:37:41.842374Z, duration: 12, exit-code: 0 python -m pip install --upgrade --no-cache-dir Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1 Collecting Pygments==2.3.1 Downloading Pygments-2.3.1-py2.py3-none-any.whl (849 kB) Collecting setuptools==41.0.1 Downloading setuptools-41.0.1-py2.py3-none-any.whl (575 kB) Collecting docutils==0.14 Downloading docutils-0.14-py3-none-any.whl (543 kB) Collecting mock==1.0.1 Downloading mock-1.0.1.tar.gz (818 kB) Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.5-py2.py3-none-any.whl (3.1 MB) Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) Collecting readthedocs-sphinx-ext<1.1 Downloading readthedocs_sphinx_ext-1.0.1-py2.py3-none-any.whl (14 kB) Collecting future Downloading future-0.18.2.tar.gz (829 kB) Collecting Jinja2>=2.3 Downloading Jinja2-2.11.1-py2.py3-none-any.whl (126 kB) Collecting six>=1.5 Downloading six-1.14.0-py2.py3-none-any.whl (10 kB) Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.0.0-py2.py3-none-any.whl (97 kB) Collecting imagesize Downloading imagesize-1.2.0-py2.py3-none-any.whl (4.8 kB) Collecting packaging Downloading packaging-20.3-py2.py3-none-any.whl (37 kB) Collecting requests>=2.0.0 Downloading requests-2.23.0-py2.py3-none-any.whl (58 kB) Collecting sphinxcontrib-websupport Downloading sphinxcontrib_websupport-1.2.1-py2.py3-none-any.whl (39 kB) Collecting babel!=2.0,>=1.3 Downloading Babel-2.8.0-py2.py3-none-any.whl (8.6 MB) Collecting MarkupSafe>=0.23 Downloading MarkupSafe-1.1.1-cp37-cp37m-manylinux1_x86_64.whl (27 kB) Collecting pyparsing>=2.0.2 Downloading pyparsing-2.4.6-py2.py3-none-any.whl (67 kB) Collecting chardet<4,>=3.0.2 Downloading chardet-3.0.4-py2.py3-none-any.whl (133 kB) Collecting certifi>=2017.4.17 Downloading certifi-2019.11.28-py2.py3-none-any.whl (156 kB) Collecting idna<3,>=2.5 Downloading idna-2.9-py2.py3-none-any.whl (58 kB) Collecting urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 Downloading urllib3-1.25.8-py2.py3-none-any.whl (125 kB) Collecting pytz>=2015.7 Downloading pytz-2019.3-py2.py3-none-any.whl (509 kB) Building wheels for collected packages: mock, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23754 sha256=911a69fd238e92f89988feeb850b33c0ed28b3d83ef9450ab33b52c865b0ad59 Stored in directory: /tmp/pip-ephem-wheel-cache-nufh20d1/wheels/16/03/37/f0a64ab894c9102906f192db1a4071b7592292ad661563c69b Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491058 sha256=ae59c77d8856dcca00f39c5cd8e713bfacef72c8576720f679cbf12e3e30d303 Stored in directory: /tmp/pip-ephem-wheel-cache-nufh20d1/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0 Successfully built mock future Installing collected packages: Pygments, setuptools, docutils, mock, pillow, alabaster, future, commonmark, MarkupSafe, Jinja2, six, snowballstemmer, imagesize, pyparsing, packaging, chardet, certifi, idna, urllib3, requests, sphinxcontrib-websupport, pytz, babel, sphinx, recommonmark, sphinx-rtd-theme, readthedocs-sphinx-ext Attempting uninstall: setuptools Found existing installation: setuptools 46.1.3 Uninstalling setuptools-46.1.3: Successfully uninstalled setuptools-46.1.3 Successfully installed Jinja2-2.11.1 MarkupSafe-1.1.1 Pygments-2.3.1 alabaster-0.7.12 babel-2.8.0 certifi-2019.11.28 chardet-3.0.4 commonmark-0.8.1 docutils-0.14 future-0.18.2 idna-2.9 imagesize-1.2.0 mock-1.0.1 packaging-20.3 pillow-5.4.1 pyparsing-2.4.6 pytz-2019.3 readthedocs-sphinx-ext-1.0.1 recommonmark-0.5.0 requests-2.23.0 setuptools-41.0.1 six-1.14.0 snowballstemmer-2.0.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-websupport-1.2.1 urllib3-1.25.8 [rtd-command-info] start-time: 2020-03-26T14:37:42.060301Z, end-time: 2020-03-26T14:37:54.777884Z, duration: 12, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r requirements.txt Collecting cmake>=3.11.0 Downloading cmake-3.16.3-py3-none-manylinux2010_x86_64.whl (17.0 MB) Collecting cython>=0.29 Downloading Cython-0.29.16-cp37-cp37m-manylinux1_x86_64.whl (2.1 MB) Collecting numpy==1.16.* Downloading numpy-1.16.6-cp37-cp37m-manylinux1_x86_64.whl (17.3 MB) Requirement already satisfied: setuptools>=18.0.1 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 4)) (41.0.1) Collecting setuptools-scm>=1.5.4 Downloading setuptools_scm-3.5.0-py2.py3-none-any.whl (26 kB) Requirement already satisfied: wheel>=0.30 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 6)) (0.34.2) Collecting psutil Downloading psutil-5.7.0.tar.gz (449 kB) Building wheels for collected packages: psutil Building wheel for psutil (setup.py): started Building wheel for psutil (setup.py): finished with status 'done' Created wheel for psutil: filename=psutil-5.7.0-cp37-cp37m-linux_x86_64.whl size=276463 sha256=066a157f9a9a08b599ce5cbfae503c4ec363c1b7bfcef0080821b1f31b07ee8e Stored in directory: /tmp/pip-ephem-wheel-cache-oydyc8l_/wheels/b6/e7/50/aee9cc966163d74430f13f208171dee22f11efa4a4a826661c Successfully built psutil Installing collected packages: cmake, cython, numpy, setuptools-scm, psutil Successfully installed cmake-3.16.3 cython-0.29.16 numpy-1.16.6 psutil-5.7.0 setuptools-scm-3.5.0 [rtd-command-info] start-time: 2020-03-26T14:37:54.940159Z, end-time: 2020-03-26T15:37:24.546253Z, duration: 3569, exit-code: 137 python ./setup.py install --force libtiledb_exists checking 'library_dirs': [] libtiledb_exists found: 'None' running install running bdist_egg GNU Make 4.1 Built for x86_64-pc-linux-gnu Copyright (C) 1988-2014 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. -- The C compiler identification is GNU 7.4.0 -- The CXX compiler identification is GNU 7.4.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Starting TileDB superbuild. -- Found Bzip2: /usr/lib/x86_64-linux-gnu/libbz2.so -- Could NOT find LZ4 (missing: LZ4_LIBRARIES LZ4_INCLUDE_DIR) -- Adding LZ4 as an external project -- Could NOT find Spdlog (missing: SPDLOG_INCLUDE_DIR) -- Adding Spdlog as an external project -- Found Zlib: /usr/lib/x86_64-linux-gnu/libz.so -- Could NOT find Zstd (missing: ZSTD_LIBRARIES ZSTD_INCLUDE_DIR) -- Adding Zstd as an external project -- Found OpenSSL: /usr/lib/x86_64-linux-gnu/libssl.so -- OpenSSL crypto: /usr/lib/x86_64-linux-gnu/libcrypto.so -- root: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/install;/usr/local/opt/openssl -- Could NOT find CURL (missing: CURL_LIBRARY CURL_INCLUDE_DIR) -- Could NOT find Curl (missing: CURL_LIBRARIES CURL_INCLUDE_DIR) -- Adding Curl as an external project CMake Warning at cmake/Modules/FindCurl_EP.cmake:106 (message): TileDB FindOpenSSL_EP did not set TILEDB_OPENSSL_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) CMake Warning at cmake/Modules/FindCurl_EP.cmake:118 (message): TileDB FindZlib_EP did not set TILEDB_ZLIB_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) -- Could NOT find AWSSDK -- Adding AWSSDK as an external project -- Could NOT find TBB (missing: TBB_LIBRARIES TBB_INCLUDE_DIR) -- Adding TBB as an external project -- Not found clang-tidy -- Not found clang-format -- Found Doxygen: /usr/bin/doxygen (found version "1.8.13") found components: doxygen dot -- Install prefix is /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/dist -- Configuring done -- Generating done -- Build files have been written to: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build Scanning dependencies of target ep_curl [ 1%] Creating directories for 'ep_curl' [ 3%] Performing download step (download, verify and extract) for 'ep_curl' -- ep_curl download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-download-*.log [ 5%] No patch step for 'ep_curl' [ 7%] No update step for 'ep_curl' [ 8%] Performing configure step for 'ep_curl' -- ep_curl configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-configure-*.log [ 10%] Performing build step for 'ep_curl' -- ep_curl build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-build-*.log [ 12%] Performing install step for 'ep_curl' -- ep_curl install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-install-*.log [ 14%] Completed 'ep_curl' [ 14%] Built target ep_curl Scanning dependencies of target ep_awssdk [ 16%] Creating directories for 'ep_awssdk' [ 17%] Performing download step (download, verify and extract) for 'ep_awssdk' -- ep_awssdk download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-download-*.log [ 19%] No patch step for 'ep_awssdk' [ 21%] No update step for 'ep_awssdk' [ 23%] Performing configure step for 'ep_awssdk' -- ep_awssdk configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-configure-*.log [ 25%] Performing build step for 'ep_awssdk' Command killed due to excessive memory consumption [rtd-command-info] start-time: 2020-03-26T15:37:18.754470Z, end-time: 2020-03-26T15:37:20.190969Z, duration: 1, exit-code: 0 git clone --no-single-branch --depth 50 https://github.com/TileDB-Inc/TileDB-Py.git . Cloning into '.'... [rtd-command-info] start-time: 2020-03-26T15:37:20.664595Z, end-time: 2020-03-26T15:37:20.992700Z, duration: 0, exit-code: 0 git checkout --force de2aff00b97498420199a9d16c8375df70e94780 Note: checking out 'de2aff00b97498420199a9d16c8375df70e94780'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at de2aff0 Add error check for libtiledb build validity in setup.py [rtd-command-info] start-time: 2020-03-26T15:37:21.213603Z, end-time: 2020-03-26T15:37:21.533630Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2020-03-26T15:37:23.107895Z, end-time: 2020-03-26T15:37:28.150120Z, duration: 5, exit-code: 0 python3.7 -mvirtualenv Using base prefix '/home/docs/.pyenv/versions/3.7.3' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2020-03-26T15:37:28.313794Z, end-time: 2020-03-26T15:37:29.311715Z, duration: 0, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip Requirement already up-to-date: pip in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (20.0.2) [rtd-command-info] start-time: 2020-03-26T15:37:29.470688Z, end-time: 2020-03-26T15:37:41.448567Z, duration: 11, exit-code: 0 python -m pip install --upgrade --no-cache-dir Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1 Collecting Pygments==2.3.1 Downloading Pygments-2.3.1-py2.py3-none-any.whl (849 kB) Collecting setuptools==41.0.1 Downloading setuptools-41.0.1-py2.py3-none-any.whl (575 kB) Collecting docutils==0.14 Downloading docutils-0.14-py3-none-any.whl (543 kB) Collecting mock==1.0.1 Downloading mock-1.0.1.tar.gz (818 kB) Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.5-py2.py3-none-any.whl (3.1 MB) Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) Collecting readthedocs-sphinx-ext<1.1 Downloading readthedocs_sphinx_ext-1.0.1-py2.py3-none-any.whl (14 kB) Collecting future Downloading future-0.18.2.tar.gz (829 kB) Collecting packaging Downloading packaging-20.3-py2.py3-none-any.whl (37 kB) Collecting Jinja2>=2.3 Downloading Jinja2-2.11.1-py2.py3-none-any.whl (126 kB) Collecting imagesize Downloading imagesize-1.2.0-py2.py3-none-any.whl (4.8 kB) Collecting six>=1.5 Downloading six-1.14.0-py2.py3-none-any.whl (10 kB) Collecting requests>=2.0.0 Downloading requests-2.23.0-py2.py3-none-any.whl (58 kB) Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.0.0-py2.py3-none-any.whl (97 kB) Collecting babel!=2.0,>=1.3 Downloading Babel-2.8.0-py2.py3-none-any.whl (8.6 MB) Collecting sphinxcontrib-websupport Downloading sphinxcontrib_websupport-1.2.1-py2.py3-none-any.whl (39 kB) Collecting pyparsing>=2.0.2 Downloading pyparsing-2.4.6-py2.py3-none-any.whl (67 kB) Collecting MarkupSafe>=0.23 Downloading MarkupSafe-1.1.1-cp37-cp37m-manylinux1_x86_64.whl (27 kB) Collecting urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 Downloading urllib3-1.25.8-py2.py3-none-any.whl (125 kB) Collecting certifi>=2017.4.17 Downloading certifi-2019.11.28-py2.py3-none-any.whl (156 kB) Collecting chardet<4,>=3.0.2 Downloading chardet-3.0.4-py2.py3-none-any.whl (133 kB) Collecting idna<3,>=2.5 Downloading idna-2.9-py2.py3-none-any.whl (58 kB) Collecting pytz>=2015.7 Downloading pytz-2019.3-py2.py3-none-any.whl (509 kB) Building wheels for collected packages: mock, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23754 sha256=5b22cdbba373f047ab77748963674e424c7fd2d6acc87bbe7e65a4ab83642003 Stored in directory: /tmp/pip-ephem-wheel-cache-xesupr5p/wheels/16/03/37/f0a64ab894c9102906f192db1a4071b7592292ad661563c69b Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491058 sha256=48563eb2bb4ac6b8c751cf068011b0bc6796425d57df817218fe559d2c0a8401 Stored in directory: /tmp/pip-ephem-wheel-cache-xesupr5p/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0 Successfully built mock future Installing collected packages: Pygments, setuptools, docutils, mock, pillow, alabaster, future, commonmark, six, pyparsing, packaging, MarkupSafe, Jinja2, imagesize, urllib3, certifi, chardet, idna, requests, snowballstemmer, pytz, babel, sphinxcontrib-websupport, sphinx, recommonmark, sphinx-rtd-theme, readthedocs-sphinx-ext Attempting uninstall: setuptools Found existing installation: setuptools 46.1.3 Uninstalling setuptools-46.1.3: Successfully uninstalled setuptools-46.1.3 Successfully installed Jinja2-2.11.1 MarkupSafe-1.1.1 Pygments-2.3.1 alabaster-0.7.12 babel-2.8.0 certifi-2019.11.28 chardet-3.0.4 commonmark-0.8.1 docutils-0.14 future-0.18.2 idna-2.9 imagesize-1.2.0 mock-1.0.1 packaging-20.3 pillow-5.4.1 pyparsing-2.4.6 pytz-2019.3 readthedocs-sphinx-ext-1.0.1 recommonmark-0.5.0 requests-2.23.0 setuptools-41.0.1 six-1.14.0 snowballstemmer-2.0.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-websupport-1.2.1 urllib3-1.25.8 [rtd-command-info] start-time: 2020-03-26T15:37:41.632276Z, end-time: 2020-03-26T15:37:55.614946Z, duration: 13, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r requirements.txt Collecting cmake>=3.11.0 Downloading cmake-3.16.3-py3-none-manylinux2010_x86_64.whl (17.0 MB) Collecting cython>=0.29 Downloading Cython-0.29.16-cp37-cp37m-manylinux1_x86_64.whl (2.1 MB) Collecting numpy==1.16.* Downloading numpy-1.16.6-cp37-cp37m-manylinux1_x86_64.whl (17.3 MB) Requirement already satisfied: setuptools>=18.0.1 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 4)) (41.0.1) Collecting setuptools-scm>=1.5.4 Downloading setuptools_scm-3.5.0-py2.py3-none-any.whl (26 kB) Requirement already satisfied: wheel>=0.30 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 6)) (0.34.2) Collecting psutil Downloading psutil-5.7.0.tar.gz (449 kB) Building wheels for collected packages: psutil Building wheel for psutil (setup.py): started Building wheel for psutil (setup.py): finished with status 'done' Created wheel for psutil: filename=psutil-5.7.0-cp37-cp37m-linux_x86_64.whl size=276461 sha256=95a24ae85937c445cc809b630b885e7177401a6643634249136fcb6aa5d543aa Stored in directory: /tmp/pip-ephem-wheel-cache-487wefdk/wheels/b6/e7/50/aee9cc966163d74430f13f208171dee22f11efa4a4a826661c Successfully built psutil Installing collected packages: cmake, cython, numpy, setuptools-scm, psutil Successfully installed cmake-3.16.3 cython-0.29.16 numpy-1.16.6 psutil-5.7.0 setuptools-scm-3.5.0 [rtd-command-info] start-time: 2020-03-26T15:37:55.798571Z, end-time: 2020-03-26T16:37:26.709821Z, duration: 3570, exit-code: 137 python ./setup.py install --force libtiledb_exists checking 'library_dirs': [] libtiledb_exists found: 'None' running install running bdist_egg GNU Make 4.1 Built for x86_64-pc-linux-gnu Copyright (C) 1988-2014 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. -- The C compiler identification is GNU 7.4.0 -- The CXX compiler identification is GNU 7.4.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Starting TileDB superbuild. -- Found Bzip2: /usr/lib/x86_64-linux-gnu/libbz2.so -- Could NOT find LZ4 (missing: LZ4_LIBRARIES LZ4_INCLUDE_DIR) -- Adding LZ4 as an external project -- Could NOT find Spdlog (missing: SPDLOG_INCLUDE_DIR) -- Adding Spdlog as an external project -- Found Zlib: /usr/lib/x86_64-linux-gnu/libz.so -- Could NOT find Zstd (missing: ZSTD_LIBRARIES ZSTD_INCLUDE_DIR) -- Adding Zstd as an external project -- Found OpenSSL: /usr/lib/x86_64-linux-gnu/libssl.so -- OpenSSL crypto: /usr/lib/x86_64-linux-gnu/libcrypto.so -- root: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/install;/usr/local/opt/openssl -- Could NOT find CURL (missing: CURL_LIBRARY CURL_INCLUDE_DIR) -- Could NOT find Curl (missing: CURL_LIBRARIES CURL_INCLUDE_DIR) -- Adding Curl as an external project CMake Warning at cmake/Modules/FindCurl_EP.cmake:106 (message): TileDB FindOpenSSL_EP did not set TILEDB_OPENSSL_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) CMake Warning at cmake/Modules/FindCurl_EP.cmake:118 (message): TileDB FindZlib_EP did not set TILEDB_ZLIB_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) -- Could NOT find AWSSDK -- Adding AWSSDK as an external project -- Could NOT find TBB (missing: TBB_LIBRARIES TBB_INCLUDE_DIR) -- Adding TBB as an external project -- Not found clang-tidy -- Not found clang-format -- Found Doxygen: /usr/bin/doxygen (found version "1.8.13") found components: doxygen dot -- Install prefix is /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/dist -- Configuring done -- Generating done -- Build files have been written to: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build Scanning dependencies of target ep_lz4 [ 1%] Creating directories for 'ep_lz4' [ 3%] Performing download step (download, verify and extract) for 'ep_lz4' -- ep_lz4 download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_lz4-stamp/ep_lz4-download-*.log [ 5%] No patch step for 'ep_lz4' [ 7%] No update step for 'ep_lz4' [ 8%] Performing configure step for 'ep_lz4' -- ep_lz4 configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_lz4-stamp/ep_lz4-configure-*.log [ 10%] Performing build step for 'ep_lz4' -- ep_lz4 build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_lz4-stamp/ep_lz4-build-*.log [ 12%] Performing install step for 'ep_lz4' -- ep_lz4 install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_lz4-stamp/ep_lz4-install-*.log [ 14%] Completed 'ep_lz4' [ 14%] Built target ep_lz4 Scanning dependencies of target ep_zstd [ 16%] Creating directories for 'ep_zstd' [ 17%] Performing download step (download, verify and extract) for 'ep_zstd' -- ep_zstd download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-download-*.log [ 19%] No patch step for 'ep_zstd' [ 21%] No update step for 'ep_zstd' [ 23%] Performing configure step for 'ep_zstd' -- ep_zstd configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-configure-*.log [ 25%] Performing build step for 'ep_zstd' -- ep_zstd build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-build-*.log [ 26%] Performing install step for 'ep_zstd' -- ep_zstd install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-install-*.log [ 28%] Completed 'ep_zstd' [ 28%] Built target ep_zstd Scanning dependencies of target ep_tbb [ 30%] Creating directories for 'ep_tbb' [ 32%] Performing download step (download, verify and extract) for 'ep_tbb' -- ep_tbb download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_tbb-stamp/ep_tbb-download-*.log [ 33%] No patch step for 'ep_tbb' [ 35%] No update step for 'ep_tbb' [ 37%] No configure step for 'ep_tbb' [ 39%] No build step for 'ep_tbb' [ 41%] No install step for 'ep_tbb' [ 42%] Completed 'ep_tbb' [ 42%] Built target ep_tbb Scanning dependencies of target ep_curl [ 44%] Creating directories for 'ep_curl' [ 46%] Performing download step (download, verify and extract) for 'ep_curl' -- ep_curl download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-download-*.log [ 48%] No patch step for 'ep_curl' [ 50%] No update step for 'ep_curl' [ 51%] Performing configure step for 'ep_curl' -- ep_curl configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-configure-*.log [ 53%] Performing build step for 'ep_curl' -- ep_curl build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-build-*.log [ 55%] Performing install step for 'ep_curl' -- ep_curl install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-install-*.log [ 57%] Completed 'ep_curl' [ 57%] Built target ep_curl Scanning dependencies of target ep_awssdk [ 58%] Creating directories for 'ep_awssdk' [ 60%] Performing download step (download, verify and extract) for 'ep_awssdk' -- ep_awssdk download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-download-*.log [ 62%] No patch step for 'ep_awssdk' [ 64%] No update step for 'ep_awssdk' [ 66%] Performing configure step for 'ep_awssdk' -- ep_awssdk configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-configure-*.log [ 67%] Performing build step for 'ep_awssdk' Command killed due to excessive memory consumption [rtd-command-info] start-time: 2020-03-26T16:37:19.253305Z, end-time: 2020-03-26T16:37:20.469589Z, duration: 1, exit-code: 0 git clone --no-single-branch --depth 50 https://github.com/TileDB-Inc/TileDB-Py.git . Cloning into '.'... [rtd-command-info] start-time: 2020-03-26T16:37:21.455930Z, end-time: 2020-03-26T16:37:21.779675Z, duration: 0, exit-code: 0 git checkout --force de2aff00b97498420199a9d16c8375df70e94780 Note: checking out 'de2aff00b97498420199a9d16c8375df70e94780'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at de2aff0 Add error check for libtiledb build validity in setup.py [rtd-command-info] start-time: 2020-03-26T16:37:22.275948Z, end-time: 2020-03-26T16:37:22.595182Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2020-03-26T16:37:24.146275Z, end-time: 2020-03-26T16:37:28.861454Z, duration: 4, exit-code: 0 python3.7 -mvirtualenv Using base prefix '/home/docs/.pyenv/versions/3.7.3' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2020-03-26T16:37:29.048140Z, end-time: 2020-03-26T16:37:30.068520Z, duration: 1, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip Requirement already up-to-date: pip in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (20.0.2) [rtd-command-info] start-time: 2020-03-26T16:37:30.223868Z, end-time: 2020-03-26T16:37:41.618550Z, duration: 11, exit-code: 0 python -m pip install --upgrade --no-cache-dir Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1 Collecting Pygments==2.3.1 Downloading Pygments-2.3.1-py2.py3-none-any.whl (849 kB) Collecting setuptools==41.0.1 Downloading setuptools-41.0.1-py2.py3-none-any.whl (575 kB) Collecting docutils==0.14 Downloading docutils-0.14-py3-none-any.whl (543 kB) Collecting mock==1.0.1 Downloading mock-1.0.1.tar.gz (818 kB) Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.5-py2.py3-none-any.whl (3.1 MB) Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) Collecting readthedocs-sphinx-ext<1.1 Downloading readthedocs_sphinx_ext-1.0.1-py2.py3-none-any.whl (14 kB) Collecting future Downloading future-0.18.2.tar.gz (829 kB) Collecting sphinxcontrib-websupport Downloading sphinxcontrib_websupport-1.2.1-py2.py3-none-any.whl (39 kB) Collecting six>=1.5 Downloading six-1.14.0-py2.py3-none-any.whl (10 kB) Collecting babel!=2.0,>=1.3 Downloading Babel-2.8.0-py2.py3-none-any.whl (8.6 MB) Collecting packaging Downloading packaging-20.3-py2.py3-none-any.whl (37 kB) Collecting imagesize Downloading imagesize-1.2.0-py2.py3-none-any.whl (4.8 kB) Collecting Jinja2>=2.3 Downloading Jinja2-2.11.1-py2.py3-none-any.whl (126 kB) Collecting requests>=2.0.0 Downloading requests-2.23.0-py2.py3-none-any.whl (58 kB) Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.0.0-py2.py3-none-any.whl (97 kB) Collecting pytz>=2015.7 Downloading pytz-2019.3-py2.py3-none-any.whl (509 kB) Collecting pyparsing>=2.0.2 Downloading pyparsing-2.4.6-py2.py3-none-any.whl (67 kB) Collecting MarkupSafe>=0.23 Downloading MarkupSafe-1.1.1-cp37-cp37m-manylinux1_x86_64.whl (27 kB) Collecting certifi>=2017.4.17 Downloading certifi-2019.11.28-py2.py3-none-any.whl (156 kB) Collecting idna<3,>=2.5 Downloading idna-2.9-py2.py3-none-any.whl (58 kB) Collecting chardet<4,>=3.0.2 Downloading chardet-3.0.4-py2.py3-none-any.whl (133 kB) Collecting urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 Downloading urllib3-1.25.8-py2.py3-none-any.whl (125 kB) Building wheels for collected packages: mock, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23754 sha256=85cab4f3fa1a709b7fc303fff4b45c8f0241a2985f9584d1931a8ccd6b6380e5 Stored in directory: /tmp/pip-ephem-wheel-cache-oh9i_9hv/wheels/16/03/37/f0a64ab894c9102906f192db1a4071b7592292ad661563c69b Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491058 sha256=ebe941e4640cf8a3b47757f4d55bc55e23f53b6fc6185f0f9216240c6a484c5d Stored in directory: /tmp/pip-ephem-wheel-cache-oh9i_9hv/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0 Successfully built mock future Installing collected packages: Pygments, setuptools, docutils, mock, pillow, alabaster, future, commonmark, sphinxcontrib-websupport, six, pytz, babel, pyparsing, packaging, imagesize, MarkupSafe, Jinja2, certifi, idna, chardet, urllib3, requests, snowballstemmer, sphinx, recommonmark, sphinx-rtd-theme, readthedocs-sphinx-ext Attempting uninstall: setuptools Found existing installation: setuptools 46.1.3 Uninstalling setuptools-46.1.3: Successfully uninstalled setuptools-46.1.3 Successfully installed Jinja2-2.11.1 MarkupSafe-1.1.1 Pygments-2.3.1 alabaster-0.7.12 babel-2.8.0 certifi-2019.11.28 chardet-3.0.4 commonmark-0.8.1 docutils-0.14 future-0.18.2 idna-2.9 imagesize-1.2.0 mock-1.0.1 packaging-20.3 pillow-5.4.1 pyparsing-2.4.6 pytz-2019.3 readthedocs-sphinx-ext-1.0.1 recommonmark-0.5.0 requests-2.23.0 setuptools-41.0.1 six-1.14.0 snowballstemmer-2.0.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-websupport-1.2.1 urllib3-1.25.8 [rtd-command-info] start-time: 2020-03-26T16:37:42.131895Z, end-time: 2020-03-26T16:37:53.400116Z, duration: 11, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r requirements.txt Collecting cmake>=3.11.0 Downloading cmake-3.16.3-py3-none-manylinux2010_x86_64.whl (17.0 MB) Collecting cython>=0.29 Downloading Cython-0.29.16-cp37-cp37m-manylinux1_x86_64.whl (2.1 MB) Collecting numpy==1.16.* Downloading numpy-1.16.6-cp37-cp37m-manylinux1_x86_64.whl (17.3 MB) Requirement already satisfied: setuptools>=18.0.1 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 4)) (41.0.1) Collecting setuptools-scm>=1.5.4 Downloading setuptools_scm-3.5.0-py2.py3-none-any.whl (26 kB) Requirement already satisfied: wheel>=0.30 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 6)) (0.34.2) Collecting psutil Downloading psutil-5.7.0.tar.gz (449 kB) Building wheels for collected packages: psutil Building wheel for psutil (setup.py): started Building wheel for psutil (setup.py): finished with status 'done' Created wheel for psutil: filename=psutil-5.7.0-cp37-cp37m-linux_x86_64.whl size=276452 sha256=b5e3f0f1bca74f9edcfca6ae65111193e8b247744789d88c2e021fe1c19a7c04 Stored in directory: /tmp/pip-ephem-wheel-cache-vlvhps5k/wheels/b6/e7/50/aee9cc966163d74430f13f208171dee22f11efa4a4a826661c Successfully built psutil Installing collected packages: cmake, cython, numpy, setuptools-scm, psutil Successfully installed cmake-3.16.3 cython-0.29.16 numpy-1.16.6 psutil-5.7.0 setuptools-scm-3.5.0 [rtd-command-info] start-time: 2020-03-26T17:13:05.359838Z, end-time: 2020-03-26T17:13:14.576476Z, duration: 9, exit-code: 0 git clone --no-single-branch --depth 50 https://github.com/TileDB-Inc/TileDB-Py.git . Cloning into '.'... [rtd-command-info] start-time: 2020-03-26T17:13:15.076275Z, end-time: 2020-03-26T17:13:15.393055Z, duration: 0, exit-code: 0 git checkout --force de2aff00b97498420199a9d16c8375df70e94780 Note: checking out 'de2aff00b97498420199a9d16c8375df70e94780'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at de2aff0 Add error check for libtiledb build validity in setup.py [rtd-command-info] start-time: 2020-03-26T17:13:15.553116Z, end-time: 2020-03-26T17:13:15.828246Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2020-03-26T17:13:18.400891Z, end-time: 2020-03-26T17:13:47.223532Z, duration: 28, exit-code: 0 python3.7 -mvirtualenv Using base prefix '/home/docs/.pyenv/versions/3.7.3' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2020-03-26T17:13:47.386402Z, end-time: 2020-03-26T17:13:48.384237Z, duration: 0, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip Requirement already up-to-date: pip in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (20.0.2) [rtd-command-info] start-time: 2020-03-26T17:13:48.542022Z, end-time: 2020-03-26T17:14:02.311556Z, duration: 13, exit-code: 0 python -m pip install --upgrade --no-cache-dir Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1 Collecting Pygments==2.3.1 Downloading Pygments-2.3.1-py2.py3-none-any.whl (849 kB) Collecting setuptools==41.0.1 Downloading setuptools-41.0.1-py2.py3-none-any.whl (575 kB) Collecting docutils==0.14 Downloading docutils-0.14-py3-none-any.whl (543 kB) Collecting mock==1.0.1 Downloading mock-1.0.1.tar.gz (818 kB) Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.5-py2.py3-none-any.whl (3.1 MB) Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) Collecting readthedocs-sphinx-ext<1.1 Downloading readthedocs_sphinx_ext-1.0.1-py2.py3-none-any.whl (14 kB) Collecting future Downloading future-0.18.2.tar.gz (829 kB) Collecting babel!=2.0,>=1.3 Downloading Babel-2.8.0-py2.py3-none-any.whl (8.6 MB) Collecting imagesize Downloading imagesize-1.2.0-py2.py3-none-any.whl (4.8 kB) Collecting six>=1.5 Downloading six-1.14.0-py2.py3-none-any.whl (10 kB) Collecting sphinxcontrib-websupport Downloading sphinxcontrib_websupport-1.2.1-py2.py3-none-any.whl (39 kB) Collecting packaging Downloading packaging-20.3-py2.py3-none-any.whl (37 kB) Collecting requests>=2.0.0 Downloading requests-2.23.0-py2.py3-none-any.whl (58 kB) Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.0.0-py2.py3-none-any.whl (97 kB) Collecting Jinja2>=2.3 Downloading Jinja2-2.11.1-py2.py3-none-any.whl (126 kB) Collecting pytz>=2015.7 Downloading pytz-2019.3-py2.py3-none-any.whl (509 kB) Collecting pyparsing>=2.0.2 Downloading pyparsing-2.4.6-py2.py3-none-any.whl (67 kB) Collecting chardet<4,>=3.0.2 Downloading chardet-3.0.4-py2.py3-none-any.whl (133 kB) Collecting certifi>=2017.4.17 Downloading certifi-2019.11.28-py2.py3-none-any.whl (156 kB) Collecting idna<3,>=2.5 Downloading idna-2.9-py2.py3-none-any.whl (58 kB) Collecting urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 Downloading urllib3-1.25.8-py2.py3-none-any.whl (125 kB) Collecting MarkupSafe>=0.23 Downloading MarkupSafe-1.1.1-cp37-cp37m-manylinux1_x86_64.whl (27 kB) Building wheels for collected packages: mock, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23754 sha256=8a92bca752b52400bc7ed9184b944c29065d09ebaec18b4a64bb6e9a35f71f6a Stored in directory: /tmp/pip-ephem-wheel-cache-b3lfok81/wheels/16/03/37/f0a64ab894c9102906f192db1a4071b7592292ad661563c69b Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491058 sha256=900e8ee73b93144170463435bb7813b1eebfdd8d8ad2c5775a63be2a85d2ea62 Stored in directory: /tmp/pip-ephem-wheel-cache-b3lfok81/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0 Successfully built mock future Installing collected packages: Pygments, setuptools, docutils, mock, pillow, alabaster, future, commonmark, pytz, babel, imagesize, six, sphinxcontrib-websupport, pyparsing, packaging, chardet, certifi, idna, urllib3, requests, snowballstemmer, MarkupSafe, Jinja2, sphinx, recommonmark, sphinx-rtd-theme, readthedocs-sphinx-ext Attempting uninstall: setuptools Found existing installation: setuptools 46.1.3 Uninstalling setuptools-46.1.3: Successfully uninstalled setuptools-46.1.3 Successfully installed Jinja2-2.11.1 MarkupSafe-1.1.1 Pygments-2.3.1 alabaster-0.7.12 babel-2.8.0 certifi-2019.11.28 chardet-3.0.4 commonmark-0.8.1 docutils-0.14 future-0.18.2 idna-2.9 imagesize-1.2.0 mock-1.0.1 packaging-20.3 pillow-5.4.1 pyparsing-2.4.6 pytz-2019.3 readthedocs-sphinx-ext-1.0.1 recommonmark-0.5.0 requests-2.23.0 setuptools-41.0.1 six-1.14.0 snowballstemmer-2.0.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-websupport-1.2.1 urllib3-1.25.8 [rtd-command-info] start-time: 2020-03-26T17:14:02.533591Z, end-time: 2020-03-26T17:14:27.080423Z, duration: 24, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r requirements.txt Collecting cmake>=3.11.0 Downloading cmake-3.16.3-py3-none-manylinux2010_x86_64.whl (17.0 MB) Collecting cython>=0.29 Downloading Cython-0.29.16-cp37-cp37m-manylinux1_x86_64.whl (2.1 MB) Collecting numpy==1.16.* Downloading numpy-1.16.6-cp37-cp37m-manylinux1_x86_64.whl (17.3 MB) Requirement already satisfied: setuptools>=18.0.1 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 4)) (41.0.1) Collecting setuptools-scm>=1.5.4 Downloading setuptools_scm-3.5.0-py2.py3-none-any.whl (26 kB) Requirement already satisfied: wheel>=0.30 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 6)) (0.34.2) Collecting psutil Downloading psutil-5.7.0.tar.gz (449 kB) Building wheels for collected packages: psutil Building wheel for psutil (setup.py): started Building wheel for psutil (setup.py): finished with status 'done' Created wheel for psutil: filename=psutil-5.7.0-cp37-cp37m-linux_x86_64.whl size=276465 sha256=2739e74da2a4911690d1200fabad4c565ad80f314821c44461a78f0b2140f4b5 Stored in directory: /tmp/pip-ephem-wheel-cache-nmq0h6x5/wheels/b6/e7/50/aee9cc966163d74430f13f208171dee22f11efa4a4a826661c Successfully built psutil Installing collected packages: cmake, cython, numpy, setuptools-scm, psutil Successfully installed cmake-3.16.3 cython-0.29.16 numpy-1.16.6 psutil-5.7.0 setuptools-scm-3.5.0 [rtd-command-info] start-time: 2020-03-26T17:14:27.250066Z, end-time: 2020-03-26T17:22:59.376821Z, duration: 512, exit-code: 0 python ./setup.py install --force libtiledb_exists checking 'library_dirs': [] libtiledb_exists found: 'None' running install running bdist_egg GNU Make 4.1 Built for x86_64-pc-linux-gnu Copyright (C) 1988-2014 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. -- The C compiler identification is GNU 7.4.0 -- The CXX compiler identification is GNU 7.4.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Starting TileDB superbuild. -- Found Bzip2: /usr/lib/x86_64-linux-gnu/libbz2.so -- Could NOT find LZ4 (missing: LZ4_LIBRARIES LZ4_INCLUDE_DIR) -- Adding LZ4 as an external project -- Could NOT find Spdlog (missing: SPDLOG_INCLUDE_DIR) -- Adding Spdlog as an external project -- Found Zlib: /usr/lib/x86_64-linux-gnu/libz.so -- Could NOT find Zstd (missing: ZSTD_LIBRARIES ZSTD_INCLUDE_DIR) -- Adding Zstd as an external project -- Found OpenSSL: /usr/lib/x86_64-linux-gnu/libssl.so -- OpenSSL crypto: /usr/lib/x86_64-linux-gnu/libcrypto.so -- root: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/install;/usr/local/opt/openssl -- Could NOT find CURL (missing: CURL_LIBRARY CURL_INCLUDE_DIR) -- Could NOT find Curl (missing: CURL_LIBRARIES CURL_INCLUDE_DIR) CMake Warning at cmake/Modules/FindCurl_EP.cmake:106 (message): TileDB FindOpenSSL_EP did not set TILEDB_OPENSSL_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) -- Adding Curl as an external project CMake Warning at cmake/Modules/FindCurl_EP.cmake:118 (message): TileDB FindZlib_EP did not set TILEDB_ZLIB_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) -- Could NOT find AWSSDK -- Adding AWSSDK as an external project -- Could NOT find TBB (missing: TBB_LIBRARIES TBB_INCLUDE_DIR) -- Adding TBB as an external project -- Not found clang-tidy -- Not found clang-format -- Found Doxygen: /usr/bin/doxygen (found version "1.8.13") found components: doxygen dot -- Install prefix is /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/dist -- Configuring done -- Generating done -- Build files have been written to: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build Scanning dependencies of target ep_spdlog Scanning dependencies of target ep_curl [ 1%] Creating directories for 'ep_curl' [ 3%] Creating directories for 'ep_spdlog' [ 5%] Performing download step (download, verify and extract) for 'ep_curl' [ 7%] Performing download step (download, verify and extract) for 'ep_spdlog' -- ep_curl download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-download-*.log [ 8%] No patch step for 'ep_curl' [ 10%] No update step for 'ep_curl' [ 12%] Performing configure step for 'ep_curl' -- ep_spdlog download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_spdlog-stamp/ep_spdlog-download-*.log [ 14%] No patch step for 'ep_spdlog' [ 16%] No update step for 'ep_spdlog' [ 17%] No configure step for 'ep_spdlog' [ 19%] No build step for 'ep_spdlog' [ 21%] No install step for 'ep_spdlog' [ 23%] Completed 'ep_spdlog' [ 23%] Built target ep_spdlog Scanning dependencies of target ep_lz4 [ 25%] Creating directories for 'ep_lz4' [ 26%] Performing download step (download, verify and extract) for 'ep_lz4' -- ep_lz4 download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_lz4-stamp/ep_lz4-download-*.log [ 28%] No patch step for 'ep_lz4' [ 30%] No update step for 'ep_lz4' [ 32%] Performing configure step for 'ep_lz4' -- ep_lz4 configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_lz4-stamp/ep_lz4-configure-*.log [ 33%] Performing build step for 'ep_lz4' -- ep_lz4 build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_lz4-stamp/ep_lz4-build-*.log [ 35%] Performing install step for 'ep_lz4' -- ep_lz4 install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_lz4-stamp/ep_lz4-install-*.log [ 37%] Completed 'ep_lz4' [ 37%] Built target ep_lz4 Scanning dependencies of target ep_zstd [ 39%] Creating directories for 'ep_zstd' [ 41%] Performing download step (download, verify and extract) for 'ep_zstd' -- ep_zstd download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-download-*.log [ 42%] No patch step for 'ep_zstd' [ 44%] No update step for 'ep_zstd' [ 46%] Performing configure step for 'ep_zstd' -- ep_zstd configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-configure-*.log [ 48%] Performing build step for 'ep_zstd' -- ep_curl configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-configure-*.log [ 50%] Performing build step for 'ep_curl' -- ep_zstd build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-build-*.log [ 51%] Performing install step for 'ep_zstd' -- ep_zstd install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-install-*.log [ 53%] Completed 'ep_zstd' [ 53%] Built target ep_zstd Scanning dependencies of target ep_tbb [ 55%] Creating directories for 'ep_tbb' [ 57%] Performing download step (download, verify and extract) for 'ep_tbb' -- ep_tbb download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_tbb-stamp/ep_tbb-download-*.log [ 58%] No patch step for 'ep_tbb' [ 60%] No update step for 'ep_tbb' [ 62%] No configure step for 'ep_tbb' [ 64%] No build step for 'ep_tbb' [ 66%] No install step for 'ep_tbb' [ 67%] Completed 'ep_tbb' [ 67%] Built target ep_tbb -- ep_curl build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-build-*.log [ 69%] Performing install step for 'ep_curl' -- ep_curl install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-install-*.log [ 71%] Completed 'ep_curl' [ 71%] Built target ep_curl Scanning dependencies of target ep_awssdk [ 73%] Creating directories for 'ep_awssdk' [ 75%] Performing download step (download, verify and extract) for 'ep_awssdk' -- ep_awssdk download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-download-*.log [ 78%] No update step for 'ep_awssdk' [ 78%] No patch step for 'ep_awssdk' [ 80%] Performing configure step for 'ep_awssdk' -- ep_awssdk configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-configure-*.log [ 82%] Performing build step for 'ep_awssdk' -- ep_awssdk build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-build-*.log [ 83%] Performing install step for 'ep_awssdk' -- ep_awssdk install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-install-*.log [ 85%] Completed 'ep_awssdk' [ 85%] Built target ep_awssdk Scanning dependencies of target tiledb [ 87%] Creating directories for 'tiledb' [ 89%] No download step for 'tiledb' [ 91%] No patch step for 'tiledb' [ 92%] No update step for 'tiledb' [ 94%] Performing configure step for 'tiledb' -- The C compiler identification is GNU 7.4.0 -- The CXX compiler identification is GNU 7.4.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Starting TileDB regular build. -- TileDB C++ API is not built. -- The TileDB library is compiled with stats enabled. -- Found OpenSSL: /usr/lib/x86_64-linux-gnu/libssl.so -- OpenSSL crypto: /usr/lib/x86_64-linux-gnu/libcrypto.so -- root: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/install;/usr/local/opt/openssl -- The TileDB library is compiled with S3 support. -- Found AWS SDK for C++, Version: 1.7.108, Install Root:/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/install, Platform Prefix:, Platform Dependent Libraries: pthread;crypto;ssl;z;curl -- Found AWS lib: aws-cpp-sdk-s3 (/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/install/lib/libaws-cpp-sdk-s3.a) -- Found AWS lib: aws-cpp-sdk-core (/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/install/lib/libaws-cpp-sdk-core.a) -- Found AWS lib: aws-c-common (/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/install/lib/libaws-c-common.a) -- Found AWS lib: aws-c-event-stream (/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/install/lib/libaws-c-event-stream.a) -- Found AWS lib: aws-checksums (/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/install/lib/libaws-checksums.a) -- Found CURL: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/install/lib/libcurl.a (found version "7.65.3") -- Found CURL: '/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/install/lib/libcurl.a' (found version "") -- The TileDB library is compiled with HDFS support. -- Building Intel TBB: /usr/bin/make -j2 compiler=gcc tbb_build_dir=/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_tbb-build tbb_build_prefix= extra_inc=big_iron.inc -- Found TBB: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_tbb-build/_release/libtbb.a -- Found TBB imported target: TBB::tbb -- Found Bzip2: /usr/lib/x86_64-linux-gnu/libbz2.so -- Found LZ4: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/install/lib/liblz4.a -- Found Spdlog: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_spdlog/include -- Found Zlib: /usr/lib/x86_64-linux-gnu/libz.so -- Found Zstd: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/install/lib/libzstd.a -- Found curl-config: '/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/install/bin/curl-config' -- Adding transitive Curl library links to TileDB targets: '/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/install/lib/libcurl.a;-lssl;-lcrypto;-lssl;-lcrypto;-lz' -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- Configuring done -- Generating done -- Build files have been written to: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/tiledb [ 96%] Performing build step for 'tiledb' Scanning dependencies of target TILEDB_CORE_OBJECTS [ 1%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/array/array.cc.o [ 1%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/array_schema/array_schema.cc.o [ 3%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/array_schema/attribute.cc.o [ 3%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/array_schema/dimension.cc.o [ 4%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/array_schema/domain.cc.o [ 6%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/buffer/buffer.cc.o [ 7%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/buffer/buffer_list.cc.o [ 7%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/buffer/const_buffer.cc.o [ 9%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/buffer/preallocated_buffer.cc.o [ 10%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/c_api/tiledb.cc.o [ 10%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/cache/lru_cache.cc.o [ 12%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/compressors/bzip_compressor.cc.o [ 14%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/compressors/dd_compressor.cc.o [ 15%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/compressors/gzip_compressor.cc.o [ 15%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/compressors/lz4_compressor.cc.o [ 17%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/compressors/rle_compressor.cc.o [ 18%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/compressors/zstd_compressor.cc.o [ 18%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/config/config.cc.o [ 20%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/config/config_iter.cc.o [ 21%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/encryption/encryption.cc.o [ 23%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/encryption/encryption_key.cc.o [ 23%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/encryption/encryption_key_validation.cc.o [ 25%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/encryption/encryption_openssl.cc.o [ 26%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/encryption/encryption_win32.cc.o [ 26%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filesystem/hdfs_filesystem.cc.o [ 28%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filesystem/posix.cc.o [ 29%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filesystem/s3.cc.o [ 31%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filesystem/s3_thread_pool_executor.cc.o [ 31%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filesystem/vfs.cc.o [ 32%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filesystem/vfs_file_handle.cc.o [ 34%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filesystem/win.cc.o [ 35%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filter/bit_width_reduction_filter.cc.o [ 35%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filter/bitshuffle_filter.cc.o [ 37%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filter/byteshuffle_filter.cc.o [ 39%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filter/checksum_md5_filter.cc.o [ 39%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filter/checksum_sha256_filter.cc.o [ 40%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filter/compression_filter.cc.o [ 42%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filter/encryption_aes256gcm_filter.cc.o [ 43%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filter/filter.cc.o [ 43%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filter/filter_buffer.cc.o [ 45%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filter/filter_pipeline.cc.o [ 46%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filter/filter_storage.cc.o [ 46%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filter/noop_filter.cc.o [ 48%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filter/positive_delta_filter.cc.o [ 50%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/fragment/fragment_metadata.cc.o [ 51%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/global_state/global_state.cc.o [ 51%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/global_state/libcurl_state.cc.o [ 53%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/global_state/openssl_state.cc.o [ 54%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/global_state/signal_handlers.cc.o [ 54%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/global_state/tbb_state.cc.o [ 56%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/global_state/watchdog.cc.o [ 57%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/metadata/metadata.cc.o [ 59%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/misc/cancelable_tasks.cc.o [ 59%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/misc/constants.cc.o [ 60%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/misc/logger.cc.o [ 62%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/misc/stats.cc.o [ 64%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/misc/status.cc.o [ 64%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/misc/thread_pool.cc.o [ 65%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/misc/uri.cc.o [ 67%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/misc/utils.cc.o [ 67%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/misc/uuid.cc.o [ 68%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/misc/win_constants.cc.o [ 70%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/misc/work_arounds.cc.o [ 71%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/query/query.cc.o [ 71%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/query/reader.cc.o [ 73%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/query/result_cell_slab_iter.cc.o [ 75%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/query/writer.cc.o [ 75%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/query/dense_cell_range_iter.cc.o [ 76%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/rest/rest_client.cc.o [ 78%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/rtree/rtree.cc.o [ 79%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/serialization/array_schema.cc.o [ 79%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/serialization/query.cc.o [ 81%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/storage_manager/context.cc.o [ 82%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/storage_manager/consolidator.cc.o [ 82%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/storage_manager/open_array.cc.o [ 84%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/storage_manager/storage_manager.cc.o [ 85%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/subarray/cell_slab_iter.cc.o [ 87%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/subarray/subarray.cc.o [ 87%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/subarray/subarray_partitioner.cc.o [ 89%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/tile/tile.cc.o [ 90%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/tile/tile_io.cc.o [ 90%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/__/external/src/md5/md5.cc.o [ 92%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/__/external/src/bitshuffle/iochain.cc.o [ 93%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/__/external/src/bitshuffle/bitshuffle_core.cc.o [ 95%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/__/external/src/blosc/shuffle.cc.o [ 95%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/__/external/src/blosc/shuffle-avx2.cc.o [ 96%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/__/external/src/blosc/shuffle-generic.cc.o [ 98%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/__/external/src/blosc/shuffle-sse2.cc.o [ 98%] Built target TILEDB_CORE_OBJECTS Scanning dependencies of target tiledb_shared [100%] Linking CXX shared library libtiledb.so [100%] Built target tiledb_shared [ 98%] No install step for 'tiledb' [100%] Completed 'tiledb' [100%] Built target tiledb Scanning dependencies of target install-tiledb [ 98%] Built target TILEDB_CORE_OBJECTS [100%] Built target tiledb_shared Install the project... -- Install configuration: "Release" -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/dist/lib/libtiledb.so.1.7 -- Set runtime path of "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/dist/lib/libtiledb.so.1.7" to "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/dist/lib" -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/dist/lib/libtiledb.so -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/dist/include/tiledb/tiledb.h -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/dist/include/tiledb/tiledb_enum.h -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/dist/include/tiledb/tiledb_version.h -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/dist/include/tiledb/tiledb_export.h -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/dist/lib/cmake/TileDB/TileDBConfig.cmake -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/dist/lib/cmake/TileDB/TileDBTargets.cmake -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/dist/lib/cmake/TileDB/TileDBTargets-release.cmake Built target install-tiledb libtiledb_exists checking 'library_dirs': [] libtiledb_exists found: 'None' Downloading TileDB package from 1.7.6... Building libtiledb in directory /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build... CMake configure command: ['cmake', '-DCMAKE_INSTALL_PREFIX=/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/dist', '-DTILEDB_TESTS=OFF', '-DTILEDB_S3=ON', '-DTILEDB_HDFS=ON', '-DTILEDB_INSTALL_LIBDIR=lib', '-DTILEDB_CPP_API=OFF', '-DTILEDB_LOG_OUTPUT_ON_FAILURE=ON', '-DTILEDB_FORCE_ALL_DEPS:BOOL=OFF', '-DTILEDB_SERIALIZATION:BOOL=OFF', '-DCMAKE_BUILD_TYPE=Release', '/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6'] Copying file /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/dist/lib/libtiledb.so to /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/tiledb/native/libtiledb.so ------------------- libtiledb_objects: ['native/libtiledb.so*'] ------------------- running egg_info creating tiledb.egg-info writing tiledb.egg-info/PKG-INFO writing dependency_links to tiledb.egg-info/dependency_links.txt writing requirements to tiledb.egg-info/requires.txt writing top-level names to tiledb.egg-info/top_level.txt writing manifest file 'tiledb.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'tiledb.egg-info/SOURCES.txt' installing library code to build/bdist.linux-x86_64/egg running install_lib running build_py creating build/lib.linux-x86_64-3.7 creating build/lib.linux-x86_64-3.7/tiledb copying tiledb/highlevel.py -> build/lib.linux-x86_64-3.7/tiledb copying tiledb/__init__.py -> build/lib.linux-x86_64-3.7/tiledb copying tiledb/version.py -> build/lib.linux-x86_64-3.7/tiledb copying tiledb/array.py -> build/lib.linux-x86_64-3.7/tiledb copying tiledb/metadata.py -> build/lib.linux-x86_64-3.7/tiledb copying tiledb/multirange_indexing.py -> build/lib.linux-x86_64-3.7/tiledb creating build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/test_metadata.py -> build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/test_pandas_dataframe.py -> build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/test_dask.py -> build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/test_domain_index.py -> build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/__init__.py -> build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/all.py -> build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/test_multi_index.py -> build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/test_libtiledb.py -> build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/test_util.py -> build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/test_examples.py -> build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/common.py -> build/lib.linux-x86_64-3.7/tiledb/tests creating build/lib.linux-x86_64-3.7/tiledb/native copying tiledb/native/libtiledb.so -> build/lib.linux-x86_64-3.7/tiledb/native running build_ext libtiledb_exists checking 'library_dirs': ['/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/dist/lib'] libtiledb_exists found: '/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/dist/lib/libtiledb.so' cythoning tiledb/libtiledb.pyx to tiledb/libtiledb.cpp building 'tiledb.libtiledb' extension creating build/temp.linux-x86_64-3.7 creating build/temp.linux-x86_64-3.7/tiledb gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/dist/include -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/numpy/core/include -I/home/docs/.pyenv/versions/3.7.3/include/python3.7m -c tiledb/libtiledb.cpp -o build/temp.linux-x86_64-3.7/tiledb/libtiledb.o -std=c++11 -Wno-deprecated-declarations In file included from /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822:0, from /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from tiledb/libtiledb.cpp:623: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ tiledb/indexing.pyx: In function ‘PyObject* __pyx_f_6tiledb_9libtiledb_execute_multi_index(__pyx_obj_6tiledb_9libtiledb_Array*, tiledb_query_t*, PyObject*, PyObject*)’: tiledb/indexing.pyx:177:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for attr_idx in range(nattr): ~~~~~~~~~~~^ tiledb/indexing.pyx:230:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for attr_idx in range(nattr): ~~~~~~~~~~~^ tiledb/indexing.pyx:255:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for attr_idx in range(nattr): ~~~~~~~~~~ ^ tiledb/indexing.pyx: In function ‘PyObject* __pyx_f_6tiledb_9libtiledb_multi_index(__pyx_obj_6tiledb_9libtiledb_Array*, PyObject*, PyObject*, int, __pyx_opt_args_6tiledb_9libtiledb_multi_index*)’: tiledb/indexing.pyx:314:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for dim_idx in range(len(ranges)): ~~~~~~~~~~~^~~~ tiledb/indexing.pyx:322:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for range_idx in range(len(dim_ranges)): ~~~~~~~~~~~^~~~~~~~~~~~ tiledb/libtiledb.pyx: In function ‘PyObject* __pyx_f_6tiledb_9libtiledb_5Array__unpack_varlen_query(__pyx_obj_6tiledb_9libtiledb_Array*, __pyx_obj_6tiledb_9libtiledb_ReadQuery*, PyObject*)’: tiledb/libtiledb.pyx:3518:46: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] if ((el_ptr[0]) == NULL and el_bytelen == 1): ^ tiledb/libtiledb.pyx: In function ‘int __pyx_pf_6tiledb_9libtiledb_9ReadQuery___init__(__pyx_obj_6tiledb_9libtiledb_ReadQuery*, __pyx_obj_6tiledb_9libtiledb_Array*, PyArrayObject*, PyObject*, tiledb_layout_t)’: tiledb/libtiledb.pyx:3616:41: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for i in range(nattr): ~~~~~ ^ tiledb/libtiledb.pyx:3669:43: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for i in range(nattr): ~~~~~~~ ^ tiledb/libtiledb.pyx:3704:43: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for update_res_bytes_idx in range(nattr): ~~~~~~~~~~~^~~~~~~~~~~~ tiledb/libtiledb.pyx:3729:41: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for i in range(nattr): ~~~~~ ^ tiledb/libmetadata.pyx: At global scope: tiledb/libmetadata.pyx:275:18: warning: ‘PyObject* __pyx_f_6tiledb_9libtiledb_put_metadata_dict(__pyx_obj_6tiledb_9libtiledb_Array*, PyObject*)’ defined but not used [-Wunused-function] cdef put_metadata_dict(Array array, kv): ^~~~~~~~~~~~~~~~~~~~~~~ tiledb/libmetadata.pyx:20:18: warning: ‘PyObject* __pyx_f_6tiledb_9libtiledb_metadata_value_check(PyObject*)’ defined but not used [-Wunused-function] cdef object metadata_value_check(val): ^~~~~~~~~~~~~~~~~~~~~ tiledb/np2buf.pyx:22:18: warning: ‘PyObject* __pyx_f_6tiledb_9libtiledb__varlen_type_compat(PyObject*, PyObject*)’ defined but not used [-Wunused-function] cdef _varlen_type_compat(object reftype, object val): ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tiledb/libmetadata.pyx: In function ‘PyObject* __pyx_pf_6tiledb_9libtiledb_16put_metadata(PyObject*, __pyx_obj_6tiledb_9libtiledb_Array*, PyObject*, PyObject*)’: tiledb/libmetadata.pyx:222:14: warning: ‘__pyx_v_data_ptr’ may be used uninitialized in this function [-Wmaybe-uninitialized] rc = tiledb_array_put_metadata( ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ tiledb/libmetadata.pyx:187:15: note: ‘__pyx_v_data_ptr’ was declared here key, value): ^ ~~~~~~~~~~~~ g++ -pthread -shared -L/home/docs/.pyenv/versions/3.7.3/lib -L/home/docs/.pyenv/versions/3.7.3/lib build/temp.linux-x86_64-3.7/tiledb/libtiledb.o -L/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/dist/lib -ltiledb -o build/lib.linux-x86_64-3.7/tiledb/libtiledb.cpython-37m-x86_64-linux-gnu.so creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/egg creating build/bdist.linux-x86_64/egg/tiledb creating build/bdist.linux-x86_64/egg/tiledb/tests copying build/lib.linux-x86_64-3.7/tiledb/tests/test_metadata.py -> build/bdist.linux-x86_64/egg/tiledb/tests copying build/lib.linux-x86_64-3.7/tiledb/tests/test_pandas_dataframe.py -> build/bdist.linux-x86_64/egg/tiledb/tests copying build/lib.linux-x86_64-3.7/tiledb/tests/test_dask.py -> build/bdist.linux-x86_64/egg/tiledb/tests copying build/lib.linux-x86_64-3.7/tiledb/tests/test_domain_index.py -> build/bdist.linux-x86_64/egg/tiledb/tests copying build/lib.linux-x86_64-3.7/tiledb/tests/__init__.py -> build/bdist.linux-x86_64/egg/tiledb/tests copying build/lib.linux-x86_64-3.7/tiledb/tests/all.py -> build/bdist.linux-x86_64/egg/tiledb/tests copying build/lib.linux-x86_64-3.7/tiledb/tests/test_multi_index.py -> build/bdist.linux-x86_64/egg/tiledb/tests copying build/lib.linux-x86_64-3.7/tiledb/tests/test_libtiledb.py -> build/bdist.linux-x86_64/egg/tiledb/tests copying build/lib.linux-x86_64-3.7/tiledb/tests/test_util.py -> build/bdist.linux-x86_64/egg/tiledb/tests copying build/lib.linux-x86_64-3.7/tiledb/tests/test_examples.py -> build/bdist.linux-x86_64/egg/tiledb/tests copying build/lib.linux-x86_64-3.7/tiledb/tests/common.py -> build/bdist.linux-x86_64/egg/tiledb/tests copying build/lib.linux-x86_64-3.7/tiledb/highlevel.py -> build/bdist.linux-x86_64/egg/tiledb copying build/lib.linux-x86_64-3.7/tiledb/__init__.py -> build/bdist.linux-x86_64/egg/tiledb copying build/lib.linux-x86_64-3.7/tiledb/libtiledb.cpython-37m-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/egg/tiledb copying build/lib.linux-x86_64-3.7/tiledb/version.py -> build/bdist.linux-x86_64/egg/tiledb copying build/lib.linux-x86_64-3.7/tiledb/array.py -> build/bdist.linux-x86_64/egg/tiledb creating build/bdist.linux-x86_64/egg/tiledb/native copying build/lib.linux-x86_64-3.7/tiledb/native/libtiledb.so -> build/bdist.linux-x86_64/egg/tiledb/native copying build/lib.linux-x86_64-3.7/tiledb/metadata.py -> build/bdist.linux-x86_64/egg/tiledb copying build/lib.linux-x86_64-3.7/tiledb/multirange_indexing.py -> build/bdist.linux-x86_64/egg/tiledb byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/test_metadata.py to test_metadata.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/test_pandas_dataframe.py to test_pandas_dataframe.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/test_dask.py to test_dask.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/test_domain_index.py to test_domain_index.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/all.py to all.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/test_multi_index.py to test_multi_index.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/test_libtiledb.py to test_libtiledb.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/test_util.py to test_util.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/test_examples.py to test_examples.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/common.py to common.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/highlevel.py to highlevel.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/version.py to version.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/array.py to array.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/metadata.py to metadata.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/multirange_indexing.py to multirange_indexing.cpython-37.pyc creating stub loader for tiledb/libtiledb.cpython-37m-x86_64-linux-gnu.so byte-compiling build/bdist.linux-x86_64/egg/tiledb/libtiledb.py to libtiledb.cpython-37.pyc creating build/bdist.linux-x86_64/egg/EGG-INFO copying tiledb.egg-info/PKG-INFO -> build/bdist.linux-x86_64/egg/EGG-INFO copying tiledb.egg-info/SOURCES.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying tiledb.egg-info/dependency_links.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying tiledb.egg-info/not-zip-safe -> build/bdist.linux-x86_64/egg/EGG-INFO copying tiledb.egg-info/requires.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying tiledb.egg-info/top_level.txt -> build/bdist.linux-x86_64/egg/EGG-INFO writing build/bdist.linux-x86_64/egg/EGG-INFO/native_libs.txt creating dist creating 'dist/tiledb-0.5.8-py3.7-linux-x86_64.egg' and adding 'build/bdist.linux-x86_64/egg' to it removing 'build/bdist.linux-x86_64/egg' (and everything under it) Processing tiledb-0.5.8-py3.7-linux-x86_64.egg creating /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/tiledb-0.5.8-py3.7-linux-x86_64.egg Extracting tiledb-0.5.8-py3.7-linux-x86_64.egg to /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages Adding tiledb 0.5.8 to easy-install.pth file Installed /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/tiledb-0.5.8-py3.7-linux-x86_64.egg Processing dependencies for tiledb==0.5.8 Searching for wheel==0.34.2 Best match: wheel 0.34.2 Adding wheel 0.34.2 to easy-install.pth file Installing wheel script to /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin Using /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages Searching for numpy==1.16.6 Best match: numpy 1.16.6 Adding numpy 1.16.6 to easy-install.pth file Installing f2py script to /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin Installing f2py3 script to /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin Installing f2py3.7 script to /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin Using /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages Finished processing dependencies for tiledb==0.5.8 /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/setuptools_scm/git.py:68: UserWarning: "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable" is shallow and may cause errors warnings.warn('"{}" is shallow and may cause errors'.format(wd.path)) /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/tiledb/libtiledb.pxd tree = Parsing.p_module(s, pxd, full_module_name) warning: tiledb/libtiledb.pyx:4760:0: Overriding cdef method with def method. [rtd-command-info] start-time: 2020-03-26T17:23:01.439105Z, end-time: 2020-03-26T17:23:01.660101Z, duration: 0, exit-code: 0 cat doc/source/conf.py #!/usr/bin/env python3 # -*- coding: utf-8 -*- # # -- Imports configuration ------------------------------------------------- import os import sys from os.path import abspath, join, dirname sys.path.insert(0, abspath(join(dirname(__file__)))) # -- ReadTheDocs configuration --------------------------------------------- # Special handling on ReadTheDocs builds. # Some of this code is from https://github.com/robotpy/robotpy-docs/blob/master/conf.py readthedocs = os.environ.get('READTHEDOCS', None) == 'True' rtd_version = os.environ.get('READTHEDOCS_VERSION', 'latest') rtd_version = rtd_version if rtd_version in ['stable', 'latest'] else 'stable' # -- Project information ----------------------------------------------------- project = 'TileDB-Py' copyright = '2019, TileDB, Inc.' author = 'TileDB, Inc.' # The short X.Y version version = '0.4' # The full version, including alpha/beta/rc tags release = '0.4.0' # -- General configuration --------------------------------------------------- # If your documentation needs a minimal Sphinx version, state it here. # # needs_sphinx = '1.0' # Add any Sphinx extension module names here, as strings. They can be # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom # ones. extensions = [ 'sphinx.ext.autodoc', 'sphinx.ext.doctest', 'sphinx.ext.intersphinx', ] # Mapping for linking between RTD subprojects. if readthedocs: intersphinx_mapping = { 'tiledb': ('https://tiledb-inc-tiledb.readthedocs-hosted.com/en/%s/' % rtd_version, None), 'tiledb-py': ('https://tiledb-inc-tiledb.readthedocs-hosted.com/projects/python-api/en/%s/' % rtd_version, None), 'python': ('https://docs.python.org/', None) } # Add any paths that contain templates here, relative to this directory. templates_path = ['_templates'] # The suffix(es) of source filenames. # You can specify multiple suffix as a list of string: # # source_suffix = ['.rst', '.md'] source_suffix = '.rst' # The master toctree document. master_doc = 'index' # The language for content autogenerated by Sphinx. Refer to documentation # for a list of supported languages. # # This is also used if you do content translation via gettext catalogs. # Usually you set "language" from the command line for these cases. language = None # List of patterns, relative to source directory, that match files and # directories to ignore when looking for source files. # This pattern also affects html_static_path and html_extra_path . exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store'] # The name of the Pygments (syntax highlighting) style to use. pygments_style = 'friendly' # -- Options for HTML output ------------------------------------------------- html_static_path = ['_static'] html_logo = '_static/tileDB_uppercase_600_112.png' html_favicon = '_static/favicon.ico' if readthedocs: html_theme = 'default' else: import sphinx_rtd_theme html_theme = 'sphinx_rtd_theme' html_theme_path = [sphinx_rtd_theme.get_html_theme_path()] # -- Options for HTMLHelp output --------------------------------------------- # Output file base name for HTML help builder. htmlhelp_basename = 'TileDB-Pydoc' # -- Options for LaTeX output ------------------------------------------------ latex_elements = { # The paper size ('letterpaper' or 'a4paper'). # # 'papersize': 'letterpaper', # The font size ('10pt', '11pt' or '12pt'). # # 'pointsize': '10pt', # Additional stuff for the LaTeX preamble. # # 'preamble': '', # Latex figure (float) alignment # # 'figure_align': 'htbp', } # Grouping the document tree into LaTeX files. List of tuples # (source start file, target name, title, # author, documentclass [howto, manual, or own class]). latex_documents = [ (master_doc, 'TileDB-Py.tex', 'TileDB-Py Documentation', 'TileDB, Inc.', 'manual'), ] # -- Options for manual page output ------------------------------------------ # One entry per manual page. List of tuples # (source start file, name, description, authors, manual section). man_pages = [ (master_doc, 'tiledb-py', 'TileDB-Py Documentation', [author], 1) ] # -- Options for Texinfo output ---------------------------------------------- # Grouping the document tree into Texinfo files. List of tuples # (source start file, target name, title, author, # dir menu entry, description, category) texinfo_documents = [ (master_doc, 'TileDB-Py', 'TileDB-Py Documentation', author, 'TileDB-Py', 'One line description of project.', 'Miscellaneous'), ] # -- Custom Document processing ---------------------------------------------- # Generate the sidebar automatically so that it is identical across all subprojects. # This (and gensidebar.py) from https://github.com/robotpy/robotpy-docs import gensidebar gensidebar.generate_sidebar({'on_rtd': readthedocs, 'rtd_version': rtd_version}, 'tiledb-py') # -- Custom setup ----------------------------------------------------------- def setup(app): app.add_stylesheet('custom.css') ########################################################################### # auto-created readthedocs.org specific configuration # ########################################################################### # # The following code was added during an automated build on readthedocs.org # It is auto created and injected for every build. The result is based on the # conf.py.tmpl file found in the readthedocs.org codebase: # https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl # import importlib import sys import os.path from six import string_types from sphinx import version_info # Get suffix for proper linking to GitHub # This is deprecated in Sphinx 1.3+, # as each page can have its own suffix if globals().get('source_suffix', False): if isinstance(source_suffix, string_types): SUFFIX = source_suffix elif isinstance(source_suffix, (list, tuple)): # Sphinx >= 1.3 supports list/tuple to define multiple suffixes SUFFIX = source_suffix[0] elif isinstance(source_suffix, dict): # Sphinx >= 1.8 supports a mapping dictionary for multiple suffixes SUFFIX = list(source_suffix.keys())[0] # make a ``list()`` for py2/py3 compatibility else: # default to .rst SUFFIX = '.rst' else: SUFFIX = '.rst' # Add RTD Static Path. Add to the end because it overwrites previous files. if not 'html_static_path' in globals(): html_static_path = [] if os.path.exists('_static'): html_static_path.append('_static') # Add RTD Theme only if they aren't overriding it already using_rtd_theme = ( ( 'html_theme' in globals() and html_theme in ['default'] and # Allow people to bail with a hack of having an html_style 'html_style' not in globals() ) or 'html_theme' not in globals() ) if using_rtd_theme: theme = importlib.import_module('sphinx_rtd_theme') html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} if 'html_theme_path' in globals(): html_theme_path.append(theme.get_html_theme_path()) else: html_theme_path = [theme.get_html_theme_path()] if globals().get('websupport2_base_url', False): websupport2_base_url = 'https://readthedocs.com/websupport' websupport2_static_url = 'https://assets.readthedocs.com/' #Add project information to the template context. context = { 'using_theme': using_rtd_theme, 'html_theme': html_theme, 'current_version': "stable", 'version_slug': "stable", 'MEDIA_URL': "https://media.readthedocs.com/media/", 'STATIC_URL': "https://assets.readthedocs.com/", 'PRODUCTION_DOMAIN': "readthedocs.com", 'versions': [ ("latest", "/en/latest/"), ("stable", "/en/stable/"), ("0.3.0", "/en/0.3.0/"), ("0.2.0", "/en/0.2.0/"), ], 'downloads': [ ], 'subprojects': [ ], 'slug': 'tiledb-inc-tiledb-py', 'name': u'TileDB-Py', 'rtd_language': u'en', 'programming_language': u'words', 'canonical_url': 'https://tiledb-inc-tiledb.readthedocs-hosted.com/projects/tiledb-py/en/stable/', 'analytics_code': '', 'single_version': False, 'conf_py_path': '/doc/source/', 'api_host': 'https://readthedocs.com', 'proxied_api_host': '/_', 'github_user': 'TileDB-Inc', 'github_repo': 'TileDB-Py', 'github_version': 'de2aff00b97498420199a9d16c8375df70e94780', 'display_github': True, 'bitbucket_user': 'None', 'bitbucket_repo': 'None', 'bitbucket_version': 'de2aff00b97498420199a9d16c8375df70e94780', 'display_bitbucket': False, 'gitlab_user': 'None', 'gitlab_repo': 'None', 'gitlab_version': 'de2aff00b97498420199a9d16c8375df70e94780', 'display_gitlab': False, 'READTHEDOCS': True, 'using_theme': (html_theme == "default"), 'new_theme': (html_theme == "sphinx_rtd_theme"), 'source_suffix': SUFFIX, 'ad_free': False, 'user_analytics_code': '', 'global_analytics_code': 'UA-17997319-2', 'commit': 'de2aff00', } if 'html_context' in globals(): html_context.update(context) else: html_context = context # Add custom RTD extension if 'extensions' in globals(): # Insert at the beginning because it can interfere # with other extensions. # See https://github.com/rtfd/readthedocs.org/pull/4054 extensions.insert(0, "readthedocs_ext.readthedocs") else: extensions = ["readthedocs_ext.readthedocs"] # Add External version warning banner to the external version documentation if 'tag' == 'external': extensions.insert(1, "readthedocs_ext.external_version_warning") project_language = 'en' # User's Sphinx configurations language_user = globals().get('language', None) latex_engine_user = globals().get('latex_engine', None) latex_elements_user = globals().get('latex_elements', None) # Remove this once xindy gets installed in Docker image and XINDYOPS # env variable is supported # https://github.com/rtfd/readthedocs-docker-images/pull/98 latex_use_xindy = False chinese = any([ language_user in ('zh_CN', 'zh_TW'), project_language in ('zh_CN', 'zh_TW'), ]) japanese = any([ language_user == 'ja', project_language == 'ja', ]) if chinese: latex_engine = latex_engine_user or 'xelatex' latex_elements_rtd = { 'preamble': '\\usepackage[UTF8]{ctex}\n', } latex_elements = latex_elements_user or latex_elements_rtd elif japanese: latex_engine = latex_engine_user or 'platex' [rtd-command-info] start-time: 2020-03-26T17:23:01.880259Z, end-time: 2020-03-26T17:23:05.909023Z, duration: 4, exit-code: 0 python sphinx-build -T -b readthedocs -d _build/doctrees-readthedocs -D language=en . _build/html Running Sphinx v1.8.5 loading translations [en]... done making output directory... loading intersphinx inventory from https://tiledb-inc-tiledb.readthedocs-hosted.com/en/stable/objects.inv... loading intersphinx inventory from https://tiledb-inc-tiledb.readthedocs-hosted.com/projects/python-api/en/stable/objects.inv... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory 'https://tiledb-inc-tiledb.readthedocs-hosted.com/projects/python-api/en/stable/objects.inv' not fetchable due to : 404 Client Error: Not Found for url: https://tiledb-inc-tiledb.readthedocs-hosted.com/projects/python-api/en/stable/objects.inv loading intersphinx inventory from https://docs.python.org/objects.inv... intersphinx inventory has moved: https://docs.python.org/objects.inv -> https://docs.python.org/3/objects.inv building [mo]: targets for 0 po files that are out of date building [readthedocs]: targets for 2 source files that are out of date updating environment: 2 added, 0 changed, 0 removed reading sources... [ 50%] index reading sources... [100%] python-api looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 50%] index writing output... [100%] python-api generating indices... genindex writing additional pages... search copying static files... done copying readthedocs static files... done copying searchtools... done copying extra files... done dumping search index in English (code: en) ... done dumping object inventory... done build succeeded, 1 warning. The HTML pages are in _build/html.