Read the Docs build information Build id: 307061 Project: d-wave-systems-dwave-neal Version: latest Commit: 115efb42b82e80ea44ce9a4c6500945510527681 Date: 2020-03-25T19:12:19.440300Z State: finished Success: True [rtd-command-info] start-time: 2020-03-25T19:12:22.258947Z, end-time: 2020-03-25T19:12:23.395962Z, duration: 1, exit-code: 0 git clone --no-single-branch --depth 50 https://github.com/dwavesystems/dwave-neal.git . Cloning into '.'... [rtd-command-info] start-time: 2020-03-25T19:12:23.882538Z, end-time: 2020-03-25T19:12:24.195387Z, duration: 0, exit-code: 0 git checkout --force origin/master Note: checking out 'origin/master'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at 115efb4 Merge pull request #77 from randomir/update-reqs [rtd-command-info] start-time: 2020-03-25T19:12:24.352163Z, end-time: 2020-03-25T19:12:24.652767Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2020-03-25T19:12:26.052102Z, end-time: 2020-03-25T19:12:31.121749Z, duration: 5, exit-code: 0 python3.7 -mvirtualenv Using base prefix '/home/docs/.pyenv/versions/3.7.3' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-neal/envs/latest/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-neal/envs/latest/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2020-03-25T19:12:31.291093Z, end-time: 2020-03-25T19:12:32.297507Z, duration: 1, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip Requirement already up-to-date: pip in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-neal/envs/latest/lib/python3.7/site-packages (20.0.2) [rtd-command-info] start-time: 2020-03-25T19:12:32.458595Z, end-time: 2020-03-25T19:12:43.737327Z, duration: 11, exit-code: 0 python -m pip install --upgrade --no-cache-dir Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1 Collecting Pygments==2.3.1 Downloading Pygments-2.3.1-py2.py3-none-any.whl (849 kB) Collecting setuptools==41.0.1 Downloading setuptools-41.0.1-py2.py3-none-any.whl (575 kB) Collecting docutils==0.14 Downloading docutils-0.14-py3-none-any.whl (543 kB) Collecting mock==1.0.1 Downloading mock-1.0.1.tar.gz (818 kB) Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.5-py2.py3-none-any.whl (3.1 MB) Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) Collecting readthedocs-sphinx-ext<1.1 Downloading readthedocs_sphinx_ext-1.0.1-py2.py3-none-any.whl (14 kB) Collecting future Downloading future-0.18.2.tar.gz (829 kB) Collecting imagesize Downloading imagesize-1.2.0-py2.py3-none-any.whl (4.8 kB) Collecting six>=1.5 Downloading six-1.14.0-py2.py3-none-any.whl (10 kB) Collecting babel!=2.0,>=1.3 Downloading Babel-2.8.0-py2.py3-none-any.whl (8.6 MB) Collecting requests>=2.0.0 Downloading requests-2.23.0-py2.py3-none-any.whl (58 kB) Collecting sphinxcontrib-websupport Downloading sphinxcontrib_websupport-1.2.1-py2.py3-none-any.whl (39 kB) Collecting packaging Downloading packaging-20.3-py2.py3-none-any.whl (37 kB) Collecting Jinja2>=2.3 Downloading Jinja2-2.11.1-py2.py3-none-any.whl (126 kB) Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.0.0-py2.py3-none-any.whl (97 kB) Collecting pytz>=2015.7 Downloading pytz-2019.3-py2.py3-none-any.whl (509 kB) Collecting idna<3,>=2.5 Downloading idna-2.9-py2.py3-none-any.whl (58 kB) Collecting certifi>=2017.4.17 Downloading certifi-2019.11.28-py2.py3-none-any.whl (156 kB) Collecting urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 Downloading urllib3-1.25.8-py2.py3-none-any.whl (125 kB) Collecting chardet<4,>=3.0.2 Downloading chardet-3.0.4-py2.py3-none-any.whl (133 kB) Collecting pyparsing>=2.0.2 Downloading pyparsing-2.4.6-py2.py3-none-any.whl (67 kB) Collecting MarkupSafe>=0.23 Downloading MarkupSafe-1.1.1-cp37-cp37m-manylinux1_x86_64.whl (27 kB) Building wheels for collected packages: mock, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23754 sha256=4bf076430d970eeb1e3032542a2000891e65a5963448e82478e3c51ec9dd62d0 Stored in directory: /tmp/pip-ephem-wheel-cache-ypodmgeg/wheels/16/03/37/f0a64ab894c9102906f192db1a4071b7592292ad661563c69b Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491058 sha256=d48e5f27b456aba97530de1eb9d0d19ecb7976978931fd9261f91c1cb3d3324e Stored in directory: /tmp/pip-ephem-wheel-cache-ypodmgeg/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0 Successfully built mock future Installing collected packages: Pygments, setuptools, docutils, mock, pillow, alabaster, future, commonmark, imagesize, six, pytz, babel, idna, certifi, urllib3, chardet, requests, sphinxcontrib-websupport, pyparsing, packaging, MarkupSafe, Jinja2, snowballstemmer, sphinx, recommonmark, sphinx-rtd-theme, readthedocs-sphinx-ext Attempting uninstall: setuptools Found existing installation: setuptools 46.1.3 Uninstalling setuptools-46.1.3: Successfully uninstalled setuptools-46.1.3 Successfully installed Jinja2-2.11.1 MarkupSafe-1.1.1 Pygments-2.3.1 alabaster-0.7.12 babel-2.8.0 certifi-2019.11.28 chardet-3.0.4 commonmark-0.8.1 docutils-0.14 future-0.18.2 idna-2.9 imagesize-1.2.0 mock-1.0.1 packaging-20.3 pillow-5.4.1 pyparsing-2.4.6 pytz-2019.3 readthedocs-sphinx-ext-1.0.1 recommonmark-0.5.0 requests-2.23.0 setuptools-41.0.1 six-1.14.0 snowballstemmer-2.0.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-websupport-1.2.1 urllib3-1.25.8 [rtd-command-info] start-time: 2020-03-25T19:12:43.895526Z, end-time: 2020-03-25T19:12:51.687472Z, duration: 7, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r requirements.txt Ignoring colorama: markers 'sys_platform == "win32"' don't match your environment Collecting cython==0.28.5 Downloading Cython-0.28.5-cp37-cp37m-manylinux1_x86_64.whl (3.4 MB) Collecting numpy==1.18.1 Downloading numpy-1.18.1-cp37-cp37m-manylinux1_x86_64.whl (20.1 MB) Collecting dimod==0.9.1 Downloading dimod-0.9.1-cp37-cp37m-manylinux1_x86_64.whl (4.6 MB) Collecting six==1.12.0 Downloading six-1.12.0-py2.py3-none-any.whl (10 kB) Requirement already satisfied: mock in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-neal/envs/latest/lib/python3.7/site-packages (from -r requirements.txt (line 7)) (1.0.1) Collecting coverage Downloading coverage-5.0.4-cp37-cp37m-manylinux1_x86_64.whl (227 kB) Collecting codecov Downloading codecov-2.0.22-py2.py3-none-any.whl (15 kB) Requirement already satisfied: sphinx in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-neal/envs/latest/lib/python3.7/site-packages (from -r requirements.txt (line 15)) (1.8.5) Requirement already satisfied: sphinx_rtd_theme in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-neal/envs/latest/lib/python3.7/site-packages (from -r requirements.txt (line 16)) (0.4.3) Requirement already satisfied: recommonmark in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-neal/envs/latest/lib/python3.7/site-packages (from -r requirements.txt (line 17)) (0.5.0) Requirement already satisfied: requests>=2.7.9 in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-neal/envs/latest/lib/python3.7/site-packages (from codecov->-r requirements.txt (line 10)) (2.23.0) Requirement already satisfied: packaging in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-neal/envs/latest/lib/python3.7/site-packages (from sphinx->-r requirements.txt (line 15)) (20.3) Requirement already satisfied: sphinxcontrib-websupport in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-neal/envs/latest/lib/python3.7/site-packages (from sphinx->-r requirements.txt (line 15)) (1.2.1) Requirement already satisfied: alabaster<0.8,>=0.7 in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-neal/envs/latest/lib/python3.7/site-packages (from sphinx->-r requirements.txt (line 15)) (0.7.12) Requirement already satisfied: babel!=2.0,>=1.3 in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-neal/envs/latest/lib/python3.7/site-packages (from sphinx->-r requirements.txt (line 15)) (2.8.0) Requirement already satisfied: docutils>=0.11 in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-neal/envs/latest/lib/python3.7/site-packages (from sphinx->-r requirements.txt (line 15)) (0.14) Requirement already satisfied: snowballstemmer>=1.1 in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-neal/envs/latest/lib/python3.7/site-packages (from sphinx->-r requirements.txt (line 15)) (2.0.0) Requirement already satisfied: Pygments>=2.0 in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-neal/envs/latest/lib/python3.7/site-packages (from sphinx->-r requirements.txt (line 15)) (2.3.1) Requirement already satisfied: imagesize in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-neal/envs/latest/lib/python3.7/site-packages (from sphinx->-r requirements.txt (line 15)) (1.2.0) Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-neal/envs/latest/lib/python3.7/site-packages (from sphinx->-r requirements.txt (line 15)) (41.0.1) Requirement already satisfied: Jinja2>=2.3 in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-neal/envs/latest/lib/python3.7/site-packages (from sphinx->-r requirements.txt (line 15)) (2.11.1) Requirement already satisfied: commonmark>=0.7.3 in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-neal/envs/latest/lib/python3.7/site-packages (from recommonmark->-r requirements.txt (line 17)) (0.8.1) Requirement already satisfied: urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-neal/envs/latest/lib/python3.7/site-packages (from requests>=2.7.9->codecov->-r requirements.txt (line 10)) (1.25.8) Requirement already satisfied: certifi>=2017.4.17 in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-neal/envs/latest/lib/python3.7/site-packages (from requests>=2.7.9->codecov->-r requirements.txt (line 10)) (2019.11.28) Requirement already satisfied: idna<3,>=2.5 in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-neal/envs/latest/lib/python3.7/site-packages (from requests>=2.7.9->codecov->-r requirements.txt (line 10)) (2.9) Requirement already satisfied: chardet<4,>=3.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-neal/envs/latest/lib/python3.7/site-packages (from requests>=2.7.9->codecov->-r requirements.txt (line 10)) (3.0.4) Requirement already satisfied: pyparsing>=2.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-neal/envs/latest/lib/python3.7/site-packages (from packaging->sphinx->-r requirements.txt (line 15)) (2.4.6) Requirement already satisfied: pytz>=2015.7 in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-neal/envs/latest/lib/python3.7/site-packages (from babel!=2.0,>=1.3->sphinx->-r requirements.txt (line 15)) (2019.3) Requirement already satisfied: MarkupSafe>=0.23 in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-neal/envs/latest/lib/python3.7/site-packages (from Jinja2>=2.3->sphinx->-r requirements.txt (line 15)) (1.1.1) Requirement already satisfied: future in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-neal/envs/latest/lib/python3.7/site-packages (from commonmark>=0.7.3->recommonmark->-r requirements.txt (line 17)) (0.18.2) Installing collected packages: cython, numpy, six, dimod, coverage, codecov Attempting uninstall: six Found existing installation: six 1.14.0 Uninstalling six-1.14.0: Successfully uninstalled six-1.14.0 Successfully installed codecov-2.0.22 coverage-5.0.4 cython-0.28.5 dimod-0.9.1 numpy-1.18.1 six-1.12.0 [rtd-command-info] start-time: 2020-03-25T19:12:52.158513Z, end-time: 2020-03-25T19:13:00.145434Z, duration: 7, exit-code: 0 python /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-neal/checkouts/latest/setup.py install --force Please put "# distutils: language=c++" in your .pyx or .pxd file(s) Compiling ./neal/simulated_annealing.pyx because it changed. [1/1] Cythonizing ./neal/simulated_annealing.pyx running install running bdist_egg running egg_info creating dwave_neal.egg-info writing dwave_neal.egg-info/PKG-INFO writing dependency_links to dwave_neal.egg-info/dependency_links.txt writing requirements to dwave_neal.egg-info/requires.txt writing top-level names to dwave_neal.egg-info/top_level.txt writing manifest file 'dwave_neal.egg-info/SOURCES.txt' reading manifest file 'dwave_neal.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'dwave_neal.egg-info/SOURCES.txt' installing library code to build/bdist.linux-x86_64/egg running install_lib running build_py creating build creating build/lib.linux-x86_64-3.7 creating build/lib.linux-x86_64-3.7/neal copying neal/sampler.py -> build/lib.linux-x86_64-3.7/neal copying neal/package_info.py -> build/lib.linux-x86_64-3.7/neal copying neal/__init__.py -> build/lib.linux-x86_64-3.7/neal running build_ext building 'neal.simulated_annealing' extension creating build/temp.linux-x86_64-3.7 creating build/temp.linux-x86_64-3.7/neal creating build/temp.linux-x86_64-3.7/neal/src gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I./neal/src/ -I/home/docs/.pyenv/versions/3.7.3/include/python3.7m -I/home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-neal/envs/latest/lib/python3.7/site-packages/numpy/core/include -c ./neal/simulated_annealing.cpp -o build/temp.linux-x86_64-3.7/./neal/simulated_annealing.o -std=c++11 In file included from /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-neal/envs/latest/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1832:0, from /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-neal/envs/latest/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-neal/envs/latest/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from ./neal/simulated_annealing.cpp:606: /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-neal/envs/latest/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I./neal/src/ -I/home/docs/.pyenv/versions/3.7.3/include/python3.7m -I/home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-neal/envs/latest/lib/python3.7/site-packages/numpy/core/include -c ./neal/src/cpu_sa.cpp -o build/temp.linux-x86_64-3.7/./neal/src/cpu_sa.o -std=c++11 g++ -pthread -shared -L/home/docs/.pyenv/versions/3.7.3/lib -L/home/docs/.pyenv/versions/3.7.3/lib build/temp.linux-x86_64-3.7/./neal/simulated_annealing.o build/temp.linux-x86_64-3.7/./neal/src/cpu_sa.o -o build/lib.linux-x86_64-3.7/neal/simulated_annealing.cpython-37m-x86_64-linux-gnu.so creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/egg creating build/bdist.linux-x86_64/egg/neal copying build/lib.linux-x86_64-3.7/neal/sampler.py -> build/bdist.linux-x86_64/egg/neal copying build/lib.linux-x86_64-3.7/neal/package_info.py -> build/bdist.linux-x86_64/egg/neal copying build/lib.linux-x86_64-3.7/neal/__init__.py -> build/bdist.linux-x86_64/egg/neal copying build/lib.linux-x86_64-3.7/neal/simulated_annealing.cpython-37m-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/egg/neal byte-compiling build/bdist.linux-x86_64/egg/neal/sampler.py to sampler.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/neal/package_info.py to package_info.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/neal/__init__.py to __init__.cpython-37.pyc creating stub loader for neal/simulated_annealing.cpython-37m-x86_64-linux-gnu.so byte-compiling build/bdist.linux-x86_64/egg/neal/simulated_annealing.py to simulated_annealing.cpython-37.pyc creating build/bdist.linux-x86_64/egg/EGG-INFO copying dwave_neal.egg-info/PKG-INFO -> build/bdist.linux-x86_64/egg/EGG-INFO copying dwave_neal.egg-info/SOURCES.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying dwave_neal.egg-info/dependency_links.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying dwave_neal.egg-info/not-zip-safe -> build/bdist.linux-x86_64/egg/EGG-INFO copying dwave_neal.egg-info/requires.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying dwave_neal.egg-info/top_level.txt -> build/bdist.linux-x86_64/egg/EGG-INFO writing build/bdist.linux-x86_64/egg/EGG-INFO/native_libs.txt creating dist creating 'dist/dwave_neal-0.5.3-py3.7-linux-x86_64.egg' and adding 'build/bdist.linux-x86_64/egg' to it removing 'build/bdist.linux-x86_64/egg' (and everything under it) Processing dwave_neal-0.5.3-py3.7-linux-x86_64.egg creating /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-neal/envs/latest/lib/python3.7/site-packages/dwave_neal-0.5.3-py3.7-linux-x86_64.egg Extracting dwave_neal-0.5.3-py3.7-linux-x86_64.egg to /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-neal/envs/latest/lib/python3.7/site-packages Adding dwave-neal 0.5.3 to easy-install.pth file Installed /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-neal/envs/latest/lib/python3.7/site-packages/dwave_neal-0.5.3-py3.7-linux-x86_64.egg Processing dependencies for dwave-neal==0.5.3 Searching for six==1.12.0 Best match: six 1.12.0 Adding six 1.12.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-neal/envs/latest/lib/python3.7/site-packages Searching for numpy==1.18.1 Best match: numpy 1.18.1 Adding numpy 1.18.1 to easy-install.pth file Installing f2py script to /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-neal/envs/latest/bin Installing f2py3 script to /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-neal/envs/latest/bin Installing f2py3.7 script to /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-neal/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-neal/envs/latest/lib/python3.7/site-packages Searching for dimod==0.9.1 Best match: dimod 0.9.1 Adding dimod 0.9.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-neal/envs/latest/lib/python3.7/site-packages Finished processing dependencies for dwave-neal==0.5.3 [rtd-command-info] start-time: 2020-03-25T19:13:01.798558Z, end-time: 2020-03-25T19:13:02.119913Z, duration: 0, exit-code: 0 cat docs/conf.py # -*- coding: utf-8 -*- # # dwave_neal documentation build configuration file, created by # sphinx-quickstart on Wed Jul 26 10:55:26 2017. # # This file is execfile()d with the current directory set to its # containing dir. # # Note that not all possible configuration values are present in this # autogenerated file. # # All configuration values have a default; values that are commented out # serve to show the default. # If extensions (or modules to document with autodoc) are in another directory, # add these directories to sys.path here. If the directory is relative to the # documentation root, use os.path.abspath to make it absolute, like shown here. # import os import sys # sys.path.insert(0, os.path.abspath('.')) # sys.path.insert(0, os.path.dirname(os.path.dirname(os.path.abspath(__file__)))) # -- General configuration ------------------------------------------------ # import sphinx # if sphinx.__version__ # can check here # Add any Sphinx extension module names here, as strings. They can be # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom # ones. extensions = [ 'sphinx.ext.autosummary', 'sphinx.ext.autodoc', 'sphinx.ext.coverage', 'sphinx.ext.doctest', 'sphinx.ext.intersphinx', 'sphinx.ext.mathjax', 'sphinx.ext.napoleon', 'sphinx.ext.todo', 'sphinx.ext.viewcode', 'sphinx.ext.ifconfig', ] autosummary_generate = True # templates_path = ['_templates'] # The suffix(es) of source filenames. # You can specify multiple suffix as a list of string: # source_suffix = ['.rst', '.md'] source_parsers = {'.md': 'recommonmark.parser.CommonMarkParser'} # The master toctree document. master_doc = 'index' # General information about the project. project = u'dwave-neal' copyright = u'2017, D-Wave Systems Inc' author = u'D-Wave Systems Inc' # The version info for the project you're documenting, acts as replacement for # |version| and |release|, also used in various other places throughout the # built documents. # from neal.package_info import __version__ release = version = __version__ # The language for content autogenerated by Sphinx. Refer to documentation # for a list of supported languages. # # This is also used if you do content translation via gettext catalogs. # Usually you set "language" from the command line for these cases. language = None add_module_names = False # List of patterns, relative to source directory, that match files and # directories to ignore when looking for source files. # This patterns also effect to html_static_path and html_extra_path exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store', 'sdk_index.rst'] # The name of the Pygments (syntax highlighting) style to use. pygments_style = 'sphinx' # If true, `todo` and `todoList` produce output, else they produce nothing. todo_include_todos = True modindex_common_prefix = ['neal.'] # -- Options for HTML output ---------------------------------------------- # The theme to use for HTML and HTML Help pages. See the documentation for # a list of builtin themes. # import sphinx_rtd_theme html_theme = 'sphinx_rtd_theme' html_theme_path = [sphinx_rtd_theme.get_html_theme_path()] # Theme options are theme-specific and customize the look and feel of a theme # further. For a list of options available for each theme, see the # documentation. # # html_theme_options = {} # Add any paths that contain custom static files (such as style sheets) here, # relative to this directory. They are copied after the builtin static files, # so a file named "default.css" will overwrite the builtin "default.css". html_static_path = ['_static'] def setup(app): app.add_stylesheet('cookie_notice.css') app.add_javascript('cookie_notice.js') app.add_config_value('target', 'repo', 'env') # -- Options for HTMLHelp output ------------------------------------------ # Output file base name for HTML help builder. htmlhelp_basename = 'dwave_neal_doc' # -- Options for LaTeX output --------------------------------------------- latex_elements = { # The paper size ('letterpaper' or 'a4paper'). # # 'papersize': 'letterpaper', # The font size ('10pt', '11pt' or '12pt'). # # 'pointsize': '10pt', # Additional stuff for the LaTeX preamble. # # 'preamble': '', # Latex figure (float) alignment # # 'figure_align': 'htbp', } # Grouping the document tree into LaTeX files. List of tuples # (source start file, target name, title, # author, documentclass [howto, manual, or own class]). latex_documents = [ (master_doc, 'dwave-neal.tex', u'dwave-neal Documentation', u'D-Wave Systems Inc', 'manual'), ] # -- Options for manual page output --------------------------------------- # One entry per manual page. List of tuples # (source start file, name, description, authors, manual section). man_pages = [ (master_doc, 'dwave-neal', u'dwave-neal Documentation', [author], 1) ] # -- Options for Texinfo output ------------------------------------------- # Grouping the document tree into Texinfo files. List of tuples # (source start file, target name, title, author, # dir menu entry, description, category) texinfo_documents = [ (master_doc, 'dwave-neal', u'dwave-neal Documentation', author, 'dwave-neal', 'One line description of project.', 'Miscellaneous'), ] # -- Options for Epub output ---------------------------------------------- # Bibliographic Dublin Core info. epub_title = project epub_author = author epub_publisher = author epub_copyright = copyright # The unique identifier of the text. This can be a ISBN number # or the project homepage. # # epub_identifier = '' # A unique identification for the text. # # epub_uid = '' # A list of files that should not be packed into the epub file. epub_exclude_files = ['search.html'] # Configuration for intersphinx: refer to the Python standard library. intersphinx_mapping = {'python': ('https://docs.python.org/3', None), 'qbsolv': ('https://docs.ocean.dwavesys.com/projects/qbsolv/en/latest/', None), 'oceandocs': ('https://docs.ocean.dwavesys.com/en/latest/', None), 'sysdocs_gettingstarted': ('https://docs.dwavesys.com/docs/latest/', None)} ########################################################################### # auto-created readthedocs.org specific configuration # ########################################################################### # # The following code was added during an automated build on readthedocs.org # It is auto created and injected for every build. The result is based on the # conf.py.tmpl file found in the readthedocs.org codebase: # https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl # import importlib import sys import os.path from six import string_types from sphinx import version_info # Get suffix for proper linking to GitHub # This is deprecated in Sphinx 1.3+, # as each page can have its own suffix if globals().get('source_suffix', False): if isinstance(source_suffix, string_types): SUFFIX = source_suffix elif isinstance(source_suffix, (list, tuple)): # Sphinx >= 1.3 supports list/tuple to define multiple suffixes SUFFIX = source_suffix[0] elif isinstance(source_suffix, dict): # Sphinx >= 1.8 supports a mapping dictionary for multiple suffixes SUFFIX = list(source_suffix.keys())[0] # make a ``list()`` for py2/py3 compatibility else: # default to .rst SUFFIX = '.rst' else: SUFFIX = '.rst' # Add RTD Static Path. Add to the end because it overwrites previous files. if not 'html_static_path' in globals(): html_static_path = [] if os.path.exists('_static'): html_static_path.append('_static') # Add RTD Theme only if they aren't overriding it already using_rtd_theme = ( ( 'html_theme' in globals() and html_theme in ['default'] and # Allow people to bail with a hack of having an html_style 'html_style' not in globals() ) or 'html_theme' not in globals() ) if using_rtd_theme: theme = importlib.import_module('sphinx_rtd_theme') html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} if 'html_theme_path' in globals(): html_theme_path.append(theme.get_html_theme_path()) else: html_theme_path = [theme.get_html_theme_path()] if globals().get('websupport2_base_url', False): websupport2_base_url = 'https://readthedocs.com/websupport' websupport2_static_url = 'https://assets.readthedocs.com/' #Add project information to the template context. context = { 'using_theme': using_rtd_theme, 'html_theme': html_theme, 'current_version': "latest", 'version_slug': "latest", 'MEDIA_URL': "https://media.readthedocs.com/media/", 'STATIC_URL': "https://assets.readthedocs.com/", 'PRODUCTION_DOMAIN': "readthedocs.com", 'versions': [ ("latest", "/en/latest/"), ("stable", "/en/stable/"), ], 'downloads': [ ("pdf", "//docs.ocean.dwavesys.com/_/downloads/neal/en/latest/pdf/"), ("html", "//docs.ocean.dwavesys.com/_/downloads/neal/en/latest/htmlzip/"), ("epub", "//docs.ocean.dwavesys.com/_/downloads/neal/en/latest/epub/"), ], 'subprojects': [ ], 'slug': 'd-wave-systems-dwave-neal', 'name': u'neal', 'rtd_language': u'en', 'programming_language': u'words', 'canonical_url': 'https://docs.ocean.dwavesys.com/projects/neal/en/latest/', 'analytics_code': '', 'single_version': False, 'conf_py_path': '/docs/', 'api_host': 'https://readthedocs.com', 'proxied_api_host': '/_', 'github_user': 'dwavesystems', 'github_repo': 'dwave-neal', 'github_version': 'master', 'display_github': True, 'bitbucket_user': 'None', 'bitbucket_repo': 'None', 'bitbucket_version': 'master', 'display_bitbucket': False, 'gitlab_user': 'None', 'gitlab_repo': 'None', 'gitlab_version': 'master', 'display_gitlab': False, 'READTHEDOCS': True, 'using_theme': (html_theme == "default"), 'new_theme': (html_theme == "sphinx_rtd_theme"), 'source_suffix': SUFFIX, 'ad_free': False, 'user_analytics_code': '', 'global_analytics_code': 'UA-17997319-2', 'commit': '115efb42', } if 'html_context' in globals(): html_context.update(context) else: html_context = context # Add custom RTD extension if 'extensions' in globals(): # Insert at the beginning because it can interfere # with other extensions. # See https://github.com/rtfd/readthedocs.org/pull/4054 extensions.insert(0, "readthedocs_ext.readthedocs") else: extensions = ["readthedocs_ext.readthedocs"] # Add External version warning banner to the external version documentation if 'branch' == 'external': extensions.insert(1, "readthedocs_ext.external_version_warning") project_language = 'en' # User's Sphinx configurations language_user = globals().get('language', None) latex_engine_user = globals().get('latex_engine', None) latex_elements_user = globals().get('latex_elements', None) # Remove this once xindy gets installed in Docker image and XINDYOPS # env variable is supported # https://github.com/rtfd/readthedocs-docker-images/pull/98 latex_use_xindy = False chinese = any([ language_user in ('zh_CN', 'zh_TW'), project_language in ('zh_CN', 'zh_TW'), ]) japanese = any([ language_user == 'ja', project_language == 'ja', ]) if chinese: latex_engine = latex_engine_user or 'xelatex' latex_elements_rtd = { 'preamble': '\\usepackage[UTF8]{ctex}\n', } latex_elements = latex_elements_user or latex_elements_rtd elif japanese: latex_engine = latex_engine_user or 'platex' [rtd-command-info] start-time: 2020-03-25T19:13:02.293307Z, end-time: 2020-03-25T19:13:05.098899Z, duration: 2, exit-code: 0 python sphinx-build -T -E -b readthedocs -d _build/doctrees-readthedocs -D language=en . _build/html Running Sphinx v1.8.5 loading translations [en]... done making output directory... [autosummary] generating autosummary for: README.rst, index.rst, installation.rst, intro.rst, license.rst, reference/index.rst, reference/sampler.rst [autosummary] generating autosummary for: /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-neal/checkouts/latest/docs/reference/generated/neal.sampler.SimulatedAnnealingSampler.parameters.rst, /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-neal/checkouts/latest/docs/reference/generated/neal.sampler.SimulatedAnnealingSampler.properties.rst, /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-neal/checkouts/latest/docs/reference/generated/neal.sampler.SimulatedAnnealingSampler.sample.rst, /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-neal/checkouts/latest/docs/reference/generated/neal.sampler.SimulatedAnnealingSampler.sample_ising.rst, /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-neal/checkouts/latest/docs/reference/generated/neal.sampler.SimulatedAnnealingSampler.sample_qubo.rst loading intersphinx inventory from https://docs.python.org/3/objects.inv... loading intersphinx inventory from https://docs.ocean.dwavesys.com/projects/qbsolv/en/latest/objects.inv... loading intersphinx inventory from https://docs.ocean.dwavesys.com/en/latest/objects.inv... loading intersphinx inventory from https://docs.dwavesys.com/docs/latest/objects.inv... building [mo]: targets for 0 po files that are out of date building [readthedocs]: targets for 7 source files that are out of date updating environment: 12 added, 0 changed, 0 removed reading sources... [ 8%] README reading sources... [ 16%] index reading sources... [ 25%] installation reading sources... [ 33%] intro reading sources... [ 41%] license reading sources... [ 50%] reference/generated/neal.sampler.SimulatedAnnealingSampler.parameters reading sources... [ 58%] reference/generated/neal.sampler.SimulatedAnnealingSampler.properties reading sources... [ 66%] reference/generated/neal.sampler.SimulatedAnnealingSampler.sample reading sources... [ 75%] reference/generated/neal.sampler.SimulatedAnnealingSampler.sample_ising reading sources... [ 83%] reference/generated/neal.sampler.SimulatedAnnealingSampler.sample_qubo reading sources... [ 91%] reference/index reading sources... [100%] reference/sampler looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 8%] README writing output... [ 16%] index writing output... [ 25%] installation writing output... [ 33%] intro writing output... [ 41%] license writing output... [ 50%] reference/generated/neal.sampler.SimulatedAnnealingSampler.parameters writing output... [ 58%] reference/generated/neal.sampler.SimulatedAnnealingSampler.properties writing output... [ 66%] reference/generated/neal.sampler.SimulatedAnnealingSampler.sample writing output... [ 75%] reference/generated/neal.sampler.SimulatedAnnealingSampler.sample_ising writing output... [ 83%] reference/generated/neal.sampler.SimulatedAnnealingSampler.sample_qubo writing output... [ 91%] reference/index writing output... [100%] reference/sampler generating indices... genindex py-modindex highlighting module code... [ 50%] dimod.core.sampler highlighting module code... [100%] neal.sampler writing additional pages... search copying static files... done copying readthedocs static files... done copying searchtools... done copying extra files... done dumping search index in English (code: en) ... done dumping object inventory... done build succeeded. The HTML pages are in _build/html. [rtd-command-info] start-time: 2020-03-25T19:13:05.290826Z, end-time: 2020-03-25T19:13:08.887335Z, duration: 3, exit-code: 0 python sphinx-build -T -b readthedocssinglehtmllocalmedia -d _build/doctrees-readthedocssinglehtmllocalmedia -D language=en . _build/localmedia Running Sphinx v1.8.5 loading translations [en]... done making output directory... [autosummary] generating autosummary for: README.rst, index.rst, installation.rst, intro.rst, license.rst, reference/generated/neal.sampler.SimulatedAnnealingSampler.parameters.rst, reference/generated/neal.sampler.SimulatedAnnealingSampler.properties.rst, reference/generated/neal.sampler.SimulatedAnnealingSampler.sample.rst, reference/generated/neal.sampler.SimulatedAnnealingSampler.sample_ising.rst, reference/generated/neal.sampler.SimulatedAnnealingSampler.sample_qubo.rst, reference/index.rst, reference/sampler.rst loading intersphinx inventory from https://docs.python.org/3/objects.inv... loading intersphinx inventory from https://docs.ocean.dwavesys.com/projects/qbsolv/en/latest/objects.inv... loading intersphinx inventory from https://docs.ocean.dwavesys.com/en/latest/objects.inv... loading intersphinx inventory from https://docs.dwavesys.com/docs/latest/objects.inv... building [mo]: targets for 0 po files that are out of date building [readthedocssinglehtmllocalmedia]: all documents updating environment: 12 added, 0 changed, 0 removed reading sources... [ 8%] README reading sources... [ 16%] index reading sources... [ 25%] installation reading sources... [ 33%] intro reading sources... [ 41%] license reading sources... [ 50%] reference/generated/neal.sampler.SimulatedAnnealingSampler.parameters reading sources... [ 58%] reference/generated/neal.sampler.SimulatedAnnealingSampler.properties reading sources... [ 66%] reference/generated/neal.sampler.SimulatedAnnealingSampler.sample reading sources... [ 75%] reference/generated/neal.sampler.SimulatedAnnealingSampler.sample_ising reading sources... [ 83%] reference/generated/neal.sampler.SimulatedAnnealingSampler.sample_qubo reading sources... [ 91%] reference/index reading sources... [100%] reference/sampler looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done assembling single document... intro reference/index reference/sampler reference/generated/neal.sampler.SimulatedAnnealingSampler.properties reference/generated/neal.sampler.SimulatedAnnealingSampler.parameters reference/generated/neal.sampler.SimulatedAnnealingSampler.sample reference/generated/neal.sampler.SimulatedAnnealingSampler.sample_ising reference/generated/neal.sampler.SimulatedAnnealingSampler.sample_qubo installation license writing... done writing additional files... copying static files... done copying readthedocs static files... done copying extra files... done dumping object inventory... done build succeeded. The HTML page is in _build/localmedia. [rtd-command-info] start-time: 2020-03-25T19:13:09.108737Z, end-time: 2020-03-25T19:13:11.352268Z, duration: 2, exit-code: 0 python sphinx-build -b latex -D language=en -d _build/doctrees . _build/latex Running Sphinx v1.8.5 loading translations [en]... done making output directory... [autosummary] generating autosummary for: README.rst, index.rst, installation.rst, intro.rst, license.rst, reference/generated/neal.sampler.SimulatedAnnealingSampler.parameters.rst, reference/generated/neal.sampler.SimulatedAnnealingSampler.properties.rst, reference/generated/neal.sampler.SimulatedAnnealingSampler.sample.rst, reference/generated/neal.sampler.SimulatedAnnealingSampler.sample_ising.rst, reference/generated/neal.sampler.SimulatedAnnealingSampler.sample_qubo.rst, reference/index.rst, reference/sampler.rst loading intersphinx inventory from https://docs.python.org/3/objects.inv... loading intersphinx inventory from https://docs.ocean.dwavesys.com/projects/qbsolv/en/latest/objects.inv... loading intersphinx inventory from https://docs.ocean.dwavesys.com/en/latest/objects.inv... loading intersphinx inventory from https://docs.dwavesys.com/docs/latest/objects.inv... building [mo]: targets for 0 po files that are out of date building [latex]: all documents updating environment: 12 added, 0 changed, 0 removed reading sources... [ 8%] README reading sources... [ 16%] index reading sources... [ 25%] installation reading sources... [ 33%] intro reading sources... [ 41%] license reading sources... [ 50%] reference/generated/neal.sampler.SimulatedAnnealingSampler.parameters reading sources... [ 58%] reference/generated/neal.sampler.SimulatedAnnealingSampler.properties reading sources... [ 66%] reference/generated/neal.sampler.SimulatedAnnealingSampler.sample reading sources... [ 75%] reference/generated/neal.sampler.SimulatedAnnealingSampler.sample_ising reading sources... [ 83%] reference/generated/neal.sampler.SimulatedAnnealingSampler.sample_qubo reading sources... [ 91%] reference/index reading sources... [100%] reference/sampler looking for now-outdated files... none found pickling environment... done checking consistency... done processing dwave-neal.tex...index intro reference/index reference/sampler reference/generated/neal.sampler.SimulatedAnnealingSampler.properties reference/generated/neal.sampler.SimulatedAnnealingSampler.parameters reference/generated/neal.sampler.SimulatedAnnealingSampler.sample reference/generated/neal.sampler.SimulatedAnnealingSampler.sample_ising reference/generated/neal.sampler.SimulatedAnnealingSampler.sample_qubo installation license resolving references... writing... done copying TeX support files... done build succeeded. The LaTeX files are in _build/latex. Run 'make' in that directory to run these through (pdf)latex (use `make latexpdf' here to do that automatically). [rtd-command-info] start-time: 2020-03-25T19:13:11.897892Z, end-time: 2020-03-25T19:13:12.214161Z, duration: 0, exit-code: 0 cat latexmkrc $latex = 'latex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $pdflatex = 'pdflatex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $lualatex = 'lualatex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $xelatex = 'xelatex --no-pdf ' . $ENV{'LATEXOPTS'} . ' %O %S'; $makeindex = 'makeindex -s python.ist %O -o %D %S'; add_cus_dep( "glo", "gls", 0, "makeglo" ); sub makeglo { return system( "makeindex -s gglo.ist -o '$_[0].gls' '$_[0].glo'" ); } [rtd-command-info] start-time: 2020-03-25T19:13:12.388043Z, end-time: 2020-03-25T19:13:14.650290Z, duration: 2, exit-code: 0 latexmk -r latexmkrc -pdf -f -dvi- -ps- -jobname=d-wave-systems-dwave-neal -interaction=nonstopmode Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 1, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 2, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 3, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 4, chunk 1. Subroutine makeglo redefined at (eval 11) line 7, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 1, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 2, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 3, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 4, chunk 1. Latexmk: This is Latexmk, John Collins, 1 January 2015, version: 4.41. File::Glob::glob() will disappear in perl 5.30. Use File::Glob::bsd_glob() instead. at /usr/bin/latexmk line 7482. Rule 'pdflatex': Rules & subrules not known to be previously run: pdflatex Rule 'pdflatex': The following rules & subrules became out-of-date: 'pdflatex' ------------ Run number 1 of rule 'pdflatex' ------------ ------------ Running 'pdflatex -interaction=nonstopmode -recorder --jobname="d-wave-systems-dwave-neal" "dwave-neal.tex"' ------------ Latexmk: applying rule 'pdflatex'... This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./dwave-neal.tex LaTeX2e <2017-04-15> Babel <3.18> and hyphenation patterns for 84 language(s) loaded. (./sphinxmanual.cls Document Class: sphinxmanual 2018/12/22 v1.8.3 Document class (Sphinx manual) (/usr/share/texlive/texmf-dist/tex/latex/base/report.cls Document Class: report 2014/09/29 v1.4h Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo))) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/ot1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/omsenc.dfu))) (/usr/share/texlive/texmf-dist/tex/latex/cmap/cmap.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def)<>) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty For additional information on amsmath, use the `?' option. (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty)) (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty (/usr/share/texlive/texmf-dist/tex/generic/babel/switch.def) (/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.def (/usr/share/texlive/texmf-dist/tex/generic/babel/txtbabel.def)))) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) (/usr/share/texlive/texmf-dist/tex/latex/fncychap/fncychap.sty) (./sphinx.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty 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(/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) [3] [4] Chapter 2. [5] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pcr.fd) LaTeX Warning: Hyper reference `reference/generated/neal.sampler.SimulatedAnnea lingSampler.properties:neal.sampler.SimulatedAnnealingSampler.properties' on pa ge 6 undefined on input line 199. LaTeX Warning: Hyper reference `reference/generated/neal.sampler.SimulatedAnnea lingSampler.parameters:neal.sampler.SimulatedAnnealingSampler.parameters' on pa ge 6 undefined on input line 204. LaTeX Warning: Hyper reference `reference/generated/neal.sampler.SimulatedAnnea lingSampler.properties:neal.sampler.SimulatedAnnealingSampler.properties' on pa ge 6 undefined on input line 206. Package longtable Warning: Column widths have changed (longtable) in table 1 on input line 209. 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LaTeX Warning: Hyper reference `reference/sampler:neal.sampler.SimulatedAnneali ngSampler' on page 10 undefined on input line 546. [10] [11] [12] [13] [14] Chapter 3. [15] [16] LaTeX Warning: Reference `reference/sampler:module-neal.sampler' on page 17 und efined on input line 832. [17] No file d-wave-systems-dwave-neal.ind. Package longtable Warning: Table widths have changed. Rerun LaTeX. (./d-wave-systems-dwave-neal.aux) Package rerunfilecheck Warning: File `d-wave-systems-dwave-neal.out' has change d. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on d-wave-systems-dwave-neal.pdf (21 pages, 153489 bytes). Transcript written on d-wave-systems-dwave-neal.log. Latexmk: Index file 'd-wave-systems-dwave-neal.idx' was written Latexmk: Missing input file: 'd-wave-systems-dwave-neal.ind' from line 'No file d-wave-systems-dwave-neal.ind.' Latexmk: References changed. Latexmk: References changed. Latexmk: Log file says output to 'd-wave-systems-dwave-neal.pdf' Latexmk: List of undefined refs and citations: Reference `reference/sampler:module-neal.sampler' on page 17 undefined on input line 832 Latexmk: Summary of warnings: Latex failed to resolve 1 reference(s) Rule 'makeindex d-wave-systems-dwave-neal.idx': File changes, etc: Non-existent destination files: 'd-wave-systems-dwave-neal.ind' ------------ Run number 1 of rule 'makeindex d-wave-systems-dwave-neal.idx' ------------ ------------ Running 'makeindex -s python.ist -o "d-wave-systems-dwave-neal.ind" "d-wave-systems-dwave-neal.idx"' ------------ Latexmk: applying rule 'makeindex d-wave-systems-dwave-neal.idx'... This is makeindex, version 2.15 [TeX Live 2017] (kpathsea + Thai support). Scanning style file ./python.ist.......done (7 attributes redefined, 0 ignored). Scanning input file d-wave-systems-dwave-neal.idx....done (8 entries accepted, 0 rejected). Sorting entries....done (32 comparisons). Generating output file d-wave-systems-dwave-neal.ind....done (23 lines written, 0 warnings). Output written in d-wave-systems-dwave-neal.ind. Transcript written in d-wave-systems-dwave-neal.ilg. Rule 'pdflatex': File changes, etc: Changed files, or newly in use since previous run(s): 'd-wave-systems-dwave-neal.aux' 'd-wave-systems-dwave-neal.ind' ------------ Run number 2 of rule 'pdflatex' ------------ ------------ Running 'pdflatex -interaction=nonstopmode -recorder --jobname="d-wave-systems-dwave-neal" "dwave-neal.tex"' ------------ Latexmk: applying rule 'pdflatex'... 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[15] [16] [17] (./d-wave-systems-dwave-neal.ind [18] Underfull \hbox (badness 10000) in paragraph at lines 19--20 []\T1/pcr/m/n/10 sample_ising() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 Sim-u-latedAn-n eal-ingSam-pler Underfull \hbox (badness 10000) in paragraph at lines 20--21 []\T1/pcr/m/n/10 sample_qubo() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 Sim-u-latedAn-ne al-ingSam-pler Underfull \hbox (badness 10000) in paragraph at lines 21--22 []\T1/pcr/m/n/10 SimulatedAnnealingSampler \T1/ptm/m/n/10 (\T1/ptm/m/it/10 clas s in [19]) (./d-wave-systems-dwave-neal.aux) Package rerunfilecheck Warning: File `d-wave-systems-dwave-neal.out' has change d. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on d-wave-systems-dwave-neal.pdf (23 pages, 158315 bytes). Transcript written on d-wave-systems-dwave-neal.log. Latexmk: Index file 'd-wave-systems-dwave-neal.idx' was written Latexmk: References changed. Latexmk: Log file says output to 'd-wave-systems-dwave-neal.pdf' Rule 'pdflatex': File changes, etc: Changed files, or newly in use since previous run(s): 'd-wave-systems-dwave-neal.aux' 'd-wave-systems-dwave-neal.out' 'd-wave-systems-dwave-neal.toc' ------------ Run number 3 of rule 'pdflatex' ------------ ------------ Running 'pdflatex -interaction=nonstopmode -recorder --jobname="d-wave-systems-dwave-neal" "dwave-neal.tex"' ------------ Latexmk: applying rule 'pdflatex'... This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./dwave-neal.tex LaTeX2e <2017-04-15> Babel <3.18> and hyphenation patterns for 84 language(s) loaded. 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(/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) [3] [4] Chapter 2. [5] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pcr.fd) [6] Underfull \hbox (badness 10000) in paragraph at lines 300--301 []|[][]\T1/pcr/m/sl/10 SimulatedAnnealingSampler.sample[][]\T1/ptm/m/n/10 (bqm[ , Underfull \hbox (badness 10000) in paragraph at lines 305--306 []|[][]\T1/pcr/m/sl/10 SimulatedAnnealingSampler. Underfull \hbox (badness 10000) in paragraph at lines 310--311 []|[][]\T1/pcr/m/sl/10 SimulatedAnnealingSampler. 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[15] [16] [17] (./d-wave-systems-dwave-neal.ind [18] Underfull \hbox (badness 10000) in paragraph at lines 19--20 []\T1/pcr/m/n/10 sample_ising() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 Sim-u-latedAn-n eal-ingSam-pler Underfull \hbox (badness 10000) in paragraph at lines 20--21 []\T1/pcr/m/n/10 sample_qubo() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 Sim-u-latedAn-ne al-ingSam-pler Underfull \hbox (badness 10000) in paragraph at lines 21--22 []\T1/pcr/m/n/10 SimulatedAnnealingSampler \T1/ptm/m/n/10 (\T1/ptm/m/it/10 clas s in [19]) (./d-wave-systems-dwave-neal.aux) ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on d-wave-systems-dwave-neal.pdf (23 pages, 158693 bytes). Transcript written on d-wave-systems-dwave-neal.log. Latexmk: Index file 'd-wave-systems-dwave-neal.idx' was written Latexmk: Log file says output to 'd-wave-systems-dwave-neal.pdf' Latexmk: All targets (d-wave-systems-dwave-neal.pdf) are up-to-date [rtd-command-info] start-time: 2020-03-25T19:13:14.814821Z, end-time: 2020-03-25T19:13:15.128332Z, duration: 0, exit-code: 0 mv -f /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-neal/checkouts/latest/docs/_build/latex/d-wave-systems-dwave-neal.pdf /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dwave-neal/artifacts/latest/sphinx_pdf/d-wave-systems-dwave-neal.pdf [rtd-command-info] start-time: 2020-03-25T19:13:15.285386Z, end-time: 2020-03-25T19:13:18.784801Z, duration: 3, exit-code: 0 python sphinx-build -T -b epub -d _build/doctrees-epub -D language=en . _build/epub Running Sphinx v1.8.5 loading translations [en]... done making output directory... 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