Read the Docs build information Build id: 307072 Project: tiledb-inc-tiledb-py Version: stable Commit: de2aff00b97498420199a9d16c8375df70e94780 Date: 2020-03-25T19:29:07.897083Z State: finished Success: True [rtd-command-info] start-time: 2020-03-25T19:29:10.794102Z, end-time: 2020-03-25T19:29:12.359047Z, duration: 1, exit-code: 0 git clone --no-single-branch --depth 50 https://github.com/TileDB-Inc/TileDB-Py.git . Cloning into '.'... [rtd-command-info] start-time: 2020-03-25T19:29:12.811430Z, end-time: 2020-03-25T19:29:13.132162Z, duration: 0, exit-code: 0 git checkout --force 699f45005f898ea52feb521a637d03e1bd281d03 Note: checking out '699f45005f898ea52feb521a637d03e1bd281d03'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at 699f450 Release 0.5.8 [rtd-command-info] start-time: 2020-03-25T19:29:13.288225Z, end-time: 2020-03-25T19:29:13.602173Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2020-03-25T19:29:15.018098Z, end-time: 2020-03-25T19:29:20.295726Z, duration: 5, exit-code: 0 python3.7 -mvirtualenv Using base prefix '/home/docs/.pyenv/versions/3.7.3' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2020-03-25T19:29:20.457934Z, end-time: 2020-03-25T19:29:21.479303Z, duration: 1, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip Requirement already up-to-date: pip in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (20.0.2) [rtd-command-info] start-time: 2020-03-25T19:29:21.642733Z, end-time: 2020-03-25T19:29:33.242943Z, duration: 11, exit-code: 0 python -m pip install --upgrade --no-cache-dir Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1 Collecting Pygments==2.3.1 Downloading Pygments-2.3.1-py2.py3-none-any.whl (849 kB) Collecting setuptools==41.0.1 Downloading setuptools-41.0.1-py2.py3-none-any.whl (575 kB) Collecting docutils==0.14 Downloading docutils-0.14-py3-none-any.whl (543 kB) Collecting mock==1.0.1 Downloading mock-1.0.1.tar.gz (818 kB) Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.5-py2.py3-none-any.whl (3.1 MB) Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) Collecting readthedocs-sphinx-ext<1.1 Downloading readthedocs_sphinx_ext-1.0.1-py2.py3-none-any.whl (14 kB) Collecting future Downloading future-0.18.2.tar.gz (829 kB) Collecting imagesize Downloading imagesize-1.2.0-py2.py3-none-any.whl (4.8 kB) Collecting packaging Downloading packaging-20.3-py2.py3-none-any.whl (37 kB) Collecting babel!=2.0,>=1.3 Downloading Babel-2.8.0-py2.py3-none-any.whl (8.6 MB) Collecting requests>=2.0.0 Downloading requests-2.23.0-py2.py3-none-any.whl (58 kB) Collecting Jinja2>=2.3 Downloading Jinja2-2.11.1-py2.py3-none-any.whl (126 kB) Collecting sphinxcontrib-websupport Downloading sphinxcontrib_websupport-1.2.1-py2.py3-none-any.whl (39 kB) Collecting six>=1.5 Downloading six-1.14.0-py2.py3-none-any.whl (10 kB) Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.0.0-py2.py3-none-any.whl (97 kB) Collecting pyparsing>=2.0.2 Downloading pyparsing-2.4.6-py2.py3-none-any.whl (67 kB) Collecting pytz>=2015.7 Downloading pytz-2019.3-py2.py3-none-any.whl (509 kB) Collecting urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 Downloading urllib3-1.25.8-py2.py3-none-any.whl (125 kB) Collecting idna<3,>=2.5 Downloading idna-2.9-py2.py3-none-any.whl (58 kB) Collecting certifi>=2017.4.17 Downloading certifi-2019.11.28-py2.py3-none-any.whl (156 kB) Collecting chardet<4,>=3.0.2 Downloading chardet-3.0.4-py2.py3-none-any.whl (133 kB) Collecting MarkupSafe>=0.23 Downloading MarkupSafe-1.1.1-cp37-cp37m-manylinux1_x86_64.whl (27 kB) Building wheels for collected packages: mock, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23754 sha256=ec769b18e8fafd81907f650b6c5388c8f38190ed76e888fb15f8587d61c738b7 Stored in directory: /tmp/pip-ephem-wheel-cache-tq76dezk/wheels/16/03/37/f0a64ab894c9102906f192db1a4071b7592292ad661563c69b Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491058 sha256=23882792ef0007e11add291aae3065658a83f1c17bbbab56e7cb33d8dbe9ce79 Stored in directory: /tmp/pip-ephem-wheel-cache-tq76dezk/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0 Successfully built mock future Installing collected packages: Pygments, setuptools, docutils, mock, pillow, alabaster, future, commonmark, imagesize, pyparsing, six, packaging, pytz, babel, urllib3, idna, certifi, chardet, requests, MarkupSafe, Jinja2, sphinxcontrib-websupport, snowballstemmer, sphinx, recommonmark, sphinx-rtd-theme, readthedocs-sphinx-ext Attempting uninstall: setuptools Found existing installation: setuptools 46.1.3 Uninstalling setuptools-46.1.3: Successfully uninstalled setuptools-46.1.3 Successfully installed Jinja2-2.11.1 MarkupSafe-1.1.1 Pygments-2.3.1 alabaster-0.7.12 babel-2.8.0 certifi-2019.11.28 chardet-3.0.4 commonmark-0.8.1 docutils-0.14 future-0.18.2 idna-2.9 imagesize-1.2.0 mock-1.0.1 packaging-20.3 pillow-5.4.1 pyparsing-2.4.6 pytz-2019.3 readthedocs-sphinx-ext-1.0.1 recommonmark-0.5.0 requests-2.23.0 setuptools-41.0.1 six-1.14.0 snowballstemmer-2.0.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-websupport-1.2.1 urllib3-1.25.8 [rtd-command-info] start-time: 2020-03-25T19:29:33.410675Z, end-time: 2020-03-25T19:29:45.992678Z, duration: 12, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r requirements.txt Collecting cmake>=3.11.0 Downloading cmake-3.16.3-py3-none-manylinux2010_x86_64.whl (17.0 MB) Collecting cython>=0.29 Downloading Cython-0.29.16-cp37-cp37m-manylinux1_x86_64.whl (2.1 MB) Collecting numpy==1.16.* Downloading numpy-1.16.6-cp37-cp37m-manylinux1_x86_64.whl (17.3 MB) Requirement already satisfied: setuptools>=18.0.1 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 4)) (41.0.1) Collecting setuptools-scm>=1.5.4 Downloading setuptools_scm-3.5.0-py2.py3-none-any.whl (26 kB) Requirement already satisfied: wheel>=0.30 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 6)) (0.34.2) Collecting psutil Downloading psutil-5.7.0.tar.gz (449 kB) Building wheels for collected packages: psutil Building wheel for psutil (setup.py): started Building wheel for psutil (setup.py): finished with status 'done' Created wheel for psutil: filename=psutil-5.7.0-cp37-cp37m-linux_x86_64.whl size=276461 sha256=3b712996d0243795e324d093f5c9aebb5a3fe3202cb7aa55ab11f73ae88494e4 Stored in directory: /tmp/pip-ephem-wheel-cache-um3eqh_q/wheels/b6/e7/50/aee9cc966163d74430f13f208171dee22f11efa4a4a826661c Successfully built psutil Installing collected packages: cmake, cython, numpy, setuptools-scm, psutil Successfully installed cmake-3.16.3 cython-0.29.16 numpy-1.16.6 psutil-5.7.0 setuptools-scm-3.5.0 [rtd-command-info] start-time: 2020-03-25T19:29:46.149990Z, end-time: 2020-03-25T20:29:16.358344Z, duration: 3570, exit-code: 137 python ./setup.py install --force libtiledb_exists checking 'library_dirs': [] libtiledb_exists found: 'None' running install running bdist_egg GNU Make 4.1 Built for x86_64-pc-linux-gnu Copyright (C) 1988-2014 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. -- The C compiler identification is GNU 7.4.0 -- The CXX compiler identification is GNU 7.4.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Starting TileDB superbuild. -- Found Bzip2: /usr/lib/x86_64-linux-gnu/libbz2.so -- Could NOT find LZ4 (missing: LZ4_LIBRARIES LZ4_INCLUDE_DIR) -- Adding LZ4 as an external project -- Could NOT find Spdlog (missing: SPDLOG_INCLUDE_DIR) -- Adding Spdlog as an external project -- Found Zlib: /usr/lib/x86_64-linux-gnu/libz.so -- Could NOT find Zstd (missing: ZSTD_LIBRARIES ZSTD_INCLUDE_DIR) -- Adding Zstd as an external project -- Found OpenSSL: /usr/lib/x86_64-linux-gnu/libssl.so -- OpenSSL crypto: /usr/lib/x86_64-linux-gnu/libcrypto.so -- root: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/install;/usr/local/opt/openssl -- Could NOT find CURL (missing: CURL_LIBRARY CURL_INCLUDE_DIR) -- Could NOT find Curl (missing: CURL_LIBRARIES CURL_INCLUDE_DIR) -- Adding Curl as an external project CMake Warning at cmake/Modules/FindCurl_EP.cmake:106 (message): TileDB FindOpenSSL_EP did not set TILEDB_OPENSSL_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) CMake Warning at cmake/Modules/FindCurl_EP.cmake:118 (message): TileDB FindZlib_EP did not set TILEDB_ZLIB_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) -- Could NOT find AWSSDK -- Adding AWSSDK as an external project -- Could NOT find TBB (missing: TBB_LIBRARIES TBB_INCLUDE_DIR) -- Adding TBB as an external project -- Not found clang-tidy -- Not found clang-format -- Found Doxygen: /usr/bin/doxygen (found version "1.8.13") found components: doxygen dot -- Install prefix is /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/dist -- Configuring done -- Generating done -- Build files have been written to: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build Scanning dependencies of target ep_curl [ 1%] Creating directories for 'ep_curl' [ 3%] Performing download step (download, verify and extract) for 'ep_curl' -- ep_curl download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-download-*.log [ 5%] No patch step for 'ep_curl' [ 7%] No update step for 'ep_curl' [ 8%] Performing configure step for 'ep_curl' -- ep_curl configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-configure-*.log [ 10%] Performing build step for 'ep_curl' -- ep_curl build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-build-*.log [ 12%] Performing install step for 'ep_curl' -- ep_curl install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-install-*.log [ 14%] Completed 'ep_curl' [ 14%] Built target ep_curl Scanning dependencies of target ep_awssdk [ 16%] Creating directories for 'ep_awssdk' [ 17%] Performing download step (download, verify and extract) for 'ep_awssdk' -- ep_awssdk download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-download-*.log [ 19%] No patch step for 'ep_awssdk' [ 21%] No update step for 'ep_awssdk' [ 23%] Performing configure step for 'ep_awssdk' -- ep_awssdk configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-configure-*.log [ 25%] Performing build step for 'ep_awssdk' Command killed due to excessive memory consumption [rtd-command-info] start-time: 2020-03-25T20:32:11.137574Z, end-time: 2020-03-25T20:32:12.462349Z, duration: 1, exit-code: 0 git clone --no-single-branch --depth 50 https://github.com/TileDB-Inc/TileDB-Py.git . Cloning into '.'... [rtd-command-info] start-time: 2020-03-25T20:32:12.919872Z, end-time: 2020-03-25T20:32:13.252337Z, duration: 0, exit-code: 0 git checkout --force 699f45005f898ea52feb521a637d03e1bd281d03 Note: checking out '699f45005f898ea52feb521a637d03e1bd281d03'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at 699f450 Release 0.5.8 [rtd-command-info] start-time: 2020-03-25T20:32:13.415878Z, end-time: 2020-03-25T20:32:13.753137Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2020-03-25T20:32:15.288520Z, end-time: 2020-03-25T20:32:20.117206Z, duration: 4, exit-code: 0 python3.7 -mvirtualenv Using base prefix '/home/docs/.pyenv/versions/3.7.3' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2020-03-25T20:32:20.281384Z, end-time: 2020-03-25T20:32:21.314022Z, duration: 1, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip Requirement already up-to-date: pip in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (20.0.2) [rtd-command-info] start-time: 2020-03-25T20:32:21.474625Z, end-time: 2020-03-25T20:32:33.805645Z, duration: 12, exit-code: 0 python -m pip install --upgrade --no-cache-dir Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1 Collecting Pygments==2.3.1 Downloading Pygments-2.3.1-py2.py3-none-any.whl (849 kB) Collecting setuptools==41.0.1 Downloading setuptools-41.0.1-py2.py3-none-any.whl (575 kB) Collecting docutils==0.14 Downloading docutils-0.14-py3-none-any.whl (543 kB) Collecting mock==1.0.1 Downloading mock-1.0.1.tar.gz (818 kB) Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.5-py2.py3-none-any.whl (3.1 MB) Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) Collecting readthedocs-sphinx-ext<1.1 Downloading readthedocs_sphinx_ext-1.0.1-py2.py3-none-any.whl (14 kB) Collecting future Downloading future-0.18.2.tar.gz (829 kB) Collecting six>=1.5 Downloading six-1.14.0-py2.py3-none-any.whl (10 kB) Collecting requests>=2.0.0 Downloading requests-2.23.0-py2.py3-none-any.whl (58 kB) Collecting packaging Downloading packaging-20.3-py2.py3-none-any.whl (37 kB) Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.0.0-py2.py3-none-any.whl (97 kB) Collecting Jinja2>=2.3 Downloading Jinja2-2.11.1-py2.py3-none-any.whl (126 kB) Collecting sphinxcontrib-websupport Downloading sphinxcontrib_websupport-1.2.1-py2.py3-none-any.whl (39 kB) Collecting babel!=2.0,>=1.3 Downloading Babel-2.8.0-py2.py3-none-any.whl (8.6 MB) Collecting imagesize Downloading imagesize-1.2.0-py2.py3-none-any.whl (4.8 kB) Collecting certifi>=2017.4.17 Downloading certifi-2019.11.28-py2.py3-none-any.whl (156 kB) Collecting chardet<4,>=3.0.2 Downloading chardet-3.0.4-py2.py3-none-any.whl (133 kB) Collecting urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 Downloading urllib3-1.25.8-py2.py3-none-any.whl (125 kB) Collecting idna<3,>=2.5 Downloading idna-2.9-py2.py3-none-any.whl (58 kB) Collecting pyparsing>=2.0.2 Downloading pyparsing-2.4.6-py2.py3-none-any.whl (67 kB) Collecting MarkupSafe>=0.23 Downloading MarkupSafe-1.1.1-cp37-cp37m-manylinux1_x86_64.whl (27 kB) Collecting pytz>=2015.7 Downloading pytz-2019.3-py2.py3-none-any.whl (509 kB) Building wheels for collected packages: mock, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23754 sha256=b8c5d955719d5a9978416a8a568a1175d2021a0043457c4c01fe747b808ad540 Stored in directory: /tmp/pip-ephem-wheel-cache-vcnmyzyu/wheels/16/03/37/f0a64ab894c9102906f192db1a4071b7592292ad661563c69b Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491058 sha256=8675478e7a0a3c17b2abace074ccd7ca8196a5cdc6f870019dccee67e55a112c Stored in directory: /tmp/pip-ephem-wheel-cache-vcnmyzyu/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0 Successfully built mock future Installing collected packages: Pygments, setuptools, docutils, mock, pillow, alabaster, future, commonmark, six, certifi, chardet, urllib3, idna, requests, pyparsing, packaging, snowballstemmer, MarkupSafe, Jinja2, sphinxcontrib-websupport, pytz, babel, imagesize, sphinx, recommonmark, sphinx-rtd-theme, readthedocs-sphinx-ext Attempting uninstall: setuptools Found existing installation: setuptools 46.1.3 Uninstalling setuptools-46.1.3: Successfully uninstalled setuptools-46.1.3 Successfully installed Jinja2-2.11.1 MarkupSafe-1.1.1 Pygments-2.3.1 alabaster-0.7.12 babel-2.8.0 certifi-2019.11.28 chardet-3.0.4 commonmark-0.8.1 docutils-0.14 future-0.18.2 idna-2.9 imagesize-1.2.0 mock-1.0.1 packaging-20.3 pillow-5.4.1 pyparsing-2.4.6 pytz-2019.3 readthedocs-sphinx-ext-1.0.1 recommonmark-0.5.0 requests-2.23.0 setuptools-41.0.1 six-1.14.0 snowballstemmer-2.0.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-websupport-1.2.1 urllib3-1.25.8 [rtd-command-info] start-time: 2020-03-25T20:32:34.458044Z, end-time: 2020-03-25T20:32:46.212916Z, duration: 11, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r requirements.txt Collecting cmake>=3.11.0 Downloading cmake-3.16.3-py3-none-manylinux2010_x86_64.whl (17.0 MB) Collecting cython>=0.29 Downloading Cython-0.29.16-cp37-cp37m-manylinux1_x86_64.whl (2.1 MB) Collecting numpy==1.16.* Downloading numpy-1.16.6-cp37-cp37m-manylinux1_x86_64.whl (17.3 MB) Requirement already satisfied: setuptools>=18.0.1 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 4)) (41.0.1) Collecting setuptools-scm>=1.5.4 Downloading setuptools_scm-3.5.0-py2.py3-none-any.whl (26 kB) Requirement already satisfied: wheel>=0.30 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 6)) (0.34.2) Collecting psutil Downloading psutil-5.7.0.tar.gz (449 kB) Building wheels for collected packages: psutil Building wheel for psutil (setup.py): started Building wheel for psutil (setup.py): finished with status 'done' Created wheel for psutil: filename=psutil-5.7.0-cp37-cp37m-linux_x86_64.whl size=276459 sha256=4b81aa272aba0230a140d5520e19d7b7bb7556472b1173fafe669316f53116a9 Stored in directory: /tmp/pip-ephem-wheel-cache-sl_h0ax3/wheels/b6/e7/50/aee9cc966163d74430f13f208171dee22f11efa4a4a826661c Successfully built psutil Installing collected packages: cmake, cython, numpy, setuptools-scm, psutil Successfully installed cmake-3.16.3 cython-0.29.16 numpy-1.16.6 psutil-5.7.0 setuptools-scm-3.5.0 [rtd-command-info] start-time: 2020-03-25T20:32:46.380205Z, end-time: 2020-03-25T21:32:18.308571Z, duration: 3571, exit-code: 137 python ./setup.py install --force libtiledb_exists checking 'library_dirs': [] libtiledb_exists found: 'None' running install running bdist_egg GNU Make 4.1 Built for x86_64-pc-linux-gnu Copyright (C) 1988-2014 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. -- The C compiler identification is GNU 7.4.0 -- The CXX compiler identification is GNU 7.4.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Starting TileDB superbuild. -- Found Bzip2: /usr/lib/x86_64-linux-gnu/libbz2.so -- Could NOT find LZ4 (missing: LZ4_LIBRARIES LZ4_INCLUDE_DIR) -- Adding LZ4 as an external project -- Could NOT find Spdlog (missing: SPDLOG_INCLUDE_DIR) -- Adding Spdlog as an external project -- Found Zlib: /usr/lib/x86_64-linux-gnu/libz.so -- Could NOT find Zstd (missing: ZSTD_LIBRARIES ZSTD_INCLUDE_DIR) -- Adding Zstd as an external project -- Found OpenSSL: /usr/lib/x86_64-linux-gnu/libssl.so -- OpenSSL crypto: /usr/lib/x86_64-linux-gnu/libcrypto.so -- root: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/install;/usr/local/opt/openssl -- Could NOT find CURL (missing: CURL_LIBRARY CURL_INCLUDE_DIR) -- Could NOT find Curl (missing: CURL_LIBRARIES CURL_INCLUDE_DIR) -- Adding Curl as an external project CMake Warning at cmake/Modules/FindCurl_EP.cmake:106 (message): TileDB FindOpenSSL_EP did not set TILEDB_OPENSSL_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) CMake Warning at cmake/Modules/FindCurl_EP.cmake:118 (message): TileDB FindZlib_EP did not set TILEDB_ZLIB_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) -- Could NOT find AWSSDK -- Adding AWSSDK as an external project -- Could NOT find TBB (missing: TBB_LIBRARIES TBB_INCLUDE_DIR) -- Adding TBB as an external project -- Not found clang-tidy -- Not found clang-format -- Found Doxygen: /usr/bin/doxygen (found version "1.8.13") found components: doxygen dot -- Install prefix is /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/dist -- Configuring done -- Generating done -- Build files have been written to: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build Scanning dependencies of target ep_curl [ 1%] Creating directories for 'ep_curl' [ 3%] Performing download step (download, verify and extract) for 'ep_curl' -- ep_curl download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-download-*.log [ 5%] No patch step for 'ep_curl' [ 7%] No update step for 'ep_curl' [ 8%] Performing configure step for 'ep_curl' -- ep_curl configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-configure-*.log [ 10%] Performing build step for 'ep_curl' -- ep_curl build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-build-*.log [ 12%] Performing install step for 'ep_curl' -- ep_curl install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-install-*.log [ 14%] Completed 'ep_curl' [ 14%] Built target ep_curl Scanning dependencies of target ep_awssdk [ 16%] Creating directories for 'ep_awssdk' [ 17%] Performing download step (download, verify and extract) for 'ep_awssdk' -- ep_awssdk download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-download-*.log [ 19%] No patch step for 'ep_awssdk' [ 21%] No update step for 'ep_awssdk' [ 23%] Performing configure step for 'ep_awssdk' -- ep_awssdk configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-configure-*.log [ 25%] Performing build step for 'ep_awssdk' Command killed due to excessive memory consumption [rtd-command-info] start-time: 2020-03-25T21:32:11.404329Z, end-time: 2020-03-25T21:32:12.688191Z, duration: 1, exit-code: 0 git clone --no-single-branch --depth 50 https://github.com/TileDB-Inc/TileDB-Py.git . Cloning into '.'... [rtd-command-info] start-time: 2020-03-25T21:32:13.097123Z, end-time: 2020-03-25T21:32:13.424222Z, duration: 0, exit-code: 0 git checkout --force de2aff00b97498420199a9d16c8375df70e94780 Note: checking out 'de2aff00b97498420199a9d16c8375df70e94780'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at de2aff0 Add error check for libtiledb build validity in setup.py [rtd-command-info] start-time: 2020-03-25T21:32:13.580376Z, end-time: 2020-03-25T21:32:13.900183Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2020-03-25T21:32:15.347892Z, end-time: 2020-03-25T21:32:20.085383Z, duration: 4, exit-code: 0 python3.7 -mvirtualenv Using base prefix '/home/docs/.pyenv/versions/3.7.3' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2020-03-25T21:32:20.257634Z, end-time: 2020-03-25T21:32:21.293500Z, duration: 1, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip Requirement already up-to-date: pip in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (20.0.2) [rtd-command-info] start-time: 2020-03-25T21:32:21.521093Z, end-time: 2020-03-25T21:32:33.409278Z, duration: 11, exit-code: 0 python -m pip install --upgrade --no-cache-dir Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1 Collecting Pygments==2.3.1 Downloading Pygments-2.3.1-py2.py3-none-any.whl (849 kB) Collecting setuptools==41.0.1 Downloading setuptools-41.0.1-py2.py3-none-any.whl (575 kB) Collecting docutils==0.14 Downloading docutils-0.14-py3-none-any.whl (543 kB) Collecting mock==1.0.1 Downloading mock-1.0.1.tar.gz (818 kB) Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.5-py2.py3-none-any.whl (3.1 MB) Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) Collecting readthedocs-sphinx-ext<1.1 Downloading readthedocs_sphinx_ext-1.0.1-py2.py3-none-any.whl (14 kB) Collecting future Downloading future-0.18.2.tar.gz (829 kB) Collecting packaging Downloading packaging-20.3-py2.py3-none-any.whl (37 kB) Collecting requests>=2.0.0 Downloading requests-2.23.0-py2.py3-none-any.whl (58 kB) Collecting Jinja2>=2.3 Downloading Jinja2-2.11.1-py2.py3-none-any.whl (126 kB) Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.0.0-py2.py3-none-any.whl (97 kB) Collecting imagesize Downloading imagesize-1.2.0-py2.py3-none-any.whl (4.8 kB) Collecting six>=1.5 Downloading six-1.14.0-py2.py3-none-any.whl (10 kB) Collecting sphinxcontrib-websupport Downloading sphinxcontrib_websupport-1.2.1-py2.py3-none-any.whl (39 kB) Collecting babel!=2.0,>=1.3 Downloading Babel-2.8.0-py2.py3-none-any.whl (8.6 MB) Collecting pyparsing>=2.0.2 Downloading pyparsing-2.4.6-py2.py3-none-any.whl (67 kB) Collecting urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 Downloading urllib3-1.25.8-py2.py3-none-any.whl (125 kB) Collecting certifi>=2017.4.17 Downloading certifi-2019.11.28-py2.py3-none-any.whl (156 kB) Collecting chardet<4,>=3.0.2 Downloading chardet-3.0.4-py2.py3-none-any.whl (133 kB) Collecting idna<3,>=2.5 Downloading idna-2.9-py2.py3-none-any.whl (58 kB) Collecting MarkupSafe>=0.23 Downloading MarkupSafe-1.1.1-cp37-cp37m-manylinux1_x86_64.whl (27 kB) Collecting pytz>=2015.7 Downloading pytz-2019.3-py2.py3-none-any.whl (509 kB) Building wheels for collected packages: mock, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23754 sha256=786e5cc11297b0c92d5df6998deece7bf67ff2e8fe5d3a88d23cfacac9b75fcc Stored in directory: /tmp/pip-ephem-wheel-cache-wp5r2xrl/wheels/16/03/37/f0a64ab894c9102906f192db1a4071b7592292ad661563c69b Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491058 sha256=fac9f223c02020e28dd8a77b5bf7fc6177c6ac8791691b814b9239218a2010f2 Stored in directory: /tmp/pip-ephem-wheel-cache-wp5r2xrl/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0 Successfully built mock future Installing collected packages: Pygments, setuptools, docutils, mock, pillow, alabaster, future, commonmark, pyparsing, six, packaging, urllib3, certifi, chardet, idna, requests, MarkupSafe, Jinja2, snowballstemmer, imagesize, sphinxcontrib-websupport, pytz, babel, sphinx, recommonmark, sphinx-rtd-theme, readthedocs-sphinx-ext Attempting uninstall: setuptools Found existing installation: setuptools 46.1.3 Uninstalling setuptools-46.1.3: Successfully uninstalled setuptools-46.1.3 Successfully installed Jinja2-2.11.1 MarkupSafe-1.1.1 Pygments-2.3.1 alabaster-0.7.12 babel-2.8.0 certifi-2019.11.28 chardet-3.0.4 commonmark-0.8.1 docutils-0.14 future-0.18.2 idna-2.9 imagesize-1.2.0 mock-1.0.1 packaging-20.3 pillow-5.4.1 pyparsing-2.4.6 pytz-2019.3 readthedocs-sphinx-ext-1.0.1 recommonmark-0.5.0 requests-2.23.0 setuptools-41.0.1 six-1.14.0 snowballstemmer-2.0.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-websupport-1.2.1 urllib3-1.25.8 [rtd-command-info] start-time: 2020-03-25T21:32:33.571359Z, end-time: 2020-03-25T21:32:45.921294Z, duration: 12, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r requirements.txt Collecting cmake>=3.11.0 Downloading cmake-3.16.3-py3-none-manylinux2010_x86_64.whl (17.0 MB) Collecting cython>=0.29 Downloading Cython-0.29.16-cp37-cp37m-manylinux1_x86_64.whl (2.1 MB) Collecting numpy==1.16.* Downloading numpy-1.16.6-cp37-cp37m-manylinux1_x86_64.whl (17.3 MB) Requirement already satisfied: setuptools>=18.0.1 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 4)) (41.0.1) Collecting setuptools-scm>=1.5.4 Downloading setuptools_scm-3.5.0-py2.py3-none-any.whl (26 kB) Requirement already satisfied: wheel>=0.30 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 6)) (0.34.2) Collecting psutil Downloading psutil-5.7.0.tar.gz (449 kB) Building wheels for collected packages: psutil Building wheel for psutil (setup.py): started Building wheel for psutil (setup.py): finished with status 'done' Created wheel for psutil: filename=psutil-5.7.0-cp37-cp37m-linux_x86_64.whl size=276462 sha256=e0431da5f4479a9920dd41965272ad9fc42673eefb3b65bd6b867c443efc572b Stored in directory: /tmp/pip-ephem-wheel-cache-a7ldltk7/wheels/b6/e7/50/aee9cc966163d74430f13f208171dee22f11efa4a4a826661c Successfully built psutil Installing collected packages: cmake, cython, numpy, setuptools-scm, psutil Successfully installed cmake-3.16.3 cython-0.29.16 numpy-1.16.6 psutil-5.7.0 setuptools-scm-3.5.0 [rtd-command-info] start-time: 2020-03-25T21:32:46.079390Z, end-time: 2020-03-25T22:32:17.001455Z, duration: 3570, exit-code: 137 python ./setup.py install --force libtiledb_exists checking 'library_dirs': [] libtiledb_exists found: 'None' running install running bdist_egg GNU Make 4.1 Built for x86_64-pc-linux-gnu Copyright (C) 1988-2014 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. -- The C compiler identification is GNU 7.4.0 -- The CXX compiler identification is GNU 7.4.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Starting TileDB superbuild. -- Found Bzip2: /usr/lib/x86_64-linux-gnu/libbz2.so -- Could NOT find LZ4 (missing: LZ4_LIBRARIES LZ4_INCLUDE_DIR) -- Adding LZ4 as an external project -- Could NOT find Spdlog (missing: SPDLOG_INCLUDE_DIR) -- Adding Spdlog as an external project -- Found Zlib: /usr/lib/x86_64-linux-gnu/libz.so -- Could NOT find Zstd (missing: ZSTD_LIBRARIES ZSTD_INCLUDE_DIR) -- Adding Zstd as an external project -- Found OpenSSL: /usr/lib/x86_64-linux-gnu/libssl.so -- OpenSSL crypto: /usr/lib/x86_64-linux-gnu/libcrypto.so -- root: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/install;/usr/local/opt/openssl -- Could NOT find CURL (missing: CURL_LIBRARY CURL_INCLUDE_DIR) -- Could NOT find Curl (missing: CURL_LIBRARIES CURL_INCLUDE_DIR) -- Adding Curl as an external project CMake Warning at cmake/Modules/FindCurl_EP.cmake:106 (message): TileDB FindOpenSSL_EP did not set TILEDB_OPENSSL_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) CMake Warning at cmake/Modules/FindCurl_EP.cmake:118 (message): TileDB FindZlib_EP did not set TILEDB_ZLIB_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) -- Could NOT find AWSSDK -- Adding AWSSDK as an external project -- Could NOT find TBB (missing: TBB_LIBRARIES TBB_INCLUDE_DIR) -- Adding TBB as an external project -- Not found clang-tidy -- Not found clang-format -- Found Doxygen: /usr/bin/doxygen (found version "1.8.13") found components: doxygen dot -- Install prefix is /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/dist -- Configuring done -- Generating done -- Build files have been written to: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build Scanning dependencies of target ep_spdlog [ 1%] Creating directories for 'ep_spdlog' [ 3%] Performing download step (download, verify and extract) for 'ep_spdlog' -- ep_spdlog download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_spdlog-stamp/ep_spdlog-download-*.log [ 5%] No patch step for 'ep_spdlog' [ 7%] No update step for 'ep_spdlog' [ 8%] No configure step for 'ep_spdlog' [ 10%] No build step for 'ep_spdlog' [ 12%] No install step for 'ep_spdlog' [ 14%] Completed 'ep_spdlog' [ 14%] Built target ep_spdlog Scanning dependencies of target ep_curl [ 16%] Creating directories for 'ep_curl' [ 17%] Performing download step (download, verify and extract) for 'ep_curl' -- ep_curl download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-download-*.log [ 19%] No patch step for 'ep_curl' [ 21%] No update step for 'ep_curl' [ 23%] Performing configure step for 'ep_curl' -- ep_curl configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-configure-*.log [ 25%] Performing build step for 'ep_curl' -- ep_curl build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-build-*.log [ 26%] Performing install step for 'ep_curl' -- ep_curl install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-install-*.log [ 28%] Completed 'ep_curl' [ 28%] Built target ep_curl Scanning dependencies of target ep_lz4 [ 30%] Creating directories for 'ep_lz4' [ 32%] Performing download step (download, verify and extract) for 'ep_lz4' -- ep_lz4 download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_lz4-stamp/ep_lz4-download-*.log [ 33%] No patch step for 'ep_lz4' [ 35%] No update step for 'ep_lz4' [ 37%] Performing configure step for 'ep_lz4' -- ep_lz4 configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_lz4-stamp/ep_lz4-configure-*.log [ 39%] Performing build step for 'ep_lz4' -- ep_lz4 build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_lz4-stamp/ep_lz4-build-*.log [ 41%] Performing install step for 'ep_lz4' -- ep_lz4 install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_lz4-stamp/ep_lz4-install-*.log [ 42%] Completed 'ep_lz4' [ 42%] Built target ep_lz4 Scanning dependencies of target ep_zstd [ 44%] Creating directories for 'ep_zstd' [ 46%] Performing download step (download, verify and extract) for 'ep_zstd' -- ep_zstd download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-download-*.log [ 48%] No patch step for 'ep_zstd' [ 50%] No update step for 'ep_zstd' [ 51%] Performing configure step for 'ep_zstd' -- ep_zstd configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-configure-*.log [ 53%] Performing build step for 'ep_zstd' -- ep_zstd build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-build-*.log [ 55%] Performing install step for 'ep_zstd' -- ep_zstd install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-install-*.log [ 57%] Completed 'ep_zstd' [ 57%] Built target ep_zstd Scanning dependencies of target ep_tbb [ 58%] Creating directories for 'ep_tbb' [ 60%] Performing download step (download, verify and extract) for 'ep_tbb' -- ep_tbb download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_tbb-stamp/ep_tbb-download-*.log [ 62%] No patch step for 'ep_tbb' [ 64%] No update step for 'ep_tbb' [ 66%] No configure step for 'ep_tbb' [ 67%] No build step for 'ep_tbb' [ 69%] No install step for 'ep_tbb' [ 71%] Completed 'ep_tbb' [ 71%] Built target ep_tbb Scanning dependencies of target ep_awssdk [ 73%] Creating directories for 'ep_awssdk' [ 75%] Performing download step (download, verify and extract) for 'ep_awssdk' -- ep_awssdk download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-download-*.log [ 76%] No patch step for 'ep_awssdk' [ 78%] No update step for 'ep_awssdk' [ 80%] Performing configure step for 'ep_awssdk' -- ep_awssdk configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-configure-*.log [ 82%] Performing build step for 'ep_awssdk' Command killed due to excessive memory consumption [rtd-command-info] start-time: 2020-03-25T22:32:11.860263Z, end-time: 2020-03-25T22:32:13.344232Z, duration: 1, exit-code: 0 git clone --no-single-branch --depth 50 https://github.com/TileDB-Inc/TileDB-Py.git . Cloning into '.'... [rtd-command-info] start-time: 2020-03-25T22:32:13.749738Z, end-time: 2020-03-25T22:32:14.058698Z, duration: 0, exit-code: 0 git checkout --force de2aff00b97498420199a9d16c8375df70e94780 Note: checking out 'de2aff00b97498420199a9d16c8375df70e94780'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at de2aff0 Add error check for libtiledb build validity in setup.py [rtd-command-info] start-time: 2020-03-25T22:32:14.217271Z, end-time: 2020-03-25T22:32:14.508948Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2020-03-25T22:32:15.909938Z, end-time: 2020-03-25T22:32:21.022475Z, duration: 5, exit-code: 0 python3.7 -mvirtualenv Using base prefix '/home/docs/.pyenv/versions/3.7.3' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2020-03-25T22:32:21.272682Z, end-time: 2020-03-25T22:32:22.226391Z, duration: 0, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip Requirement already up-to-date: pip in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (20.0.2) [rtd-command-info] start-time: 2020-03-25T22:32:22.389654Z, end-time: 2020-03-25T22:32:33.431998Z, duration: 11, exit-code: 0 python -m pip install --upgrade --no-cache-dir Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1 Collecting Pygments==2.3.1 Downloading Pygments-2.3.1-py2.py3-none-any.whl (849 kB) Collecting setuptools==41.0.1 Downloading setuptools-41.0.1-py2.py3-none-any.whl (575 kB) Collecting docutils==0.14 Downloading docutils-0.14-py3-none-any.whl (543 kB) Collecting mock==1.0.1 Downloading mock-1.0.1.tar.gz (818 kB) Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.5-py2.py3-none-any.whl (3.1 MB) Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) Collecting readthedocs-sphinx-ext<1.1 Downloading readthedocs_sphinx_ext-1.0.1-py2.py3-none-any.whl (14 kB) Collecting future Downloading future-0.18.2.tar.gz (829 kB) Collecting imagesize Downloading imagesize-1.2.0-py2.py3-none-any.whl (4.8 kB) Collecting Jinja2>=2.3 Downloading Jinja2-2.11.1-py2.py3-none-any.whl (126 kB) Collecting babel!=2.0,>=1.3 Downloading Babel-2.8.0-py2.py3-none-any.whl (8.6 MB) Collecting requests>=2.0.0 Downloading requests-2.23.0-py2.py3-none-any.whl (58 kB) Collecting packaging Downloading packaging-20.3-py2.py3-none-any.whl (37 kB) Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.0.0-py2.py3-none-any.whl (97 kB) Collecting sphinxcontrib-websupport Downloading sphinxcontrib_websupport-1.2.1-py2.py3-none-any.whl (39 kB) Collecting six>=1.5 Downloading six-1.14.0-py2.py3-none-any.whl (10 kB) Collecting MarkupSafe>=0.23 Downloading MarkupSafe-1.1.1-cp37-cp37m-manylinux1_x86_64.whl (27 kB) Collecting pytz>=2015.7 Downloading pytz-2019.3-py2.py3-none-any.whl (509 kB) Collecting chardet<4,>=3.0.2 Downloading chardet-3.0.4-py2.py3-none-any.whl (133 kB) Collecting urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 Downloading urllib3-1.25.8-py2.py3-none-any.whl (125 kB) Collecting certifi>=2017.4.17 Downloading certifi-2019.11.28-py2.py3-none-any.whl (156 kB) Collecting idna<3,>=2.5 Downloading idna-2.9-py2.py3-none-any.whl (58 kB) Collecting pyparsing>=2.0.2 Downloading pyparsing-2.4.6-py2.py3-none-any.whl (67 kB) Building wheels for collected packages: mock, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23754 sha256=e0998d1a5a74f7e5e79b9dadd2280095cbdb0d1efc6952993a3c22f8dc171fdc Stored in directory: /tmp/pip-ephem-wheel-cache-254aojzj/wheels/16/03/37/f0a64ab894c9102906f192db1a4071b7592292ad661563c69b Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491058 sha256=0c74c9c2057bb8cbda6a751dfbce5fd6a863b3a5045e6098207476eb2c73c2ae Stored in directory: /tmp/pip-ephem-wheel-cache-254aojzj/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0 Successfully built mock future Installing collected packages: Pygments, setuptools, docutils, mock, pillow, alabaster, future, commonmark, imagesize, MarkupSafe, Jinja2, pytz, babel, chardet, urllib3, certifi, idna, requests, six, pyparsing, packaging, snowballstemmer, sphinxcontrib-websupport, sphinx, recommonmark, sphinx-rtd-theme, readthedocs-sphinx-ext Attempting uninstall: setuptools Found existing installation: setuptools 46.1.3 Uninstalling setuptools-46.1.3: Successfully uninstalled setuptools-46.1.3 Successfully installed Jinja2-2.11.1 MarkupSafe-1.1.1 Pygments-2.3.1 alabaster-0.7.12 babel-2.8.0 certifi-2019.11.28 chardet-3.0.4 commonmark-0.8.1 docutils-0.14 future-0.18.2 idna-2.9 imagesize-1.2.0 mock-1.0.1 packaging-20.3 pillow-5.4.1 pyparsing-2.4.6 pytz-2019.3 readthedocs-sphinx-ext-1.0.1 recommonmark-0.5.0 requests-2.23.0 setuptools-41.0.1 six-1.14.0 snowballstemmer-2.0.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-websupport-1.2.1 urllib3-1.25.8 [rtd-command-info] start-time: 2020-03-25T22:32:33.586640Z, end-time: 2020-03-25T22:32:45.552144Z, duration: 11, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r requirements.txt Collecting cmake>=3.11.0 Downloading cmake-3.16.3-py3-none-manylinux2010_x86_64.whl (17.0 MB) Collecting cython>=0.29 Downloading Cython-0.29.16-cp37-cp37m-manylinux1_x86_64.whl (2.1 MB) Collecting numpy==1.16.* Downloading numpy-1.16.6-cp37-cp37m-manylinux1_x86_64.whl (17.3 MB) Requirement already satisfied: setuptools>=18.0.1 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 4)) (41.0.1) Collecting setuptools-scm>=1.5.4 Downloading setuptools_scm-3.5.0-py2.py3-none-any.whl (26 kB) Requirement already satisfied: wheel>=0.30 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 6)) (0.34.2) Collecting psutil Downloading psutil-5.7.0.tar.gz (449 kB) Building wheels for collected packages: psutil Building wheel for psutil (setup.py): started Building wheel for psutil (setup.py): finished with status 'done' Created wheel for psutil: filename=psutil-5.7.0-cp37-cp37m-linux_x86_64.whl size=276462 sha256=6b4b7ffdc68be2488a4748b5edef28abc322e01df0ad3a41c1cba99eb779e198 Stored in directory: /tmp/pip-ephem-wheel-cache-tqvgdms0/wheels/b6/e7/50/aee9cc966163d74430f13f208171dee22f11efa4a4a826661c Successfully built psutil Installing collected packages: cmake, cython, numpy, setuptools-scm, psutil Successfully installed cmake-3.16.3 cython-0.29.16 numpy-1.16.6 psutil-5.7.0 setuptools-scm-3.5.0 [rtd-command-info] start-time: 2020-03-25T22:32:45.705486Z, end-time: 2020-03-25T23:32:19.305287Z, duration: 3573, exit-code: 137 python ./setup.py install --force libtiledb_exists checking 'library_dirs': [] libtiledb_exists found: 'None' running install running bdist_egg GNU Make 4.1 Built for x86_64-pc-linux-gnu Copyright (C) 1988-2014 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. -- The C compiler identification is GNU 7.4.0 -- The CXX compiler identification is GNU 7.4.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Starting TileDB superbuild. -- Found Bzip2: /usr/lib/x86_64-linux-gnu/libbz2.so -- Could NOT find LZ4 (missing: LZ4_LIBRARIES LZ4_INCLUDE_DIR) -- Adding LZ4 as an external project -- Could NOT find Spdlog (missing: SPDLOG_INCLUDE_DIR) -- Adding Spdlog as an external project -- Found Zlib: /usr/lib/x86_64-linux-gnu/libz.so -- Could NOT find Zstd (missing: ZSTD_LIBRARIES ZSTD_INCLUDE_DIR) -- Adding Zstd as an external project -- Found OpenSSL: /usr/lib/x86_64-linux-gnu/libssl.so -- OpenSSL crypto: /usr/lib/x86_64-linux-gnu/libcrypto.so -- root: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/install;/usr/local/opt/openssl -- Could NOT find CURL (missing: CURL_LIBRARY CURL_INCLUDE_DIR) -- Could NOT find Curl (missing: CURL_LIBRARIES CURL_INCLUDE_DIR) -- Adding Curl as an external project CMake Warning at cmake/Modules/FindCurl_EP.cmake:106 (message): TileDB FindOpenSSL_EP did not set TILEDB_OPENSSL_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) CMake Warning at cmake/Modules/FindCurl_EP.cmake:118 (message): TileDB FindZlib_EP did not set TILEDB_ZLIB_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) -- Could NOT find AWSSDK -- Adding AWSSDK as an external project -- Could NOT find TBB (missing: TBB_LIBRARIES TBB_INCLUDE_DIR) -- Adding TBB as an external project -- Not found clang-tidy -- Not found clang-format -- Found Doxygen: /usr/bin/doxygen (found version "1.8.13") found components: doxygen dot -- Install prefix is /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/dist -- Configuring done -- Generating done -- Build files have been written to: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build Scanning dependencies of target ep_spdlog [ 1%] Creating directories for 'ep_spdlog' [ 3%] Performing download step (download, verify and extract) for 'ep_spdlog' -- ep_spdlog download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_spdlog-stamp/ep_spdlog-download-*.log [ 5%] No patch step for 'ep_spdlog' [ 7%] No update step for 'ep_spdlog' [ 8%] No configure step for 'ep_spdlog' [ 10%] No build step for 'ep_spdlog' [ 12%] No install step for 'ep_spdlog' [ 14%] Completed 'ep_spdlog' [ 14%] Built target ep_spdlog Scanning dependencies of target ep_curl [ 16%] Creating directories for 'ep_curl' [ 17%] Performing download step (download, verify and extract) for 'ep_curl' -- ep_curl download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-download-*.log [ 19%] No patch step for 'ep_curl' [ 21%] No update step for 'ep_curl' [ 23%] Performing configure step for 'ep_curl' -- ep_curl configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-configure-*.log [ 25%] Performing build step for 'ep_curl' -- ep_curl build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-build-*.log [ 26%] Performing install step for 'ep_curl' -- ep_curl install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-install-*.log [ 28%] Completed 'ep_curl' [ 28%] Built target ep_curl Scanning dependencies of target ep_lz4 [ 30%] Creating directories for 'ep_lz4' [ 32%] Performing download step (download, verify and extract) for 'ep_lz4' -- ep_lz4 download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_lz4-stamp/ep_lz4-download-*.log [ 33%] No patch step for 'ep_lz4' [ 35%] No update step for 'ep_lz4' [ 37%] Performing configure step for 'ep_lz4' -- ep_lz4 configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_lz4-stamp/ep_lz4-configure-*.log [ 39%] Performing build step for 'ep_lz4' -- ep_lz4 build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_lz4-stamp/ep_lz4-build-*.log [ 41%] Performing install step for 'ep_lz4' -- ep_lz4 install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_lz4-stamp/ep_lz4-install-*.log [ 42%] Completed 'ep_lz4' [ 42%] Built target ep_lz4 Scanning dependencies of target ep_zstd [ 44%] Creating directories for 'ep_zstd' [ 46%] Performing download step (download, verify and extract) for 'ep_zstd' -- ep_zstd download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-download-*.log [ 48%] No patch step for 'ep_zstd' [ 50%] No update step for 'ep_zstd' [ 51%] Performing configure step for 'ep_zstd' -- ep_zstd configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-configure-*.log [ 53%] Performing build step for 'ep_zstd' -- ep_zstd build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-build-*.log [ 55%] Performing install step for 'ep_zstd' -- ep_zstd install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-install-*.log [ 57%] Completed 'ep_zstd' [ 57%] Built target ep_zstd Scanning dependencies of target ep_tbb [ 58%] Creating directories for 'ep_tbb' [ 60%] Performing download step (download, verify and extract) for 'ep_tbb' -- ep_tbb download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_tbb-stamp/ep_tbb-download-*.log [ 62%] No patch step for 'ep_tbb' [ 64%] No update step for 'ep_tbb' [ 66%] No configure step for 'ep_tbb' [ 67%] No build step for 'ep_tbb' [ 69%] No install step for 'ep_tbb' [ 71%] Completed 'ep_tbb' [ 71%] Built target ep_tbb Scanning dependencies of target ep_awssdk [ 73%] Creating directories for 'ep_awssdk' [ 75%] Performing download step (download, verify and extract) for 'ep_awssdk' -- ep_awssdk download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-download-*.log [ 76%] No patch step for 'ep_awssdk' [ 78%] No update step for 'ep_awssdk' [ 80%] Performing configure step for 'ep_awssdk' -- ep_awssdk configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-configure-*.log [ 82%] Performing build step for 'ep_awssdk' Command killed due to excessive memory consumption [rtd-command-info] start-time: 2020-03-25T23:32:12.875910Z, end-time: 2020-03-25T23:32:14.413342Z, duration: 1, exit-code: 0 git clone --no-single-branch --depth 50 https://github.com/TileDB-Inc/TileDB-Py.git . Cloning into '.'... [rtd-command-info] start-time: 2020-03-25T23:32:14.858701Z, end-time: 2020-03-25T23:32:15.188543Z, duration: 0, exit-code: 0 git checkout --force de2aff00b97498420199a9d16c8375df70e94780 Note: checking out 'de2aff00b97498420199a9d16c8375df70e94780'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at de2aff0 Add error check for libtiledb build validity in setup.py [rtd-command-info] start-time: 2020-03-25T23:32:15.347445Z, end-time: 2020-03-25T23:32:15.671577Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2020-03-25T23:32:17.134425Z, end-time: 2020-03-25T23:32:21.952365Z, duration: 4, exit-code: 0 python3.7 -mvirtualenv Using base prefix '/home/docs/.pyenv/versions/3.7.3' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2020-03-25T23:32:22.762956Z, end-time: 2020-03-25T23:32:23.788198Z, duration: 1, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip Requirement already up-to-date: pip in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (20.0.2) [rtd-command-info] start-time: 2020-03-25T23:32:23.950589Z, end-time: 2020-03-25T23:32:36.559103Z, duration: 12, exit-code: 0 python -m pip install --upgrade --no-cache-dir Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1 Collecting Pygments==2.3.1 Downloading Pygments-2.3.1-py2.py3-none-any.whl (849 kB) Collecting setuptools==41.0.1 Downloading setuptools-41.0.1-py2.py3-none-any.whl (575 kB) Collecting docutils==0.14 Downloading docutils-0.14-py3-none-any.whl (543 kB) Collecting mock==1.0.1 Downloading mock-1.0.1.tar.gz (818 kB) Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.5-py2.py3-none-any.whl (3.1 MB) Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) Collecting readthedocs-sphinx-ext<1.1 Downloading readthedocs_sphinx_ext-1.0.1-py2.py3-none-any.whl (14 kB) Collecting future Downloading future-0.18.2.tar.gz (829 kB) Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.0.0-py2.py3-none-any.whl (97 kB) Collecting sphinxcontrib-websupport Downloading sphinxcontrib_websupport-1.2.1-py2.py3-none-any.whl (39 kB) Collecting babel!=2.0,>=1.3 Downloading Babel-2.8.0-py2.py3-none-any.whl (8.6 MB) Collecting Jinja2>=2.3 Downloading Jinja2-2.11.1-py2.py3-none-any.whl (126 kB) Collecting requests>=2.0.0 Downloading requests-2.23.0-py2.py3-none-any.whl (58 kB) Collecting imagesize Downloading imagesize-1.2.0-py2.py3-none-any.whl (4.8 kB) Collecting packaging Downloading packaging-20.3-py2.py3-none-any.whl (37 kB) Collecting six>=1.5 Downloading six-1.14.0-py2.py3-none-any.whl (10 kB) Collecting pytz>=2015.7 Downloading pytz-2019.3-py2.py3-none-any.whl (509 kB) Collecting MarkupSafe>=0.23 Downloading MarkupSafe-1.1.1-cp37-cp37m-manylinux1_x86_64.whl (27 kB) Collecting idna<3,>=2.5 Downloading idna-2.9-py2.py3-none-any.whl (58 kB) Collecting chardet<4,>=3.0.2 Downloading chardet-3.0.4-py2.py3-none-any.whl (133 kB) Collecting urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 Downloading urllib3-1.25.8-py2.py3-none-any.whl (125 kB) Collecting certifi>=2017.4.17 Downloading certifi-2019.11.28-py2.py3-none-any.whl (156 kB) Collecting pyparsing>=2.0.2 Downloading pyparsing-2.4.6-py2.py3-none-any.whl (67 kB) Building wheels for collected packages: mock, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23754 sha256=bfa2d98c42bfdeb1ca57505efcbd5164cb5db9d4dc7019522f64a08f06df5c73 Stored in directory: /tmp/pip-ephem-wheel-cache-573aj5nt/wheels/16/03/37/f0a64ab894c9102906f192db1a4071b7592292ad661563c69b Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491058 sha256=f76ba24e48869fd63d0114a84750bd16597778b8f96a9865b9b5944cac5b0cb1 Stored in directory: /tmp/pip-ephem-wheel-cache-573aj5nt/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0 Successfully built mock future Installing collected packages: Pygments, setuptools, docutils, mock, pillow, alabaster, future, commonmark, snowballstemmer, sphinxcontrib-websupport, pytz, babel, MarkupSafe, Jinja2, idna, chardet, urllib3, certifi, requests, imagesize, pyparsing, six, packaging, sphinx, recommonmark, sphinx-rtd-theme, readthedocs-sphinx-ext Attempting uninstall: setuptools Found existing installation: setuptools 46.1.3 Uninstalling setuptools-46.1.3: Successfully uninstalled setuptools-46.1.3 Successfully installed Jinja2-2.11.1 MarkupSafe-1.1.1 Pygments-2.3.1 alabaster-0.7.12 babel-2.8.0 certifi-2019.11.28 chardet-3.0.4 commonmark-0.8.1 docutils-0.14 future-0.18.2 idna-2.9 imagesize-1.2.0 mock-1.0.1 packaging-20.3 pillow-5.4.1 pyparsing-2.4.6 pytz-2019.3 readthedocs-sphinx-ext-1.0.1 recommonmark-0.5.0 requests-2.23.0 setuptools-41.0.1 six-1.14.0 snowballstemmer-2.0.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-websupport-1.2.1 urllib3-1.25.8 [rtd-command-info] start-time: 2020-03-25T23:32:36.851464Z, end-time: 2020-03-25T23:32:48.480803Z, duration: 11, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r requirements.txt Collecting cmake>=3.11.0 Downloading cmake-3.16.3-py3-none-manylinux2010_x86_64.whl (17.0 MB) Collecting cython>=0.29 Downloading Cython-0.29.16-cp37-cp37m-manylinux1_x86_64.whl (2.1 MB) Collecting numpy==1.16.* Downloading numpy-1.16.6-cp37-cp37m-manylinux1_x86_64.whl (17.3 MB) Requirement already satisfied: setuptools>=18.0.1 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 4)) (41.0.1) Collecting setuptools-scm>=1.5.4 Downloading setuptools_scm-3.5.0-py2.py3-none-any.whl (26 kB) Requirement already satisfied: wheel>=0.30 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 6)) (0.34.2) Collecting psutil Downloading psutil-5.7.0.tar.gz (449 kB) Building wheels for collected packages: psutil Building wheel for psutil (setup.py): started Building wheel for psutil (setup.py): finished with status 'done' Created wheel for psutil: filename=psutil-5.7.0-cp37-cp37m-linux_x86_64.whl size=276465 sha256=93308d038fc909b4cd691d125117d85985537fde50ac29baf842a43952fc1c71 Stored in directory: /tmp/pip-ephem-wheel-cache-dcc5dl9n/wheels/b6/e7/50/aee9cc966163d74430f13f208171dee22f11efa4a4a826661c Successfully built psutil Installing collected packages: cmake, cython, numpy, setuptools-scm, psutil Successfully installed cmake-3.16.3 cython-0.29.16 numpy-1.16.6 psutil-5.7.0 setuptools-scm-3.5.0 [rtd-command-info] start-time: 2020-03-25T23:32:48.679624Z, end-time: 2020-03-26T00:32:18.912653Z, duration: 3570, exit-code: 137 python ./setup.py install --force libtiledb_exists checking 'library_dirs': [] libtiledb_exists found: 'None' running install running bdist_egg GNU Make 4.1 Built for x86_64-pc-linux-gnu Copyright (C) 1988-2014 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. -- The C compiler identification is GNU 7.4.0 -- The CXX compiler identification is GNU 7.4.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Starting TileDB superbuild. -- Found Bzip2: /usr/lib/x86_64-linux-gnu/libbz2.so -- Could NOT find LZ4 (missing: LZ4_LIBRARIES LZ4_INCLUDE_DIR) -- Adding LZ4 as an external project -- Could NOT find Spdlog (missing: SPDLOG_INCLUDE_DIR) -- Adding Spdlog as an external project -- Found Zlib: /usr/lib/x86_64-linux-gnu/libz.so -- Could NOT find Zstd (missing: ZSTD_LIBRARIES ZSTD_INCLUDE_DIR) -- Adding Zstd as an external project -- Found OpenSSL: /usr/lib/x86_64-linux-gnu/libssl.so -- OpenSSL crypto: /usr/lib/x86_64-linux-gnu/libcrypto.so -- root: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/install;/usr/local/opt/openssl -- Could NOT find CURL (missing: CURL_LIBRARY CURL_INCLUDE_DIR) -- Could NOT find Curl (missing: CURL_LIBRARIES CURL_INCLUDE_DIR) -- Adding Curl as an external project CMake Warning at cmake/Modules/FindCurl_EP.cmake:106 (message): TileDB FindOpenSSL_EP did not set TILEDB_OPENSSL_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) CMake Warning at cmake/Modules/FindCurl_EP.cmake:118 (message): TileDB FindZlib_EP did not set TILEDB_ZLIB_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) -- Could NOT find AWSSDK -- Adding AWSSDK as an external project -- Could NOT find TBB (missing: TBB_LIBRARIES TBB_INCLUDE_DIR) -- Adding TBB as an external project -- Not found clang-tidy -- Not found clang-format -- Found Doxygen: /usr/bin/doxygen (found version "1.8.13") found components: doxygen dot -- Install prefix is /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/dist -- Configuring done -- Generating done -- Build files have been written to: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build Scanning dependencies of target ep_curl [ 1%] Creating directories for 'ep_curl' [ 3%] Performing download step (download, verify and extract) for 'ep_curl' -- ep_curl download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-download-*.log [ 5%] No patch step for 'ep_curl' [ 7%] No update step for 'ep_curl' [ 8%] Performing configure step for 'ep_curl' -- ep_curl configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-configure-*.log [ 10%] Performing build step for 'ep_curl' -- ep_curl build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-build-*.log [ 12%] Performing install step for 'ep_curl' -- ep_curl install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-install-*.log [ 14%] Completed 'ep_curl' [ 14%] Built target ep_curl Scanning dependencies of target ep_awssdk [ 16%] Creating directories for 'ep_awssdk' [ 17%] Performing download step (download, verify and extract) for 'ep_awssdk' -- ep_awssdk download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-download-*.log [ 19%] No patch step for 'ep_awssdk' [ 21%] No update step for 'ep_awssdk' [ 23%] Performing configure step for 'ep_awssdk' -- ep_awssdk configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-configure-*.log [ 25%] Performing build step for 'ep_awssdk' Command killed due to excessive memory consumption [rtd-command-info] start-time: 2020-03-26T00:32:12.671746Z, end-time: 2020-03-26T00:32:14.280254Z, duration: 1, exit-code: 0 git clone --no-single-branch --depth 50 https://github.com/TileDB-Inc/TileDB-Py.git . Cloning into '.'... [rtd-command-info] start-time: 2020-03-26T00:32:15.012537Z, end-time: 2020-03-26T00:32:15.343002Z, duration: 0, exit-code: 0 git checkout --force de2aff00b97498420199a9d16c8375df70e94780 Note: checking out 'de2aff00b97498420199a9d16c8375df70e94780'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at de2aff0 Add error check for libtiledb build validity in setup.py [rtd-command-info] start-time: 2020-03-26T00:32:15.503111Z, end-time: 2020-03-26T00:32:15.826705Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2020-03-26T00:32:17.236884Z, end-time: 2020-03-26T00:32:22.116973Z, duration: 4, exit-code: 0 python3.7 -mvirtualenv Using base prefix '/home/docs/.pyenv/versions/3.7.3' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2020-03-26T00:32:22.275680Z, end-time: 2020-03-26T00:32:23.302320Z, duration: 1, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip Requirement already up-to-date: pip in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (20.0.2) [rtd-command-info] start-time: 2020-03-26T00:32:23.456247Z, end-time: 2020-03-26T00:32:35.186218Z, duration: 11, exit-code: 0 python -m pip install --upgrade --no-cache-dir Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1 Collecting Pygments==2.3.1 Downloading Pygments-2.3.1-py2.py3-none-any.whl (849 kB) Collecting setuptools==41.0.1 Downloading setuptools-41.0.1-py2.py3-none-any.whl (575 kB) Collecting docutils==0.14 Downloading docutils-0.14-py3-none-any.whl (543 kB) Collecting mock==1.0.1 Downloading mock-1.0.1.tar.gz (818 kB) Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.5-py2.py3-none-any.whl (3.1 MB) Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) Collecting readthedocs-sphinx-ext<1.1 Downloading readthedocs_sphinx_ext-1.0.1-py2.py3-none-any.whl (14 kB) Collecting future Downloading future-0.18.2.tar.gz (829 kB) Collecting packaging Downloading packaging-20.3-py2.py3-none-any.whl (37 kB) Collecting requests>=2.0.0 Downloading requests-2.23.0-py2.py3-none-any.whl (58 kB) Collecting six>=1.5 Downloading six-1.14.0-py2.py3-none-any.whl (10 kB) Collecting babel!=2.0,>=1.3 Downloading Babel-2.8.0-py2.py3-none-any.whl (8.6 MB) Collecting Jinja2>=2.3 Downloading Jinja2-2.11.1-py2.py3-none-any.whl (126 kB) Collecting imagesize Downloading imagesize-1.2.0-py2.py3-none-any.whl (4.8 kB) Collecting sphinxcontrib-websupport Downloading sphinxcontrib_websupport-1.2.1-py2.py3-none-any.whl (39 kB) Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.0.0-py2.py3-none-any.whl (97 kB) Collecting pyparsing>=2.0.2 Downloading pyparsing-2.4.6-py2.py3-none-any.whl (67 kB) Collecting urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 Downloading urllib3-1.25.8-py2.py3-none-any.whl (125 kB) Collecting chardet<4,>=3.0.2 Downloading chardet-3.0.4-py2.py3-none-any.whl (133 kB) Collecting certifi>=2017.4.17 Downloading certifi-2019.11.28-py2.py3-none-any.whl (156 kB) Collecting idna<3,>=2.5 Downloading idna-2.9-py2.py3-none-any.whl (58 kB) Collecting pytz>=2015.7 Downloading pytz-2019.3-py2.py3-none-any.whl (509 kB) Collecting MarkupSafe>=0.23 Downloading MarkupSafe-1.1.1-cp37-cp37m-manylinux1_x86_64.whl (27 kB) Building wheels for collected packages: mock, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23754 sha256=f90bb8cb2c8da441ee82c3061c7bf0f304caa4d94abef9a8705c6e1dcca4dbfb Stored in directory: /tmp/pip-ephem-wheel-cache-0kko05qp/wheels/16/03/37/f0a64ab894c9102906f192db1a4071b7592292ad661563c69b Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491058 sha256=ed5cedb6aedf5a03a0ddf5a254f4a9675d86d23ac1c43d99b2865e604de3996c Stored in directory: /tmp/pip-ephem-wheel-cache-0kko05qp/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0 Successfully built mock future Installing collected packages: Pygments, setuptools, docutils, mock, pillow, alabaster, future, commonmark, six, pyparsing, packaging, urllib3, chardet, certifi, idna, requests, pytz, babel, MarkupSafe, Jinja2, imagesize, sphinxcontrib-websupport, snowballstemmer, sphinx, recommonmark, sphinx-rtd-theme, readthedocs-sphinx-ext Attempting uninstall: setuptools Found existing installation: setuptools 46.1.3 Uninstalling setuptools-46.1.3: Successfully uninstalled setuptools-46.1.3 Successfully installed Jinja2-2.11.1 MarkupSafe-1.1.1 Pygments-2.3.1 alabaster-0.7.12 babel-2.8.0 certifi-2019.11.28 chardet-3.0.4 commonmark-0.8.1 docutils-0.14 future-0.18.2 idna-2.9 imagesize-1.2.0 mock-1.0.1 packaging-20.3 pillow-5.4.1 pyparsing-2.4.6 pytz-2019.3 readthedocs-sphinx-ext-1.0.1 recommonmark-0.5.0 requests-2.23.0 setuptools-41.0.1 six-1.14.0 snowballstemmer-2.0.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-websupport-1.2.1 urllib3-1.25.8 [rtd-command-info] start-time: 2020-03-26T00:32:35.357906Z, end-time: 2020-03-26T00:32:47.420371Z, duration: 12, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r requirements.txt Collecting cmake>=3.11.0 Downloading cmake-3.16.3-py3-none-manylinux2010_x86_64.whl (17.0 MB) Collecting cython>=0.29 Downloading Cython-0.29.16-cp37-cp37m-manylinux1_x86_64.whl (2.1 MB) Collecting numpy==1.16.* Downloading numpy-1.16.6-cp37-cp37m-manylinux1_x86_64.whl (17.3 MB) Requirement already satisfied: setuptools>=18.0.1 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 4)) (41.0.1) Collecting setuptools-scm>=1.5.4 Downloading setuptools_scm-3.5.0-py2.py3-none-any.whl (26 kB) Requirement already satisfied: wheel>=0.30 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 6)) (0.34.2) Collecting psutil Downloading psutil-5.7.0.tar.gz (449 kB) Building wheels for collected packages: psutil Building wheel for psutil (setup.py): started Building wheel for psutil (setup.py): finished with status 'done' Created wheel for psutil: filename=psutil-5.7.0-cp37-cp37m-linux_x86_64.whl size=276465 sha256=5af77baa1f63d383f0d819477dec6a19e1739753ce52d3de9fa8bb462e79159f Stored in directory: /tmp/pip-ephem-wheel-cache-agw1f60h/wheels/b6/e7/50/aee9cc966163d74430f13f208171dee22f11efa4a4a826661c Successfully built psutil Installing collected packages: cmake, cython, numpy, setuptools-scm, psutil Successfully installed cmake-3.16.3 cython-0.29.16 numpy-1.16.6 psutil-5.7.0 setuptools-scm-3.5.0 [rtd-command-info] start-time: 2020-03-26T00:32:47.574884Z, end-time: 2020-03-26T01:32:19.373705Z, duration: 3571, exit-code: 137 python ./setup.py install --force libtiledb_exists checking 'library_dirs': [] libtiledb_exists found: 'None' running install running bdist_egg GNU Make 4.1 Built for x86_64-pc-linux-gnu Copyright (C) 1988-2014 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. -- The C compiler identification is GNU 7.4.0 -- The CXX compiler identification is GNU 7.4.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Starting TileDB superbuild. -- Found Bzip2: /usr/lib/x86_64-linux-gnu/libbz2.so -- Could NOT find LZ4 (missing: LZ4_LIBRARIES LZ4_INCLUDE_DIR) -- Adding LZ4 as an external project -- Could NOT find Spdlog (missing: SPDLOG_INCLUDE_DIR) -- Adding Spdlog as an external project -- Found Zlib: /usr/lib/x86_64-linux-gnu/libz.so -- Could NOT find Zstd (missing: ZSTD_LIBRARIES ZSTD_INCLUDE_DIR) -- Adding Zstd as an external project -- Found OpenSSL: /usr/lib/x86_64-linux-gnu/libssl.so -- OpenSSL crypto: /usr/lib/x86_64-linux-gnu/libcrypto.so -- root: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/install;/usr/local/opt/openssl -- Could NOT find CURL (missing: CURL_LIBRARY CURL_INCLUDE_DIR) -- Could NOT find Curl (missing: CURL_LIBRARIES CURL_INCLUDE_DIR) -- Adding Curl as an external project CMake Warning at cmake/Modules/FindCurl_EP.cmake:106 (message): TileDB FindOpenSSL_EP did not set TILEDB_OPENSSL_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) CMake Warning at cmake/Modules/FindCurl_EP.cmake:118 (message): TileDB FindZlib_EP did not set TILEDB_ZLIB_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) -- Could NOT find AWSSDK -- Adding AWSSDK as an external project -- Could NOT find TBB (missing: TBB_LIBRARIES TBB_INCLUDE_DIR) -- Adding TBB as an external project -- Not found clang-tidy -- Not found clang-format -- Found Doxygen: /usr/bin/doxygen (found version "1.8.13") found components: doxygen dot -- Install prefix is /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/dist -- Configuring done -- Generating done -- Build files have been written to: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build Scanning dependencies of target ep_spdlog [ 1%] Creating directories for 'ep_spdlog' [ 3%] Performing download step (download, verify and extract) for 'ep_spdlog' -- ep_spdlog download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_spdlog-stamp/ep_spdlog-download-*.log [ 5%] No patch step for 'ep_spdlog' [ 7%] No update step for 'ep_spdlog' [ 8%] No configure step for 'ep_spdlog' [ 10%] No build step for 'ep_spdlog' [ 12%] No install step for 'ep_spdlog' [ 14%] Completed 'ep_spdlog' [ 14%] Built target ep_spdlog Scanning dependencies of target ep_curl [ 16%] Creating directories for 'ep_curl' [ 17%] Performing download step (download, verify and extract) for 'ep_curl' -- ep_curl download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-download-*.log [ 19%] No patch step for 'ep_curl' [ 21%] No update step for 'ep_curl' [ 23%] Performing configure step for 'ep_curl' -- ep_curl configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-configure-*.log [ 25%] Performing build step for 'ep_curl' -- ep_curl build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-build-*.log [ 26%] Performing install step for 'ep_curl' -- ep_curl install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-install-*.log [ 28%] Completed 'ep_curl' [ 28%] Built target ep_curl Scanning dependencies of target ep_lz4 [ 30%] Creating directories for 'ep_lz4' [ 32%] Performing download step (download, verify and extract) for 'ep_lz4' -- ep_lz4 download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_lz4-stamp/ep_lz4-download-*.log [ 33%] No patch step for 'ep_lz4' [ 35%] No update step for 'ep_lz4' [ 37%] Performing configure step for 'ep_lz4' -- ep_lz4 configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_lz4-stamp/ep_lz4-configure-*.log [ 39%] Performing build step for 'ep_lz4' -- ep_lz4 build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_lz4-stamp/ep_lz4-build-*.log [ 41%] Performing install step for 'ep_lz4' -- ep_lz4 install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_lz4-stamp/ep_lz4-install-*.log [ 42%] Completed 'ep_lz4' [ 42%] Built target ep_lz4 Scanning dependencies of target ep_zstd [ 44%] Creating directories for 'ep_zstd' [ 46%] Performing download step (download, verify and extract) for 'ep_zstd' -- ep_zstd download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-download-*.log [ 48%] No patch step for 'ep_zstd' [ 50%] No update step for 'ep_zstd' [ 51%] Performing configure step for 'ep_zstd' -- ep_zstd configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-configure-*.log [ 53%] Performing build step for 'ep_zstd' -- ep_zstd build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-build-*.log [ 55%] Performing install step for 'ep_zstd' -- ep_zstd install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-install-*.log [ 57%] Completed 'ep_zstd' [ 57%] Built target ep_zstd Scanning dependencies of target ep_tbb [ 58%] Creating directories for 'ep_tbb' [ 60%] Performing download step (download, verify and extract) for 'ep_tbb' -- ep_tbb download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_tbb-stamp/ep_tbb-download-*.log [ 62%] No patch step for 'ep_tbb' [ 64%] No update step for 'ep_tbb' [ 66%] No configure step for 'ep_tbb' [ 67%] No build step for 'ep_tbb' [ 69%] No install step for 'ep_tbb' [ 71%] Completed 'ep_tbb' [ 71%] Built target ep_tbb Scanning dependencies of target ep_awssdk [ 73%] Creating directories for 'ep_awssdk' [ 75%] Performing download step (download, verify and extract) for 'ep_awssdk' -- ep_awssdk download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-download-*.log [ 76%] No patch step for 'ep_awssdk' [ 78%] No update step for 'ep_awssdk' [ 80%] Performing configure step for 'ep_awssdk' -- ep_awssdk configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-configure-*.log [ 82%] Performing build step for 'ep_awssdk' Command killed due to excessive memory consumption [rtd-command-info] start-time: 2020-03-26T01:32:12.962942Z, end-time: 2020-03-26T01:32:14.184407Z, duration: 1, exit-code: 0 git clone --no-single-branch --depth 50 https://github.com/TileDB-Inc/TileDB-Py.git . Cloning into '.'... [rtd-command-info] start-time: 2020-03-26T01:32:14.665950Z, end-time: 2020-03-26T01:32:14.995714Z, duration: 0, exit-code: 0 git checkout --force de2aff00b97498420199a9d16c8375df70e94780 Note: checking out 'de2aff00b97498420199a9d16c8375df70e94780'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at de2aff0 Add error check for libtiledb build validity in setup.py [rtd-command-info] start-time: 2020-03-26T01:32:15.215242Z, end-time: 2020-03-26T01:32:15.527118Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2020-03-26T01:32:16.950863Z, end-time: 2020-03-26T01:32:21.583550Z, duration: 4, exit-code: 0 python3.7 -mvirtualenv Using base prefix '/home/docs/.pyenv/versions/3.7.3' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2020-03-26T01:32:21.744663Z, end-time: 2020-03-26T01:32:22.732465Z, duration: 0, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip Requirement already up-to-date: pip in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (20.0.2) [rtd-command-info] start-time: 2020-03-26T01:32:22.889476Z, end-time: 2020-03-26T01:32:34.814340Z, duration: 11, exit-code: 0 python -m pip install --upgrade --no-cache-dir Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1 Collecting Pygments==2.3.1 Downloading Pygments-2.3.1-py2.py3-none-any.whl (849 kB) Collecting setuptools==41.0.1 Downloading setuptools-41.0.1-py2.py3-none-any.whl (575 kB) Collecting docutils==0.14 Downloading docutils-0.14-py3-none-any.whl (543 kB) Collecting mock==1.0.1 Downloading mock-1.0.1.tar.gz (818 kB) Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.5-py2.py3-none-any.whl (3.1 MB) Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) Collecting readthedocs-sphinx-ext<1.1 Downloading readthedocs_sphinx_ext-1.0.1-py2.py3-none-any.whl (14 kB) Collecting future Downloading future-0.18.2.tar.gz (829 kB) Collecting six>=1.5 Downloading six-1.14.0-py2.py3-none-any.whl (10 kB) Collecting babel!=2.0,>=1.3 Downloading Babel-2.8.0-py2.py3-none-any.whl (8.6 MB) Collecting sphinxcontrib-websupport Downloading sphinxcontrib_websupport-1.2.1-py2.py3-none-any.whl (39 kB) Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.0.0-py2.py3-none-any.whl (97 kB) Collecting Jinja2>=2.3 Downloading Jinja2-2.11.1-py2.py3-none-any.whl (126 kB) Collecting requests>=2.0.0 Downloading requests-2.23.0-py2.py3-none-any.whl (58 kB) Collecting packaging Downloading packaging-20.3-py2.py3-none-any.whl (37 kB) Collecting imagesize Downloading imagesize-1.2.0-py2.py3-none-any.whl (4.8 kB) Collecting pytz>=2015.7 Downloading pytz-2019.3-py2.py3-none-any.whl (509 kB) Collecting MarkupSafe>=0.23 Downloading MarkupSafe-1.1.1-cp37-cp37m-manylinux1_x86_64.whl (27 kB) Collecting urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 Downloading urllib3-1.25.8-py2.py3-none-any.whl (125 kB) Collecting idna<3,>=2.5 Downloading idna-2.9-py2.py3-none-any.whl (58 kB) Collecting certifi>=2017.4.17 Downloading certifi-2019.11.28-py2.py3-none-any.whl (156 kB) Collecting chardet<4,>=3.0.2 Downloading chardet-3.0.4-py2.py3-none-any.whl (133 kB) Collecting pyparsing>=2.0.2 Downloading pyparsing-2.4.6-py2.py3-none-any.whl (67 kB) Building wheels for collected packages: mock, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23754 sha256=1f3ad332f9eb639b5efe4ceface2549a30e9b275a923c30a84beb5d797cac1ea Stored in directory: /tmp/pip-ephem-wheel-cache-z1ip5jjd/wheels/16/03/37/f0a64ab894c9102906f192db1a4071b7592292ad661563c69b Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491058 sha256=52465324341168b338f05b8c628761255ff1d36e26cc17b80acfeb450ec66fca Stored in directory: /tmp/pip-ephem-wheel-cache-z1ip5jjd/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0 Successfully built mock future Installing collected packages: Pygments, setuptools, docutils, mock, pillow, alabaster, future, commonmark, six, pytz, babel, sphinxcontrib-websupport, snowballstemmer, MarkupSafe, Jinja2, urllib3, idna, certifi, chardet, requests, pyparsing, packaging, imagesize, sphinx, recommonmark, sphinx-rtd-theme, readthedocs-sphinx-ext Attempting uninstall: setuptools Found existing installation: setuptools 46.1.3 Uninstalling setuptools-46.1.3: Successfully uninstalled setuptools-46.1.3 Successfully installed Jinja2-2.11.1 MarkupSafe-1.1.1 Pygments-2.3.1 alabaster-0.7.12 babel-2.8.0 certifi-2019.11.28 chardet-3.0.4 commonmark-0.8.1 docutils-0.14 future-0.18.2 idna-2.9 imagesize-1.2.0 mock-1.0.1 packaging-20.3 pillow-5.4.1 pyparsing-2.4.6 pytz-2019.3 readthedocs-sphinx-ext-1.0.1 recommonmark-0.5.0 requests-2.23.0 setuptools-41.0.1 six-1.14.0 snowballstemmer-2.0.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-websupport-1.2.1 urllib3-1.25.8 [rtd-command-info] start-time: 2020-03-26T01:32:34.998566Z, end-time: 2020-03-26T01:32:46.987353Z, duration: 11, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r requirements.txt Collecting cmake>=3.11.0 Downloading cmake-3.16.3-py3-none-manylinux2010_x86_64.whl (17.0 MB) Collecting cython>=0.29 Downloading Cython-0.29.16-cp37-cp37m-manylinux1_x86_64.whl (2.1 MB) Collecting numpy==1.16.* Downloading numpy-1.16.6-cp37-cp37m-manylinux1_x86_64.whl (17.3 MB) Requirement already satisfied: setuptools>=18.0.1 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 4)) (41.0.1) Collecting setuptools-scm>=1.5.4 Downloading setuptools_scm-3.5.0-py2.py3-none-any.whl (26 kB) Requirement already satisfied: wheel>=0.30 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 6)) (0.34.2) Collecting psutil Downloading psutil-5.7.0.tar.gz (449 kB) Building wheels for collected packages: psutil Building wheel for psutil (setup.py): started Building wheel for psutil (setup.py): finished with status 'done' Created wheel for psutil: filename=psutil-5.7.0-cp37-cp37m-linux_x86_64.whl size=276457 sha256=848d544f64dda72ccb66cf177bf3665162bd1db229cfe9ab99d564997f8e19ab Stored in directory: /tmp/pip-ephem-wheel-cache-zd9l4gt5/wheels/b6/e7/50/aee9cc966163d74430f13f208171dee22f11efa4a4a826661c Successfully built psutil Installing collected packages: cmake, cython, numpy, setuptools-scm, psutil Successfully installed cmake-3.16.3 cython-0.29.16 numpy-1.16.6 psutil-5.7.0 setuptools-scm-3.5.0 [rtd-command-info] start-time: 2020-03-26T02:32:20.580125Z, end-time: 2020-03-26T02:32:28.693208Z, duration: 8, exit-code: 0 git clone --no-single-branch --depth 50 https://github.com/TileDB-Inc/TileDB-Py.git . Cloning into '.'... [rtd-command-info] start-time: 2020-03-26T02:32:29.103873Z, end-time: 2020-03-26T02:32:29.426816Z, duration: 0, exit-code: 0 git checkout --force de2aff00b97498420199a9d16c8375df70e94780 Note: checking out 'de2aff00b97498420199a9d16c8375df70e94780'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at de2aff0 Add error check for libtiledb build validity in setup.py [rtd-command-info] start-time: 2020-03-26T02:32:29.584633Z, end-time: 2020-03-26T02:32:29.893596Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2020-03-26T02:32:31.470413Z, end-time: 2020-03-26T02:32:52.050538Z, duration: 20, exit-code: 0 python3.7 -mvirtualenv Using base prefix '/home/docs/.pyenv/versions/3.7.3' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2020-03-26T02:32:52.233005Z, end-time: 2020-03-26T02:32:53.204815Z, duration: 0, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip Requirement already up-to-date: pip in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (20.0.2) [rtd-command-info] start-time: 2020-03-26T02:32:53.369418Z, end-time: 2020-03-26T02:33:08.154818Z, duration: 14, exit-code: 0 python -m pip install --upgrade --no-cache-dir Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1 Collecting Pygments==2.3.1 Downloading Pygments-2.3.1-py2.py3-none-any.whl (849 kB) Collecting setuptools==41.0.1 Downloading setuptools-41.0.1-py2.py3-none-any.whl (575 kB) Collecting docutils==0.14 Downloading docutils-0.14-py3-none-any.whl (543 kB) Collecting mock==1.0.1 Downloading mock-1.0.1.tar.gz (818 kB) Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.5-py2.py3-none-any.whl (3.1 MB) Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) Collecting readthedocs-sphinx-ext<1.1 Downloading readthedocs_sphinx_ext-1.0.1-py2.py3-none-any.whl (14 kB) Collecting future Downloading future-0.18.2.tar.gz (829 kB) Collecting Jinja2>=2.3 Downloading Jinja2-2.11.1-py2.py3-none-any.whl (126 kB) Collecting imagesize Downloading imagesize-1.2.0-py2.py3-none-any.whl (4.8 kB) Collecting babel!=2.0,>=1.3 Downloading Babel-2.8.0-py2.py3-none-any.whl (8.6 MB) Collecting packaging Downloading packaging-20.3-py2.py3-none-any.whl (37 kB) Collecting sphinxcontrib-websupport Downloading sphinxcontrib_websupport-1.2.1-py2.py3-none-any.whl (39 kB) Collecting six>=1.5 Downloading six-1.14.0-py2.py3-none-any.whl (10 kB) Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.0.0-py2.py3-none-any.whl (97 kB) Collecting requests>=2.0.0 Downloading requests-2.23.0-py2.py3-none-any.whl (58 kB) Collecting MarkupSafe>=0.23 Downloading MarkupSafe-1.1.1-cp37-cp37m-manylinux1_x86_64.whl (27 kB) Collecting pytz>=2015.7 Downloading pytz-2019.3-py2.py3-none-any.whl (509 kB) Collecting pyparsing>=2.0.2 Downloading pyparsing-2.4.6-py2.py3-none-any.whl (67 kB) Collecting idna<3,>=2.5 Downloading idna-2.9-py2.py3-none-any.whl (58 kB) Collecting urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 Downloading urllib3-1.25.8-py2.py3-none-any.whl (125 kB) Collecting chardet<4,>=3.0.2 Downloading chardet-3.0.4-py2.py3-none-any.whl (133 kB) Collecting certifi>=2017.4.17 Downloading certifi-2019.11.28-py2.py3-none-any.whl (156 kB) Building wheels for collected packages: mock, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23754 sha256=e0fee11b877464aa7d0dd4045b32e2ace2e88e905351a4762855c1c815903cf3 Stored in directory: /tmp/pip-ephem-wheel-cache-hjw7tjwg/wheels/16/03/37/f0a64ab894c9102906f192db1a4071b7592292ad661563c69b Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491058 sha256=782051b520c8849442d1d3552466fd165adc7ef8d1c17c6821bda2eb7683417c Stored in directory: /tmp/pip-ephem-wheel-cache-hjw7tjwg/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0 Successfully built mock future Installing collected packages: Pygments, setuptools, docutils, mock, pillow, alabaster, future, commonmark, MarkupSafe, Jinja2, imagesize, pytz, babel, pyparsing, six, packaging, sphinxcontrib-websupport, snowballstemmer, idna, urllib3, chardet, certifi, requests, sphinx, recommonmark, sphinx-rtd-theme, readthedocs-sphinx-ext Attempting uninstall: setuptools Found existing installation: setuptools 46.1.3 Uninstalling setuptools-46.1.3: Successfully uninstalled setuptools-46.1.3 Successfully installed Jinja2-2.11.1 MarkupSafe-1.1.1 Pygments-2.3.1 alabaster-0.7.12 babel-2.8.0 certifi-2019.11.28 chardet-3.0.4 commonmark-0.8.1 docutils-0.14 future-0.18.2 idna-2.9 imagesize-1.2.0 mock-1.0.1 packaging-20.3 pillow-5.4.1 pyparsing-2.4.6 pytz-2019.3 readthedocs-sphinx-ext-1.0.1 recommonmark-0.5.0 requests-2.23.0 setuptools-41.0.1 six-1.14.0 snowballstemmer-2.0.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-websupport-1.2.1 urllib3-1.25.8 [rtd-command-info] start-time: 2020-03-26T02:33:08.460679Z, end-time: 2020-03-26T02:33:34.736551Z, duration: 26, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r requirements.txt Collecting cmake>=3.11.0 Downloading cmake-3.16.3-py3-none-manylinux2010_x86_64.whl (17.0 MB) Collecting cython>=0.29 Downloading Cython-0.29.16-cp37-cp37m-manylinux1_x86_64.whl (2.1 MB) Collecting numpy==1.16.* Downloading numpy-1.16.6-cp37-cp37m-manylinux1_x86_64.whl (17.3 MB) Requirement already satisfied: setuptools>=18.0.1 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 4)) (41.0.1) Collecting setuptools-scm>=1.5.4 Downloading setuptools_scm-3.5.0-py2.py3-none-any.whl (26 kB) Requirement already satisfied: wheel>=0.30 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 6)) (0.34.2) Collecting psutil Downloading psutil-5.7.0.tar.gz (449 kB) Building wheels for collected packages: psutil Building wheel for psutil (setup.py): started Building wheel for psutil (setup.py): finished with status 'done' Created wheel for psutil: filename=psutil-5.7.0-cp37-cp37m-linux_x86_64.whl size=276453 sha256=807e11991b6e5682302b95d0ceb104ea3fc6112681f0d432343c8bd900bf3168 Stored in directory: /tmp/pip-ephem-wheel-cache-fp6tvz1u/wheels/b6/e7/50/aee9cc966163d74430f13f208171dee22f11efa4a4a826661c Successfully built psutil Installing collected packages: cmake, cython, numpy, setuptools-scm, psutil Successfully installed cmake-3.16.3 cython-0.29.16 numpy-1.16.6 psutil-5.7.0 setuptools-scm-3.5.0 [rtd-command-info] start-time: 2020-03-26T02:33:34.889424Z, end-time: 2020-03-26T03:32:34.103812Z, duration: 3539, exit-code: 137 python ./setup.py install --force libtiledb_exists checking 'library_dirs': [] libtiledb_exists found: 'None' running install running bdist_egg GNU Make 4.1 Built for x86_64-pc-linux-gnu Copyright (C) 1988-2014 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. -- The C compiler identification is GNU 7.4.0 -- The CXX compiler identification is GNU 7.4.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Starting TileDB superbuild. -- Found Bzip2: /usr/lib/x86_64-linux-gnu/libbz2.so -- Could NOT find LZ4 (missing: LZ4_LIBRARIES LZ4_INCLUDE_DIR) -- Adding LZ4 as an external project -- Could NOT find Spdlog (missing: SPDLOG_INCLUDE_DIR) -- Adding Spdlog as an external project -- Found Zlib: /usr/lib/x86_64-linux-gnu/libz.so -- Could NOT find Zstd (missing: ZSTD_LIBRARIES ZSTD_INCLUDE_DIR) -- Adding Zstd as an external project -- Found OpenSSL: /usr/lib/x86_64-linux-gnu/libssl.so -- OpenSSL crypto: /usr/lib/x86_64-linux-gnu/libcrypto.so -- root: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/install;/usr/local/opt/openssl -- Could NOT find CURL (missing: CURL_LIBRARY CURL_INCLUDE_DIR) -- Could NOT find Curl (missing: CURL_LIBRARIES CURL_INCLUDE_DIR) -- Adding Curl as an external project CMake Warning at cmake/Modules/FindCurl_EP.cmake:106 (message): TileDB FindOpenSSL_EP did not set TILEDB_OPENSSL_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) CMake Warning at cmake/Modules/FindCurl_EP.cmake:118 (message): TileDB FindZlib_EP did not set TILEDB_ZLIB_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) -- Could NOT find AWSSDK -- Adding AWSSDK as an external project -- Could NOT find TBB (missing: TBB_LIBRARIES TBB_INCLUDE_DIR) -- Adding TBB as an external project -- Not found clang-tidy -- Not found clang-format -- Found Doxygen: /usr/bin/doxygen (found version "1.8.13") found components: doxygen dot -- Install prefix is /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/dist -- Configuring done -- Generating done -- Build files have been written to: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build Scanning dependencies of target ep_curl [ 1%] Creating directories for 'ep_curl' [ 3%] Performing download step (download, verify and extract) for 'ep_curl' -- ep_curl download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-download-*.log [ 5%] No patch step for 'ep_curl' [ 7%] No update step for 'ep_curl' [ 8%] Performing configure step for 'ep_curl' -- ep_curl configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-configure-*.log [ 10%] Performing build step for 'ep_curl' -- ep_curl build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-build-*.log [ 12%] Performing install step for 'ep_curl' -- ep_curl install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-install-*.log [ 14%] Completed 'ep_curl' [ 14%] Built target ep_curl Scanning dependencies of target ep_awssdk [ 16%] Creating directories for 'ep_awssdk' [ 17%] Performing download step (download, verify and extract) for 'ep_awssdk' -- ep_awssdk download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-download-*.log [ 19%] No patch step for 'ep_awssdk' [ 21%] No update step for 'ep_awssdk' [ 23%] Performing configure step for 'ep_awssdk' -- ep_awssdk configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-configure-*.log [ 25%] Performing build step for 'ep_awssdk' Command killed due to excessive memory consumption [rtd-command-info] start-time: 2020-03-26T03:32:13.801278Z, end-time: 2020-03-26T03:32:15.047058Z, duration: 1, exit-code: 0 git clone --no-single-branch --depth 50 https://github.com/TileDB-Inc/TileDB-Py.git . Cloning into '.'... [rtd-command-info] start-time: 2020-03-26T03:32:15.470976Z, end-time: 2020-03-26T03:32:15.802351Z, duration: 0, exit-code: 0 git checkout --force de2aff00b97498420199a9d16c8375df70e94780 Note: checking out 'de2aff00b97498420199a9d16c8375df70e94780'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at de2aff0 Add error check for libtiledb build validity in setup.py [rtd-command-info] start-time: 2020-03-26T03:32:15.957832Z, end-time: 2020-03-26T03:32:16.274975Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2020-03-26T03:32:17.748797Z, end-time: 2020-03-26T03:32:22.592476Z, duration: 4, exit-code: 0 python3.7 -mvirtualenv Using base prefix '/home/docs/.pyenv/versions/3.7.3' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2020-03-26T03:32:22.751366Z, end-time: 2020-03-26T03:32:23.782774Z, duration: 1, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip Requirement already up-to-date: pip in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (20.0.2) [rtd-command-info] start-time: 2020-03-26T03:32:23.949174Z, end-time: 2020-03-26T03:32:35.871878Z, duration: 11, exit-code: 0 python -m pip install --upgrade --no-cache-dir Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1 Collecting Pygments==2.3.1 Downloading Pygments-2.3.1-py2.py3-none-any.whl (849 kB) Collecting setuptools==41.0.1 Downloading setuptools-41.0.1-py2.py3-none-any.whl (575 kB) Collecting docutils==0.14 Downloading docutils-0.14-py3-none-any.whl (543 kB) Collecting mock==1.0.1 Downloading mock-1.0.1.tar.gz (818 kB) Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.5-py2.py3-none-any.whl (3.1 MB) Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) Collecting readthedocs-sphinx-ext<1.1 Downloading readthedocs_sphinx_ext-1.0.1-py2.py3-none-any.whl (14 kB) Collecting future Downloading future-0.18.2.tar.gz (829 kB) Collecting packaging Downloading packaging-20.3-py2.py3-none-any.whl (37 kB) Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.0.0-py2.py3-none-any.whl (97 kB) Collecting requests>=2.0.0 Downloading requests-2.23.0-py2.py3-none-any.whl (58 kB) Collecting babel!=2.0,>=1.3 Downloading Babel-2.8.0-py2.py3-none-any.whl (8.6 MB) Collecting imagesize Downloading imagesize-1.2.0-py2.py3-none-any.whl (4.8 kB) Collecting six>=1.5 Downloading six-1.14.0-py2.py3-none-any.whl (10 kB) Collecting sphinxcontrib-websupport Downloading sphinxcontrib_websupport-1.2.1-py2.py3-none-any.whl (39 kB) Collecting Jinja2>=2.3 Downloading Jinja2-2.11.1-py2.py3-none-any.whl (126 kB) Collecting pyparsing>=2.0.2 Downloading pyparsing-2.4.6-py2.py3-none-any.whl (67 kB) Collecting idna<3,>=2.5 Downloading idna-2.9-py2.py3-none-any.whl (58 kB) Collecting certifi>=2017.4.17 Downloading certifi-2019.11.28-py2.py3-none-any.whl (156 kB) Collecting chardet<4,>=3.0.2 Downloading chardet-3.0.4-py2.py3-none-any.whl (133 kB) Collecting urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 Downloading urllib3-1.25.8-py2.py3-none-any.whl (125 kB) Collecting pytz>=2015.7 Downloading pytz-2019.3-py2.py3-none-any.whl (509 kB) Collecting MarkupSafe>=0.23 Downloading MarkupSafe-1.1.1-cp37-cp37m-manylinux1_x86_64.whl (27 kB) Building wheels for collected packages: mock, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23754 sha256=2b017e63662fc9c4e657339f8c45820a3a5a87667ce172c53a7c057c4a9d394f Stored in directory: /tmp/pip-ephem-wheel-cache-w9w1qpgz/wheels/16/03/37/f0a64ab894c9102906f192db1a4071b7592292ad661563c69b Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491058 sha256=1c5c3b0895d0790ace9f378a613fb00872668c1dfde75ad4261cdca721e00f4e Stored in directory: /tmp/pip-ephem-wheel-cache-w9w1qpgz/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0 Successfully built mock future Installing collected packages: Pygments, setuptools, docutils, mock, pillow, alabaster, future, commonmark, pyparsing, six, packaging, snowballstemmer, idna, certifi, chardet, urllib3, requests, pytz, babel, imagesize, sphinxcontrib-websupport, MarkupSafe, Jinja2, sphinx, recommonmark, sphinx-rtd-theme, readthedocs-sphinx-ext Attempting uninstall: setuptools Found existing installation: setuptools 46.1.3 Uninstalling setuptools-46.1.3: Successfully uninstalled setuptools-46.1.3 Successfully installed Jinja2-2.11.1 MarkupSafe-1.1.1 Pygments-2.3.1 alabaster-0.7.12 babel-2.8.0 certifi-2019.11.28 chardet-3.0.4 commonmark-0.8.1 docutils-0.14 future-0.18.2 idna-2.9 imagesize-1.2.0 mock-1.0.1 packaging-20.3 pillow-5.4.1 pyparsing-2.4.6 pytz-2019.3 readthedocs-sphinx-ext-1.0.1 recommonmark-0.5.0 requests-2.23.0 setuptools-41.0.1 six-1.14.0 snowballstemmer-2.0.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-websupport-1.2.1 urllib3-1.25.8 [rtd-command-info] start-time: 2020-03-26T03:32:36.029958Z, end-time: 2020-03-26T03:32:47.973183Z, duration: 11, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r requirements.txt Collecting cmake>=3.11.0 Downloading cmake-3.16.3-py3-none-manylinux2010_x86_64.whl (17.0 MB) Collecting cython>=0.29 Downloading Cython-0.29.16-cp37-cp37m-manylinux1_x86_64.whl (2.1 MB) Collecting numpy==1.16.* Downloading numpy-1.16.6-cp37-cp37m-manylinux1_x86_64.whl (17.3 MB) Requirement already satisfied: setuptools>=18.0.1 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 4)) (41.0.1) Collecting setuptools-scm>=1.5.4 Downloading setuptools_scm-3.5.0-py2.py3-none-any.whl (26 kB) Requirement already satisfied: wheel>=0.30 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 6)) (0.34.2) Collecting psutil Downloading psutil-5.7.0.tar.gz (449 kB) Building wheels for collected packages: psutil Building wheel for psutil (setup.py): started Building wheel for psutil (setup.py): finished with status 'done' Created wheel for psutil: filename=psutil-5.7.0-cp37-cp37m-linux_x86_64.whl size=276468 sha256=983fffba999f112e83d1e919d3c37a79573917c06b9817db9e7848be800caefe Stored in directory: /tmp/pip-ephem-wheel-cache-szhfe3ly/wheels/b6/e7/50/aee9cc966163d74430f13f208171dee22f11efa4a4a826661c Successfully built psutil Installing collected packages: cmake, cython, numpy, setuptools-scm, psutil Successfully installed cmake-3.16.3 cython-0.29.16 numpy-1.16.6 psutil-5.7.0 setuptools-scm-3.5.0 [rtd-command-info] start-time: 2020-03-26T03:32:48.136481Z, end-time: 2020-03-26T04:32:19.507941Z, duration: 3571, exit-code: 137 python ./setup.py install --force libtiledb_exists checking 'library_dirs': [] libtiledb_exists found: 'None' running install running bdist_egg GNU Make 4.1 Built for x86_64-pc-linux-gnu Copyright (C) 1988-2014 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. -- The C compiler identification is GNU 7.4.0 -- The CXX compiler identification is GNU 7.4.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Starting TileDB superbuild. -- Found Bzip2: /usr/lib/x86_64-linux-gnu/libbz2.so -- Could NOT find LZ4 (missing: LZ4_LIBRARIES LZ4_INCLUDE_DIR) -- Adding LZ4 as an external project -- Could NOT find Spdlog (missing: SPDLOG_INCLUDE_DIR) -- Adding Spdlog as an external project -- Found Zlib: /usr/lib/x86_64-linux-gnu/libz.so -- Could NOT find Zstd (missing: ZSTD_LIBRARIES ZSTD_INCLUDE_DIR) -- Adding Zstd as an external project -- Found OpenSSL: /usr/lib/x86_64-linux-gnu/libssl.so -- OpenSSL crypto: /usr/lib/x86_64-linux-gnu/libcrypto.so -- root: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/install;/usr/local/opt/openssl -- Could NOT find CURL (missing: CURL_LIBRARY CURL_INCLUDE_DIR) -- Could NOT find Curl (missing: CURL_LIBRARIES CURL_INCLUDE_DIR) -- Adding Curl as an external project CMake Warning at cmake/Modules/FindCurl_EP.cmake:106 (message): TileDB FindOpenSSL_EP did not set TILEDB_OPENSSL_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) CMake Warning at cmake/Modules/FindCurl_EP.cmake:118 (message): TileDB FindZlib_EP did not set TILEDB_ZLIB_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) -- Could NOT find AWSSDK -- Adding AWSSDK as an external project -- Could NOT find TBB (missing: TBB_LIBRARIES TBB_INCLUDE_DIR) -- Adding TBB as an external project -- Not found clang-tidy -- Not found clang-format -- Found Doxygen: /usr/bin/doxygen (found version "1.8.13") found components: doxygen dot -- Install prefix is /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/dist -- Configuring done -- Generating done -- Build files have been written to: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build Scanning dependencies of target ep_curl [ 1%] Creating directories for 'ep_curl' [ 3%] Performing download step (download, verify and extract) for 'ep_curl' -- ep_curl download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-download-*.log [ 5%] No patch step for 'ep_curl' [ 7%] No update step for 'ep_curl' [ 8%] Performing configure step for 'ep_curl' -- ep_curl configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-configure-*.log [ 10%] Performing build step for 'ep_curl' -- ep_curl build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-build-*.log [ 12%] Performing install step for 'ep_curl' -- ep_curl install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-install-*.log [ 14%] Completed 'ep_curl' [ 14%] Built target ep_curl Scanning dependencies of target ep_lz4 [ 16%] Creating directories for 'ep_lz4' [ 17%] Performing download step (download, verify and extract) for 'ep_lz4' -- ep_lz4 download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_lz4-stamp/ep_lz4-download-*.log [ 19%] No patch step for 'ep_lz4' [ 21%] No update step for 'ep_lz4' [ 23%] Performing configure step for 'ep_lz4' -- ep_lz4 configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_lz4-stamp/ep_lz4-configure-*.log [ 25%] Performing build step for 'ep_lz4' -- ep_lz4 build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_lz4-stamp/ep_lz4-build-*.log [ 26%] Performing install step for 'ep_lz4' -- ep_lz4 install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_lz4-stamp/ep_lz4-install-*.log [ 28%] Completed 'ep_lz4' [ 28%] Built target ep_lz4 Scanning dependencies of target ep_zstd [ 30%] Creating directories for 'ep_zstd' [ 32%] Performing download step (download, verify and extract) for 'ep_zstd' -- ep_zstd download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-download-*.log [ 33%] No patch step for 'ep_zstd' [ 35%] No update step for 'ep_zstd' [ 37%] Performing configure step for 'ep_zstd' -- ep_zstd configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-configure-*.log [ 39%] Performing build step for 'ep_zstd' -- ep_zstd build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-build-*.log [ 41%] Performing install step for 'ep_zstd' -- ep_zstd install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-install-*.log [ 42%] Completed 'ep_zstd' [ 42%] Built target ep_zstd Scanning dependencies of target ep_tbb [ 44%] Creating directories for 'ep_tbb' [ 46%] Performing download step (download, verify and extract) for 'ep_tbb' -- ep_tbb download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_tbb-stamp/ep_tbb-download-*.log [ 48%] No patch step for 'ep_tbb' [ 50%] No update step for 'ep_tbb' [ 51%] No configure step for 'ep_tbb' [ 53%] No build step for 'ep_tbb' [ 55%] No install step for 'ep_tbb' [ 57%] Completed 'ep_tbb' [ 57%] Built target ep_tbb Scanning dependencies of target ep_awssdk [ 58%] Creating directories for 'ep_awssdk' [ 60%] Performing download step (download, verify and extract) for 'ep_awssdk' -- ep_awssdk download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-download-*.log [ 62%] No patch step for 'ep_awssdk' [ 64%] No update step for 'ep_awssdk' [ 66%] Performing configure step for 'ep_awssdk' -- ep_awssdk configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-configure-*.log [ 67%] Performing build step for 'ep_awssdk' Command killed due to excessive memory consumption [rtd-command-info] start-time: 2020-03-26T04:32:14.159507Z, end-time: 2020-03-26T04:32:19.835915Z, duration: 5, exit-code: 0 git clone --no-single-branch --depth 50 https://github.com/TileDB-Inc/TileDB-Py.git . Cloning into '.'... [rtd-command-info] start-time: 2020-03-26T04:32:20.302895Z, end-time: 2020-03-26T04:32:20.608892Z, duration: 0, exit-code: 0 git checkout --force de2aff00b97498420199a9d16c8375df70e94780 Note: checking out 'de2aff00b97498420199a9d16c8375df70e94780'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at de2aff0 Add error check for libtiledb build validity in setup.py [rtd-command-info] start-time: 2020-03-26T04:32:20.764014Z, end-time: 2020-03-26T04:32:21.079265Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2020-03-26T04:32:22.469683Z, end-time: 2020-03-26T04:32:45.474399Z, duration: 23, exit-code: 0 python3.7 -mvirtualenv Using base prefix '/home/docs/.pyenv/versions/3.7.3' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2020-03-26T04:32:45.636656Z, end-time: 2020-03-26T04:32:46.605180Z, duration: 0, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip Requirement already up-to-date: pip in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (20.0.2) [rtd-command-info] start-time: 2020-03-26T04:32:46.771142Z, end-time: 2020-03-26T04:33:01.721247Z, duration: 14, exit-code: 0 python -m pip install --upgrade --no-cache-dir Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1 Collecting Pygments==2.3.1 Downloading Pygments-2.3.1-py2.py3-none-any.whl (849 kB) Collecting setuptools==41.0.1 Downloading setuptools-41.0.1-py2.py3-none-any.whl (575 kB) Collecting docutils==0.14 Downloading docutils-0.14-py3-none-any.whl (543 kB) Collecting mock==1.0.1 Downloading mock-1.0.1.tar.gz (818 kB) Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.5-py2.py3-none-any.whl (3.1 MB) Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) Collecting readthedocs-sphinx-ext<1.1 Downloading readthedocs_sphinx_ext-1.0.1-py2.py3-none-any.whl (14 kB) Collecting future Downloading future-0.18.2.tar.gz (829 kB) Collecting sphinxcontrib-websupport Downloading sphinxcontrib_websupport-1.2.1-py2.py3-none-any.whl (39 kB) Collecting six>=1.5 Downloading six-1.14.0-py2.py3-none-any.whl (10 kB) Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.0.0-py2.py3-none-any.whl (97 kB) Collecting packaging Downloading packaging-20.3-py2.py3-none-any.whl (37 kB) Collecting babel!=2.0,>=1.3 Downloading Babel-2.8.0-py2.py3-none-any.whl (8.6 MB) Collecting requests>=2.0.0 Downloading requests-2.23.0-py2.py3-none-any.whl (58 kB) Collecting imagesize Downloading imagesize-1.2.0-py2.py3-none-any.whl (4.8 kB) Collecting Jinja2>=2.3 Downloading Jinja2-2.11.1-py2.py3-none-any.whl (126 kB) Collecting pyparsing>=2.0.2 Downloading pyparsing-2.4.6-py2.py3-none-any.whl (67 kB) Collecting pytz>=2015.7 Downloading pytz-2019.3-py2.py3-none-any.whl (509 kB) Collecting urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 Downloading urllib3-1.25.8-py2.py3-none-any.whl (125 kB) Collecting chardet<4,>=3.0.2 Downloading chardet-3.0.4-py2.py3-none-any.whl (133 kB) Collecting certifi>=2017.4.17 Downloading certifi-2019.11.28-py2.py3-none-any.whl (156 kB) Collecting idna<3,>=2.5 Downloading idna-2.9-py2.py3-none-any.whl (58 kB) Collecting MarkupSafe>=0.23 Downloading MarkupSafe-1.1.1-cp37-cp37m-manylinux1_x86_64.whl (27 kB) Building wheels for collected packages: mock, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23754 sha256=1c760d30bc766fc661abb0ad19c88857557973c02afc56a445e04df77533f4cf Stored in directory: /tmp/pip-ephem-wheel-cache-8leak7bx/wheels/16/03/37/f0a64ab894c9102906f192db1a4071b7592292ad661563c69b Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491058 sha256=02a25a6631520cfda01fb35865e3d4da0616a0392efbf8eeddfc6360c1103809 Stored in directory: /tmp/pip-ephem-wheel-cache-8leak7bx/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0 Successfully built mock future Installing collected packages: Pygments, setuptools, docutils, mock, pillow, alabaster, future, commonmark, sphinxcontrib-websupport, six, snowballstemmer, pyparsing, packaging, pytz, babel, urllib3, chardet, certifi, idna, requests, imagesize, MarkupSafe, Jinja2, sphinx, recommonmark, sphinx-rtd-theme, readthedocs-sphinx-ext Attempting uninstall: setuptools Found existing installation: setuptools 46.1.3 Uninstalling setuptools-46.1.3: Successfully uninstalled setuptools-46.1.3 Successfully installed Jinja2-2.11.1 MarkupSafe-1.1.1 Pygments-2.3.1 alabaster-0.7.12 babel-2.8.0 certifi-2019.11.28 chardet-3.0.4 commonmark-0.8.1 docutils-0.14 future-0.18.2 idna-2.9 imagesize-1.2.0 mock-1.0.1 packaging-20.3 pillow-5.4.1 pyparsing-2.4.6 pytz-2019.3 readthedocs-sphinx-ext-1.0.1 recommonmark-0.5.0 requests-2.23.0 setuptools-41.0.1 six-1.14.0 snowballstemmer-2.0.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-websupport-1.2.1 urllib3-1.25.8 [rtd-command-info] start-time: 2020-03-26T04:33:01.893999Z, end-time: 2020-03-26T04:33:28.260787Z, duration: 26, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r requirements.txt Collecting cmake>=3.11.0 Downloading cmake-3.16.3-py3-none-manylinux2010_x86_64.whl (17.0 MB) Collecting cython>=0.29 Downloading Cython-0.29.16-cp37-cp37m-manylinux1_x86_64.whl (2.1 MB) Collecting numpy==1.16.* Downloading numpy-1.16.6-cp37-cp37m-manylinux1_x86_64.whl (17.3 MB) Requirement already satisfied: setuptools>=18.0.1 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 4)) (41.0.1) Collecting setuptools-scm>=1.5.4 Downloading setuptools_scm-3.5.0-py2.py3-none-any.whl (26 kB) Requirement already satisfied: wheel>=0.30 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 6)) (0.34.2) Collecting psutil Downloading psutil-5.7.0.tar.gz (449 kB) Building wheels for collected packages: psutil Building wheel for psutil (setup.py): started Building wheel for psutil (setup.py): finished with status 'done' Created wheel for psutil: filename=psutil-5.7.0-cp37-cp37m-linux_x86_64.whl size=276461 sha256=b5ba7b612d4baa1473380f7d4ebac3e1046abd676ef6f5d10ae59632a8262eab Stored in directory: /tmp/pip-ephem-wheel-cache-vifflv1y/wheels/b6/e7/50/aee9cc966163d74430f13f208171dee22f11efa4a4a826661c Successfully built psutil Installing collected packages: cmake, cython, numpy, setuptools-scm, psutil Successfully installed cmake-3.16.3 cython-0.29.16 numpy-1.16.6 psutil-5.7.0 setuptools-scm-3.5.0 [rtd-command-info] start-time: 2020-03-26T04:33:28.439744Z, end-time: 2020-03-26T05:32:24.601766Z, duration: 3536, exit-code: 137 python ./setup.py install --force libtiledb_exists checking 'library_dirs': [] libtiledb_exists found: 'None' running install running bdist_egg GNU Make 4.1 Built for x86_64-pc-linux-gnu Copyright (C) 1988-2014 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. -- The C compiler identification is GNU 7.4.0 -- The CXX compiler identification is GNU 7.4.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Starting TileDB superbuild. -- Found Bzip2: /usr/lib/x86_64-linux-gnu/libbz2.so -- Could NOT find LZ4 (missing: LZ4_LIBRARIES LZ4_INCLUDE_DIR) -- Adding LZ4 as an external project -- Could NOT find Spdlog (missing: SPDLOG_INCLUDE_DIR) -- Adding Spdlog as an external project -- Found Zlib: /usr/lib/x86_64-linux-gnu/libz.so -- Could NOT find Zstd (missing: ZSTD_LIBRARIES ZSTD_INCLUDE_DIR) -- Adding Zstd as an external project -- Found OpenSSL: /usr/lib/x86_64-linux-gnu/libssl.so -- OpenSSL crypto: /usr/lib/x86_64-linux-gnu/libcrypto.so -- root: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/install;/usr/local/opt/openssl -- Could NOT find CURL (missing: CURL_LIBRARY CURL_INCLUDE_DIR) -- Could NOT find Curl (missing: CURL_LIBRARIES CURL_INCLUDE_DIR) -- Adding Curl as an external project CMake Warning at cmake/Modules/FindCurl_EP.cmake:106 (message): TileDB FindOpenSSL_EP did not set TILEDB_OPENSSL_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) CMake Warning at cmake/Modules/FindCurl_EP.cmake:118 (message): TileDB FindZlib_EP did not set TILEDB_ZLIB_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) -- Could NOT find AWSSDK -- Adding AWSSDK as an external project -- Could NOT find TBB (missing: TBB_LIBRARIES TBB_INCLUDE_DIR) -- Adding TBB as an external project -- Not found clang-tidy -- Not found clang-format -- Found Doxygen: /usr/bin/doxygen (found version "1.8.13") found components: doxygen dot -- Install prefix is /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/dist -- Configuring done -- Generating done -- Build files have been written to: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build Scanning dependencies of target ep_curl [ 1%] Creating directories for 'ep_curl' [ 3%] Performing download step (download, verify and extract) for 'ep_curl' -- ep_curl download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-download-*.log [ 5%] No patch step for 'ep_curl' [ 7%] No update step for 'ep_curl' [ 8%] Performing configure step for 'ep_curl' -- ep_curl configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-configure-*.log [ 10%] Performing build step for 'ep_curl' -- ep_curl build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-build-*.log [ 12%] Performing install step for 'ep_curl' -- ep_curl install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-install-*.log [ 14%] Completed 'ep_curl' [ 14%] Built target ep_curl Scanning dependencies of target ep_awssdk [ 16%] Creating directories for 'ep_awssdk' [ 17%] Performing download step (download, verify and extract) for 'ep_awssdk' -- ep_awssdk download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-download-*.log [ 19%] No patch step for 'ep_awssdk' [ 21%] No update step for 'ep_awssdk' [ 23%] Performing configure step for 'ep_awssdk' -- ep_awssdk configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-configure-*.log [ 25%] Performing build step for 'ep_awssdk' Command killed due to excessive memory consumption [rtd-command-info] start-time: 2020-03-26T05:32:14.616770Z, end-time: 2020-03-26T05:32:15.997135Z, duration: 1, exit-code: 0 git clone --no-single-branch --depth 50 https://github.com/TileDB-Inc/TileDB-Py.git . Cloning into '.'... [rtd-command-info] start-time: 2020-03-26T05:32:16.419192Z, end-time: 2020-03-26T05:32:16.754192Z, duration: 0, exit-code: 0 git checkout --force de2aff00b97498420199a9d16c8375df70e94780 Note: checking out 'de2aff00b97498420199a9d16c8375df70e94780'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at de2aff0 Add error check for libtiledb build validity in setup.py [rtd-command-info] start-time: 2020-03-26T05:32:16.916150Z, end-time: 2020-03-26T05:32:17.234149Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2020-03-26T05:32:18.688947Z, end-time: 2020-03-26T05:32:23.414255Z, duration: 4, exit-code: 0 python3.7 -mvirtualenv Using base prefix '/home/docs/.pyenv/versions/3.7.3' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2020-03-26T05:32:23.574476Z, end-time: 2020-03-26T05:32:24.562183Z, duration: 0, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip Requirement already up-to-date: pip in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (20.0.2) [rtd-command-info] start-time: 2020-03-26T05:32:24.735817Z, end-time: 2020-03-26T05:32:36.820762Z, duration: 12, exit-code: 0 python -m pip install --upgrade --no-cache-dir Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1 Collecting Pygments==2.3.1 Downloading Pygments-2.3.1-py2.py3-none-any.whl (849 kB) Collecting setuptools==41.0.1 Downloading setuptools-41.0.1-py2.py3-none-any.whl (575 kB) Collecting docutils==0.14 Downloading docutils-0.14-py3-none-any.whl (543 kB) Collecting mock==1.0.1 Downloading mock-1.0.1.tar.gz (818 kB) Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.5-py2.py3-none-any.whl (3.1 MB) Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) Collecting readthedocs-sphinx-ext<1.1 Downloading readthedocs_sphinx_ext-1.0.1-py2.py3-none-any.whl (14 kB) Collecting future Downloading future-0.18.2.tar.gz (829 kB) Collecting requests>=2.0.0 Downloading requests-2.23.0-py2.py3-none-any.whl (58 kB) Collecting six>=1.5 Downloading six-1.14.0-py2.py3-none-any.whl (10 kB) Collecting babel!=2.0,>=1.3 Downloading Babel-2.8.0-py2.py3-none-any.whl (8.6 MB) Collecting packaging Downloading packaging-20.3-py2.py3-none-any.whl (37 kB) Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.0.0-py2.py3-none-any.whl (97 kB) Collecting imagesize Downloading imagesize-1.2.0-py2.py3-none-any.whl (4.8 kB) Collecting Jinja2>=2.3 Downloading Jinja2-2.11.1-py2.py3-none-any.whl (126 kB) Collecting sphinxcontrib-websupport Downloading sphinxcontrib_websupport-1.2.1-py2.py3-none-any.whl (39 kB) Collecting idna<3,>=2.5 Downloading idna-2.9-py2.py3-none-any.whl (58 kB) Collecting urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 Downloading urllib3-1.25.8-py2.py3-none-any.whl (125 kB) Collecting certifi>=2017.4.17 Downloading certifi-2019.11.28-py2.py3-none-any.whl (156 kB) Collecting chardet<4,>=3.0.2 Downloading chardet-3.0.4-py2.py3-none-any.whl (133 kB) Collecting pytz>=2015.7 Downloading pytz-2019.3-py2.py3-none-any.whl (509 kB) Collecting pyparsing>=2.0.2 Downloading pyparsing-2.4.6-py2.py3-none-any.whl (67 kB) Collecting MarkupSafe>=0.23 Downloading MarkupSafe-1.1.1-cp37-cp37m-manylinux1_x86_64.whl (27 kB) Building wheels for collected packages: mock, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23754 sha256=c00513491cb9ea751efa9d47db550a5fad254e97c489712b1957da9ecca11326 Stored in directory: /tmp/pip-ephem-wheel-cache-3ei_rt1n/wheels/16/03/37/f0a64ab894c9102906f192db1a4071b7592292ad661563c69b Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491058 sha256=a2ee54c96ab7a9bb5faad861c3e7f1dcd21e4d0d336f620b338ae26aaa40ac76 Stored in directory: /tmp/pip-ephem-wheel-cache-3ei_rt1n/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0 Successfully built mock future Installing collected packages: Pygments, setuptools, docutils, mock, pillow, alabaster, future, commonmark, idna, urllib3, certifi, chardet, requests, six, pytz, babel, pyparsing, packaging, snowballstemmer, imagesize, MarkupSafe, Jinja2, sphinxcontrib-websupport, sphinx, recommonmark, sphinx-rtd-theme, readthedocs-sphinx-ext Attempting uninstall: setuptools Found existing installation: setuptools 46.1.3 Uninstalling setuptools-46.1.3: Successfully uninstalled setuptools-46.1.3 Successfully installed Jinja2-2.11.1 MarkupSafe-1.1.1 Pygments-2.3.1 alabaster-0.7.12 babel-2.8.0 certifi-2019.11.28 chardet-3.0.4 commonmark-0.8.1 docutils-0.14 future-0.18.2 idna-2.9 imagesize-1.2.0 mock-1.0.1 packaging-20.3 pillow-5.4.1 pyparsing-2.4.6 pytz-2019.3 readthedocs-sphinx-ext-1.0.1 recommonmark-0.5.0 requests-2.23.0 setuptools-41.0.1 six-1.14.0 snowballstemmer-2.0.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-websupport-1.2.1 urllib3-1.25.8 [rtd-command-info] start-time: 2020-03-26T05:32:36.981961Z, end-time: 2020-03-26T05:32:49.079512Z, duration: 12, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r requirements.txt Collecting cmake>=3.11.0 Downloading cmake-3.16.3-py3-none-manylinux2010_x86_64.whl (17.0 MB) Collecting cython>=0.29 Downloading Cython-0.29.16-cp37-cp37m-manylinux1_x86_64.whl (2.1 MB) Collecting numpy==1.16.* Downloading numpy-1.16.6-cp37-cp37m-manylinux1_x86_64.whl (17.3 MB) Requirement already satisfied: setuptools>=18.0.1 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 4)) (41.0.1) Collecting setuptools-scm>=1.5.4 Downloading setuptools_scm-3.5.0-py2.py3-none-any.whl (26 kB) Requirement already satisfied: wheel>=0.30 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 6)) (0.34.2) Collecting psutil Downloading psutil-5.7.0.tar.gz (449 kB) Building wheels for collected packages: psutil Building wheel for psutil (setup.py): started Building wheel for psutil (setup.py): finished with status 'done' Created wheel for psutil: filename=psutil-5.7.0-cp37-cp37m-linux_x86_64.whl size=276467 sha256=d590c94d703e495cf219d36499210be6b02882418ee9f121d78c720cfc08f7b8 Stored in directory: /tmp/pip-ephem-wheel-cache-0w5ecvad/wheels/b6/e7/50/aee9cc966163d74430f13f208171dee22f11efa4a4a826661c Successfully built psutil Installing collected packages: cmake, cython, numpy, setuptools-scm, psutil Successfully installed cmake-3.16.3 cython-0.29.16 numpy-1.16.6 psutil-5.7.0 setuptools-scm-3.5.0 [rtd-command-info] start-time: 2020-03-26T05:32:49.346693Z, end-time: 2020-03-26T06:32:20.687184Z, duration: 3571, exit-code: 137 python ./setup.py install --force libtiledb_exists checking 'library_dirs': [] libtiledb_exists found: 'None' running install running bdist_egg GNU Make 4.1 Built for x86_64-pc-linux-gnu Copyright (C) 1988-2014 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. -- The C compiler identification is GNU 7.4.0 -- The CXX compiler identification is GNU 7.4.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Starting TileDB superbuild. -- Found Bzip2: /usr/lib/x86_64-linux-gnu/libbz2.so -- Could NOT find LZ4 (missing: LZ4_LIBRARIES LZ4_INCLUDE_DIR) -- Adding LZ4 as an external project -- Could NOT find Spdlog (missing: SPDLOG_INCLUDE_DIR) -- Adding Spdlog as an external project -- Found Zlib: /usr/lib/x86_64-linux-gnu/libz.so -- Could NOT find Zstd (missing: ZSTD_LIBRARIES ZSTD_INCLUDE_DIR) -- Adding Zstd as an external project -- Found OpenSSL: /usr/lib/x86_64-linux-gnu/libssl.so -- OpenSSL crypto: /usr/lib/x86_64-linux-gnu/libcrypto.so -- root: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/install;/usr/local/opt/openssl -- Could NOT find CURL (missing: CURL_LIBRARY CURL_INCLUDE_DIR) -- Could NOT find Curl (missing: CURL_LIBRARIES CURL_INCLUDE_DIR) -- Adding Curl as an external project CMake Warning at cmake/Modules/FindCurl_EP.cmake:106 (message): TileDB FindOpenSSL_EP did not set TILEDB_OPENSSL_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) CMake Warning at cmake/Modules/FindCurl_EP.cmake:118 (message): TileDB FindZlib_EP did not set TILEDB_ZLIB_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) -- Could NOT find AWSSDK -- Adding AWSSDK as an external project -- Could NOT find TBB (missing: TBB_LIBRARIES TBB_INCLUDE_DIR) -- Adding TBB as an external project -- Not found clang-tidy -- Not found clang-format -- Found Doxygen: /usr/bin/doxygen (found version "1.8.13") found components: doxygen dot -- Install prefix is /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/dist -- Configuring done -- Generating done -- Build files have been written to: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build Scanning dependencies of target ep_curl [ 1%] Creating directories for 'ep_curl' [ 3%] Performing download step (download, verify and extract) for 'ep_curl' -- ep_curl download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-download-*.log [ 5%] No patch step for 'ep_curl' [ 7%] No update step for 'ep_curl' [ 8%] Performing configure step for 'ep_curl' -- ep_curl configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-configure-*.log [ 10%] Performing build step for 'ep_curl' -- ep_curl build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-build-*.log [ 12%] Performing install step for 'ep_curl' -- ep_curl install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-install-*.log [ 14%] Completed 'ep_curl' [ 14%] Built target ep_curl Scanning dependencies of target ep_lz4 [ 16%] Creating directories for 'ep_lz4' [ 17%] Performing download step (download, verify and extract) for 'ep_lz4' -- ep_lz4 download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_lz4-stamp/ep_lz4-download-*.log [ 19%] No patch step for 'ep_lz4' [ 21%] No update step for 'ep_lz4' [ 23%] Performing configure step for 'ep_lz4' -- ep_lz4 configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_lz4-stamp/ep_lz4-configure-*.log [ 25%] Performing build step for 'ep_lz4' -- ep_lz4 build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_lz4-stamp/ep_lz4-build-*.log [ 26%] Performing install step for 'ep_lz4' -- ep_lz4 install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_lz4-stamp/ep_lz4-install-*.log [ 28%] Completed 'ep_lz4' [ 28%] Built target ep_lz4 Scanning dependencies of target ep_zstd [ 30%] Creating directories for 'ep_zstd' [ 32%] Performing download step (download, verify and extract) for 'ep_zstd' -- ep_zstd download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-download-*.log [ 33%] No patch step for 'ep_zstd' [ 35%] No update step for 'ep_zstd' [ 37%] Performing configure step for 'ep_zstd' -- ep_zstd configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-configure-*.log [ 39%] Performing build step for 'ep_zstd' -- ep_zstd build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-build-*.log [ 41%] Performing install step for 'ep_zstd' -- ep_zstd install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-install-*.log [ 42%] Completed 'ep_zstd' [ 42%] Built target ep_zstd Scanning dependencies of target ep_tbb [ 44%] Creating directories for 'ep_tbb' [ 46%] Performing download step (download, verify and extract) for 'ep_tbb' -- ep_tbb download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_tbb-stamp/ep_tbb-download-*.log [ 48%] No patch step for 'ep_tbb' [ 50%] No update step for 'ep_tbb' [ 51%] No configure step for 'ep_tbb' [ 53%] No build step for 'ep_tbb' [ 55%] No install step for 'ep_tbb' [ 57%] Completed 'ep_tbb' [ 57%] Built target ep_tbb Scanning dependencies of target ep_awssdk [ 58%] Creating directories for 'ep_awssdk' [ 60%] Performing download step (download, verify and extract) for 'ep_awssdk' -- ep_awssdk download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-download-*.log [ 62%] No patch step for 'ep_awssdk' [ 64%] No update step for 'ep_awssdk' [ 66%] Performing configure step for 'ep_awssdk' -- ep_awssdk configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-configure-*.log [ 67%] Performing build step for 'ep_awssdk' Command killed due to excessive memory consumption [rtd-command-info] start-time: 2020-03-26T06:32:15.049313Z, end-time: 2020-03-26T06:32:19.365948Z, duration: 4, exit-code: 0 git clone --no-single-branch --depth 50 https://github.com/TileDB-Inc/TileDB-Py.git . Cloning into '.'... [rtd-command-info] start-time: 2020-03-26T06:32:19.803319Z, end-time: 2020-03-26T06:32:20.126785Z, duration: 0, exit-code: 0 git checkout --force de2aff00b97498420199a9d16c8375df70e94780 Note: checking out 'de2aff00b97498420199a9d16c8375df70e94780'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at de2aff0 Add error check for libtiledb build validity in setup.py [rtd-command-info] start-time: 2020-03-26T06:32:20.282615Z, end-time: 2020-03-26T06:32:20.604930Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2020-03-26T06:32:22.116679Z, end-time: 2020-03-26T06:32:39.941461Z, duration: 17, exit-code: 0 python3.7 -mvirtualenv Using base prefix '/home/docs/.pyenv/versions/3.7.3' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2020-03-26T06:32:40.101771Z, end-time: 2020-03-26T06:32:41.120726Z, duration: 1, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip Requirement already up-to-date: pip in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (20.0.2) [rtd-command-info] start-time: 2020-03-26T06:32:41.299430Z, end-time: 2020-03-26T06:32:54.167970Z, duration: 12, exit-code: 0 python -m pip install --upgrade --no-cache-dir Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1 Collecting Pygments==2.3.1 Downloading Pygments-2.3.1-py2.py3-none-any.whl (849 kB) Collecting setuptools==41.0.1 Downloading setuptools-41.0.1-py2.py3-none-any.whl (575 kB) Collecting docutils==0.14 Downloading docutils-0.14-py3-none-any.whl (543 kB) Collecting mock==1.0.1 Downloading mock-1.0.1.tar.gz (818 kB) Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.5-py2.py3-none-any.whl (3.1 MB) Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) Collecting readthedocs-sphinx-ext<1.1 Downloading readthedocs_sphinx_ext-1.0.1-py2.py3-none-any.whl (14 kB) Collecting future Downloading future-0.18.2.tar.gz (829 kB) Collecting Jinja2>=2.3 Downloading Jinja2-2.11.1-py2.py3-none-any.whl (126 kB) Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.0.0-py2.py3-none-any.whl (97 kB) Collecting six>=1.5 Downloading six-1.14.0-py2.py3-none-any.whl (10 kB) Collecting imagesize Downloading imagesize-1.2.0-py2.py3-none-any.whl (4.8 kB) Collecting babel!=2.0,>=1.3 Downloading Babel-2.8.0-py2.py3-none-any.whl (8.6 MB) Collecting packaging Downloading packaging-20.3-py2.py3-none-any.whl (37 kB) Collecting sphinxcontrib-websupport Downloading sphinxcontrib_websupport-1.2.1-py2.py3-none-any.whl (39 kB) Collecting requests>=2.0.0 Downloading requests-2.23.0-py2.py3-none-any.whl (58 kB) Collecting MarkupSafe>=0.23 Downloading MarkupSafe-1.1.1-cp37-cp37m-manylinux1_x86_64.whl (27 kB) Collecting pytz>=2015.7 Downloading pytz-2019.3-py2.py3-none-any.whl (509 kB) Collecting pyparsing>=2.0.2 Downloading pyparsing-2.4.6-py2.py3-none-any.whl (67 kB) Collecting urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 Downloading urllib3-1.25.8-py2.py3-none-any.whl (125 kB) Collecting certifi>=2017.4.17 Downloading certifi-2019.11.28-py2.py3-none-any.whl (156 kB) Collecting chardet<4,>=3.0.2 Downloading chardet-3.0.4-py2.py3-none-any.whl (133 kB) Collecting idna<3,>=2.5 Downloading idna-2.9-py2.py3-none-any.whl (58 kB) Building wheels for collected packages: mock, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23754 sha256=c4067f651942e4377fba9fc4b994a19123200c7bfb3c20dec275d6110b5d736d Stored in directory: /tmp/pip-ephem-wheel-cache-3tj126pd/wheels/16/03/37/f0a64ab894c9102906f192db1a4071b7592292ad661563c69b Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491058 sha256=4d3f4d89a6bb88edfc06f967cfc118425ac597170a187782230a2164a7486730 Stored in directory: /tmp/pip-ephem-wheel-cache-3tj126pd/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0 Successfully built mock future Installing collected packages: Pygments, setuptools, docutils, mock, pillow, alabaster, future, commonmark, MarkupSafe, Jinja2, snowballstemmer, six, imagesize, pytz, babel, pyparsing, packaging, sphinxcontrib-websupport, urllib3, certifi, chardet, idna, requests, sphinx, recommonmark, sphinx-rtd-theme, readthedocs-sphinx-ext Attempting uninstall: setuptools Found existing installation: setuptools 46.1.3 Uninstalling setuptools-46.1.3: Successfully uninstalled setuptools-46.1.3 Successfully installed Jinja2-2.11.1 MarkupSafe-1.1.1 Pygments-2.3.1 alabaster-0.7.12 babel-2.8.0 certifi-2019.11.28 chardet-3.0.4 commonmark-0.8.1 docutils-0.14 future-0.18.2 idna-2.9 imagesize-1.2.0 mock-1.0.1 packaging-20.3 pillow-5.4.1 pyparsing-2.4.6 pytz-2019.3 readthedocs-sphinx-ext-1.0.1 recommonmark-0.5.0 requests-2.23.0 setuptools-41.0.1 six-1.14.0 snowballstemmer-2.0.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-websupport-1.2.1 urllib3-1.25.8 [rtd-command-info] start-time: 2020-03-26T06:32:54.326282Z, end-time: 2020-03-26T06:33:16.515895Z, duration: 22, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r requirements.txt Collecting cmake>=3.11.0 Downloading cmake-3.16.3-py3-none-manylinux2010_x86_64.whl (17.0 MB) Collecting cython>=0.29 Downloading Cython-0.29.16-cp37-cp37m-manylinux1_x86_64.whl (2.1 MB) Collecting numpy==1.16.* Downloading numpy-1.16.6-cp37-cp37m-manylinux1_x86_64.whl (17.3 MB) Requirement already satisfied: setuptools>=18.0.1 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 4)) (41.0.1) Collecting setuptools-scm>=1.5.4 Downloading setuptools_scm-3.5.0-py2.py3-none-any.whl (26 kB) Requirement already satisfied: wheel>=0.30 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 6)) (0.34.2) Collecting psutil Downloading psutil-5.7.0.tar.gz (449 kB) Building wheels for collected packages: psutil Building wheel for psutil (setup.py): started Building wheel for psutil (setup.py): finished with status 'done' Created wheel for psutil: filename=psutil-5.7.0-cp37-cp37m-linux_x86_64.whl size=276452 sha256=9e55b95250899b25f2789b97b0adee0524c37c48c261ec13c89ec6200f665adc Stored in directory: /tmp/pip-ephem-wheel-cache-hprxjr58/wheels/b6/e7/50/aee9cc966163d74430f13f208171dee22f11efa4a4a826661c Successfully built psutil Installing collected packages: cmake, cython, numpy, setuptools-scm, psutil Successfully installed cmake-3.16.3 cython-0.29.16 numpy-1.16.6 psutil-5.7.0 setuptools-scm-3.5.0 [rtd-command-info] start-time: 2020-03-26T06:33:16.676946Z, end-time: 2020-03-26T07:32:24.906696Z, duration: 3548, exit-code: 137 python ./setup.py install --force libtiledb_exists checking 'library_dirs': [] libtiledb_exists found: 'None' running install running bdist_egg GNU Make 4.1 Built for x86_64-pc-linux-gnu Copyright (C) 1988-2014 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. -- The C compiler identification is GNU 7.4.0 -- The CXX compiler identification is GNU 7.4.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Starting TileDB superbuild. -- Found Bzip2: /usr/lib/x86_64-linux-gnu/libbz2.so -- Could NOT find LZ4 (missing: LZ4_LIBRARIES LZ4_INCLUDE_DIR) -- Adding LZ4 as an external project -- Could NOT find Spdlog (missing: SPDLOG_INCLUDE_DIR) -- Adding Spdlog as an external project -- Found Zlib: /usr/lib/x86_64-linux-gnu/libz.so -- Could NOT find Zstd (missing: ZSTD_LIBRARIES ZSTD_INCLUDE_DIR) -- Adding Zstd as an external project -- Found OpenSSL: /usr/lib/x86_64-linux-gnu/libssl.so -- OpenSSL crypto: /usr/lib/x86_64-linux-gnu/libcrypto.so -- root: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/install;/usr/local/opt/openssl -- Could NOT find CURL (missing: CURL_LIBRARY CURL_INCLUDE_DIR) -- Could NOT find Curl (missing: CURL_LIBRARIES CURL_INCLUDE_DIR) -- Adding Curl as an external project CMake Warning at cmake/Modules/FindCurl_EP.cmake:106 (message): TileDB FindOpenSSL_EP did not set TILEDB_OPENSSL_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) CMake Warning at cmake/Modules/FindCurl_EP.cmake:118 (message): TileDB FindZlib_EP did not set TILEDB_ZLIB_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) -- Could NOT find AWSSDK -- Adding AWSSDK as an external project -- Could NOT find TBB (missing: TBB_LIBRARIES TBB_INCLUDE_DIR) -- Adding TBB as an external project -- Not found clang-tidy -- Not found clang-format -- Found Doxygen: /usr/bin/doxygen (found version "1.8.13") found components: doxygen dot -- Install prefix is /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/dist -- Configuring done -- Generating done -- Build files have been written to: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build Scanning dependencies of target ep_curl [ 1%] Creating directories for 'ep_curl' [ 3%] Performing download step (download, verify and extract) for 'ep_curl' -- ep_curl download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-download-*.log [ 5%] No patch step for 'ep_curl' [ 7%] No update step for 'ep_curl' [ 8%] Performing configure step for 'ep_curl' -- ep_curl configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-configure-*.log [ 10%] Performing build step for 'ep_curl' -- ep_curl build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-build-*.log [ 12%] Performing install step for 'ep_curl' -- ep_curl install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-install-*.log [ 14%] Completed 'ep_curl' [ 14%] Built target ep_curl Scanning dependencies of target ep_awssdk [ 16%] Creating directories for 'ep_awssdk' [ 17%] Performing download step (download, verify and extract) for 'ep_awssdk' -- ep_awssdk download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-download-*.log [ 19%] No patch step for 'ep_awssdk' [ 21%] No update step for 'ep_awssdk' [ 23%] Performing configure step for 'ep_awssdk' -- ep_awssdk configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-configure-*.log [ 25%] Performing build step for 'ep_awssdk' Command killed due to excessive memory consumption [rtd-command-info] start-time: 2020-03-26T07:32:15.439152Z, end-time: 2020-03-26T07:32:16.845754Z, duration: 1, exit-code: 0 git clone --no-single-branch --depth 50 https://github.com/TileDB-Inc/TileDB-Py.git . Cloning into '.'... [rtd-command-info] start-time: 2020-03-26T07:32:17.248989Z, end-time: 2020-03-26T07:32:17.558509Z, duration: 0, exit-code: 0 git checkout --force de2aff00b97498420199a9d16c8375df70e94780 Note: checking out 'de2aff00b97498420199a9d16c8375df70e94780'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at de2aff0 Add error check for libtiledb build validity in setup.py [rtd-command-info] start-time: 2020-03-26T07:32:17.716933Z, end-time: 2020-03-26T07:32:18.009568Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2020-03-26T07:32:19.427770Z, end-time: 2020-03-26T07:32:24.561241Z, duration: 5, exit-code: 0 python3.7 -mvirtualenv Using base prefix '/home/docs/.pyenv/versions/3.7.3' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2020-03-26T07:32:24.722244Z, end-time: 2020-03-26T07:32:25.683353Z, duration: 0, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip Requirement already up-to-date: pip in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (20.0.2) [rtd-command-info] start-time: 2020-03-26T07:32:25.840468Z, end-time: 2020-03-26T07:32:37.489075Z, duration: 11, exit-code: 0 python -m pip install --upgrade --no-cache-dir Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1 Collecting Pygments==2.3.1 Downloading Pygments-2.3.1-py2.py3-none-any.whl (849 kB) Collecting setuptools==41.0.1 Downloading setuptools-41.0.1-py2.py3-none-any.whl (575 kB) Collecting docutils==0.14 Downloading docutils-0.14-py3-none-any.whl (543 kB) Collecting mock==1.0.1 Downloading mock-1.0.1.tar.gz (818 kB) Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.5-py2.py3-none-any.whl (3.1 MB) Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) Collecting readthedocs-sphinx-ext<1.1 Downloading readthedocs_sphinx_ext-1.0.1-py2.py3-none-any.whl (14 kB) Collecting future Downloading future-0.18.2.tar.gz (829 kB) Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.0.0-py2.py3-none-any.whl (97 kB) Collecting imagesize Downloading imagesize-1.2.0-py2.py3-none-any.whl (4.8 kB) Collecting babel!=2.0,>=1.3 Downloading Babel-2.8.0-py2.py3-none-any.whl (8.6 MB) Collecting six>=1.5 Downloading six-1.14.0-py2.py3-none-any.whl (10 kB) Collecting sphinxcontrib-websupport Downloading sphinxcontrib_websupport-1.2.1-py2.py3-none-any.whl (39 kB) Collecting requests>=2.0.0 Downloading requests-2.23.0-py2.py3-none-any.whl (58 kB) Collecting packaging Downloading packaging-20.3-py2.py3-none-any.whl (37 kB) Collecting Jinja2>=2.3 Downloading Jinja2-2.11.1-py2.py3-none-any.whl (126 kB) Collecting pytz>=2015.7 Downloading pytz-2019.3-py2.py3-none-any.whl (509 kB) Collecting urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 Downloading urllib3-1.25.8-py2.py3-none-any.whl (125 kB) Collecting certifi>=2017.4.17 Downloading certifi-2019.11.28-py2.py3-none-any.whl (156 kB) Collecting idna<3,>=2.5 Downloading idna-2.9-py2.py3-none-any.whl (58 kB) Collecting chardet<4,>=3.0.2 Downloading chardet-3.0.4-py2.py3-none-any.whl (133 kB) Collecting pyparsing>=2.0.2 Downloading pyparsing-2.4.6-py2.py3-none-any.whl (67 kB) Collecting MarkupSafe>=0.23 Downloading MarkupSafe-1.1.1-cp37-cp37m-manylinux1_x86_64.whl (27 kB) Building wheels for collected packages: mock, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23754 sha256=6b58715ee98e345bc6482da584b7f00811fc34e887b46183c3488c1ab3c1261e Stored in directory: /tmp/pip-ephem-wheel-cache-53kw7vwk/wheels/16/03/37/f0a64ab894c9102906f192db1a4071b7592292ad661563c69b Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491058 sha256=4cf4bccd052e58a9497d122c992c8e99daddfeaa837bb17b15a92282306d27da Stored in directory: /tmp/pip-ephem-wheel-cache-53kw7vwk/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0 Successfully built mock future Installing collected packages: Pygments, setuptools, docutils, mock, pillow, alabaster, future, commonmark, snowballstemmer, imagesize, pytz, babel, six, sphinxcontrib-websupport, urllib3, certifi, idna, chardet, requests, pyparsing, packaging, MarkupSafe, Jinja2, sphinx, recommonmark, sphinx-rtd-theme, readthedocs-sphinx-ext Attempting uninstall: setuptools Found existing installation: setuptools 46.1.3 Uninstalling setuptools-46.1.3: Successfully uninstalled setuptools-46.1.3 Successfully installed Jinja2-2.11.1 MarkupSafe-1.1.1 Pygments-2.3.1 alabaster-0.7.12 babel-2.8.0 certifi-2019.11.28 chardet-3.0.4 commonmark-0.8.1 docutils-0.14 future-0.18.2 idna-2.9 imagesize-1.2.0 mock-1.0.1 packaging-20.3 pillow-5.4.1 pyparsing-2.4.6 pytz-2019.3 readthedocs-sphinx-ext-1.0.1 recommonmark-0.5.0 requests-2.23.0 setuptools-41.0.1 six-1.14.0 snowballstemmer-2.0.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-websupport-1.2.1 urllib3-1.25.8 [rtd-command-info] start-time: 2020-03-26T07:32:37.657108Z, end-time: 2020-03-26T07:32:49.283020Z, duration: 11, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r requirements.txt Collecting cmake>=3.11.0 Downloading cmake-3.16.3-py3-none-manylinux2010_x86_64.whl (17.0 MB) Collecting cython>=0.29 Downloading Cython-0.29.16-cp37-cp37m-manylinux1_x86_64.whl (2.1 MB) Collecting numpy==1.16.* Downloading numpy-1.16.6-cp37-cp37m-manylinux1_x86_64.whl (17.3 MB) Requirement already satisfied: setuptools>=18.0.1 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 4)) (41.0.1) Collecting setuptools-scm>=1.5.4 Downloading setuptools_scm-3.5.0-py2.py3-none-any.whl (26 kB) Requirement already satisfied: wheel>=0.30 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 6)) (0.34.2) Collecting psutil Downloading psutil-5.7.0.tar.gz (449 kB) Building wheels for collected packages: psutil Building wheel for psutil (setup.py): started Building wheel for psutil (setup.py): finished with status 'done' Created wheel for psutil: filename=psutil-5.7.0-cp37-cp37m-linux_x86_64.whl size=276459 sha256=d76ae69c3b7062219248852cdea61d318b4ef44893e461c4bba9c9de63f34ea0 Stored in directory: /tmp/pip-ephem-wheel-cache-van7r92i/wheels/b6/e7/50/aee9cc966163d74430f13f208171dee22f11efa4a4a826661c Successfully built psutil Installing collected packages: cmake, cython, numpy, setuptools-scm, psutil Successfully installed cmake-3.16.3 cython-0.29.16 numpy-1.16.6 psutil-5.7.0 setuptools-scm-3.5.0 [rtd-command-info] start-time: 2020-03-26T07:32:49.461081Z, end-time: 2020-03-26T08:32:21.232535Z, duration: 3571, exit-code: 137 python ./setup.py install --force libtiledb_exists checking 'library_dirs': [] libtiledb_exists found: 'None' running install running bdist_egg GNU Make 4.1 Built for x86_64-pc-linux-gnu Copyright (C) 1988-2014 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. -- The C compiler identification is GNU 7.4.0 -- The CXX compiler identification is GNU 7.4.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Starting TileDB superbuild. -- Found Bzip2: /usr/lib/x86_64-linux-gnu/libbz2.so -- Could NOT find LZ4 (missing: LZ4_LIBRARIES LZ4_INCLUDE_DIR) -- Adding LZ4 as an external project -- Could NOT find Spdlog (missing: SPDLOG_INCLUDE_DIR) -- Adding Spdlog as an external project -- Found Zlib: /usr/lib/x86_64-linux-gnu/libz.so -- Could NOT find Zstd (missing: ZSTD_LIBRARIES ZSTD_INCLUDE_DIR) -- Adding Zstd as an external project -- Found OpenSSL: /usr/lib/x86_64-linux-gnu/libssl.so -- OpenSSL crypto: /usr/lib/x86_64-linux-gnu/libcrypto.so -- root: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/install;/usr/local/opt/openssl -- Could NOT find CURL (missing: CURL_LIBRARY CURL_INCLUDE_DIR) -- Could NOT find Curl (missing: CURL_LIBRARIES CURL_INCLUDE_DIR) -- Adding Curl as an external project CMake Warning at cmake/Modules/FindCurl_EP.cmake:106 (message): TileDB FindOpenSSL_EP did not set TILEDB_OPENSSL_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) CMake Warning at cmake/Modules/FindCurl_EP.cmake:118 (message): TileDB FindZlib_EP did not set TILEDB_ZLIB_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) -- Could NOT find AWSSDK -- Adding AWSSDK as an external project -- Could NOT find TBB (missing: TBB_LIBRARIES TBB_INCLUDE_DIR) -- Adding TBB as an external project -- Not found clang-tidy -- Not found clang-format -- Found Doxygen: /usr/bin/doxygen (found version "1.8.13") found components: doxygen dot -- Install prefix is /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/dist -- Configuring done -- Generating done -- Build files have been written to: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build Scanning dependencies of target ep_spdlog [ 1%] Creating directories for 'ep_spdlog' [ 3%] Performing download step (download, verify and extract) for 'ep_spdlog' -- ep_spdlog download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_spdlog-stamp/ep_spdlog-download-*.log [ 5%] No patch step for 'ep_spdlog' [ 7%] No update step for 'ep_spdlog' [ 8%] No configure step for 'ep_spdlog' [ 10%] No build step for 'ep_spdlog' [ 12%] No install step for 'ep_spdlog' [ 14%] Completed 'ep_spdlog' [ 14%] Built target ep_spdlog Scanning dependencies of target ep_curl [ 16%] Creating directories for 'ep_curl' [ 17%] Performing download step (download, verify and extract) for 'ep_curl' -- ep_curl download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-download-*.log [ 19%] No patch step for 'ep_curl' [ 21%] No update step for 'ep_curl' [ 23%] Performing configure step for 'ep_curl' -- ep_curl configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-configure-*.log [ 25%] Performing build step for 'ep_curl' -- ep_curl build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-build-*.log [ 26%] Performing install step for 'ep_curl' -- ep_curl install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-install-*.log [ 28%] Completed 'ep_curl' [ 28%] Built target ep_curl Scanning dependencies of target ep_lz4 [ 30%] Creating directories for 'ep_lz4' [ 32%] Performing download step (download, verify and extract) for 'ep_lz4' -- ep_lz4 download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_lz4-stamp/ep_lz4-download-*.log [ 33%] No patch step for 'ep_lz4' [ 35%] No update step for 'ep_lz4' [ 37%] Performing configure step for 'ep_lz4' -- ep_lz4 configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_lz4-stamp/ep_lz4-configure-*.log [ 39%] Performing build step for 'ep_lz4' -- ep_lz4 build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_lz4-stamp/ep_lz4-build-*.log [ 41%] Performing install step for 'ep_lz4' -- ep_lz4 install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_lz4-stamp/ep_lz4-install-*.log [ 42%] Completed 'ep_lz4' [ 42%] Built target ep_lz4 Scanning dependencies of target ep_zstd [ 44%] Creating directories for 'ep_zstd' [ 46%] Performing download step (download, verify and extract) for 'ep_zstd' -- ep_zstd download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-download-*.log [ 48%] No patch step for 'ep_zstd' [ 50%] No update step for 'ep_zstd' [ 51%] Performing configure step for 'ep_zstd' -- ep_zstd configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-configure-*.log [ 53%] Performing build step for 'ep_zstd' -- ep_zstd build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-build-*.log [ 55%] Performing install step for 'ep_zstd' -- ep_zstd install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-install-*.log [ 57%] Completed 'ep_zstd' [ 57%] Built target ep_zstd Scanning dependencies of target ep_tbb [ 58%] Creating directories for 'ep_tbb' [ 60%] Performing download step (download, verify and extract) for 'ep_tbb' -- ep_tbb download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_tbb-stamp/ep_tbb-download-*.log [ 62%] No patch step for 'ep_tbb' [ 64%] No update step for 'ep_tbb' [ 66%] No configure step for 'ep_tbb' [ 67%] No build step for 'ep_tbb' [ 69%] No install step for 'ep_tbb' [ 71%] Completed 'ep_tbb' [ 71%] Built target ep_tbb Scanning dependencies of target ep_awssdk [ 73%] Creating directories for 'ep_awssdk' [ 75%] Performing download step (download, verify and extract) for 'ep_awssdk' -- ep_awssdk download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-download-*.log [ 76%] No patch step for 'ep_awssdk' [ 78%] No update step for 'ep_awssdk' [ 80%] Performing configure step for 'ep_awssdk' -- ep_awssdk configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-configure-*.log [ 82%] Performing build step for 'ep_awssdk' Command killed due to excessive memory consumption [rtd-command-info] start-time: 2020-03-26T08:32:15.925229Z, end-time: 2020-03-26T08:32:19.648929Z, duration: 3, exit-code: 0 git clone --no-single-branch --depth 50 https://github.com/TileDB-Inc/TileDB-Py.git . Cloning into '.'... [rtd-command-info] start-time: 2020-03-26T08:32:20.106067Z, end-time: 2020-03-26T08:32:20.432146Z, duration: 0, exit-code: 0 git checkout --force de2aff00b97498420199a9d16c8375df70e94780 Note: checking out 'de2aff00b97498420199a9d16c8375df70e94780'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at de2aff0 Add error check for libtiledb build validity in setup.py [rtd-command-info] start-time: 2020-03-26T08:32:20.585843Z, end-time: 2020-03-26T08:32:20.908250Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2020-03-26T08:32:22.361872Z, end-time: 2020-03-26T08:32:27.595459Z, duration: 5, exit-code: 0 python3.7 -mvirtualenv Using base prefix '/home/docs/.pyenv/versions/3.7.3' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2020-03-26T08:32:27.754241Z, end-time: 2020-03-26T08:32:28.777404Z, duration: 1, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip Requirement already up-to-date: pip in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (20.0.2) [rtd-command-info] start-time: 2020-03-26T08:32:28.942990Z, end-time: 2020-03-26T08:32:41.405390Z, duration: 12, exit-code: 0 python -m pip install --upgrade --no-cache-dir Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1 Collecting Pygments==2.3.1 Downloading Pygments-2.3.1-py2.py3-none-any.whl (849 kB) Collecting setuptools==41.0.1 Downloading setuptools-41.0.1-py2.py3-none-any.whl (575 kB) Collecting docutils==0.14 Downloading docutils-0.14-py3-none-any.whl (543 kB) Collecting mock==1.0.1 Downloading mock-1.0.1.tar.gz (818 kB) Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.5-py2.py3-none-any.whl (3.1 MB) Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) Collecting readthedocs-sphinx-ext<1.1 Downloading readthedocs_sphinx_ext-1.0.1-py2.py3-none-any.whl (14 kB) Collecting future Downloading future-0.18.2.tar.gz (829 kB) Collecting imagesize Downloading imagesize-1.2.0-py2.py3-none-any.whl (4.8 kB) Collecting babel!=2.0,>=1.3 Downloading Babel-2.8.0-py2.py3-none-any.whl (8.6 MB) Collecting Jinja2>=2.3 Downloading Jinja2-2.11.1-py2.py3-none-any.whl (126 kB) Collecting six>=1.5 Downloading six-1.14.0-py2.py3-none-any.whl (10 kB) Collecting packaging Downloading packaging-20.3-py2.py3-none-any.whl (37 kB) Collecting sphinxcontrib-websupport Downloading sphinxcontrib_websupport-1.2.1-py2.py3-none-any.whl (39 kB) Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.0.0-py2.py3-none-any.whl (97 kB) Collecting requests>=2.0.0 Downloading requests-2.23.0-py2.py3-none-any.whl (58 kB) Collecting pytz>=2015.7 Downloading pytz-2019.3-py2.py3-none-any.whl (509 kB) Collecting MarkupSafe>=0.23 Downloading MarkupSafe-1.1.1-cp37-cp37m-manylinux1_x86_64.whl (27 kB) Collecting pyparsing>=2.0.2 Downloading pyparsing-2.4.6-py2.py3-none-any.whl (67 kB) Collecting urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 Downloading urllib3-1.25.8-py2.py3-none-any.whl (125 kB) Collecting certifi>=2017.4.17 Downloading certifi-2019.11.28-py2.py3-none-any.whl (156 kB) Collecting chardet<4,>=3.0.2 Downloading chardet-3.0.4-py2.py3-none-any.whl (133 kB) Collecting idna<3,>=2.5 Downloading idna-2.9-py2.py3-none-any.whl (58 kB) Building wheels for collected packages: mock, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23754 sha256=2863710ba57e40465a0499d46bda26b1833d70636659dc64d9291f83c6913512 Stored in directory: /tmp/pip-ephem-wheel-cache-_n5of2vh/wheels/16/03/37/f0a64ab894c9102906f192db1a4071b7592292ad661563c69b Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491058 sha256=b9335d1497a7d7221f60109d62beac4f35e2e834b878725ad7415b539b83acd1 Stored in directory: /tmp/pip-ephem-wheel-cache-_n5of2vh/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0 Successfully built mock future Installing collected packages: Pygments, setuptools, docutils, mock, pillow, alabaster, future, commonmark, imagesize, pytz, babel, MarkupSafe, Jinja2, six, pyparsing, packaging, sphinxcontrib-websupport, snowballstemmer, urllib3, certifi, chardet, idna, requests, sphinx, recommonmark, sphinx-rtd-theme, readthedocs-sphinx-ext Attempting uninstall: setuptools Found existing installation: setuptools 46.1.3 Uninstalling setuptools-46.1.3: Successfully uninstalled setuptools-46.1.3 Successfully installed Jinja2-2.11.1 MarkupSafe-1.1.1 Pygments-2.3.1 alabaster-0.7.12 babel-2.8.0 certifi-2019.11.28 chardet-3.0.4 commonmark-0.8.1 docutils-0.14 future-0.18.2 idna-2.9 imagesize-1.2.0 mock-1.0.1 packaging-20.3 pillow-5.4.1 pyparsing-2.4.6 pytz-2019.3 readthedocs-sphinx-ext-1.0.1 recommonmark-0.5.0 requests-2.23.0 setuptools-41.0.1 six-1.14.0 snowballstemmer-2.0.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-websupport-1.2.1 urllib3-1.25.8 [rtd-command-info] start-time: 2020-03-26T08:32:41.568769Z, end-time: 2020-03-26T08:33:03.683792Z, duration: 22, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r requirements.txt Collecting cmake>=3.11.0 Downloading cmake-3.16.3-py3-none-manylinux2010_x86_64.whl (17.0 MB) Collecting cython>=0.29 Downloading Cython-0.29.16-cp37-cp37m-manylinux1_x86_64.whl (2.1 MB) Collecting numpy==1.16.* Downloading numpy-1.16.6-cp37-cp37m-manylinux1_x86_64.whl (17.3 MB) Requirement already satisfied: setuptools>=18.0.1 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 4)) (41.0.1) Collecting setuptools-scm>=1.5.4 Downloading setuptools_scm-3.5.0-py2.py3-none-any.whl (26 kB) Requirement already satisfied: wheel>=0.30 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 6)) (0.34.2) Collecting psutil Downloading psutil-5.7.0.tar.gz (449 kB) Building wheels for collected packages: psutil Building wheel for psutil (setup.py): started Building wheel for psutil (setup.py): finished with status 'done' Created wheel for psutil: filename=psutil-5.7.0-cp37-cp37m-linux_x86_64.whl size=276461 sha256=d71b1338b8fc78d1f5a1f239c0ee017d7223b4f0ff8371d81b4f4e7754614fe3 Stored in directory: /tmp/pip-ephem-wheel-cache-xyqks47a/wheels/b6/e7/50/aee9cc966163d74430f13f208171dee22f11efa4a4a826661c Successfully built psutil Installing collected packages: cmake, cython, numpy, setuptools-scm, psutil Successfully installed cmake-3.16.3 cython-0.29.16 numpy-1.16.6 psutil-5.7.0 setuptools-scm-3.5.0 [rtd-command-info] start-time: 2020-03-26T08:33:03.886447Z, end-time: 2020-03-26T09:32:24.820311Z, duration: 3560, exit-code: 137 python ./setup.py install --force libtiledb_exists checking 'library_dirs': [] libtiledb_exists found: 'None' running install running bdist_egg GNU Make 4.1 Built for x86_64-pc-linux-gnu Copyright (C) 1988-2014 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. -- The C compiler identification is GNU 7.4.0 -- The CXX compiler identification is GNU 7.4.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Starting TileDB superbuild. -- Found Bzip2: /usr/lib/x86_64-linux-gnu/libbz2.so -- Could NOT find LZ4 (missing: LZ4_LIBRARIES LZ4_INCLUDE_DIR) -- Adding LZ4 as an external project -- Could NOT find Spdlog (missing: SPDLOG_INCLUDE_DIR) -- Adding Spdlog as an external project -- Found Zlib: /usr/lib/x86_64-linux-gnu/libz.so -- Could NOT find Zstd (missing: ZSTD_LIBRARIES ZSTD_INCLUDE_DIR) -- Adding Zstd as an external project -- Found OpenSSL: /usr/lib/x86_64-linux-gnu/libssl.so -- OpenSSL crypto: /usr/lib/x86_64-linux-gnu/libcrypto.so -- root: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/install;/usr/local/opt/openssl -- Could NOT find CURL (missing: CURL_LIBRARY CURL_INCLUDE_DIR) -- Could NOT find Curl (missing: CURL_LIBRARIES CURL_INCLUDE_DIR) -- Adding Curl as an external project CMake Warning at cmake/Modules/FindCurl_EP.cmake:106 (message): TileDB FindOpenSSL_EP did not set TILEDB_OPENSSL_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) CMake Warning at cmake/Modules/FindCurl_EP.cmake:118 (message): TileDB FindZlib_EP did not set TILEDB_ZLIB_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) -- Could NOT find AWSSDK -- Adding AWSSDK as an external project -- Could NOT find TBB (missing: TBB_LIBRARIES TBB_INCLUDE_DIR) -- Adding TBB as an external project -- Not found clang-tidy -- Not found clang-format -- Found Doxygen: /usr/bin/doxygen (found version "1.8.13") found components: doxygen dot -- Install prefix is /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/dist -- Configuring done -- Generating done -- Build files have been written to: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build Scanning dependencies of target ep_curl [ 1%] Creating directories for 'ep_curl' [ 3%] Performing download step (download, verify and extract) for 'ep_curl' -- ep_curl download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-download-*.log [ 5%] No patch step for 'ep_curl' [ 7%] No update step for 'ep_curl' [ 8%] Performing configure step for 'ep_curl' -- ep_curl configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-configure-*.log [ 10%] Performing build step for 'ep_curl' -- ep_curl build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-build-*.log [ 12%] Performing install step for 'ep_curl' -- ep_curl install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-install-*.log [ 14%] Completed 'ep_curl' [ 14%] Built target ep_curl Scanning dependencies of target ep_lz4 [ 16%] Creating directories for 'ep_lz4' [ 17%] Performing download step (download, verify and extract) for 'ep_lz4' -- ep_lz4 download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_lz4-stamp/ep_lz4-download-*.log [ 19%] No patch step for 'ep_lz4' [ 21%] No update step for 'ep_lz4' [ 23%] Performing configure step for 'ep_lz4' -- ep_lz4 configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_lz4-stamp/ep_lz4-configure-*.log [ 25%] Performing build step for 'ep_lz4' -- ep_lz4 build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_lz4-stamp/ep_lz4-build-*.log [ 26%] Performing install step for 'ep_lz4' -- ep_lz4 install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_lz4-stamp/ep_lz4-install-*.log [ 28%] Completed 'ep_lz4' [ 28%] Built target ep_lz4 Scanning dependencies of target ep_zstd [ 30%] Creating directories for 'ep_zstd' [ 32%] Performing download step (download, verify and extract) for 'ep_zstd' -- ep_zstd download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-download-*.log [ 33%] No patch step for 'ep_zstd' [ 35%] No update step for 'ep_zstd' [ 37%] Performing configure step for 'ep_zstd' -- ep_zstd configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-configure-*.log [ 39%] Performing build step for 'ep_zstd' -- ep_zstd build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-build-*.log [ 41%] Performing install step for 'ep_zstd' -- ep_zstd install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-install-*.log [ 42%] Completed 'ep_zstd' [ 42%] Built target ep_zstd Scanning dependencies of target ep_tbb [ 44%] Creating directories for 'ep_tbb' [ 46%] Performing download step (download, verify and extract) for 'ep_tbb' -- ep_tbb download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_tbb-stamp/ep_tbb-download-*.log [ 48%] No patch step for 'ep_tbb' [ 50%] No update step for 'ep_tbb' [ 51%] No configure step for 'ep_tbb' [ 53%] No build step for 'ep_tbb' [ 55%] No install step for 'ep_tbb' [ 57%] Completed 'ep_tbb' [ 57%] Built target ep_tbb Scanning dependencies of target ep_awssdk [ 58%] Creating directories for 'ep_awssdk' [ 60%] Performing download step (download, verify and extract) for 'ep_awssdk' -- ep_awssdk download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-download-*.log [ 62%] No patch step for 'ep_awssdk' [ 64%] No update step for 'ep_awssdk' [ 66%] Performing configure step for 'ep_awssdk' -- ep_awssdk configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-configure-*.log [ 67%] Performing build step for 'ep_awssdk' Command killed due to excessive memory consumption [rtd-command-info] start-time: 2020-03-26T09:32:16.358241Z, end-time: 2020-03-26T09:32:17.643520Z, duration: 1, exit-code: 0 git clone --no-single-branch --depth 50 https://github.com/TileDB-Inc/TileDB-Py.git . Cloning into '.'... [rtd-command-info] start-time: 2020-03-26T09:32:18.583149Z, end-time: 2020-03-26T09:32:18.911790Z, duration: 0, exit-code: 0 git checkout --force de2aff00b97498420199a9d16c8375df70e94780 Note: checking out 'de2aff00b97498420199a9d16c8375df70e94780'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at de2aff0 Add error check for libtiledb build validity in setup.py [rtd-command-info] start-time: 2020-03-26T09:32:19.278783Z, end-time: 2020-03-26T09:32:19.612675Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2020-03-26T09:32:21.051778Z, end-time: 2020-03-26T09:32:26.369369Z, duration: 5, exit-code: 0 python3.7 -mvirtualenv Using base prefix '/home/docs/.pyenv/versions/3.7.3' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2020-03-26T09:32:26.528922Z, end-time: 2020-03-26T09:32:27.563203Z, duration: 1, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip Requirement already up-to-date: pip in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (20.0.2) [rtd-command-info] start-time: 2020-03-26T09:32:27.721348Z, end-time: 2020-03-26T09:32:39.551388Z, duration: 11, exit-code: 0 python -m pip install --upgrade --no-cache-dir Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1 Collecting Pygments==2.3.1 Downloading Pygments-2.3.1-py2.py3-none-any.whl (849 kB) Collecting setuptools==41.0.1 Downloading setuptools-41.0.1-py2.py3-none-any.whl (575 kB) Collecting docutils==0.14 Downloading docutils-0.14-py3-none-any.whl (543 kB) Collecting mock==1.0.1 Downloading mock-1.0.1.tar.gz (818 kB) Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.5-py2.py3-none-any.whl (3.1 MB) Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) Collecting readthedocs-sphinx-ext<1.1 Downloading readthedocs_sphinx_ext-1.0.1-py2.py3-none-any.whl (14 kB) Collecting future Downloading future-0.18.2.tar.gz (829 kB) Collecting requests>=2.0.0 Downloading requests-2.23.0-py2.py3-none-any.whl (58 kB) Collecting imagesize Downloading imagesize-1.2.0-py2.py3-none-any.whl (4.8 kB) Collecting sphinxcontrib-websupport Downloading sphinxcontrib_websupport-1.2.1-py2.py3-none-any.whl (39 kB) Collecting babel!=2.0,>=1.3 Downloading Babel-2.8.0-py2.py3-none-any.whl (8.6 MB) Collecting six>=1.5 Downloading six-1.14.0-py2.py3-none-any.whl (10 kB) Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.0.0-py2.py3-none-any.whl (97 kB) Collecting packaging Downloading packaging-20.3-py2.py3-none-any.whl (37 kB) Collecting Jinja2>=2.3 Downloading Jinja2-2.11.1-py2.py3-none-any.whl (126 kB) Collecting chardet<4,>=3.0.2 Downloading chardet-3.0.4-py2.py3-none-any.whl (133 kB) Collecting idna<3,>=2.5 Downloading idna-2.9-py2.py3-none-any.whl (58 kB) Collecting certifi>=2017.4.17 Downloading certifi-2019.11.28-py2.py3-none-any.whl (156 kB) Collecting urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 Downloading urllib3-1.25.8-py2.py3-none-any.whl (125 kB) Collecting pytz>=2015.7 Downloading pytz-2019.3-py2.py3-none-any.whl (509 kB) Collecting pyparsing>=2.0.2 Downloading pyparsing-2.4.6-py2.py3-none-any.whl (67 kB) Collecting MarkupSafe>=0.23 Downloading MarkupSafe-1.1.1-cp37-cp37m-manylinux1_x86_64.whl (27 kB) Building wheels for collected packages: mock, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23754 sha256=c3f32840ad68cc5bd8be1eb7e2a3a59ed47f401779555db761bcc87fca536f36 Stored in directory: /tmp/pip-ephem-wheel-cache-lnqeo687/wheels/16/03/37/f0a64ab894c9102906f192db1a4071b7592292ad661563c69b Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491058 sha256=66670773188ac91dbf4d153d0f8d7bcfe3774c50cd1dc8dbc26fe1eebf5982e5 Stored in directory: /tmp/pip-ephem-wheel-cache-lnqeo687/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0 Successfully built mock future Installing collected packages: Pygments, setuptools, docutils, mock, pillow, alabaster, future, commonmark, chardet, idna, certifi, urllib3, requests, imagesize, sphinxcontrib-websupport, pytz, babel, six, snowballstemmer, pyparsing, packaging, MarkupSafe, Jinja2, sphinx, recommonmark, sphinx-rtd-theme, readthedocs-sphinx-ext Attempting uninstall: setuptools Found existing installation: setuptools 46.1.3 Uninstalling setuptools-46.1.3: Successfully uninstalled setuptools-46.1.3 Successfully installed Jinja2-2.11.1 MarkupSafe-1.1.1 Pygments-2.3.1 alabaster-0.7.12 babel-2.8.0 certifi-2019.11.28 chardet-3.0.4 commonmark-0.8.1 docutils-0.14 future-0.18.2 idna-2.9 imagesize-1.2.0 mock-1.0.1 packaging-20.3 pillow-5.4.1 pyparsing-2.4.6 pytz-2019.3 readthedocs-sphinx-ext-1.0.1 recommonmark-0.5.0 requests-2.23.0 setuptools-41.0.1 six-1.14.0 snowballstemmer-2.0.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-websupport-1.2.1 urllib3-1.25.8 [rtd-command-info] start-time: 2020-03-26T09:32:39.720069Z, end-time: 2020-03-26T09:32:58.676277Z, duration: 18, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r requirements.txt Collecting cmake>=3.11.0 Downloading cmake-3.16.3-py3-none-manylinux2010_x86_64.whl (17.0 MB) Collecting cython>=0.29 Downloading Cython-0.29.16-cp37-cp37m-manylinux1_x86_64.whl (2.1 MB) Collecting numpy==1.16.* Downloading numpy-1.16.6-cp37-cp37m-manylinux1_x86_64.whl (17.3 MB) Requirement already satisfied: setuptools>=18.0.1 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 4)) (41.0.1) Collecting setuptools-scm>=1.5.4 Downloading setuptools_scm-3.5.0-py2.py3-none-any.whl (26 kB) Requirement already satisfied: wheel>=0.30 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 6)) (0.34.2) Collecting psutil Downloading psutil-5.7.0.tar.gz (449 kB) Building wheels for collected packages: psutil Building wheel for psutil (setup.py): started Building wheel for psutil (setup.py): finished with status 'done' Created wheel for psutil: filename=psutil-5.7.0-cp37-cp37m-linux_x86_64.whl size=276461 sha256=79ec2293f3ba5c8e1d5a4a2bb729e7c550a970955fcdb7e2c70c713c06c1e1b2 Stored in directory: /tmp/pip-ephem-wheel-cache-b4ij1ng5/wheels/b6/e7/50/aee9cc966163d74430f13f208171dee22f11efa4a4a826661c Successfully built psutil Installing collected packages: cmake, cython, numpy, setuptools-scm, psutil Successfully installed cmake-3.16.3 cython-0.29.16 numpy-1.16.6 psutil-5.7.0 setuptools-scm-3.5.0 [rtd-command-info] start-time: 2020-03-26T09:32:58.832122Z, end-time: 2020-03-26T10:32:23.957866Z, duration: 3565, exit-code: 137 python ./setup.py install --force libtiledb_exists checking 'library_dirs': [] libtiledb_exists found: 'None' running install running bdist_egg GNU Make 4.1 Built for x86_64-pc-linux-gnu Copyright (C) 1988-2014 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. -- The C compiler identification is GNU 7.4.0 -- The CXX compiler identification is GNU 7.4.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Starting TileDB superbuild. -- Found Bzip2: /usr/lib/x86_64-linux-gnu/libbz2.so -- Could NOT find LZ4 (missing: LZ4_LIBRARIES LZ4_INCLUDE_DIR) -- Adding LZ4 as an external project -- Could NOT find Spdlog (missing: SPDLOG_INCLUDE_DIR) -- Adding Spdlog as an external project -- Found Zlib: /usr/lib/x86_64-linux-gnu/libz.so -- Could NOT find Zstd (missing: ZSTD_LIBRARIES ZSTD_INCLUDE_DIR) -- Adding Zstd as an external project -- Found OpenSSL: /usr/lib/x86_64-linux-gnu/libssl.so -- OpenSSL crypto: /usr/lib/x86_64-linux-gnu/libcrypto.so -- root: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/install;/usr/local/opt/openssl -- Could NOT find CURL (missing: CURL_LIBRARY CURL_INCLUDE_DIR) -- Could NOT find Curl (missing: CURL_LIBRARIES CURL_INCLUDE_DIR) -- Adding Curl as an external project CMake Warning at cmake/Modules/FindCurl_EP.cmake:106 (message): TileDB FindOpenSSL_EP did not set TILEDB_OPENSSL_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) CMake Warning at cmake/Modules/FindCurl_EP.cmake:118 (message): TileDB FindZlib_EP did not set TILEDB_ZLIB_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) -- Could NOT find AWSSDK -- Adding AWSSDK as an external project -- Could NOT find TBB (missing: TBB_LIBRARIES TBB_INCLUDE_DIR) -- Adding TBB as an external project -- Not found clang-tidy -- Not found clang-format -- Found Doxygen: /usr/bin/doxygen (found version "1.8.13") found components: doxygen dot -- Install prefix is /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/dist -- Configuring done -- Generating done -- Build files have been written to: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build Scanning dependencies of target ep_curl [ 1%] Creating directories for 'ep_curl' [ 3%] Performing download step (download, verify and extract) for 'ep_curl' -- ep_curl download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-download-*.log [ 5%] No patch step for 'ep_curl' [ 7%] No update step for 'ep_curl' [ 8%] Performing configure step for 'ep_curl' -- ep_curl configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-configure-*.log [ 10%] Performing build step for 'ep_curl' -- ep_curl build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-build-*.log [ 12%] Performing install step for 'ep_curl' -- ep_curl install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-install-*.log [ 14%] Completed 'ep_curl' [ 14%] Built target ep_curl Scanning dependencies of target ep_awssdk [ 16%] Creating directories for 'ep_awssdk' [ 17%] Performing download step (download, verify and extract) for 'ep_awssdk' -- ep_awssdk download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-download-*.log [ 19%] No patch step for 'ep_awssdk' [ 21%] No update step for 'ep_awssdk' [ 23%] Performing configure step for 'ep_awssdk' -- ep_awssdk configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-configure-*.log [ 25%] Performing build step for 'ep_awssdk' Command killed due to excessive memory consumption [rtd-command-info] start-time: 2020-03-26T10:32:16.813727Z, end-time: 2020-03-26T10:32:18.222651Z, duration: 1, exit-code: 0 git clone --no-single-branch --depth 50 https://github.com/TileDB-Inc/TileDB-Py.git . Cloning into '.'... [rtd-command-info] start-time: 2020-03-26T10:32:18.645170Z, end-time: 2020-03-26T10:32:18.975004Z, duration: 0, exit-code: 0 git checkout --force de2aff00b97498420199a9d16c8375df70e94780 Note: checking out 'de2aff00b97498420199a9d16c8375df70e94780'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at de2aff0 Add error check for libtiledb build validity in setup.py [rtd-command-info] start-time: 2020-03-26T10:32:19.563765Z, end-time: 2020-03-26T10:32:19.890879Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2020-03-26T10:32:21.373034Z, end-time: 2020-03-26T10:32:26.202599Z, duration: 4, exit-code: 0 python3.7 -mvirtualenv Using base prefix '/home/docs/.pyenv/versions/3.7.3' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2020-03-26T10:32:26.364487Z, end-time: 2020-03-26T10:32:27.397110Z, duration: 1, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip Requirement already up-to-date: pip in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (20.0.2) [rtd-command-info] start-time: 2020-03-26T10:32:27.556478Z, end-time: 2020-03-26T10:32:39.427846Z, duration: 11, exit-code: 0 python -m pip install --upgrade --no-cache-dir Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1 Collecting Pygments==2.3.1 Downloading Pygments-2.3.1-py2.py3-none-any.whl (849 kB) Collecting setuptools==41.0.1 Downloading setuptools-41.0.1-py2.py3-none-any.whl (575 kB) Collecting docutils==0.14 Downloading docutils-0.14-py3-none-any.whl (543 kB) Collecting mock==1.0.1 Downloading mock-1.0.1.tar.gz (818 kB) Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.5-py2.py3-none-any.whl (3.1 MB) Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) Collecting readthedocs-sphinx-ext<1.1 Downloading readthedocs_sphinx_ext-1.0.1-py2.py3-none-any.whl (14 kB) Collecting future Downloading future-0.18.2.tar.gz (829 kB) Collecting requests>=2.0.0 Downloading requests-2.23.0-py2.py3-none-any.whl (58 kB) Collecting packaging Downloading packaging-20.3-py2.py3-none-any.whl (37 kB) Collecting sphinxcontrib-websupport Downloading sphinxcontrib_websupport-1.2.1-py2.py3-none-any.whl (39 kB) Collecting six>=1.5 Downloading six-1.14.0-py2.py3-none-any.whl (10 kB) Collecting Jinja2>=2.3 Downloading Jinja2-2.11.1-py2.py3-none-any.whl (126 kB) Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.0.0-py2.py3-none-any.whl (97 kB) Collecting imagesize Downloading imagesize-1.2.0-py2.py3-none-any.whl (4.8 kB) Collecting babel!=2.0,>=1.3 Downloading Babel-2.8.0-py2.py3-none-any.whl (8.6 MB) Collecting urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 Downloading urllib3-1.25.8-py2.py3-none-any.whl (125 kB) Collecting certifi>=2017.4.17 Downloading certifi-2019.11.28-py2.py3-none-any.whl (156 kB) Collecting idna<3,>=2.5 Downloading idna-2.9-py2.py3-none-any.whl (58 kB) Collecting chardet<4,>=3.0.2 Downloading chardet-3.0.4-py2.py3-none-any.whl (133 kB) Collecting pyparsing>=2.0.2 Downloading pyparsing-2.4.6-py2.py3-none-any.whl (67 kB) Collecting MarkupSafe>=0.23 Downloading MarkupSafe-1.1.1-cp37-cp37m-manylinux1_x86_64.whl (27 kB) Collecting pytz>=2015.7 Downloading pytz-2019.3-py2.py3-none-any.whl (509 kB) Building wheels for collected packages: mock, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23754 sha256=344d45e3c747c16815ba744565274610e3dbeb6e5298e559eb4db3b19d8bb997 Stored in directory: /tmp/pip-ephem-wheel-cache-hx2de_ck/wheels/16/03/37/f0a64ab894c9102906f192db1a4071b7592292ad661563c69b Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491058 sha256=b86c1b25c2317c43d83338dfa1fb77da3a103709b57819a4595a7d9b08c33fc3 Stored in directory: /tmp/pip-ephem-wheel-cache-hx2de_ck/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0 Successfully built mock future Installing collected packages: Pygments, setuptools, docutils, mock, pillow, alabaster, future, commonmark, urllib3, certifi, idna, chardet, requests, six, pyparsing, packaging, sphinxcontrib-websupport, MarkupSafe, Jinja2, snowballstemmer, imagesize, pytz, babel, sphinx, recommonmark, sphinx-rtd-theme, readthedocs-sphinx-ext Attempting uninstall: setuptools Found existing installation: setuptools 46.1.3 Uninstalling setuptools-46.1.3: Successfully uninstalled setuptools-46.1.3 Successfully installed Jinja2-2.11.1 MarkupSafe-1.1.1 Pygments-2.3.1 alabaster-0.7.12 babel-2.8.0 certifi-2019.11.28 chardet-3.0.4 commonmark-0.8.1 docutils-0.14 future-0.18.2 idna-2.9 imagesize-1.2.0 mock-1.0.1 packaging-20.3 pillow-5.4.1 pyparsing-2.4.6 pytz-2019.3 readthedocs-sphinx-ext-1.0.1 recommonmark-0.5.0 requests-2.23.0 setuptools-41.0.1 six-1.14.0 snowballstemmer-2.0.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-websupport-1.2.1 urllib3-1.25.8 [rtd-command-info] start-time: 2020-03-26T10:32:39.589603Z, end-time: 2020-03-26T10:32:52.237700Z, duration: 12, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r requirements.txt Collecting cmake>=3.11.0 Downloading cmake-3.16.3-py3-none-manylinux2010_x86_64.whl (17.0 MB) Collecting cython>=0.29 Downloading Cython-0.29.16-cp37-cp37m-manylinux1_x86_64.whl (2.1 MB) Collecting numpy==1.16.* Downloading numpy-1.16.6-cp37-cp37m-manylinux1_x86_64.whl (17.3 MB) Requirement already satisfied: setuptools>=18.0.1 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 4)) (41.0.1) Collecting setuptools-scm>=1.5.4 Downloading setuptools_scm-3.5.0-py2.py3-none-any.whl (26 kB) Requirement already satisfied: wheel>=0.30 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 6)) (0.34.2) Collecting psutil Downloading psutil-5.7.0.tar.gz (449 kB) Building wheels for collected packages: psutil Building wheel for psutil (setup.py): started Building wheel for psutil (setup.py): finished with status 'done' Created wheel for psutil: filename=psutil-5.7.0-cp37-cp37m-linux_x86_64.whl size=276455 sha256=e02a651a4685f6d5f5e03626e630b51c0db6a1700ed88cd472858d04f24bc472 Stored in directory: /tmp/pip-ephem-wheel-cache-781emt4m/wheels/b6/e7/50/aee9cc966163d74430f13f208171dee22f11efa4a4a826661c Successfully built psutil Installing collected packages: cmake, cython, numpy, setuptools-scm, psutil Successfully installed cmake-3.16.3 cython-0.29.16 numpy-1.16.6 psutil-5.7.0 setuptools-scm-3.5.0 [rtd-command-info] start-time: 2020-03-26T11:32:17.144157Z, end-time: 2020-03-26T11:32:18.646932Z, duration: 1, exit-code: 0 git clone --no-single-branch --depth 50 https://github.com/TileDB-Inc/TileDB-Py.git . Cloning into '.'... [rtd-command-info] start-time: 2020-03-26T11:32:19.034124Z, end-time: 2020-03-26T11:32:19.363734Z, duration: 0, exit-code: 0 git checkout --force de2aff00b97498420199a9d16c8375df70e94780 Note: checking out 'de2aff00b97498420199a9d16c8375df70e94780'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at de2aff0 Add error check for libtiledb build validity in setup.py [rtd-command-info] start-time: 2020-03-26T11:32:19.518104Z, end-time: 2020-03-26T11:32:19.842929Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2020-03-26T11:32:21.349909Z, end-time: 2020-03-26T11:32:26.187933Z, duration: 4, exit-code: 0 python3.7 -mvirtualenv Using base prefix '/home/docs/.pyenv/versions/3.7.3' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2020-03-26T11:32:26.351279Z, end-time: 2020-03-26T11:32:27.393342Z, duration: 1, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip Requirement already up-to-date: pip in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (20.0.2) [rtd-command-info] start-time: 2020-03-26T11:32:27.558955Z, end-time: 2020-03-26T11:32:40.178725Z, duration: 12, exit-code: 0 python -m pip install --upgrade --no-cache-dir Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1 Collecting Pygments==2.3.1 Downloading Pygments-2.3.1-py2.py3-none-any.whl (849 kB) Collecting setuptools==41.0.1 Downloading setuptools-41.0.1-py2.py3-none-any.whl (575 kB) Collecting docutils==0.14 Downloading docutils-0.14-py3-none-any.whl (543 kB) Collecting mock==1.0.1 Downloading mock-1.0.1.tar.gz (818 kB) Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.5-py2.py3-none-any.whl (3.1 MB) Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) Collecting readthedocs-sphinx-ext<1.1 Downloading readthedocs_sphinx_ext-1.0.1-py2.py3-none-any.whl (14 kB) Collecting future Downloading future-0.18.2.tar.gz (829 kB) Collecting sphinxcontrib-websupport Downloading sphinxcontrib_websupport-1.2.1-py2.py3-none-any.whl (39 kB) Collecting imagesize Downloading imagesize-1.2.0-py2.py3-none-any.whl (4.8 kB) Collecting babel!=2.0,>=1.3 Downloading Babel-2.8.0-py2.py3-none-any.whl (8.6 MB) Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.0.0-py2.py3-none-any.whl (97 kB) Collecting requests>=2.0.0 Downloading requests-2.23.0-py2.py3-none-any.whl (58 kB) Collecting Jinja2>=2.3 Downloading Jinja2-2.11.1-py2.py3-none-any.whl (126 kB) Collecting packaging Downloading packaging-20.3-py2.py3-none-any.whl (37 kB) Collecting six>=1.5 Downloading six-1.14.0-py2.py3-none-any.whl (10 kB) Collecting pytz>=2015.7 Downloading pytz-2019.3-py2.py3-none-any.whl (509 kB) Collecting idna<3,>=2.5 Downloading idna-2.9-py2.py3-none-any.whl (58 kB) Collecting chardet<4,>=3.0.2 Downloading chardet-3.0.4-py2.py3-none-any.whl (133 kB) Collecting urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 Downloading urllib3-1.25.8-py2.py3-none-any.whl (125 kB) Collecting certifi>=2017.4.17 Downloading certifi-2019.11.28-py2.py3-none-any.whl (156 kB) Collecting MarkupSafe>=0.23 Downloading MarkupSafe-1.1.1-cp37-cp37m-manylinux1_x86_64.whl (27 kB) Collecting pyparsing>=2.0.2 Downloading pyparsing-2.4.6-py2.py3-none-any.whl (67 kB) Building wheels for collected packages: mock, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23754 sha256=1b62a495df5f24241a42a09e249fbdd11edfe61e25a92d20b451f132cba9b4ab Stored in directory: /tmp/pip-ephem-wheel-cache-uq5if81_/wheels/16/03/37/f0a64ab894c9102906f192db1a4071b7592292ad661563c69b Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491058 sha256=b854163ed42c845a39d49fb77932a57621922872e97764c5984c4c8786d1bc47 Stored in directory: /tmp/pip-ephem-wheel-cache-uq5if81_/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0 Successfully built mock future Installing collected packages: Pygments, setuptools, docutils, mock, pillow, alabaster, future, commonmark, sphinxcontrib-websupport, imagesize, pytz, babel, snowballstemmer, idna, chardet, urllib3, certifi, requests, MarkupSafe, Jinja2, six, pyparsing, packaging, sphinx, recommonmark, sphinx-rtd-theme, readthedocs-sphinx-ext Attempting uninstall: setuptools Found existing installation: setuptools 46.1.3 Uninstalling setuptools-46.1.3: Successfully uninstalled setuptools-46.1.3 Successfully installed Jinja2-2.11.1 MarkupSafe-1.1.1 Pygments-2.3.1 alabaster-0.7.12 babel-2.8.0 certifi-2019.11.28 chardet-3.0.4 commonmark-0.8.1 docutils-0.14 future-0.18.2 idna-2.9 imagesize-1.2.0 mock-1.0.1 packaging-20.3 pillow-5.4.1 pyparsing-2.4.6 pytz-2019.3 readthedocs-sphinx-ext-1.0.1 recommonmark-0.5.0 requests-2.23.0 setuptools-41.0.1 six-1.14.0 snowballstemmer-2.0.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-websupport-1.2.1 urllib3-1.25.8 [rtd-command-info] start-time: 2020-03-26T11:32:40.335864Z, end-time: 2020-03-26T11:32:53.574514Z, duration: 13, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r requirements.txt Collecting cmake>=3.11.0 Downloading cmake-3.16.3-py3-none-manylinux2010_x86_64.whl (17.0 MB) Collecting cython>=0.29 Downloading Cython-0.29.16-cp37-cp37m-manylinux1_x86_64.whl (2.1 MB) Collecting numpy==1.16.* Downloading numpy-1.16.6-cp37-cp37m-manylinux1_x86_64.whl (17.3 MB) Requirement already satisfied: setuptools>=18.0.1 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 4)) (41.0.1) Collecting setuptools-scm>=1.5.4 Downloading setuptools_scm-3.5.0-py2.py3-none-any.whl (26 kB) Requirement already satisfied: wheel>=0.30 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 6)) (0.34.2) Collecting psutil Downloading psutil-5.7.0.tar.gz (449 kB) Building wheels for collected packages: psutil Building wheel for psutil (setup.py): started Building wheel for psutil (setup.py): finished with status 'done' Created wheel for psutil: filename=psutil-5.7.0-cp37-cp37m-linux_x86_64.whl size=276466 sha256=14f193339241f99071fafa7065448c2f15daf89715a849101a65a23194f8df64 Stored in directory: /tmp/pip-ephem-wheel-cache-ic10ggnj/wheels/b6/e7/50/aee9cc966163d74430f13f208171dee22f11efa4a4a826661c Successfully built psutil Installing collected packages: cmake, cython, numpy, setuptools-scm, psutil Successfully installed cmake-3.16.3 cython-0.29.16 numpy-1.16.6 psutil-5.7.0 setuptools-scm-3.5.0 [rtd-command-info] start-time: 2020-03-26T11:32:53.739700Z, end-time: 2020-03-26T12:32:22.797272Z, duration: 3569, exit-code: 137 python ./setup.py install --force libtiledb_exists checking 'library_dirs': [] libtiledb_exists found: 'None' running install running bdist_egg GNU Make 4.1 Built for x86_64-pc-linux-gnu Copyright (C) 1988-2014 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. -- The C compiler identification is GNU 7.4.0 -- The CXX compiler identification is GNU 7.4.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Starting TileDB superbuild. -- Found Bzip2: /usr/lib/x86_64-linux-gnu/libbz2.so -- Could NOT find LZ4 (missing: LZ4_LIBRARIES LZ4_INCLUDE_DIR) -- Adding LZ4 as an external project -- Could NOT find Spdlog (missing: SPDLOG_INCLUDE_DIR) -- Adding Spdlog as an external project -- Found Zlib: /usr/lib/x86_64-linux-gnu/libz.so -- Could NOT find Zstd (missing: ZSTD_LIBRARIES ZSTD_INCLUDE_DIR) -- Adding Zstd as an external project -- Found OpenSSL: /usr/lib/x86_64-linux-gnu/libssl.so -- OpenSSL crypto: /usr/lib/x86_64-linux-gnu/libcrypto.so -- root: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/install;/usr/local/opt/openssl -- Could NOT find CURL (missing: CURL_LIBRARY CURL_INCLUDE_DIR) -- Could NOT find Curl (missing: CURL_LIBRARIES CURL_INCLUDE_DIR) -- Adding Curl as an external project CMake Warning at cmake/Modules/FindCurl_EP.cmake:106 (message): TileDB FindOpenSSL_EP did not set TILEDB_OPENSSL_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) CMake Warning at cmake/Modules/FindCurl_EP.cmake:118 (message): TileDB FindZlib_EP did not set TILEDB_ZLIB_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) -- Could NOT find AWSSDK -- Adding AWSSDK as an external project -- Could NOT find TBB (missing: TBB_LIBRARIES TBB_INCLUDE_DIR) -- Adding TBB as an external project -- Not found clang-tidy -- Not found clang-format -- Found Doxygen: /usr/bin/doxygen (found version "1.8.13") found components: doxygen dot -- Install prefix is /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/dist -- Configuring done -- Generating done -- Build files have been written to: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build Scanning dependencies of target ep_spdlog [ 1%] Creating directories for 'ep_spdlog' [ 3%] Performing download step (download, verify and extract) for 'ep_spdlog' -- ep_spdlog download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_spdlog-stamp/ep_spdlog-download-*.log [ 5%] No patch step for 'ep_spdlog' [ 7%] No update step for 'ep_spdlog' [ 8%] No configure step for 'ep_spdlog' [ 10%] No build step for 'ep_spdlog' [ 12%] No install step for 'ep_spdlog' [ 14%] Completed 'ep_spdlog' [ 14%] Built target ep_spdlog Scanning dependencies of target ep_curl [ 16%] Creating directories for 'ep_curl' [ 17%] Performing download step (download, verify and extract) for 'ep_curl' -- ep_curl download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-download-*.log [ 19%] No patch step for 'ep_curl' [ 21%] No update step for 'ep_curl' [ 23%] Performing configure step for 'ep_curl' -- ep_curl configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-configure-*.log [ 25%] Performing build step for 'ep_curl' -- ep_curl build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-build-*.log [ 26%] Performing install step for 'ep_curl' -- ep_curl install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-install-*.log [ 28%] Completed 'ep_curl' [ 28%] Built target ep_curl Scanning dependencies of target ep_lz4 [ 30%] Creating directories for 'ep_lz4' [ 32%] Performing download step (download, verify and extract) for 'ep_lz4' -- ep_lz4 download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_lz4-stamp/ep_lz4-download-*.log [ 33%] No patch step for 'ep_lz4' [ 35%] No update step for 'ep_lz4' [ 37%] Performing configure step for 'ep_lz4' -- ep_lz4 configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_lz4-stamp/ep_lz4-configure-*.log [ 39%] Performing build step for 'ep_lz4' -- ep_lz4 build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_lz4-stamp/ep_lz4-build-*.log [ 41%] Performing install step for 'ep_lz4' -- ep_lz4 install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_lz4-stamp/ep_lz4-install-*.log [ 42%] Completed 'ep_lz4' [ 42%] Built target ep_lz4 Scanning dependencies of target ep_zstd [ 44%] Creating directories for 'ep_zstd' [ 46%] Performing download step (download, verify and extract) for 'ep_zstd' -- ep_zstd download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-download-*.log [ 48%] No patch step for 'ep_zstd' [ 50%] No update step for 'ep_zstd' [ 51%] Performing configure step for 'ep_zstd' -- ep_zstd configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-configure-*.log [ 53%] Performing build step for 'ep_zstd' -- ep_zstd build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-build-*.log [ 55%] Performing install step for 'ep_zstd' -- ep_zstd install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-install-*.log [ 57%] Completed 'ep_zstd' [ 57%] Built target ep_zstd Scanning dependencies of target ep_tbb [ 58%] Creating directories for 'ep_tbb' [ 60%] Performing download step (download, verify and extract) for 'ep_tbb' -- ep_tbb download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_tbb-stamp/ep_tbb-download-*.log [ 62%] No patch step for 'ep_tbb' [ 64%] No update step for 'ep_tbb' [ 66%] No configure step for 'ep_tbb' [ 67%] No build step for 'ep_tbb' [ 69%] No install step for 'ep_tbb' [ 71%] Completed 'ep_tbb' [ 71%] Built target ep_tbb Scanning dependencies of target ep_awssdk [ 73%] Creating directories for 'ep_awssdk' [ 75%] Performing download step (download, verify and extract) for 'ep_awssdk' -- ep_awssdk download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-download-*.log [ 76%] No patch step for 'ep_awssdk' [ 78%] No update step for 'ep_awssdk' [ 80%] Performing configure step for 'ep_awssdk' -- ep_awssdk configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-configure-*.log [ 82%] Performing build step for 'ep_awssdk' Command killed due to excessive memory consumption [rtd-command-info] start-time: 2020-03-26T12:32:17.681583Z, end-time: 2020-03-26T12:32:22.378426Z, duration: 4, exit-code: 0 git clone --no-single-branch --depth 50 https://github.com/TileDB-Inc/TileDB-Py.git . Cloning into '.'... [rtd-command-info] start-time: 2020-03-26T12:32:22.787634Z, end-time: 2020-03-26T12:32:23.117325Z, duration: 0, exit-code: 0 git checkout --force de2aff00b97498420199a9d16c8375df70e94780 Note: checking out 'de2aff00b97498420199a9d16c8375df70e94780'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at de2aff0 Add error check for libtiledb build validity in setup.py [rtd-command-info] start-time: 2020-03-26T12:32:23.274290Z, end-time: 2020-03-26T12:32:23.593408Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2020-03-26T12:32:25.146560Z, end-time: 2020-03-26T12:32:30.298802Z, duration: 5, exit-code: 0 python3.7 -mvirtualenv Using base prefix '/home/docs/.pyenv/versions/3.7.3' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2020-03-26T12:32:30.783151Z, end-time: 2020-03-26T12:32:31.808755Z, duration: 1, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip Requirement already up-to-date: pip in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (20.0.2) [rtd-command-info] start-time: 2020-03-26T12:32:31.964131Z, end-time: 2020-03-26T12:32:44.399954Z, duration: 12, exit-code: 0 python -m pip install --upgrade --no-cache-dir Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1 Collecting Pygments==2.3.1 Downloading Pygments-2.3.1-py2.py3-none-any.whl (849 kB) Collecting setuptools==41.0.1 Downloading setuptools-41.0.1-py2.py3-none-any.whl (575 kB) Collecting docutils==0.14 Downloading docutils-0.14-py3-none-any.whl (543 kB) Collecting mock==1.0.1 Downloading mock-1.0.1.tar.gz (818 kB) Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.5-py2.py3-none-any.whl (3.1 MB) Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) Collecting readthedocs-sphinx-ext<1.1 Downloading readthedocs_sphinx_ext-1.0.1-py2.py3-none-any.whl (14 kB) Collecting future Downloading future-0.18.2.tar.gz (829 kB) Collecting packaging Downloading packaging-20.3-py2.py3-none-any.whl (37 kB) Collecting sphinxcontrib-websupport Downloading sphinxcontrib_websupport-1.2.1-py2.py3-none-any.whl (39 kB) Collecting Jinja2>=2.3 Downloading Jinja2-2.11.1-py2.py3-none-any.whl (126 kB) Collecting babel!=2.0,>=1.3 Downloading Babel-2.8.0-py2.py3-none-any.whl (8.6 MB) Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.0.0-py2.py3-none-any.whl (97 kB) Collecting imagesize Downloading imagesize-1.2.0-py2.py3-none-any.whl (4.8 kB) Collecting six>=1.5 Downloading six-1.14.0-py2.py3-none-any.whl (10 kB) Collecting requests>=2.0.0 Downloading requests-2.23.0-py2.py3-none-any.whl (58 kB) Collecting pyparsing>=2.0.2 Downloading pyparsing-2.4.6-py2.py3-none-any.whl (67 kB) Collecting MarkupSafe>=0.23 Downloading MarkupSafe-1.1.1-cp37-cp37m-manylinux1_x86_64.whl (27 kB) Collecting pytz>=2015.7 Downloading pytz-2019.3-py2.py3-none-any.whl (509 kB) Collecting chardet<4,>=3.0.2 Downloading chardet-3.0.4-py2.py3-none-any.whl (133 kB) Collecting certifi>=2017.4.17 Downloading certifi-2019.11.28-py2.py3-none-any.whl (156 kB) Collecting idna<3,>=2.5 Downloading idna-2.9-py2.py3-none-any.whl (58 kB) Collecting urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 Downloading urllib3-1.25.8-py2.py3-none-any.whl (125 kB) Building wheels for collected packages: mock, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23754 sha256=1b48fd55c32ccc98cd0a35d4654ea510546ba8f9fce254fa3e70288f9fd393ee Stored in directory: /tmp/pip-ephem-wheel-cache-f3pi0yhm/wheels/16/03/37/f0a64ab894c9102906f192db1a4071b7592292ad661563c69b Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491058 sha256=125dd4efd31b4f9c413ef90dc4f9163af39984f0a452faae7eaad55e35083aca Stored in directory: /tmp/pip-ephem-wheel-cache-f3pi0yhm/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0 Successfully built mock future Installing collected packages: Pygments, setuptools, docutils, mock, pillow, alabaster, future, commonmark, six, pyparsing, packaging, sphinxcontrib-websupport, MarkupSafe, Jinja2, pytz, babel, snowballstemmer, imagesize, chardet, certifi, idna, urllib3, requests, sphinx, recommonmark, sphinx-rtd-theme, readthedocs-sphinx-ext Attempting uninstall: setuptools Found existing installation: setuptools 46.1.3 Uninstalling setuptools-46.1.3: Successfully uninstalled setuptools-46.1.3 Successfully installed Jinja2-2.11.1 MarkupSafe-1.1.1 Pygments-2.3.1 alabaster-0.7.12 babel-2.8.0 certifi-2019.11.28 chardet-3.0.4 commonmark-0.8.1 docutils-0.14 future-0.18.2 idna-2.9 imagesize-1.2.0 mock-1.0.1 packaging-20.3 pillow-5.4.1 pyparsing-2.4.6 pytz-2019.3 readthedocs-sphinx-ext-1.0.1 recommonmark-0.5.0 requests-2.23.0 setuptools-41.0.1 six-1.14.0 snowballstemmer-2.0.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-websupport-1.2.1 urllib3-1.25.8 [rtd-command-info] start-time: 2020-03-26T12:32:44.567148Z, end-time: 2020-03-26T12:33:12.464149Z, duration: 27, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r requirements.txt Collecting cmake>=3.11.0 Downloading cmake-3.16.3-py3-none-manylinux2010_x86_64.whl (17.0 MB) Collecting cython>=0.29 Downloading Cython-0.29.16-cp37-cp37m-manylinux1_x86_64.whl (2.1 MB) Collecting numpy==1.16.* Downloading numpy-1.16.6-cp37-cp37m-manylinux1_x86_64.whl (17.3 MB) Requirement already satisfied: setuptools>=18.0.1 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 4)) (41.0.1) Collecting setuptools-scm>=1.5.4 Downloading setuptools_scm-3.5.0-py2.py3-none-any.whl (26 kB) Requirement already satisfied: wheel>=0.30 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 6)) (0.34.2) Collecting psutil Downloading psutil-5.7.0.tar.gz (449 kB) Building wheels for collected packages: psutil Building wheel for psutil (setup.py): started Building wheel for psutil (setup.py): finished with status 'done' Created wheel for psutil: filename=psutil-5.7.0-cp37-cp37m-linux_x86_64.whl size=276465 sha256=ce57fd419e5f60f596d0ec30775fe946e9a6ccf554820358f2e0445f2fe0f768 Stored in directory: /tmp/pip-ephem-wheel-cache-vpx07x6x/wheels/b6/e7/50/aee9cc966163d74430f13f208171dee22f11efa4a4a826661c Successfully built psutil Installing collected packages: cmake, cython, numpy, setuptools-scm, psutil Successfully installed cmake-3.16.3 cython-0.29.16 numpy-1.16.6 psutil-5.7.0 setuptools-scm-3.5.0 [rtd-command-info] start-time: 2020-03-26T12:33:12.625777Z, end-time: 2020-03-26T13:32:27.092064Z, duration: 3554, exit-code: 137 python ./setup.py install --force libtiledb_exists checking 'library_dirs': [] libtiledb_exists found: 'None' running install running bdist_egg GNU Make 4.1 Built for x86_64-pc-linux-gnu Copyright (C) 1988-2014 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. -- The C compiler identification is GNU 7.4.0 -- The CXX compiler identification is GNU 7.4.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Starting TileDB superbuild. -- Found Bzip2: /usr/lib/x86_64-linux-gnu/libbz2.so -- Could NOT find LZ4 (missing: LZ4_LIBRARIES LZ4_INCLUDE_DIR) -- Adding LZ4 as an external project -- Could NOT find Spdlog (missing: SPDLOG_INCLUDE_DIR) -- Adding Spdlog as an external project -- Found Zlib: /usr/lib/x86_64-linux-gnu/libz.so -- Could NOT find Zstd (missing: ZSTD_LIBRARIES ZSTD_INCLUDE_DIR) -- Adding Zstd as an external project -- Found OpenSSL: /usr/lib/x86_64-linux-gnu/libssl.so -- OpenSSL crypto: /usr/lib/x86_64-linux-gnu/libcrypto.so -- root: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/install;/usr/local/opt/openssl -- Could NOT find CURL (missing: CURL_LIBRARY CURL_INCLUDE_DIR) -- Could NOT find Curl (missing: CURL_LIBRARIES CURL_INCLUDE_DIR) -- Adding Curl as an external project CMake Warning at cmake/Modules/FindCurl_EP.cmake:106 (message): TileDB FindOpenSSL_EP did not set TILEDB_OPENSSL_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) CMake Warning at cmake/Modules/FindCurl_EP.cmake:118 (message): TileDB FindZlib_EP did not set TILEDB_ZLIB_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) -- Could NOT find AWSSDK -- Adding AWSSDK as an external project -- Could NOT find TBB (missing: TBB_LIBRARIES TBB_INCLUDE_DIR) -- Adding TBB as an external project -- Not found clang-tidy -- Not found clang-format -- Found Doxygen: /usr/bin/doxygen (found version "1.8.13") found components: doxygen dot -- Install prefix is /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/dist -- Configuring done -- Generating done -- Build files have been written to: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build Scanning dependencies of target ep_spdlog [ 1%] Creating directories for 'ep_spdlog' [ 3%] Performing download step (download, verify and extract) for 'ep_spdlog' -- ep_spdlog download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_spdlog-stamp/ep_spdlog-download-*.log [ 5%] No patch step for 'ep_spdlog' [ 7%] No update step for 'ep_spdlog' [ 8%] No configure step for 'ep_spdlog' [ 10%] No build step for 'ep_spdlog' [ 12%] No install step for 'ep_spdlog' [ 14%] Completed 'ep_spdlog' [ 14%] Built target ep_spdlog Scanning dependencies of target ep_curl [ 16%] Creating directories for 'ep_curl' [ 17%] Performing download step (download, verify and extract) for 'ep_curl' -- ep_curl download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-download-*.log [ 19%] No patch step for 'ep_curl' [ 21%] No update step for 'ep_curl' [ 23%] Performing configure step for 'ep_curl' -- ep_curl configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-configure-*.log [ 25%] Performing build step for 'ep_curl' -- ep_curl build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-build-*.log [ 26%] Performing install step for 'ep_curl' -- ep_curl install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-install-*.log [ 28%] Completed 'ep_curl' [ 28%] Built target ep_curl Scanning dependencies of target ep_lz4 [ 30%] Creating directories for 'ep_lz4' [ 32%] Performing download step (download, verify and extract) for 'ep_lz4' -- ep_lz4 download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_lz4-stamp/ep_lz4-download-*.log [ 33%] No patch step for 'ep_lz4' [ 35%] No update step for 'ep_lz4' [ 37%] Performing configure step for 'ep_lz4' -- ep_lz4 configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_lz4-stamp/ep_lz4-configure-*.log [ 39%] Performing build step for 'ep_lz4' -- ep_lz4 build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_lz4-stamp/ep_lz4-build-*.log [ 41%] Performing install step for 'ep_lz4' -- ep_lz4 install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_lz4-stamp/ep_lz4-install-*.log [ 42%] Completed 'ep_lz4' [ 42%] Built target ep_lz4 Scanning dependencies of target ep_zstd [ 44%] Creating directories for 'ep_zstd' [ 46%] Performing download step (download, verify and extract) for 'ep_zstd' -- ep_zstd download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-download-*.log [ 48%] No patch step for 'ep_zstd' [ 50%] No update step for 'ep_zstd' [ 51%] Performing configure step for 'ep_zstd' -- ep_zstd configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-configure-*.log [ 53%] Performing build step for 'ep_zstd' -- ep_zstd build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-build-*.log [ 55%] Performing install step for 'ep_zstd' -- ep_zstd install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-install-*.log [ 57%] Completed 'ep_zstd' [ 57%] Built target ep_zstd Scanning dependencies of target ep_tbb [ 58%] Creating directories for 'ep_tbb' [ 60%] Performing download step (download, verify and extract) for 'ep_tbb' -- ep_tbb download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_tbb-stamp/ep_tbb-download-*.log [ 62%] No patch step for 'ep_tbb' [ 64%] No update step for 'ep_tbb' [ 66%] No configure step for 'ep_tbb' [ 67%] No build step for 'ep_tbb' [ 69%] No install step for 'ep_tbb' [ 71%] Completed 'ep_tbb' [ 71%] Built target ep_tbb Scanning dependencies of target ep_awssdk [ 73%] Creating directories for 'ep_awssdk' [ 75%] Performing download step (download, verify and extract) for 'ep_awssdk' -- ep_awssdk download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-download-*.log [ 76%] No patch step for 'ep_awssdk' [ 78%] No update step for 'ep_awssdk' [ 80%] Performing configure step for 'ep_awssdk' -- ep_awssdk configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-configure-*.log [ 82%] Performing build step for 'ep_awssdk' Command killed due to excessive memory consumption [rtd-command-info] start-time: 2020-03-26T13:32:17.886262Z, end-time: 2020-03-26T13:32:19.392601Z, duration: 1, exit-code: 0 git clone --no-single-branch --depth 50 https://github.com/TileDB-Inc/TileDB-Py.git . Cloning into '.'... [rtd-command-info] start-time: 2020-03-26T13:32:19.796739Z, end-time: 2020-03-26T13:32:20.110248Z, duration: 0, exit-code: 0 git checkout --force de2aff00b97498420199a9d16c8375df70e94780 Note: checking out 'de2aff00b97498420199a9d16c8375df70e94780'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at de2aff0 Add error check for libtiledb build validity in setup.py [rtd-command-info] start-time: 2020-03-26T13:32:20.271147Z, end-time: 2020-03-26T13:32:20.580977Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2020-03-26T13:32:22.093668Z, end-time: 2020-03-26T13:32:26.638293Z, duration: 4, exit-code: 0 python3.7 -mvirtualenv Using base prefix '/home/docs/.pyenv/versions/3.7.3' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2020-03-26T13:32:26.793304Z, end-time: 2020-03-26T13:32:27.762786Z, duration: 0, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip Requirement already up-to-date: pip in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (20.0.2) [rtd-command-info] start-time: 2020-03-26T13:32:27.917685Z, end-time: 2020-03-26T13:32:39.706212Z, duration: 11, exit-code: 0 python -m pip install --upgrade --no-cache-dir Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1 Collecting Pygments==2.3.1 Downloading Pygments-2.3.1-py2.py3-none-any.whl (849 kB) Collecting setuptools==41.0.1 Downloading setuptools-41.0.1-py2.py3-none-any.whl (575 kB) Collecting docutils==0.14 Downloading docutils-0.14-py3-none-any.whl (543 kB) Collecting mock==1.0.1 Downloading mock-1.0.1.tar.gz (818 kB) Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.5-py2.py3-none-any.whl (3.1 MB) Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) Collecting readthedocs-sphinx-ext<1.1 Downloading readthedocs_sphinx_ext-1.0.1-py2.py3-none-any.whl (14 kB) Collecting future Downloading future-0.18.2.tar.gz (829 kB) Collecting requests>=2.0.0 Downloading requests-2.23.0-py2.py3-none-any.whl (58 kB) Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.0.0-py2.py3-none-any.whl (97 kB) Collecting babel!=2.0,>=1.3 Downloading Babel-2.8.0-py2.py3-none-any.whl (8.6 MB) Collecting packaging Downloading packaging-20.3-py2.py3-none-any.whl (37 kB) Collecting Jinja2>=2.3 Downloading Jinja2-2.11.1-py2.py3-none-any.whl (126 kB) Collecting imagesize Downloading imagesize-1.2.0-py2.py3-none-any.whl (4.8 kB) Collecting six>=1.5 Downloading six-1.14.0-py2.py3-none-any.whl (10 kB) Collecting sphinxcontrib-websupport Downloading sphinxcontrib_websupport-1.2.1-py2.py3-none-any.whl (39 kB) Collecting urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 Downloading urllib3-1.25.8-py2.py3-none-any.whl (125 kB) Collecting certifi>=2017.4.17 Downloading certifi-2019.11.28-py2.py3-none-any.whl (156 kB) Collecting idna<3,>=2.5 Downloading idna-2.9-py2.py3-none-any.whl (58 kB) Collecting chardet<4,>=3.0.2 Downloading chardet-3.0.4-py2.py3-none-any.whl (133 kB) Collecting pytz>=2015.7 Downloading pytz-2019.3-py2.py3-none-any.whl (509 kB) Collecting pyparsing>=2.0.2 Downloading pyparsing-2.4.6-py2.py3-none-any.whl (67 kB) Collecting MarkupSafe>=0.23 Downloading MarkupSafe-1.1.1-cp37-cp37m-manylinux1_x86_64.whl (27 kB) Building wheels for collected packages: mock, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23754 sha256=62cf9aed7ab8c0f34c3f3c3c37664ece313420a4f6b9e5a01fddc748b7d4b2b4 Stored in directory: /tmp/pip-ephem-wheel-cache-hgxfkpxe/wheels/16/03/37/f0a64ab894c9102906f192db1a4071b7592292ad661563c69b Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491058 sha256=ca7a53973e37871648200947ccc987276796a2ab571e05bb57b4a382555b807a Stored in directory: /tmp/pip-ephem-wheel-cache-hgxfkpxe/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0 Successfully built mock future Installing collected packages: Pygments, setuptools, docutils, mock, pillow, alabaster, future, commonmark, urllib3, certifi, idna, chardet, requests, snowballstemmer, pytz, babel, pyparsing, six, packaging, MarkupSafe, Jinja2, imagesize, sphinxcontrib-websupport, sphinx, recommonmark, sphinx-rtd-theme, readthedocs-sphinx-ext Attempting uninstall: setuptools Found existing installation: setuptools 46.1.3 Uninstalling setuptools-46.1.3: Successfully uninstalled setuptools-46.1.3 Successfully installed Jinja2-2.11.1 MarkupSafe-1.1.1 Pygments-2.3.1 alabaster-0.7.12 babel-2.8.0 certifi-2019.11.28 chardet-3.0.4 commonmark-0.8.1 docutils-0.14 future-0.18.2 idna-2.9 imagesize-1.2.0 mock-1.0.1 packaging-20.3 pillow-5.4.1 pyparsing-2.4.6 pytz-2019.3 readthedocs-sphinx-ext-1.0.1 recommonmark-0.5.0 requests-2.23.0 setuptools-41.0.1 six-1.14.0 snowballstemmer-2.0.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-websupport-1.2.1 urllib3-1.25.8 [rtd-command-info] start-time: 2020-03-26T13:32:39.861907Z, end-time: 2020-03-26T13:32:51.524946Z, duration: 11, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r requirements.txt Collecting cmake>=3.11.0 Downloading cmake-3.16.3-py3-none-manylinux2010_x86_64.whl (17.0 MB) Collecting cython>=0.29 Downloading Cython-0.29.16-cp37-cp37m-manylinux1_x86_64.whl (2.1 MB) Collecting numpy==1.16.* Downloading numpy-1.16.6-cp37-cp37m-manylinux1_x86_64.whl (17.3 MB) Requirement already satisfied: setuptools>=18.0.1 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 4)) (41.0.1) Collecting setuptools-scm>=1.5.4 Downloading setuptools_scm-3.5.0-py2.py3-none-any.whl (26 kB) Requirement already satisfied: wheel>=0.30 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 6)) (0.34.2) Collecting psutil Downloading psutil-5.7.0.tar.gz (449 kB) Building wheels for collected packages: psutil Building wheel for psutil (setup.py): started Building wheel for psutil (setup.py): finished with status 'done' Created wheel for psutil: filename=psutil-5.7.0-cp37-cp37m-linux_x86_64.whl size=276462 sha256=7250c984f48c40fe985f9a73d32020753c6f3d5bcdfbe7e9c30702a1471128ad Stored in directory: /tmp/pip-ephem-wheel-cache-ld486ccn/wheels/b6/e7/50/aee9cc966163d74430f13f208171dee22f11efa4a4a826661c Successfully built psutil Installing collected packages: cmake, cython, numpy, setuptools-scm, psutil Successfully installed cmake-3.16.3 cython-0.29.16 numpy-1.16.6 psutil-5.7.0 setuptools-scm-3.5.0 [rtd-command-info] start-time: 2020-03-26T13:32:51.681715Z, end-time: 2020-03-26T14:32:24.390520Z, duration: 3572, exit-code: 137 python ./setup.py install --force libtiledb_exists checking 'library_dirs': [] libtiledb_exists found: 'None' running install running bdist_egg GNU Make 4.1 Built for x86_64-pc-linux-gnu Copyright (C) 1988-2014 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. -- The C compiler identification is GNU 7.4.0 -- The CXX compiler identification is GNU 7.4.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Starting TileDB superbuild. -- Found Bzip2: /usr/lib/x86_64-linux-gnu/libbz2.so -- Could NOT find LZ4 (missing: LZ4_LIBRARIES LZ4_INCLUDE_DIR) -- Adding LZ4 as an external project -- Could NOT find Spdlog (missing: SPDLOG_INCLUDE_DIR) -- Adding Spdlog as an external project -- Found Zlib: /usr/lib/x86_64-linux-gnu/libz.so -- Could NOT find Zstd (missing: ZSTD_LIBRARIES ZSTD_INCLUDE_DIR) -- Adding Zstd as an external project -- Found OpenSSL: /usr/lib/x86_64-linux-gnu/libssl.so -- OpenSSL crypto: /usr/lib/x86_64-linux-gnu/libcrypto.so -- root: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/install;/usr/local/opt/openssl -- Could NOT find CURL (missing: CURL_LIBRARY CURL_INCLUDE_DIR) -- Could NOT find Curl (missing: CURL_LIBRARIES CURL_INCLUDE_DIR) -- Adding Curl as an external project CMake Warning at cmake/Modules/FindCurl_EP.cmake:106 (message): TileDB FindOpenSSL_EP did not set TILEDB_OPENSSL_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) CMake Warning at cmake/Modules/FindCurl_EP.cmake:118 (message): TileDB FindZlib_EP did not set TILEDB_ZLIB_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) -- Could NOT find AWSSDK -- Adding AWSSDK as an external project -- Could NOT find TBB (missing: TBB_LIBRARIES TBB_INCLUDE_DIR) -- Adding TBB as an external project -- Not found clang-tidy -- Not found clang-format -- Found Doxygen: /usr/bin/doxygen (found version "1.8.13") found components: doxygen dot -- Install prefix is /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/dist -- Configuring done -- Generating done -- Build files have been written to: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build Scanning dependencies of target ep_spdlog [ 1%] Creating directories for 'ep_spdlog' [ 3%] Performing download step (download, verify and extract) for 'ep_spdlog' -- ep_spdlog download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_spdlog-stamp/ep_spdlog-download-*.log [ 5%] No patch step for 'ep_spdlog' [ 7%] No update step for 'ep_spdlog' [ 8%] No configure step for 'ep_spdlog' [ 10%] No build step for 'ep_spdlog' [ 12%] No install step for 'ep_spdlog' [ 14%] Completed 'ep_spdlog' [ 14%] Built target ep_spdlog Scanning dependencies of target ep_curl [ 16%] Creating directories for 'ep_curl' [ 17%] Performing download step (download, verify and extract) for 'ep_curl' -- ep_curl download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-download-*.log [ 19%] No patch step for 'ep_curl' [ 21%] No update step for 'ep_curl' [ 23%] Performing configure step for 'ep_curl' -- ep_curl configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-configure-*.log [ 25%] Performing build step for 'ep_curl' -- ep_curl build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-build-*.log [ 26%] Performing install step for 'ep_curl' -- ep_curl install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-install-*.log [ 28%] Completed 'ep_curl' [ 28%] Built target ep_curl Scanning dependencies of target ep_lz4 [ 30%] Creating directories for 'ep_lz4' [ 32%] Performing download step (download, verify and extract) for 'ep_lz4' -- ep_lz4 download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_lz4-stamp/ep_lz4-download-*.log [ 33%] No patch step for 'ep_lz4' [ 35%] No update step for 'ep_lz4' [ 37%] Performing configure step for 'ep_lz4' -- ep_lz4 configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_lz4-stamp/ep_lz4-configure-*.log [ 39%] Performing build step for 'ep_lz4' -- ep_lz4 build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_lz4-stamp/ep_lz4-build-*.log [ 41%] Performing install step for 'ep_lz4' -- ep_lz4 install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_lz4-stamp/ep_lz4-install-*.log [ 42%] Completed 'ep_lz4' [ 42%] Built target ep_lz4 Scanning dependencies of target ep_zstd [ 44%] Creating directories for 'ep_zstd' [ 46%] Performing download step (download, verify and extract) for 'ep_zstd' -- ep_zstd download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-download-*.log [ 48%] No patch step for 'ep_zstd' [ 50%] No update step for 'ep_zstd' [ 51%] Performing configure step for 'ep_zstd' -- ep_zstd configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-configure-*.log [ 53%] Performing build step for 'ep_zstd' -- ep_zstd build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-build-*.log [ 55%] Performing install step for 'ep_zstd' -- ep_zstd install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-install-*.log [ 57%] Completed 'ep_zstd' [ 57%] Built target ep_zstd Scanning dependencies of target ep_tbb [ 58%] Creating directories for 'ep_tbb' [ 60%] Performing download step (download, verify and extract) for 'ep_tbb' -- ep_tbb download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_tbb-stamp/ep_tbb-download-*.log [ 62%] No patch step for 'ep_tbb' [ 64%] No update step for 'ep_tbb' [ 66%] No configure step for 'ep_tbb' [ 67%] No build step for 'ep_tbb' [ 69%] No install step for 'ep_tbb' [ 71%] Completed 'ep_tbb' [ 71%] Built target ep_tbb Scanning dependencies of target ep_awssdk [ 73%] Creating directories for 'ep_awssdk' [ 75%] Performing download step (download, verify and extract) for 'ep_awssdk' -- ep_awssdk download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-download-*.log [ 76%] No patch step for 'ep_awssdk' [ 78%] No update step for 'ep_awssdk' [ 80%] Performing configure step for 'ep_awssdk' -- ep_awssdk configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-configure-*.log [ 82%] Performing build step for 'ep_awssdk' Command killed due to excessive memory consumption [rtd-command-info] start-time: 2020-03-26T14:32:18.415093Z, end-time: 2020-03-26T14:32:22.890522Z, duration: 4, exit-code: 0 git clone --no-single-branch --depth 50 https://github.com/TileDB-Inc/TileDB-Py.git . Cloning into '.'... [rtd-command-info] start-time: 2020-03-26T14:32:23.292692Z, end-time: 2020-03-26T14:32:23.595564Z, duration: 0, exit-code: 0 git checkout --force de2aff00b97498420199a9d16c8375df70e94780 Note: checking out 'de2aff00b97498420199a9d16c8375df70e94780'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at de2aff0 Add error check for libtiledb build validity in setup.py [rtd-command-info] start-time: 2020-03-26T14:32:23.754469Z, end-time: 2020-03-26T14:32:24.054415Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2020-03-26T14:32:25.493947Z, end-time: 2020-03-26T14:32:42.154237Z, duration: 16, exit-code: 0 python3.7 -mvirtualenv Using base prefix '/home/docs/.pyenv/versions/3.7.3' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2020-03-26T14:32:42.328034Z, end-time: 2020-03-26T14:32:43.311036Z, duration: 0, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip Requirement already up-to-date: pip in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (20.0.2) [rtd-command-info] start-time: 2020-03-26T14:32:43.472655Z, end-time: 2020-03-26T14:32:55.752094Z, duration: 12, exit-code: 0 python -m pip install --upgrade --no-cache-dir Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1 Collecting Pygments==2.3.1 Downloading Pygments-2.3.1-py2.py3-none-any.whl (849 kB) Collecting setuptools==41.0.1 Downloading setuptools-41.0.1-py2.py3-none-any.whl (575 kB) Collecting docutils==0.14 Downloading docutils-0.14-py3-none-any.whl (543 kB) Collecting mock==1.0.1 Downloading mock-1.0.1.tar.gz (818 kB) Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.5-py2.py3-none-any.whl (3.1 MB) Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) Collecting readthedocs-sphinx-ext<1.1 Downloading readthedocs_sphinx_ext-1.0.1-py2.py3-none-any.whl (14 kB) Collecting future Downloading future-0.18.2.tar.gz (829 kB) Collecting Jinja2>=2.3 Downloading Jinja2-2.11.1-py2.py3-none-any.whl (126 kB) Collecting sphinxcontrib-websupport Downloading sphinxcontrib_websupport-1.2.1-py2.py3-none-any.whl (39 kB) Collecting babel!=2.0,>=1.3 Downloading Babel-2.8.0-py2.py3-none-any.whl (8.6 MB) Collecting requests>=2.0.0 Downloading requests-2.23.0-py2.py3-none-any.whl (58 kB) Collecting packaging Downloading packaging-20.3-py2.py3-none-any.whl (37 kB) Collecting six>=1.5 Downloading six-1.14.0-py2.py3-none-any.whl (10 kB) Collecting imagesize Downloading imagesize-1.2.0-py2.py3-none-any.whl (4.8 kB) Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.0.0-py2.py3-none-any.whl (97 kB) Collecting MarkupSafe>=0.23 Downloading MarkupSafe-1.1.1-cp37-cp37m-manylinux1_x86_64.whl (27 kB) Collecting pytz>=2015.7 Downloading pytz-2019.3-py2.py3-none-any.whl (509 kB) Collecting chardet<4,>=3.0.2 Downloading chardet-3.0.4-py2.py3-none-any.whl (133 kB) Collecting idna<3,>=2.5 Downloading idna-2.9-py2.py3-none-any.whl (58 kB) Collecting certifi>=2017.4.17 Downloading certifi-2019.11.28-py2.py3-none-any.whl (156 kB) Collecting urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 Downloading urllib3-1.25.8-py2.py3-none-any.whl (125 kB) Collecting pyparsing>=2.0.2 Downloading pyparsing-2.4.6-py2.py3-none-any.whl (67 kB) Building wheels for collected packages: mock, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23754 sha256=5c35f768af577eb54655d964d26ffe925659b6d428627cd72ac7f71067d66017 Stored in directory: /tmp/pip-ephem-wheel-cache-r3hcf2x0/wheels/16/03/37/f0a64ab894c9102906f192db1a4071b7592292ad661563c69b Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491058 sha256=93be95c6a026095f05af8d7e7fc3b590b990492459b39b30121657ef61c5558d Stored in directory: /tmp/pip-ephem-wheel-cache-r3hcf2x0/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0 Successfully built mock future Installing collected packages: Pygments, setuptools, docutils, mock, pillow, alabaster, future, commonmark, MarkupSafe, Jinja2, sphinxcontrib-websupport, pytz, babel, chardet, idna, certifi, urllib3, requests, pyparsing, six, packaging, imagesize, snowballstemmer, sphinx, recommonmark, sphinx-rtd-theme, readthedocs-sphinx-ext Attempting uninstall: setuptools Found existing installation: setuptools 46.1.3 Uninstalling setuptools-46.1.3: Successfully uninstalled setuptools-46.1.3 Successfully installed Jinja2-2.11.1 MarkupSafe-1.1.1 Pygments-2.3.1 alabaster-0.7.12 babel-2.8.0 certifi-2019.11.28 chardet-3.0.4 commonmark-0.8.1 docutils-0.14 future-0.18.2 idna-2.9 imagesize-1.2.0 mock-1.0.1 packaging-20.3 pillow-5.4.1 pyparsing-2.4.6 pytz-2019.3 readthedocs-sphinx-ext-1.0.1 recommonmark-0.5.0 requests-2.23.0 setuptools-41.0.1 six-1.14.0 snowballstemmer-2.0.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-websupport-1.2.1 urllib3-1.25.8 [rtd-command-info] start-time: 2020-03-26T14:32:55.921648Z, end-time: 2020-03-26T14:33:18.933032Z, duration: 23, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r requirements.txt Collecting cmake>=3.11.0 Downloading cmake-3.16.3-py3-none-manylinux2010_x86_64.whl (17.0 MB) Collecting cython>=0.29 Downloading Cython-0.29.16-cp37-cp37m-manylinux1_x86_64.whl (2.1 MB) Collecting numpy==1.16.* Downloading numpy-1.16.6-cp37-cp37m-manylinux1_x86_64.whl (17.3 MB) Requirement already satisfied: setuptools>=18.0.1 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 4)) (41.0.1) Collecting setuptools-scm>=1.5.4 Downloading setuptools_scm-3.5.0-py2.py3-none-any.whl (26 kB) Requirement already satisfied: wheel>=0.30 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 6)) (0.34.2) Collecting psutil Downloading psutil-5.7.0.tar.gz (449 kB) Building wheels for collected packages: psutil Building wheel for psutil (setup.py): started Building wheel for psutil (setup.py): finished with status 'done' Created wheel for psutil: filename=psutil-5.7.0-cp37-cp37m-linux_x86_64.whl size=276455 sha256=20234c639d3f0999cae4db61f12496b395434d84bfca08cdf9ed97798e9fe588 Stored in directory: /tmp/pip-ephem-wheel-cache-hotyuanq/wheels/b6/e7/50/aee9cc966163d74430f13f208171dee22f11efa4a4a826661c Successfully built psutil Installing collected packages: cmake, cython, numpy, setuptools-scm, psutil Successfully installed cmake-3.16.3 cython-0.29.16 numpy-1.16.6 psutil-5.7.0 setuptools-scm-3.5.0 [rtd-command-info] start-time: 2020-03-26T14:33:19.161795Z, end-time: 2020-03-26T15:32:30.771976Z, duration: 3551, exit-code: 137 python ./setup.py install --force libtiledb_exists checking 'library_dirs': [] libtiledb_exists found: 'None' running install running bdist_egg GNU Make 4.1 Built for x86_64-pc-linux-gnu Copyright (C) 1988-2014 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. -- The C compiler identification is GNU 7.4.0 -- The CXX compiler identification is GNU 7.4.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Starting TileDB superbuild. -- Found Bzip2: /usr/lib/x86_64-linux-gnu/libbz2.so -- Could NOT find LZ4 (missing: LZ4_LIBRARIES LZ4_INCLUDE_DIR) -- Adding LZ4 as an external project -- Could NOT find Spdlog (missing: SPDLOG_INCLUDE_DIR) -- Adding Spdlog as an external project -- Found Zlib: /usr/lib/x86_64-linux-gnu/libz.so -- Could NOT find Zstd (missing: ZSTD_LIBRARIES ZSTD_INCLUDE_DIR) -- Adding Zstd as an external project -- Found OpenSSL: /usr/lib/x86_64-linux-gnu/libssl.so -- OpenSSL crypto: /usr/lib/x86_64-linux-gnu/libcrypto.so -- root: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/install;/usr/local/opt/openssl -- Could NOT find CURL (missing: CURL_LIBRARY CURL_INCLUDE_DIR) -- Could NOT find Curl (missing: CURL_LIBRARIES CURL_INCLUDE_DIR) -- Adding Curl as an external project CMake Warning at cmake/Modules/FindCurl_EP.cmake:106 (message): TileDB FindOpenSSL_EP did not set TILEDB_OPENSSL_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) CMake Warning at cmake/Modules/FindCurl_EP.cmake:118 (message): TileDB FindZlib_EP did not set TILEDB_ZLIB_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) -- Could NOT find AWSSDK -- Adding AWSSDK as an external project -- Could NOT find TBB (missing: TBB_LIBRARIES TBB_INCLUDE_DIR) -- Adding TBB as an external project -- Not found clang-tidy -- Not found clang-format -- Found Doxygen: /usr/bin/doxygen (found version "1.8.13") found components: doxygen dot -- Install prefix is /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/dist -- Configuring done -- Generating done -- Build files have been written to: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build Scanning dependencies of target ep_curl [ 1%] Creating directories for 'ep_curl' [ 3%] Performing download step (download, verify and extract) for 'ep_curl' -- ep_curl download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-download-*.log [ 5%] No patch step for 'ep_curl' [ 7%] No update step for 'ep_curl' [ 8%] Performing configure step for 'ep_curl' -- ep_curl configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-configure-*.log [ 10%] Performing build step for 'ep_curl' -- ep_curl build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-build-*.log [ 12%] Performing install step for 'ep_curl' -- ep_curl install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-install-*.log [ 14%] Completed 'ep_curl' [ 14%] Built target ep_curl Scanning dependencies of target ep_awssdk [ 16%] Creating directories for 'ep_awssdk' [ 17%] Performing download step (download, verify and extract) for 'ep_awssdk' -- ep_awssdk download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-download-*.log [ 19%] No patch step for 'ep_awssdk' [ 21%] No update step for 'ep_awssdk' [ 23%] Performing configure step for 'ep_awssdk' -- ep_awssdk configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-configure-*.log [ 25%] Performing build step for 'ep_awssdk' Command killed due to excessive memory consumption [rtd-command-info] start-time: 2020-03-26T15:32:18.781041Z, end-time: 2020-03-26T15:32:20.038788Z, duration: 1, exit-code: 0 git clone --no-single-branch --depth 50 https://github.com/TileDB-Inc/TileDB-Py.git . Cloning into '.'... [rtd-command-info] start-time: 2020-03-26T15:32:20.468518Z, end-time: 2020-03-26T15:32:20.804416Z, duration: 0, exit-code: 0 git checkout --force de2aff00b97498420199a9d16c8375df70e94780 Note: checking out 'de2aff00b97498420199a9d16c8375df70e94780'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at de2aff0 Add error check for libtiledb build validity in setup.py [rtd-command-info] start-time: 2020-03-26T15:32:20.979143Z, end-time: 2020-03-26T15:32:21.298963Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2020-03-26T15:32:22.883617Z, end-time: 2020-03-26T15:32:27.562527Z, duration: 4, exit-code: 0 python3.7 -mvirtualenv Using base prefix '/home/docs/.pyenv/versions/3.7.3' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2020-03-26T15:32:27.723641Z, end-time: 2020-03-26T15:32:28.718995Z, duration: 0, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip Requirement already up-to-date: pip in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (20.0.2) [rtd-command-info] start-time: 2020-03-26T15:32:28.876482Z, end-time: 2020-03-26T15:32:40.500769Z, duration: 11, exit-code: 0 python -m pip install --upgrade --no-cache-dir Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1 Collecting Pygments==2.3.1 Downloading Pygments-2.3.1-py2.py3-none-any.whl (849 kB) Collecting setuptools==41.0.1 Downloading setuptools-41.0.1-py2.py3-none-any.whl (575 kB) Collecting docutils==0.14 Downloading docutils-0.14-py3-none-any.whl (543 kB) Collecting mock==1.0.1 Downloading mock-1.0.1.tar.gz (818 kB) Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.5-py2.py3-none-any.whl (3.1 MB) Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) Collecting readthedocs-sphinx-ext<1.1 Downloading readthedocs_sphinx_ext-1.0.1-py2.py3-none-any.whl (14 kB) Collecting future Downloading future-0.18.2.tar.gz (829 kB) Collecting Jinja2>=2.3 Downloading Jinja2-2.11.1-py2.py3-none-any.whl (126 kB) Collecting sphinxcontrib-websupport Downloading sphinxcontrib_websupport-1.2.1-py2.py3-none-any.whl (39 kB) Collecting imagesize Downloading imagesize-1.2.0-py2.py3-none-any.whl (4.8 kB) Collecting six>=1.5 Downloading six-1.14.0-py2.py3-none-any.whl (10 kB) Collecting requests>=2.0.0 Downloading requests-2.23.0-py2.py3-none-any.whl (58 kB) Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.0.0-py2.py3-none-any.whl (97 kB) Collecting babel!=2.0,>=1.3 Downloading Babel-2.8.0-py2.py3-none-any.whl (8.6 MB) Collecting packaging Downloading packaging-20.3-py2.py3-none-any.whl (37 kB) Collecting MarkupSafe>=0.23 Downloading MarkupSafe-1.1.1-cp37-cp37m-manylinux1_x86_64.whl (27 kB) Collecting urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 Downloading urllib3-1.25.8-py2.py3-none-any.whl (125 kB) Collecting chardet<4,>=3.0.2 Downloading chardet-3.0.4-py2.py3-none-any.whl (133 kB) Collecting certifi>=2017.4.17 Downloading certifi-2019.11.28-py2.py3-none-any.whl (156 kB) Collecting idna<3,>=2.5 Downloading idna-2.9-py2.py3-none-any.whl (58 kB) Collecting pytz>=2015.7 Downloading pytz-2019.3-py2.py3-none-any.whl (509 kB) Collecting pyparsing>=2.0.2 Downloading pyparsing-2.4.6-py2.py3-none-any.whl (67 kB) Building wheels for collected packages: mock, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23754 sha256=efbae8389cc3e9f713c7dd6fb1be8d9639d8046c1fe182c7ddbc17d97cd2ddff Stored in directory: /tmp/pip-ephem-wheel-cache-72trvwoh/wheels/16/03/37/f0a64ab894c9102906f192db1a4071b7592292ad661563c69b Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491058 sha256=415e820c96d4e0737615cd5739eed52d42ebcbd48a5fd300a88a1d024fe69702 Stored in directory: /tmp/pip-ephem-wheel-cache-72trvwoh/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0 Successfully built mock future Installing collected packages: Pygments, setuptools, docutils, mock, pillow, alabaster, future, commonmark, MarkupSafe, Jinja2, sphinxcontrib-websupport, imagesize, six, urllib3, chardet, certifi, idna, requests, snowballstemmer, pytz, babel, pyparsing, packaging, sphinx, recommonmark, sphinx-rtd-theme, readthedocs-sphinx-ext Attempting uninstall: setuptools Found existing installation: setuptools 46.1.3 Uninstalling setuptools-46.1.3: Successfully uninstalled setuptools-46.1.3 Successfully installed Jinja2-2.11.1 MarkupSafe-1.1.1 Pygments-2.3.1 alabaster-0.7.12 babel-2.8.0 certifi-2019.11.28 chardet-3.0.4 commonmark-0.8.1 docutils-0.14 future-0.18.2 idna-2.9 imagesize-1.2.0 mock-1.0.1 packaging-20.3 pillow-5.4.1 pyparsing-2.4.6 pytz-2019.3 readthedocs-sphinx-ext-1.0.1 recommonmark-0.5.0 requests-2.23.0 setuptools-41.0.1 six-1.14.0 snowballstemmer-2.0.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-websupport-1.2.1 urllib3-1.25.8 [rtd-command-info] start-time: 2020-03-26T15:32:40.656827Z, end-time: 2020-03-26T15:32:52.981580Z, duration: 12, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r requirements.txt Collecting cmake>=3.11.0 Downloading cmake-3.16.3-py3-none-manylinux2010_x86_64.whl (17.0 MB) Collecting cython>=0.29 Downloading Cython-0.29.16-cp37-cp37m-manylinux1_x86_64.whl (2.1 MB) Collecting numpy==1.16.* Downloading numpy-1.16.6-cp37-cp37m-manylinux1_x86_64.whl (17.3 MB) Requirement already satisfied: setuptools>=18.0.1 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 4)) (41.0.1) Collecting setuptools-scm>=1.5.4 Downloading setuptools_scm-3.5.0-py2.py3-none-any.whl (26 kB) Requirement already satisfied: wheel>=0.30 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 6)) (0.34.2) Collecting psutil Downloading psutil-5.7.0.tar.gz (449 kB) Building wheels for collected packages: psutil Building wheel for psutil (setup.py): started Building wheel for psutil (setup.py): finished with status 'done' Created wheel for psutil: filename=psutil-5.7.0-cp37-cp37m-linux_x86_64.whl size=276451 sha256=5f230c9e842b7160a65f5ad8a7c82beaae9647388040e7404040c7edc949cc56 Stored in directory: /tmp/pip-ephem-wheel-cache-i12vdlj7/wheels/b6/e7/50/aee9cc966163d74430f13f208171dee22f11efa4a4a826661c Successfully built psutil Installing collected packages: cmake, cython, numpy, setuptools-scm, psutil Successfully installed cmake-3.16.3 cython-0.29.16 numpy-1.16.6 psutil-5.7.0 setuptools-scm-3.5.0 [rtd-command-info] start-time: 2020-03-26T15:32:53.180865Z, end-time: 2020-03-26T16:32:25.274482Z, duration: 3572, exit-code: 137 python ./setup.py install --force libtiledb_exists checking 'library_dirs': [] libtiledb_exists found: 'None' running install running bdist_egg GNU Make 4.1 Built for x86_64-pc-linux-gnu Copyright (C) 1988-2014 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. -- The C compiler identification is GNU 7.4.0 -- The CXX compiler identification is GNU 7.4.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Starting TileDB superbuild. -- Found Bzip2: /usr/lib/x86_64-linux-gnu/libbz2.so -- Could NOT find LZ4 (missing: LZ4_LIBRARIES LZ4_INCLUDE_DIR) -- Adding LZ4 as an external project -- Could NOT find Spdlog (missing: SPDLOG_INCLUDE_DIR) -- Adding Spdlog as an external project -- Found Zlib: /usr/lib/x86_64-linux-gnu/libz.so -- Could NOT find Zstd (missing: ZSTD_LIBRARIES ZSTD_INCLUDE_DIR) -- Adding Zstd as an external project -- Found OpenSSL: /usr/lib/x86_64-linux-gnu/libssl.so -- OpenSSL crypto: /usr/lib/x86_64-linux-gnu/libcrypto.so -- root: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/install;/usr/local/opt/openssl -- Could NOT find CURL (missing: CURL_LIBRARY CURL_INCLUDE_DIR) -- Could NOT find Curl (missing: CURL_LIBRARIES CURL_INCLUDE_DIR) -- Adding Curl as an external project CMake Warning at cmake/Modules/FindCurl_EP.cmake:106 (message): TileDB FindOpenSSL_EP did not set TILEDB_OPENSSL_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) CMake Warning at cmake/Modules/FindCurl_EP.cmake:118 (message): TileDB FindZlib_EP did not set TILEDB_ZLIB_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) -- Could NOT find AWSSDK -- Adding AWSSDK as an external project -- Could NOT find TBB (missing: TBB_LIBRARIES TBB_INCLUDE_DIR) -- Adding TBB as an external project -- Not found clang-tidy -- Not found clang-format -- Found Doxygen: /usr/bin/doxygen (found version "1.8.13") found components: doxygen dot -- Install prefix is /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/dist -- Configuring done -- Generating done -- Build files have been written to: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build Scanning dependencies of target ep_curl [ 1%] Creating directories for 'ep_curl' [ 3%] Performing download step (download, verify and extract) for 'ep_curl' -- ep_curl download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-download-*.log [ 5%] No patch step for 'ep_curl' [ 7%] No update step for 'ep_curl' [ 8%] Performing configure step for 'ep_curl' -- ep_curl configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-configure-*.log [ 10%] Performing build step for 'ep_curl' -- ep_curl build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-build-*.log [ 12%] Performing install step for 'ep_curl' -- ep_curl install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-install-*.log [ 14%] Completed 'ep_curl' [ 14%] Built target ep_curl Scanning dependencies of target ep_awssdk [ 16%] Creating directories for 'ep_awssdk' [ 17%] Performing download step (download, verify and extract) for 'ep_awssdk' -- ep_awssdk download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-download-*.log [ 19%] No patch step for 'ep_awssdk' [ 21%] No update step for 'ep_awssdk' [ 23%] Performing configure step for 'ep_awssdk' -- ep_awssdk configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-configure-*.log [ 25%] Performing build step for 'ep_awssdk' Command killed due to excessive memory consumption [rtd-command-info] start-time: 2020-03-26T16:32:19.064848Z, end-time: 2020-03-26T16:32:20.313631Z, duration: 1, exit-code: 0 git clone --no-single-branch --depth 50 https://github.com/TileDB-Inc/TileDB-Py.git . Cloning into '.'... [rtd-command-info] start-time: 2020-03-26T16:32:20.722681Z, end-time: 2020-03-26T16:32:21.030300Z, duration: 0, exit-code: 0 git checkout --force de2aff00b97498420199a9d16c8375df70e94780 Note: checking out 'de2aff00b97498420199a9d16c8375df70e94780'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at de2aff0 Add error check for libtiledb build validity in setup.py [rtd-command-info] start-time: 2020-03-26T16:32:21.191126Z, end-time: 2020-03-26T16:32:21.494544Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2020-03-26T16:32:22.962079Z, end-time: 2020-03-26T16:32:27.888758Z, duration: 4, exit-code: 0 python3.7 -mvirtualenv Using base prefix '/home/docs/.pyenv/versions/3.7.3' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2020-03-26T16:32:28.051580Z, end-time: 2020-03-26T16:32:29.000277Z, duration: 0, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip Requirement already up-to-date: pip in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (20.0.2) [rtd-command-info] start-time: 2020-03-26T16:32:29.158418Z, end-time: 2020-03-26T16:32:40.323789Z, duration: 11, exit-code: 0 python -m pip install --upgrade --no-cache-dir Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1 Collecting Pygments==2.3.1 Downloading Pygments-2.3.1-py2.py3-none-any.whl (849 kB) Collecting setuptools==41.0.1 Downloading setuptools-41.0.1-py2.py3-none-any.whl (575 kB) Collecting docutils==0.14 Downloading docutils-0.14-py3-none-any.whl (543 kB) Collecting mock==1.0.1 Downloading mock-1.0.1.tar.gz (818 kB) Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.5-py2.py3-none-any.whl (3.1 MB) Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) Collecting readthedocs-sphinx-ext<1.1 Downloading readthedocs_sphinx_ext-1.0.1-py2.py3-none-any.whl (14 kB) Collecting future Downloading future-0.18.2.tar.gz (829 kB) Collecting requests>=2.0.0 Downloading requests-2.23.0-py2.py3-none-any.whl (58 kB) Collecting sphinxcontrib-websupport Downloading sphinxcontrib_websupport-1.2.1-py2.py3-none-any.whl (39 kB) Collecting six>=1.5 Downloading six-1.14.0-py2.py3-none-any.whl (10 kB) Collecting Jinja2>=2.3 Downloading Jinja2-2.11.1-py2.py3-none-any.whl (126 kB) Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.0.0-py2.py3-none-any.whl (97 kB) Collecting imagesize Downloading imagesize-1.2.0-py2.py3-none-any.whl (4.8 kB) Collecting babel!=2.0,>=1.3 Downloading Babel-2.8.0-py2.py3-none-any.whl (8.6 MB) Collecting packaging Downloading packaging-20.3-py2.py3-none-any.whl (37 kB) Collecting idna<3,>=2.5 Downloading idna-2.9-py2.py3-none-any.whl (58 kB) Collecting chardet<4,>=3.0.2 Downloading chardet-3.0.4-py2.py3-none-any.whl (133 kB) Collecting certifi>=2017.4.17 Downloading certifi-2019.11.28-py2.py3-none-any.whl (156 kB) Collecting urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 Downloading urllib3-1.25.8-py2.py3-none-any.whl (125 kB) Collecting MarkupSafe>=0.23 Downloading MarkupSafe-1.1.1-cp37-cp37m-manylinux1_x86_64.whl (27 kB) Collecting pytz>=2015.7 Downloading pytz-2019.3-py2.py3-none-any.whl (509 kB) Collecting pyparsing>=2.0.2 Downloading pyparsing-2.4.6-py2.py3-none-any.whl (67 kB) Building wheels for collected packages: mock, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23754 sha256=8963b37615b96e11bab76954c2fc574b5c068b683592186f808e1b5071e55064 Stored in directory: /tmp/pip-ephem-wheel-cache-y8t5mait/wheels/16/03/37/f0a64ab894c9102906f192db1a4071b7592292ad661563c69b Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491058 sha256=aa69790717208809c92dd563cf410e15b75b2e07e6ca58532a57b4f2c57b33bb Stored in directory: /tmp/pip-ephem-wheel-cache-y8t5mait/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0 Successfully built mock future Installing collected packages: Pygments, setuptools, docutils, mock, pillow, alabaster, future, commonmark, idna, chardet, certifi, urllib3, requests, sphinxcontrib-websupport, six, MarkupSafe, Jinja2, snowballstemmer, imagesize, pytz, babel, pyparsing, packaging, sphinx, recommonmark, sphinx-rtd-theme, readthedocs-sphinx-ext Attempting uninstall: setuptools Found existing installation: setuptools 46.1.3 Uninstalling setuptools-46.1.3: Successfully uninstalled setuptools-46.1.3 Successfully installed Jinja2-2.11.1 MarkupSafe-1.1.1 Pygments-2.3.1 alabaster-0.7.12 babel-2.8.0 certifi-2019.11.28 chardet-3.0.4 commonmark-0.8.1 docutils-0.14 future-0.18.2 idna-2.9 imagesize-1.2.0 mock-1.0.1 packaging-20.3 pillow-5.4.1 pyparsing-2.4.6 pytz-2019.3 readthedocs-sphinx-ext-1.0.1 recommonmark-0.5.0 requests-2.23.0 setuptools-41.0.1 six-1.14.0 snowballstemmer-2.0.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-websupport-1.2.1 urllib3-1.25.8 [rtd-command-info] start-time: 2020-03-26T16:32:40.480208Z, end-time: 2020-03-26T16:32:51.987154Z, duration: 11, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r requirements.txt Collecting cmake>=3.11.0 Downloading cmake-3.16.3-py3-none-manylinux2010_x86_64.whl (17.0 MB) Collecting cython>=0.29 Downloading Cython-0.29.16-cp37-cp37m-manylinux1_x86_64.whl (2.1 MB) Collecting numpy==1.16.* Downloading numpy-1.16.6-cp37-cp37m-manylinux1_x86_64.whl (17.3 MB) Requirement already satisfied: setuptools>=18.0.1 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 4)) (41.0.1) Collecting setuptools-scm>=1.5.4 Downloading setuptools_scm-3.5.0-py2.py3-none-any.whl (26 kB) Requirement already satisfied: wheel>=0.30 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 6)) (0.34.2) Collecting psutil Downloading psutil-5.7.0.tar.gz (449 kB) Building wheels for collected packages: psutil Building wheel for psutil (setup.py): started Building wheel for psutil (setup.py): finished with status 'done' Created wheel for psutil: filename=psutil-5.7.0-cp37-cp37m-linux_x86_64.whl size=276464 sha256=4cd9acbfd3f95777b7ceed4587e78b6e4c37a20cc5e35720c5cf5ab771d84c45 Stored in directory: /tmp/pip-ephem-wheel-cache-3ebjxr4f/wheels/b6/e7/50/aee9cc966163d74430f13f208171dee22f11efa4a4a826661c Successfully built psutil Installing collected packages: cmake, cython, numpy, setuptools-scm, psutil Successfully installed cmake-3.16.3 cython-0.29.16 numpy-1.16.6 psutil-5.7.0 setuptools-scm-3.5.0 [rtd-command-info] start-time: 2020-03-26T17:12:58.267638Z, end-time: 2020-03-26T17:13:06.152749Z, duration: 7, exit-code: 0 git clone --no-single-branch --depth 50 https://github.com/TileDB-Inc/TileDB-Py.git . Cloning into '.'... [rtd-command-info] start-time: 2020-03-26T17:13:06.728259Z, end-time: 2020-03-26T17:13:06.958546Z, duration: 0, exit-code: 0 git checkout --force de2aff00b97498420199a9d16c8375df70e94780 Note: checking out 'de2aff00b97498420199a9d16c8375df70e94780'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at de2aff0 Add error check for libtiledb build validity in setup.py [rtd-command-info] start-time: 2020-03-26T17:13:07.298809Z, end-time: 2020-03-26T17:13:07.538782Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2020-03-26T17:13:11.744901Z, end-time: 2020-03-26T17:13:35.588961Z, duration: 23, exit-code: 0 python3.7 -mvirtualenv Using base prefix '/home/docs/.pyenv/versions/3.7.3' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2020-03-26T17:13:35.750634Z, end-time: 2020-03-26T17:13:36.711113Z, duration: 0, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip Requirement already up-to-date: pip in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (20.0.2) [rtd-command-info] start-time: 2020-03-26T17:13:36.871705Z, end-time: 2020-03-26T17:13:51.587344Z, duration: 14, exit-code: 0 python -m pip install --upgrade --no-cache-dir Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1 Collecting Pygments==2.3.1 Downloading Pygments-2.3.1-py2.py3-none-any.whl (849 kB) Collecting setuptools==41.0.1 Downloading setuptools-41.0.1-py2.py3-none-any.whl (575 kB) Collecting docutils==0.14 Downloading docutils-0.14-py3-none-any.whl (543 kB) Collecting mock==1.0.1 Downloading mock-1.0.1.tar.gz (818 kB) Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.5-py2.py3-none-any.whl (3.1 MB) Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) Collecting readthedocs-sphinx-ext<1.1 Downloading readthedocs_sphinx_ext-1.0.1-py2.py3-none-any.whl (14 kB) Collecting future Downloading future-0.18.2.tar.gz (829 kB) Collecting six>=1.5 Downloading six-1.14.0-py2.py3-none-any.whl (10 kB) Collecting packaging Downloading packaging-20.3-py2.py3-none-any.whl (37 kB) Collecting sphinxcontrib-websupport Downloading sphinxcontrib_websupport-1.2.1-py2.py3-none-any.whl (39 kB) Collecting requests>=2.0.0 Downloading requests-2.23.0-py2.py3-none-any.whl (58 kB) Collecting babel!=2.0,>=1.3 Downloading Babel-2.8.0-py2.py3-none-any.whl (8.6 MB) Collecting imagesize Downloading imagesize-1.2.0-py2.py3-none-any.whl (4.8 kB) Collecting Jinja2>=2.3 Downloading Jinja2-2.11.1-py2.py3-none-any.whl (126 kB) Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.0.0-py2.py3-none-any.whl (97 kB) Collecting pyparsing>=2.0.2 Downloading pyparsing-2.4.6-py2.py3-none-any.whl (67 kB) Collecting idna<3,>=2.5 Downloading idna-2.9-py2.py3-none-any.whl (58 kB) Collecting urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 Downloading urllib3-1.25.8-py2.py3-none-any.whl (125 kB) Collecting chardet<4,>=3.0.2 Downloading chardet-3.0.4-py2.py3-none-any.whl (133 kB) Collecting certifi>=2017.4.17 Downloading certifi-2019.11.28-py2.py3-none-any.whl (156 kB) Collecting pytz>=2015.7 Downloading pytz-2019.3-py2.py3-none-any.whl (509 kB) Collecting MarkupSafe>=0.23 Downloading MarkupSafe-1.1.1-cp37-cp37m-manylinux1_x86_64.whl (27 kB) Building wheels for collected packages: mock, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23754 sha256=18e6a175e9a4f00a680a08feaa009cf046ca2e53b67005dcb55318f43e90dc84 Stored in directory: /tmp/pip-ephem-wheel-cache-vatmtl2k/wheels/16/03/37/f0a64ab894c9102906f192db1a4071b7592292ad661563c69b Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491058 sha256=ba0109fdc22accc735ecee714b6fd81bf094d21069ce2c478f4ac05f1e903612 Stored in directory: /tmp/pip-ephem-wheel-cache-vatmtl2k/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0 Successfully built mock future Installing collected packages: Pygments, setuptools, docutils, mock, pillow, alabaster, future, commonmark, six, pyparsing, packaging, sphinxcontrib-websupport, idna, urllib3, chardet, certifi, requests, pytz, babel, imagesize, MarkupSafe, Jinja2, snowballstemmer, sphinx, recommonmark, sphinx-rtd-theme, readthedocs-sphinx-ext Attempting uninstall: setuptools Found existing installation: setuptools 46.1.3 Uninstalling setuptools-46.1.3: Successfully uninstalled setuptools-46.1.3 Successfully installed Jinja2-2.11.1 MarkupSafe-1.1.1 Pygments-2.3.1 alabaster-0.7.12 babel-2.8.0 certifi-2019.11.28 chardet-3.0.4 commonmark-0.8.1 docutils-0.14 future-0.18.2 idna-2.9 imagesize-1.2.0 mock-1.0.1 packaging-20.3 pillow-5.4.1 pyparsing-2.4.6 pytz-2019.3 readthedocs-sphinx-ext-1.0.1 recommonmark-0.5.0 requests-2.23.0 setuptools-41.0.1 six-1.14.0 snowballstemmer-2.0.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-websupport-1.2.1 urllib3-1.25.8 [rtd-command-info] start-time: 2020-03-26T17:13:51.749053Z, end-time: 2020-03-26T17:14:12.733701Z, duration: 20, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r requirements.txt Collecting cmake>=3.11.0 Downloading cmake-3.16.3-py3-none-manylinux2010_x86_64.whl (17.0 MB) Collecting cython>=0.29 Downloading Cython-0.29.16-cp37-cp37m-manylinux1_x86_64.whl (2.1 MB) Collecting numpy==1.16.* Downloading numpy-1.16.6-cp37-cp37m-manylinux1_x86_64.whl (17.3 MB) Requirement already satisfied: setuptools>=18.0.1 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 4)) (41.0.1) Collecting setuptools-scm>=1.5.4 Downloading setuptools_scm-3.5.0-py2.py3-none-any.whl (26 kB) Requirement already satisfied: wheel>=0.30 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 6)) (0.34.2) Collecting psutil Downloading psutil-5.7.0.tar.gz (449 kB) Building wheels for collected packages: psutil Building wheel for psutil (setup.py): started Building wheel for psutil (setup.py): finished with status 'done' Created wheel for psutil: filename=psutil-5.7.0-cp37-cp37m-linux_x86_64.whl size=276467 sha256=bef1b24683be5b8079be43592ac6a9ff86abb20f0c5e2d01bab1c2ffd484818d Stored in directory: /tmp/pip-ephem-wheel-cache-bu666s7a/wheels/b6/e7/50/aee9cc966163d74430f13f208171dee22f11efa4a4a826661c Successfully built psutil Installing collected packages: cmake, cython, numpy, setuptools-scm, psutil Successfully installed cmake-3.16.3 cython-0.29.16 numpy-1.16.6 psutil-5.7.0 setuptools-scm-3.5.0 [rtd-command-info] start-time: 2020-03-26T17:14:12.886954Z, end-time: 2020-03-26T17:22:45.213445Z, duration: 512, exit-code: 0 python ./setup.py install --force libtiledb_exists checking 'library_dirs': [] libtiledb_exists found: 'None' running install running bdist_egg GNU Make 4.1 Built for x86_64-pc-linux-gnu Copyright (C) 1988-2014 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. -- The C compiler identification is GNU 7.4.0 -- The CXX compiler identification is GNU 7.4.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Starting TileDB superbuild. -- Found Bzip2: /usr/lib/x86_64-linux-gnu/libbz2.so -- Could NOT find LZ4 (missing: LZ4_LIBRARIES LZ4_INCLUDE_DIR) -- Adding LZ4 as an external project -- Could NOT find Spdlog (missing: SPDLOG_INCLUDE_DIR) -- Adding Spdlog as an external project -- Found Zlib: /usr/lib/x86_64-linux-gnu/libz.so -- Could NOT find Zstd (missing: ZSTD_LIBRARIES ZSTD_INCLUDE_DIR) -- Adding Zstd as an external project -- Found OpenSSL: /usr/lib/x86_64-linux-gnu/libssl.so -- OpenSSL crypto: /usr/lib/x86_64-linux-gnu/libcrypto.so -- root: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/install;/usr/local/opt/openssl -- Could NOT find CURL (missing: CURL_LIBRARY CURL_INCLUDE_DIR) -- Could NOT find Curl (missing: CURL_LIBRARIES CURL_INCLUDE_DIR) CMake Warning at cmake/Modules/FindCurl_EP.cmake:106 (message): TileDB FindOpenSSL_EP did not set TILEDB_OPENSSL_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) CMake Warning at cmake/Modules/FindCurl_EP.cmake:118 (message): TileDB FindZlib_EP did not set TILEDB_ZLIB_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:87 (include) CMakeLists.txt:146 (include) -- Adding Curl as an external project -- Could NOT find AWSSDK -- Adding AWSSDK as an external project -- Could NOT find TBB (missing: TBB_LIBRARIES TBB_INCLUDE_DIR) -- Adding TBB as an external project -- Not found clang-tidy -- Not found clang-format -- Found Doxygen: /usr/bin/doxygen (found version "1.8.13") found components: doxygen dot -- Install prefix is /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/dist -- Configuring done -- Generating done -- Build files have been written to: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build Scanning dependencies of target ep_lz4 Scanning dependencies of target ep_zstd [ 1%] Creating directories for 'ep_zstd' [ 3%] Creating directories for 'ep_lz4' [ 5%] Performing download step (download, verify and extract) for 'ep_zstd' [ 7%] Performing download step (download, verify and extract) for 'ep_lz4' -- ep_lz4 download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_lz4-stamp/ep_lz4-download-*.log [ 8%] No patch step for 'ep_lz4' [ 10%] No update step for 'ep_lz4' [ 12%] Performing configure step for 'ep_lz4' -- ep_zstd download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-download-*.log [ 14%] No patch step for 'ep_zstd' [ 16%] No update step for 'ep_zstd' [ 17%] Performing configure step for 'ep_zstd' -- ep_lz4 configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_lz4-stamp/ep_lz4-configure-*.log [ 19%] Performing build step for 'ep_lz4' -- ep_zstd configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-configure-*.log [ 21%] Performing build step for 'ep_zstd' -- ep_lz4 build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_lz4-stamp/ep_lz4-build-*.log [ 23%] Performing install step for 'ep_lz4' -- ep_lz4 install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_lz4-stamp/ep_lz4-install-*.log [ 25%] Completed 'ep_lz4' [ 25%] Built target ep_lz4 Scanning dependencies of target ep_tbb [ 26%] Creating directories for 'ep_tbb' [ 28%] Performing download step (download, verify and extract) for 'ep_tbb' -- ep_tbb download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_tbb-stamp/ep_tbb-download-*.log [ 30%] No patch step for 'ep_tbb' [ 32%] No update step for 'ep_tbb' [ 33%] No configure step for 'ep_tbb' [ 35%] No build step for 'ep_tbb' [ 37%] No install step for 'ep_tbb' [ 39%] Completed 'ep_tbb' [ 39%] Built target ep_tbb Scanning dependencies of target ep_curl [ 41%] Creating directories for 'ep_curl' [ 42%] Performing download step (download, verify and extract) for 'ep_curl' -- ep_curl download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-download-*.log [ 44%] No patch step for 'ep_curl' [ 46%] No update step for 'ep_curl' [ 48%] Performing configure step for 'ep_curl' -- ep_zstd build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-build-*.log [ 50%] Performing install step for 'ep_zstd' -- ep_zstd install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_zstd-stamp/ep_zstd-install-*.log [ 51%] Completed 'ep_zstd' [ 51%] Built target ep_zstd Scanning dependencies of target ep_spdlog [ 53%] Creating directories for 'ep_spdlog' [ 55%] Performing download step (download, verify and extract) for 'ep_spdlog' -- ep_spdlog download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_spdlog-stamp/ep_spdlog-download-*.log [ 57%] No patch step for 'ep_spdlog' [ 58%] No update step for 'ep_spdlog' [ 60%] No configure step for 'ep_spdlog' [ 62%] No build step for 'ep_spdlog' [ 64%] No install step for 'ep_spdlog' [ 66%] Completed 'ep_spdlog' [ 66%] Built target ep_spdlog -- ep_curl configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-configure-*.log [ 67%] Performing build step for 'ep_curl' -- ep_curl build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-build-*.log [ 69%] Performing install step for 'ep_curl' -- ep_curl install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_curl-stamp/ep_curl-install-*.log [ 71%] Completed 'ep_curl' [ 71%] Built target ep_curl Scanning dependencies of target ep_awssdk [ 73%] Creating directories for 'ep_awssdk' [ 75%] Performing download step (download, verify and extract) for 'ep_awssdk' -- ep_awssdk download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-download-*.log [ 76%] No update step for 'ep_awssdk' [ 78%] No patch step for 'ep_awssdk' [ 80%] Performing configure step for 'ep_awssdk' -- ep_awssdk configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-configure-*.log [ 82%] Performing build step for 'ep_awssdk' -- ep_awssdk build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-build-*.log [ 83%] Performing install step for 'ep_awssdk' -- ep_awssdk install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_awssdk-stamp/ep_awssdk-install-*.log [ 85%] Completed 'ep_awssdk' [ 85%] Built target ep_awssdk Scanning dependencies of target tiledb [ 87%] Creating directories for 'tiledb' [ 89%] No download step for 'tiledb' [ 91%] No patch step for 'tiledb' [ 92%] No update step for 'tiledb' [ 94%] Performing configure step for 'tiledb' -- The C compiler identification is GNU 7.4.0 -- The CXX compiler identification is GNU 7.4.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Starting TileDB regular build. -- TileDB C++ API is not built. -- The TileDB library is compiled with stats enabled. -- Found OpenSSL: /usr/lib/x86_64-linux-gnu/libssl.so -- OpenSSL crypto: /usr/lib/x86_64-linux-gnu/libcrypto.so -- root: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/install;/usr/local/opt/openssl -- The TileDB library is compiled with S3 support. -- Found AWS SDK for C++, Version: 1.7.108, Install Root:/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/install, Platform Prefix:, Platform Dependent Libraries: pthread;crypto;ssl;z;curl -- Found AWS lib: aws-cpp-sdk-s3 (/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/install/lib/libaws-cpp-sdk-s3.a) -- Found AWS lib: aws-cpp-sdk-core (/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/install/lib/libaws-cpp-sdk-core.a) -- Found AWS lib: aws-c-common (/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/install/lib/libaws-c-common.a) -- Found AWS lib: aws-c-event-stream (/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/install/lib/libaws-c-event-stream.a) -- Found AWS lib: aws-checksums (/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/install/lib/libaws-checksums.a) -- Found CURL: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/install/lib/libcurl.a (found version "7.65.3") -- Found CURL: '/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/install/lib/libcurl.a' (found version "") -- The TileDB library is compiled with HDFS support. -- Building Intel TBB: /usr/bin/make -j2 compiler=gcc tbb_build_dir=/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_tbb-build tbb_build_prefix= extra_inc=big_iron.inc -- Found TBB: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_tbb-build/_release/libtbb.a -- Found TBB imported target: TBB::tbb -- Found Bzip2: /usr/lib/x86_64-linux-gnu/libbz2.so -- Found LZ4: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/install/lib/liblz4.a -- Found Spdlog: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/src/ep_spdlog/include -- Found Zlib: /usr/lib/x86_64-linux-gnu/libz.so -- Found Zstd: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/install/lib/libzstd.a -- Found curl-config: '/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/install/bin/curl-config' -- Adding transitive Curl library links to TileDB targets: '/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/externals/install/lib/libcurl.a;-lssl;-lcrypto;-lssl;-lcrypto;-lz' -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- Configuring done -- Generating done -- Build files have been written to: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build/tiledb [ 96%] Performing build step for 'tiledb' Scanning dependencies of target TILEDB_CORE_OBJECTS [ 0%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/array/array.cc.o [ 1%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/array_schema/array_schema.cc.o [ 3%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/array_schema/attribute.cc.o [ 3%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/array_schema/dimension.cc.o [ 4%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/array_schema/domain.cc.o [ 6%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/buffer/buffer.cc.o [ 7%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/buffer/buffer_list.cc.o [ 7%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/buffer/const_buffer.cc.o [ 9%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/buffer/preallocated_buffer.cc.o [ 10%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/c_api/tiledb.cc.o [ 10%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/cache/lru_cache.cc.o [ 12%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/compressors/bzip_compressor.cc.o [ 14%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/compressors/dd_compressor.cc.o [ 15%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/compressors/gzip_compressor.cc.o [ 15%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/compressors/lz4_compressor.cc.o [ 17%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/compressors/rle_compressor.cc.o [ 18%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/compressors/zstd_compressor.cc.o [ 18%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/config/config.cc.o [ 20%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/config/config_iter.cc.o [ 21%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/encryption/encryption.cc.o [ 23%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/encryption/encryption_key.cc.o [ 23%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/encryption/encryption_key_validation.cc.o [ 25%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/encryption/encryption_openssl.cc.o [ 26%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/encryption/encryption_win32.cc.o [ 26%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filesystem/hdfs_filesystem.cc.o [ 28%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filesystem/posix.cc.o [ 29%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filesystem/s3.cc.o [ 31%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filesystem/s3_thread_pool_executor.cc.o [ 31%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filesystem/vfs.cc.o [ 32%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filesystem/vfs_file_handle.cc.o [ 34%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filesystem/win.cc.o [ 35%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filter/bit_width_reduction_filter.cc.o [ 35%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filter/bitshuffle_filter.cc.o [ 37%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filter/byteshuffle_filter.cc.o [ 39%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filter/checksum_md5_filter.cc.o [ 39%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filter/checksum_sha256_filter.cc.o [ 40%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filter/compression_filter.cc.o [ 42%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filter/encryption_aes256gcm_filter.cc.o [ 43%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filter/filter.cc.o [ 43%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filter/filter_buffer.cc.o [ 45%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filter/filter_pipeline.cc.o [ 46%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filter/filter_storage.cc.o [ 46%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filter/noop_filter.cc.o [ 48%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filter/positive_delta_filter.cc.o [ 50%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/fragment/fragment_metadata.cc.o [ 51%] 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CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/misc/stats.cc.o [ 64%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/misc/status.cc.o [ 64%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/misc/thread_pool.cc.o [ 65%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/misc/uri.cc.o [ 67%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/misc/utils.cc.o [ 67%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/misc/uuid.cc.o [ 68%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/misc/win_constants.cc.o [ 70%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/misc/work_arounds.cc.o [ 71%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/query/query.cc.o [ 71%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/query/reader.cc.o [ 73%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/query/result_cell_slab_iter.cc.o [ 75%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/query/writer.cc.o [ 75%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/query/dense_cell_range_iter.cc.o [ 76%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/rest/rest_client.cc.o [ 78%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/rtree/rtree.cc.o [ 79%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/serialization/array_schema.cc.o [ 79%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/serialization/query.cc.o [ 81%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/storage_manager/context.cc.o [ 82%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/storage_manager/consolidator.cc.o [ 82%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/storage_manager/open_array.cc.o [ 84%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/storage_manager/storage_manager.cc.o [ 85%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/subarray/cell_slab_iter.cc.o [ 87%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/subarray/subarray.cc.o [ 87%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/subarray/subarray_partitioner.cc.o [ 89%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/tile/tile.cc.o [ 90%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/tile/tile_io.cc.o [ 90%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/__/external/src/md5/md5.cc.o [ 92%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/__/external/src/bitshuffle/iochain.cc.o [ 93%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/__/external/src/bitshuffle/bitshuffle_core.cc.o [ 95%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/__/external/src/blosc/shuffle.cc.o [ 95%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/__/external/src/blosc/shuffle-avx2.cc.o [ 96%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/__/external/src/blosc/shuffle-generic.cc.o [ 98%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/__/external/src/blosc/shuffle-sse2.cc.o [ 98%] Built target TILEDB_CORE_OBJECTS Scanning dependencies of target tiledb_shared [100%] Linking CXX shared library libtiledb.so [100%] Built target tiledb_shared [ 98%] No install step for 'tiledb' [100%] Completed 'tiledb' [100%] Built target tiledb Scanning dependencies of target install-tiledb [ 98%] Built target TILEDB_CORE_OBJECTS [100%] Built target tiledb_shared Install the project... -- Install configuration: "Release" -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/dist/lib/libtiledb.so.1.7 -- Set runtime path of "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/dist/lib/libtiledb.so.1.7" to "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/dist/lib" -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/dist/lib/libtiledb.so -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/dist/include/tiledb/tiledb.h -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/dist/include/tiledb/tiledb_enum.h -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/dist/include/tiledb/tiledb_version.h -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/dist/include/tiledb/tiledb_export.h -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/dist/lib/cmake/TileDB/TileDBConfig.cmake -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/dist/lib/cmake/TileDB/TileDBTargets.cmake -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/dist/lib/cmake/TileDB/TileDBTargets-release.cmake Built target install-tiledb libtiledb_exists checking 'library_dirs': [] libtiledb_exists found: 'None' Downloading TileDB package from 1.7.6... Building libtiledb in directory /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/build... CMake configure command: ['cmake', '-DCMAKE_INSTALL_PREFIX=/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/dist', '-DTILEDB_TESTS=OFF', '-DTILEDB_S3=ON', '-DTILEDB_HDFS=ON', '-DTILEDB_INSTALL_LIBDIR=lib', '-DTILEDB_CPP_API=OFF', '-DTILEDB_LOG_OUTPUT_ON_FAILURE=ON', '-DTILEDB_FORCE_ALL_DEPS:BOOL=OFF', '-DTILEDB_SERIALIZATION:BOOL=OFF', '-DCMAKE_BUILD_TYPE=Release', '/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6'] Copying file /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/dist/lib/libtiledb.so to /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/tiledb/native/libtiledb.so ------------------- libtiledb_objects: ['native/libtiledb.so*'] ------------------- running egg_info creating tiledb.egg-info writing tiledb.egg-info/PKG-INFO writing dependency_links to tiledb.egg-info/dependency_links.txt writing requirements to tiledb.egg-info/requires.txt writing top-level names to tiledb.egg-info/top_level.txt writing manifest file 'tiledb.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'tiledb.egg-info/SOURCES.txt' installing library code to build/bdist.linux-x86_64/egg running install_lib running build_py creating build/lib.linux-x86_64-3.7 creating build/lib.linux-x86_64-3.7/tiledb copying tiledb/highlevel.py -> build/lib.linux-x86_64-3.7/tiledb copying tiledb/__init__.py -> build/lib.linux-x86_64-3.7/tiledb copying tiledb/version.py -> build/lib.linux-x86_64-3.7/tiledb copying tiledb/array.py -> build/lib.linux-x86_64-3.7/tiledb copying tiledb/metadata.py -> build/lib.linux-x86_64-3.7/tiledb copying tiledb/multirange_indexing.py -> build/lib.linux-x86_64-3.7/tiledb creating build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/test_metadata.py -> build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/test_pandas_dataframe.py -> build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/test_dask.py -> build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/test_domain_index.py -> build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/__init__.py -> build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/all.py -> build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/test_multi_index.py -> build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/test_libtiledb.py -> build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/test_util.py -> build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/test_examples.py -> build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/common.py -> build/lib.linux-x86_64-3.7/tiledb/tests creating build/lib.linux-x86_64-3.7/tiledb/native copying tiledb/native/libtiledb.so -> build/lib.linux-x86_64-3.7/tiledb/native running build_ext libtiledb_exists checking 'library_dirs': ['/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/dist/lib'] libtiledb_exists found: '/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/dist/lib/libtiledb.so' cythoning tiledb/libtiledb.pyx to tiledb/libtiledb.cpp building 'tiledb.libtiledb' extension creating build/temp.linux-x86_64-3.7 creating build/temp.linux-x86_64-3.7/tiledb gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/dist/include -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/numpy/core/include -I/home/docs/.pyenv/versions/3.7.3/include/python3.7m -c tiledb/libtiledb.cpp -o build/temp.linux-x86_64-3.7/tiledb/libtiledb.o -std=c++11 -Wno-deprecated-declarations In file included from /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822:0, from /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from tiledb/libtiledb.cpp:623: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ tiledb/indexing.pyx: In function ‘PyObject* __pyx_f_6tiledb_9libtiledb_execute_multi_index(__pyx_obj_6tiledb_9libtiledb_Array*, tiledb_query_t*, PyObject*, PyObject*)’: tiledb/indexing.pyx:177:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for attr_idx in range(nattr): ~~~~~~~~~~~^ tiledb/indexing.pyx:230:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for attr_idx in range(nattr): ~~~~~~~~~~~^ tiledb/indexing.pyx:255:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for attr_idx in range(nattr): ~~~~~~~~~~ ^ tiledb/indexing.pyx: In function ‘PyObject* __pyx_f_6tiledb_9libtiledb_multi_index(__pyx_obj_6tiledb_9libtiledb_Array*, PyObject*, PyObject*, int, __pyx_opt_args_6tiledb_9libtiledb_multi_index*)’: tiledb/indexing.pyx:314:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for dim_idx in range(len(ranges)): ~~~~~~~~~~~^~~~ tiledb/indexing.pyx:322:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for range_idx in range(len(dim_ranges)): ~~~~~~~~~~~^~~~~~~~~~~~ tiledb/libtiledb.pyx: In function ‘PyObject* __pyx_f_6tiledb_9libtiledb_5Array__unpack_varlen_query(__pyx_obj_6tiledb_9libtiledb_Array*, __pyx_obj_6tiledb_9libtiledb_ReadQuery*, PyObject*)’: tiledb/libtiledb.pyx:3518:46: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] if ((el_ptr[0]) == NULL and el_bytelen == 1): ^ tiledb/libtiledb.pyx: In function ‘int __pyx_pf_6tiledb_9libtiledb_9ReadQuery___init__(__pyx_obj_6tiledb_9libtiledb_ReadQuery*, __pyx_obj_6tiledb_9libtiledb_Array*, PyArrayObject*, PyObject*, tiledb_layout_t)’: tiledb/libtiledb.pyx:3616:41: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for i in range(nattr): ~~~~~ ^ tiledb/libtiledb.pyx:3669:43: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for i in range(nattr): ~~~~~~~ ^ tiledb/libtiledb.pyx:3704:43: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for update_res_bytes_idx in range(nattr): ~~~~~~~~~~~^~~~~~~~~~~~ tiledb/libtiledb.pyx:3729:41: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for i in range(nattr): ~~~~~ ^ tiledb/libmetadata.pyx: At global scope: tiledb/libmetadata.pyx:275:18: warning: ‘PyObject* __pyx_f_6tiledb_9libtiledb_put_metadata_dict(__pyx_obj_6tiledb_9libtiledb_Array*, PyObject*)’ defined but not used [-Wunused-function] cdef put_metadata_dict(Array array, kv): ^~~~~~~~~~~~~~~~~~~~~~~ tiledb/libmetadata.pyx:20:18: warning: ‘PyObject* __pyx_f_6tiledb_9libtiledb_metadata_value_check(PyObject*)’ defined but not used [-Wunused-function] cdef object metadata_value_check(val): ^~~~~~~~~~~~~~~~~~~~~ tiledb/np2buf.pyx:22:18: warning: ‘PyObject* __pyx_f_6tiledb_9libtiledb__varlen_type_compat(PyObject*, PyObject*)’ defined but not used [-Wunused-function] cdef _varlen_type_compat(object reftype, object val): ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tiledb/libmetadata.pyx: In function ‘PyObject* __pyx_pf_6tiledb_9libtiledb_16put_metadata(PyObject*, __pyx_obj_6tiledb_9libtiledb_Array*, PyObject*, PyObject*)’: tiledb/libmetadata.pyx:222:14: warning: ‘__pyx_v_data_ptr’ may be used uninitialized in this function [-Wmaybe-uninitialized] rc = tiledb_array_put_metadata( ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ tiledb/libmetadata.pyx:187:15: note: ‘__pyx_v_data_ptr’ was declared here key, value): ^ ~~~~~~~~~~~~ g++ -pthread -shared -L/home/docs/.pyenv/versions/3.7.3/lib -L/home/docs/.pyenv/versions/3.7.3/lib build/temp.linux-x86_64-3.7/tiledb/libtiledb.o -L/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.7.6/dist/lib -ltiledb -o build/lib.linux-x86_64-3.7/tiledb/libtiledb.cpython-37m-x86_64-linux-gnu.so creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/egg creating build/bdist.linux-x86_64/egg/tiledb creating build/bdist.linux-x86_64/egg/tiledb/tests copying build/lib.linux-x86_64-3.7/tiledb/tests/test_metadata.py -> build/bdist.linux-x86_64/egg/tiledb/tests copying build/lib.linux-x86_64-3.7/tiledb/tests/test_pandas_dataframe.py -> build/bdist.linux-x86_64/egg/tiledb/tests copying build/lib.linux-x86_64-3.7/tiledb/tests/test_dask.py -> build/bdist.linux-x86_64/egg/tiledb/tests copying build/lib.linux-x86_64-3.7/tiledb/tests/test_domain_index.py -> build/bdist.linux-x86_64/egg/tiledb/tests copying build/lib.linux-x86_64-3.7/tiledb/tests/__init__.py -> build/bdist.linux-x86_64/egg/tiledb/tests copying build/lib.linux-x86_64-3.7/tiledb/tests/all.py -> build/bdist.linux-x86_64/egg/tiledb/tests copying build/lib.linux-x86_64-3.7/tiledb/tests/test_multi_index.py -> build/bdist.linux-x86_64/egg/tiledb/tests copying build/lib.linux-x86_64-3.7/tiledb/tests/test_libtiledb.py -> build/bdist.linux-x86_64/egg/tiledb/tests copying build/lib.linux-x86_64-3.7/tiledb/tests/test_util.py -> build/bdist.linux-x86_64/egg/tiledb/tests copying build/lib.linux-x86_64-3.7/tiledb/tests/test_examples.py -> build/bdist.linux-x86_64/egg/tiledb/tests copying build/lib.linux-x86_64-3.7/tiledb/tests/common.py -> build/bdist.linux-x86_64/egg/tiledb/tests copying build/lib.linux-x86_64-3.7/tiledb/highlevel.py -> build/bdist.linux-x86_64/egg/tiledb copying build/lib.linux-x86_64-3.7/tiledb/__init__.py -> build/bdist.linux-x86_64/egg/tiledb copying build/lib.linux-x86_64-3.7/tiledb/libtiledb.cpython-37m-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/egg/tiledb copying build/lib.linux-x86_64-3.7/tiledb/version.py -> build/bdist.linux-x86_64/egg/tiledb copying build/lib.linux-x86_64-3.7/tiledb/array.py -> build/bdist.linux-x86_64/egg/tiledb creating build/bdist.linux-x86_64/egg/tiledb/native copying build/lib.linux-x86_64-3.7/tiledb/native/libtiledb.so -> build/bdist.linux-x86_64/egg/tiledb/native copying build/lib.linux-x86_64-3.7/tiledb/metadata.py -> build/bdist.linux-x86_64/egg/tiledb copying build/lib.linux-x86_64-3.7/tiledb/multirange_indexing.py -> build/bdist.linux-x86_64/egg/tiledb byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/test_metadata.py to test_metadata.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/test_pandas_dataframe.py to test_pandas_dataframe.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/test_dask.py to test_dask.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/test_domain_index.py to test_domain_index.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/all.py to all.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/test_multi_index.py to test_multi_index.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/test_libtiledb.py to test_libtiledb.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/test_util.py to test_util.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/test_examples.py to test_examples.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/common.py to common.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/highlevel.py to highlevel.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/version.py to version.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/array.py to array.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/metadata.py to metadata.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/multirange_indexing.py to multirange_indexing.cpython-37.pyc creating stub loader for tiledb/libtiledb.cpython-37m-x86_64-linux-gnu.so byte-compiling build/bdist.linux-x86_64/egg/tiledb/libtiledb.py to libtiledb.cpython-37.pyc creating build/bdist.linux-x86_64/egg/EGG-INFO copying tiledb.egg-info/PKG-INFO -> build/bdist.linux-x86_64/egg/EGG-INFO copying tiledb.egg-info/SOURCES.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying tiledb.egg-info/dependency_links.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying tiledb.egg-info/not-zip-safe -> build/bdist.linux-x86_64/egg/EGG-INFO copying tiledb.egg-info/requires.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying tiledb.egg-info/top_level.txt -> build/bdist.linux-x86_64/egg/EGG-INFO writing build/bdist.linux-x86_64/egg/EGG-INFO/native_libs.txt creating dist creating 'dist/tiledb-0.5.8-py3.7-linux-x86_64.egg' and adding 'build/bdist.linux-x86_64/egg' to it removing 'build/bdist.linux-x86_64/egg' (and everything under it) Processing tiledb-0.5.8-py3.7-linux-x86_64.egg creating /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/tiledb-0.5.8-py3.7-linux-x86_64.egg Extracting tiledb-0.5.8-py3.7-linux-x86_64.egg to /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages Adding tiledb 0.5.8 to easy-install.pth file Installed /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/tiledb-0.5.8-py3.7-linux-x86_64.egg Processing dependencies for tiledb==0.5.8 Searching for wheel==0.34.2 Best match: wheel 0.34.2 Adding wheel 0.34.2 to easy-install.pth file Installing wheel script to /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin Using /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages Searching for numpy==1.16.6 Best match: numpy 1.16.6 Adding numpy 1.16.6 to easy-install.pth file Installing f2py script to /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin Installing f2py3 script to /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin Installing f2py3.7 script to /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin Using /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages Finished processing dependencies for tiledb==0.5.8 /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/setuptools_scm/git.py:68: UserWarning: "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable" is shallow and may cause errors warnings.warn('"{}" is shallow and may cause errors'.format(wd.path)) /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/tiledb/libtiledb.pxd tree = Parsing.p_module(s, pxd, full_module_name) warning: tiledb/libtiledb.pyx:4760:0: Overriding cdef method with def method. [rtd-command-info] start-time: 2020-03-26T17:22:47.190195Z, end-time: 2020-03-26T17:22:47.409651Z, duration: 0, exit-code: 0 cat doc/source/conf.py #!/usr/bin/env python3 # -*- coding: utf-8 -*- # # -- Imports configuration ------------------------------------------------- import os import sys from os.path import abspath, join, dirname sys.path.insert(0, abspath(join(dirname(__file__)))) # -- ReadTheDocs configuration --------------------------------------------- # Special handling on ReadTheDocs builds. # Some of this code is from https://github.com/robotpy/robotpy-docs/blob/master/conf.py readthedocs = os.environ.get('READTHEDOCS', None) == 'True' rtd_version = os.environ.get('READTHEDOCS_VERSION', 'latest') rtd_version = rtd_version if rtd_version in ['stable', 'latest'] else 'stable' # -- Project information ----------------------------------------------------- project = 'TileDB-Py' copyright = '2019, TileDB, Inc.' author = 'TileDB, Inc.' # The short X.Y version version = '0.4' # The full version, including alpha/beta/rc tags release = '0.4.0' # -- General configuration --------------------------------------------------- # If your documentation needs a minimal Sphinx version, state it here. # # needs_sphinx = '1.0' # Add any Sphinx extension module names here, as strings. They can be # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom # ones. extensions = [ 'sphinx.ext.autodoc', 'sphinx.ext.doctest', 'sphinx.ext.intersphinx', ] # Mapping for linking between RTD subprojects. if readthedocs: intersphinx_mapping = { 'tiledb': ('https://tiledb-inc-tiledb.readthedocs-hosted.com/en/%s/' % rtd_version, None), 'tiledb-py': ('https://tiledb-inc-tiledb.readthedocs-hosted.com/projects/python-api/en/%s/' % rtd_version, None), 'python': ('https://docs.python.org/', None) } # Add any paths that contain templates here, relative to this directory. templates_path = ['_templates'] # The suffix(es) of source filenames. # You can specify multiple suffix as a list of string: # # source_suffix = ['.rst', '.md'] source_suffix = '.rst' # The master toctree document. master_doc = 'index' # The language for content autogenerated by Sphinx. Refer to documentation # for a list of supported languages. # # This is also used if you do content translation via gettext catalogs. # Usually you set "language" from the command line for these cases. language = None # List of patterns, relative to source directory, that match files and # directories to ignore when looking for source files. # This pattern also affects html_static_path and html_extra_path . exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store'] # The name of the Pygments (syntax highlighting) style to use. pygments_style = 'friendly' # -- Options for HTML output ------------------------------------------------- html_static_path = ['_static'] html_logo = '_static/tileDB_uppercase_600_112.png' html_favicon = '_static/favicon.ico' if readthedocs: html_theme = 'default' else: import sphinx_rtd_theme html_theme = 'sphinx_rtd_theme' html_theme_path = [sphinx_rtd_theme.get_html_theme_path()] # -- Options for HTMLHelp output --------------------------------------------- # Output file base name for HTML help builder. htmlhelp_basename = 'TileDB-Pydoc' # -- Options for LaTeX output ------------------------------------------------ latex_elements = { # The paper size ('letterpaper' or 'a4paper'). # # 'papersize': 'letterpaper', # The font size ('10pt', '11pt' or '12pt'). # # 'pointsize': '10pt', # Additional stuff for the LaTeX preamble. # # 'preamble': '', # Latex figure (float) alignment # # 'figure_align': 'htbp', } # Grouping the document tree into LaTeX files. List of tuples # (source start file, target name, title, # author, documentclass [howto, manual, or own class]). latex_documents = [ (master_doc, 'TileDB-Py.tex', 'TileDB-Py Documentation', 'TileDB, Inc.', 'manual'), ] # -- Options for manual page output ------------------------------------------ # One entry per manual page. List of tuples # (source start file, name, description, authors, manual section). man_pages = [ (master_doc, 'tiledb-py', 'TileDB-Py Documentation', [author], 1) ] # -- Options for Texinfo output ---------------------------------------------- # Grouping the document tree into Texinfo files. List of tuples # (source start file, target name, title, author, # dir menu entry, description, category) texinfo_documents = [ (master_doc, 'TileDB-Py', 'TileDB-Py Documentation', author, 'TileDB-Py', 'One line description of project.', 'Miscellaneous'), ] # -- Custom Document processing ---------------------------------------------- # Generate the sidebar automatically so that it is identical across all subprojects. # This (and gensidebar.py) from https://github.com/robotpy/robotpy-docs import gensidebar gensidebar.generate_sidebar({'on_rtd': readthedocs, 'rtd_version': rtd_version}, 'tiledb-py') # -- Custom setup ----------------------------------------------------------- def setup(app): app.add_stylesheet('custom.css') ########################################################################### # auto-created readthedocs.org specific configuration # ########################################################################### # # The following code was added during an automated build on readthedocs.org # It is auto created and injected for every build. The result is based on the # conf.py.tmpl file found in the readthedocs.org codebase: # https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl # import importlib import sys import os.path from six import string_types from sphinx import version_info # Get suffix for proper linking to GitHub # This is deprecated in Sphinx 1.3+, # as each page can have its own suffix if globals().get('source_suffix', False): if isinstance(source_suffix, string_types): SUFFIX = source_suffix elif isinstance(source_suffix, (list, tuple)): # Sphinx >= 1.3 supports list/tuple to define multiple suffixes SUFFIX = source_suffix[0] elif isinstance(source_suffix, dict): # Sphinx >= 1.8 supports a mapping dictionary for multiple suffixes SUFFIX = list(source_suffix.keys())[0] # make a ``list()`` for py2/py3 compatibility else: # default to .rst SUFFIX = '.rst' else: SUFFIX = '.rst' # Add RTD Static Path. Add to the end because it overwrites previous files. if not 'html_static_path' in globals(): html_static_path = [] if os.path.exists('_static'): html_static_path.append('_static') # Add RTD Theme only if they aren't overriding it already using_rtd_theme = ( ( 'html_theme' in globals() and html_theme in ['default'] and # Allow people to bail with a hack of having an html_style 'html_style' not in globals() ) or 'html_theme' not in globals() ) if using_rtd_theme: theme = importlib.import_module('sphinx_rtd_theme') html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} if 'html_theme_path' in globals(): html_theme_path.append(theme.get_html_theme_path()) else: html_theme_path = [theme.get_html_theme_path()] if globals().get('websupport2_base_url', False): websupport2_base_url = 'https://readthedocs.com/websupport' websupport2_static_url = 'https://assets.readthedocs.com/' #Add project information to the template context. context = { 'using_theme': using_rtd_theme, 'html_theme': html_theme, 'current_version': "stable", 'version_slug': "stable", 'MEDIA_URL': "https://media.readthedocs.com/media/", 'STATIC_URL': "https://assets.readthedocs.com/", 'PRODUCTION_DOMAIN': "readthedocs.com", 'versions': [ ("latest", "/en/latest/"), ("stable", "/en/stable/"), ("0.3.0", "/en/0.3.0/"), ("0.2.0", "/en/0.2.0/"), ], 'downloads': [ ], 'subprojects': [ ], 'slug': 'tiledb-inc-tiledb-py', 'name': u'TileDB-Py', 'rtd_language': u'en', 'programming_language': u'words', 'canonical_url': 'https://tiledb-inc-tiledb.readthedocs-hosted.com/projects/tiledb-py/en/stable/', 'analytics_code': '', 'single_version': False, 'conf_py_path': '/doc/source/', 'api_host': 'https://readthedocs.com', 'proxied_api_host': '/_', 'github_user': 'TileDB-Inc', 'github_repo': 'TileDB-Py', 'github_version': 'de2aff00b97498420199a9d16c8375df70e94780', 'display_github': True, 'bitbucket_user': 'None', 'bitbucket_repo': 'None', 'bitbucket_version': 'de2aff00b97498420199a9d16c8375df70e94780', 'display_bitbucket': False, 'gitlab_user': 'None', 'gitlab_repo': 'None', 'gitlab_version': 'de2aff00b97498420199a9d16c8375df70e94780', 'display_gitlab': False, 'READTHEDOCS': True, 'using_theme': (html_theme == "default"), 'new_theme': (html_theme == "sphinx_rtd_theme"), 'source_suffix': SUFFIX, 'ad_free': False, 'user_analytics_code': '', 'global_analytics_code': 'UA-17997319-2', 'commit': 'de2aff00', } if 'html_context' in globals(): html_context.update(context) else: html_context = context # Add custom RTD extension if 'extensions' in globals(): # Insert at the beginning because it can interfere # with other extensions. # See https://github.com/rtfd/readthedocs.org/pull/4054 extensions.insert(0, "readthedocs_ext.readthedocs") else: extensions = ["readthedocs_ext.readthedocs"] # Add External version warning banner to the external version documentation if 'tag' == 'external': extensions.insert(1, "readthedocs_ext.external_version_warning") project_language = 'en' # User's Sphinx configurations language_user = globals().get('language', None) latex_engine_user = globals().get('latex_engine', None) latex_elements_user = globals().get('latex_elements', None) # Remove this once xindy gets installed in Docker image and XINDYOPS # env variable is supported # https://github.com/rtfd/readthedocs-docker-images/pull/98 latex_use_xindy = False chinese = any([ language_user in ('zh_CN', 'zh_TW'), project_language in ('zh_CN', 'zh_TW'), ]) japanese = any([ language_user == 'ja', project_language == 'ja', ]) if chinese: latex_engine = latex_engine_user or 'xelatex' latex_elements_rtd = { 'preamble': '\\usepackage[UTF8]{ctex}\n', } latex_elements = latex_elements_user or latex_elements_rtd elif japanese: latex_engine = latex_engine_user or 'platex' [rtd-command-info] start-time: 2020-03-26T17:22:47.569977Z, end-time: 2020-03-26T17:22:51.699429Z, duration: 4, exit-code: 0 python sphinx-build -T -b readthedocs -d _build/doctrees-readthedocs -D language=en . _build/html Running Sphinx v1.8.5 loading translations [en]... done making output directory... loading intersphinx inventory from https://tiledb-inc-tiledb.readthedocs-hosted.com/en/stable/objects.inv... loading intersphinx inventory from https://tiledb-inc-tiledb.readthedocs-hosted.com/projects/python-api/en/stable/objects.inv... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory 'https://tiledb-inc-tiledb.readthedocs-hosted.com/projects/python-api/en/stable/objects.inv' not fetchable due to : 404 Client Error: Not Found for url: https://tiledb-inc-tiledb.readthedocs-hosted.com/projects/python-api/en/stable/objects.inv loading intersphinx inventory from https://docs.python.org/objects.inv... intersphinx inventory has moved: https://docs.python.org/objects.inv -> https://docs.python.org/3/objects.inv building [mo]: targets for 0 po files that are out of date building [readthedocs]: targets for 2 source files that are out of date updating environment: 2 added, 0 changed, 0 removed reading sources... [ 50%] index reading sources... [100%] python-api looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 50%] index writing output... [100%] python-api generating indices... genindex writing additional pages... search copying static files... done copying readthedocs static files... done copying searchtools... done copying extra files... done dumping search index in English (code: en) ... done dumping object inventory... done build succeeded, 1 warning. The HTML pages are in _build/html.