Read the Docs build information
Build id: 301300
Project: cyverse-cc-2020
Version: latest
Commit: 9a36c2333b15f8809bae465b8a9d16caecd92c07
Date: 2020-03-12T16:03:01.280497Z
State: finished
Success: True


[rtd-command-info] start-time: 2020-03-12T16:03:04.285629Z, end-time: 2020-03-12T16:03:04.546031Z, duration: 0, exit-code: 0
git remote set-url origin https://github.com/CyVerse-learning-materials/container_camp_workshop_2020.git


[rtd-command-info] start-time: 2020-03-12T16:03:04.718736Z, end-time: 2020-03-12T16:03:06.420694Z, duration: 1, exit-code: 0
git fetch origin --force --tags --prune --prune-tags --depth 50
From https://github.com/CyVerse-learning-materials/container_camp_workshop_2020
   4478a94..9a36c23  master     -> origin/master

[rtd-command-info] start-time: 2020-03-12T16:03:06.818350Z, end-time: 2020-03-12T16:03:07.504523Z, duration: 0, exit-code: 0
git checkout --force origin/master
Previous HEAD position was 4478a94 Update dockeradvanced.rst
HEAD is now at 9a36c23 fix agenda link

[rtd-command-info] start-time: 2020-03-12T16:03:07.664906Z, end-time: 2020-03-12T16:03:07.944351Z, duration: 0, exit-code: 0
git clean -d -f -f
Removing misc/__pycache__/__init__.cpython-37.pyc
Removing misc/__pycache__/cyverse_sphinx_conf.cpython-37.pyc

[rtd-command-info] start-time: 2020-03-12T16:03:09.644421Z, end-time: 2020-03-12T16:03:15.079455Z, duration: 5, exit-code: 0
python3.7 -mvirtualenv  
Using base prefix '/home/docs/.pyenv/versions/3.7.3'
New python executable in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cc-2020/envs/latest/bin/python3.7
Not overwriting existing python script /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cc-2020/envs/latest/bin/python (you must use /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cc-2020/envs/latest/bin/python3.7)
Installing setuptools, pip, wheel...
done.

[rtd-command-info] start-time: 2020-03-12T16:03:15.236004Z, end-time: 2020-03-12T16:03:16.201674Z, duration: 0, exit-code: 0
python -m pip install --upgrade --cache-dir /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cc-2020/.cache/pip pip
Requirement already up-to-date: pip in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cc-2020/envs/latest/lib/python3.7/site-packages (20.0.2)

[rtd-command-info] start-time: 2020-03-12T16:03:16.368966Z, end-time: 2020-03-12T16:03:19.241426Z, duration: 2, exit-code: 0
python -m pip install --upgrade --cache-dir /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cc-2020/.cache/pip Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1
Requirement already up-to-date: Pygments==2.3.1 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cc-2020/envs/latest/lib/python3.7/site-packages (2.3.1)
Collecting setuptools==41.0.1
  Using cached setuptools-41.0.1-py2.py3-none-any.whl (575 kB)
Requirement already up-to-date: docutils==0.14 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cc-2020/envs/latest/lib/python3.7/site-packages (0.14)
Requirement already up-to-date: mock==1.0.1 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cc-2020/envs/latest/lib/python3.7/site-packages (1.0.1)
Requirement already up-to-date: pillow==5.4.1 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cc-2020/envs/latest/lib/python3.7/site-packages (5.4.1)
Requirement already up-to-date: alabaster!=0.7.5,<0.8,>=0.7 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cc-2020/envs/latest/lib/python3.7/site-packages (0.7.12)
Requirement already up-to-date: commonmark==0.8.1 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cc-2020/envs/latest/lib/python3.7/site-packages (0.8.1)
Requirement already up-to-date: recommonmark==0.5.0 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cc-2020/envs/latest/lib/python3.7/site-packages (0.5.0)
Requirement already up-to-date: sphinx<2 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cc-2020/envs/latest/lib/python3.7/site-packages (1.8.5)
Requirement already up-to-date: sphinx-rtd-theme<0.5 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cc-2020/envs/latest/lib/python3.7/site-packages (0.4.3)
Requirement already up-to-date: readthedocs-sphinx-ext<1.1 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cc-2020/envs/latest/lib/python3.7/site-packages (1.0.1)
Requirement already satisfied, skipping upgrade: future in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cc-2020/envs/latest/lib/python3.7/site-packages (from commonmark==0.8.1) (0.18.2)
Requirement already satisfied, skipping upgrade: imagesize in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cc-2020/envs/latest/lib/python3.7/site-packages (from sphinx<2) (1.2.0)
Requirement already satisfied, skipping upgrade: Jinja2>=2.3 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cc-2020/envs/latest/lib/python3.7/site-packages (from sphinx<2) (2.11.1)
Requirement already satisfied, skipping upgrade: snowballstemmer>=1.1 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cc-2020/envs/latest/lib/python3.7/site-packages (from sphinx<2) (2.0.0)
Requirement already satisfied, skipping upgrade: packaging in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cc-2020/envs/latest/lib/python3.7/site-packages (from sphinx<2) (20.3)
Requirement already satisfied, skipping upgrade: sphinxcontrib-websupport in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cc-2020/envs/latest/lib/python3.7/site-packages (from sphinx<2) (1.2.0)
Requirement already satisfied, skipping upgrade: six>=1.5 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cc-2020/envs/latest/lib/python3.7/site-packages (from sphinx<2) (1.14.0)
Requirement already satisfied, skipping upgrade: babel!=2.0,>=1.3 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cc-2020/envs/latest/lib/python3.7/site-packages (from sphinx<2) (2.8.0)
Requirement already satisfied, skipping upgrade: requests>=2.0.0 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cc-2020/envs/latest/lib/python3.7/site-packages (from sphinx<2) (2.23.0)
Requirement already satisfied, skipping upgrade: MarkupSafe>=0.23 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cc-2020/envs/latest/lib/python3.7/site-packages (from Jinja2>=2.3->sphinx<2) (1.1.1)
Requirement already satisfied, skipping upgrade: pyparsing>=2.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cc-2020/envs/latest/lib/python3.7/site-packages (from packaging->sphinx<2) (2.4.6)
Requirement already satisfied, skipping upgrade: pytz>=2015.7 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cc-2020/envs/latest/lib/python3.7/site-packages (from babel!=2.0,>=1.3->sphinx<2) (2019.3)
Requirement already satisfied, skipping upgrade: certifi>=2017.4.17 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cc-2020/envs/latest/lib/python3.7/site-packages (from requests>=2.0.0->sphinx<2) (2019.11.28)
Requirement already satisfied, skipping upgrade: idna<3,>=2.5 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cc-2020/envs/latest/lib/python3.7/site-packages (from requests>=2.0.0->sphinx<2) (2.9)
Requirement already satisfied, skipping upgrade: chardet<4,>=3.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cc-2020/envs/latest/lib/python3.7/site-packages (from requests>=2.0.0->sphinx<2) (3.0.4)
Requirement already satisfied, skipping upgrade: urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cc-2020/envs/latest/lib/python3.7/site-packages (from requests>=2.0.0->sphinx<2) (1.25.8)
Installing collected packages: setuptools
  Attempting uninstall: setuptools
    Found existing installation: setuptools 46.0.0
    Uninstalling setuptools-46.0.0:
      Successfully uninstalled setuptools-46.0.0
Successfully installed setuptools-41.0.1

[rtd-command-info] start-time: 2020-03-12T16:03:19.429163Z, end-time: 2020-03-12T16:03:20.285457Z, duration: 0, exit-code: 0
python -m pip install --exists-action=w --cache-dir /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cc-2020/.cache/pip -r requirements.txt
Requirement already satisfied: sphinx in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cc-2020/envs/latest/lib/python3.7/site-packages (from -r requirements.txt (line 1)) (1.8.5)
Requirement already satisfied: recommonmark in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cc-2020/envs/latest/lib/python3.7/site-packages (from -r requirements.txt (line 2)) (0.5.0)
Requirement already satisfied: sphinxcontrib-images in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cc-2020/envs/latest/lib/python3.7/site-packages (from -r requirements.txt (line 3)) (0.9.1)
Requirement already satisfied: sphinx_bootstrap_theme in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cc-2020/envs/latest/lib/python3.7/site-packages (from -r requirements.txt (line 4)) (0.7.1)
Requirement already satisfied: guzzle_sphinx_theme==0.7.11 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cc-2020/envs/latest/lib/python3.7/site-packages (from -r requirements.txt (line 5)) (0.7.11)
Requirement already satisfied: docutils>=0.11 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cc-2020/envs/latest/lib/python3.7/site-packages (from sphinx->-r requirements.txt (line 1)) (0.14)
Requirement already satisfied: packaging in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cc-2020/envs/latest/lib/python3.7/site-packages (from sphinx->-r requirements.txt (line 1)) (20.3)
Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cc-2020/envs/latest/lib/python3.7/site-packages (from sphinx->-r requirements.txt (line 1)) (41.0.1)
Requirement already satisfied: sphinxcontrib-websupport in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cc-2020/envs/latest/lib/python3.7/site-packages (from sphinx->-r requirements.txt (line 1)) (1.2.0)
Requirement already satisfied: Pygments>=2.0 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cc-2020/envs/latest/lib/python3.7/site-packages (from sphinx->-r requirements.txt (line 1)) (2.3.1)
Requirement already satisfied: snowballstemmer>=1.1 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cc-2020/envs/latest/lib/python3.7/site-packages (from sphinx->-r requirements.txt (line 1)) (2.0.0)
Requirement already satisfied: alabaster<0.8,>=0.7 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cc-2020/envs/latest/lib/python3.7/site-packages (from sphinx->-r requirements.txt (line 1)) (0.7.12)
Requirement already satisfied: imagesize in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cc-2020/envs/latest/lib/python3.7/site-packages (from sphinx->-r requirements.txt (line 1)) (1.2.0)
Requirement already satisfied: requests>=2.0.0 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cc-2020/envs/latest/lib/python3.7/site-packages (from sphinx->-r requirements.txt (line 1)) (2.23.0)
Requirement already satisfied: Jinja2>=2.3 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cc-2020/envs/latest/lib/python3.7/site-packages (from sphinx->-r requirements.txt (line 1)) (2.11.1)
Requirement already satisfied: six>=1.5 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cc-2020/envs/latest/lib/python3.7/site-packages (from sphinx->-r requirements.txt (line 1)) (1.14.0)
Requirement already satisfied: babel!=2.0,>=1.3 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cc-2020/envs/latest/lib/python3.7/site-packages (from sphinx->-r requirements.txt (line 1)) (2.8.0)
Requirement already satisfied: commonmark>=0.7.3 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cc-2020/envs/latest/lib/python3.7/site-packages (from recommonmark->-r requirements.txt (line 2)) (0.8.1)
Requirement already satisfied: pyparsing>=2.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cc-2020/envs/latest/lib/python3.7/site-packages (from packaging->sphinx->-r requirements.txt (line 1)) (2.4.6)
Requirement already satisfied: certifi>=2017.4.17 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cc-2020/envs/latest/lib/python3.7/site-packages (from requests>=2.0.0->sphinx->-r requirements.txt (line 1)) (2019.11.28)
Requirement already satisfied: urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cc-2020/envs/latest/lib/python3.7/site-packages (from requests>=2.0.0->sphinx->-r requirements.txt (line 1)) (1.25.8)
Requirement already satisfied: idna<3,>=2.5 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cc-2020/envs/latest/lib/python3.7/site-packages (from requests>=2.0.0->sphinx->-r requirements.txt (line 1)) (2.9)
Requirement already satisfied: chardet<4,>=3.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cc-2020/envs/latest/lib/python3.7/site-packages (from requests>=2.0.0->sphinx->-r requirements.txt (line 1)) (3.0.4)
Requirement already satisfied: MarkupSafe>=0.23 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cc-2020/envs/latest/lib/python3.7/site-packages (from Jinja2>=2.3->sphinx->-r requirements.txt (line 1)) (1.1.1)
Requirement already satisfied: pytz>=2015.7 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cc-2020/envs/latest/lib/python3.7/site-packages (from babel!=2.0,>=1.3->sphinx->-r requirements.txt (line 1)) (2019.3)
Requirement already satisfied: future in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cc-2020/envs/latest/lib/python3.7/site-packages (from commonmark>=0.7.3->recommonmark->-r requirements.txt (line 2)) (0.18.2)

[rtd-command-info] start-time: 2020-03-12T16:03:22.047925Z, end-time: 2020-03-12T16:03:22.284614Z, duration: 0, exit-code: 0
cat conf.py
#!/usr/bin/env python3
# -*- coding: utf-8 -*-
#
# General information about the project.

import sys
import os
sys.path.insert(0, os.path.dirname(__file__))

from misc.cyverse_sphinx_conf import *  # noqa

project = 'CyVerse Learning Institute - Container Camp 2020'
copyright = '2020, CyVerse'
author = 'CyVerse'
version = '0.3.0'
release = '0.3.0'

epub_title = 'CyVerse Learning Institute - Container Camp 2020'
epub_author = 'Amanda Cooksey, Upendra Devisetty, Sateesh Peri, Julian Pistorius, Tyson L. Swetnam, Reetu Tujeeta, Jason Williams'
epub_publisher = 'CyVerse'
epub_copyright = 'CC0 - Open Source'




###########################################################################
#          auto-created readthedocs.org specific configuration            #
###########################################################################


#
# The following code was added during an automated build on readthedocs.org
# It is auto created and injected for every build. The result is based on the
# conf.py.tmpl file found in the readthedocs.org codebase:
# https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl
#


import importlib
import sys
import os.path
from six import string_types

from sphinx import version_info

# Get suffix for proper linking to GitHub
# This is deprecated in Sphinx 1.3+,
# as each page can have its own suffix
if globals().get('source_suffix', False):
    if isinstance(source_suffix, string_types):
        SUFFIX = source_suffix
    elif isinstance(source_suffix, (list, tuple)):
        # Sphinx >= 1.3 supports list/tuple to define multiple suffixes
        SUFFIX = source_suffix[0]
    elif isinstance(source_suffix, dict):
        # Sphinx >= 1.8 supports a mapping dictionary for multiple suffixes
        SUFFIX = list(source_suffix.keys())[0]  # make a ``list()`` for py2/py3 compatibility
    else:
        # default to .rst
        SUFFIX = '.rst'
else:
    SUFFIX = '.rst'

# Add RTD Static Path. Add to the end because it overwrites previous files.
if not 'html_static_path' in globals():
    html_static_path = []
if os.path.exists('_static'):
    html_static_path.append('_static')

# Add RTD Theme only if they aren't overriding it already
using_rtd_theme = (
    (
        'html_theme' in globals() and
        html_theme in ['default'] and
        # Allow people to bail with a hack of having an html_style
        'html_style' not in globals()
    ) or 'html_theme' not in globals()
)
if using_rtd_theme:
    theme = importlib.import_module('sphinx_rtd_theme')
    html_theme = 'sphinx_rtd_theme'
    html_style = None
    html_theme_options = {}
    if 'html_theme_path' in globals():
        html_theme_path.append(theme.get_html_theme_path())
    else:
        html_theme_path = [theme.get_html_theme_path()]

if globals().get('websupport2_base_url', False):
    websupport2_base_url = 'https://readthedocs.com/websupport'
    websupport2_static_url = 'https://media.readthedocs.com/'


#Add project information to the template context.
context = {
    'using_theme': using_rtd_theme,
    'html_theme': html_theme,
    'current_version': "latest",
    'version_slug': "latest",
    'MEDIA_URL': "https://media.readthedocs.com/media/",
    'STATIC_URL': "https://media.readthedocs.com/",
    'PRODUCTION_DOMAIN': "readthedocs.com",
    'versions': [
    ("latest", "/en/latest/"),
    ],
    'downloads': [ 
    ("pdf", "//learning.cyverse.org/_/downloads/Container-camp-2020/en/latest/pdf/"),
    ("html", "//learning.cyverse.org/_/downloads/Container-camp-2020/en/latest/htmlzip/"),
    ("epub", "//learning.cyverse.org/_/downloads/Container-camp-2020/en/latest/epub/"),
    ],
    'subprojects': [ 
    ],
    'slug': 'cyverse-cc-2020',
    'name': u'cc-2020',
    'rtd_language': u'en',
    'programming_language': u'words',
    'canonical_url': 'https://learning.cyverse.org/projects/Container-camp-2020/en/latest/',
    'analytics_code': 'None',
    'single_version': False,
    'conf_py_path': '/',
    'api_host': 'https://readthedocs.com',
    'proxied_api_host': '/_',
    'github_user': 'CyVerse-learning-materials',
    'github_repo': 'container_camp_workshop_2020',
    'github_version': 'master',
    'display_github': True,
    'bitbucket_user': 'None',
    'bitbucket_repo': 'None',
    'bitbucket_version': 'master',
    'display_bitbucket': False,
    'gitlab_user': 'None',
    'gitlab_repo': 'None',
    'gitlab_version': 'master',
    'display_gitlab': False,
    'READTHEDOCS': True,
    'using_theme': (html_theme == "default"),
    'new_theme': (html_theme == "sphinx_rtd_theme"),
    'source_suffix': SUFFIX,
    'ad_free': False,
    'user_analytics_code': '',
    'global_analytics_code': 'UA-17997319-2',
    'commit': '9a36c233',
}




if 'html_context' in globals():
    
    html_context.update(context)
    
else:
    html_context = context

# Add custom RTD extension
if 'extensions' in globals():
    # Insert at the beginning because it can interfere
    # with other extensions.
    # See https://github.com/rtfd/readthedocs.org/pull/4054
    extensions.insert(0, "readthedocs_ext.readthedocs")
else:
    extensions = ["readthedocs_ext.readthedocs"]

# Add External version warning banner to the external version documentation
if 'branch' == 'external':
    extensions.insert(1, "readthedocs_ext.external_version_warning")

project_language = 'en'

# User's Sphinx configurations
language_user = globals().get('language', None)
latex_engine_user = globals().get('latex_engine', None)
latex_elements_user = globals().get('latex_elements', None)

# Remove this once xindy gets installed in Docker image and XINDYOPS
# env variable is supported
# https://github.com/rtfd/readthedocs-docker-images/pull/98
latex_use_xindy = False

chinese = any([
    language_user in ('zh_CN', 'zh_TW'),
    project_language in ('zh_CN', 'zh_TW'),
])

japanese = any([
    language_user == 'ja',
    project_language == 'ja',
])

if chinese:
    latex_engine = latex_engine_user or 'xelatex'

    latex_elements_rtd = {
        'preamble': '\\usepackage[UTF8]{ctex}\n',
    }
    latex_elements = latex_elements_user or latex_elements_rtd
elif japanese:
    latex_engine = latex_engine_user or 'platex'

[rtd-command-info] start-time: 2020-03-12T16:03:22.452197Z, end-time: 2020-03-12T16:03:35.019495Z, duration: 12, exit-code: 0
python sphinx-build -T -E -b readthedocs -d _build/doctrees-readthedocs -D language=en . _build/html
Running Sphinx v1.8.5
loading translations [en]... done
making output directory...
building [mo]: targets for 0 po files that are out of date
building [readthedocs]: targets for 62 source files that are out of date
updating environment: 62 added, 0 changed, 0 removed
reading sources... [  1%] README
reading sources... [  3%] breakout/biocontainers
reading sources... [  4%] breakout/datascience
reading sources... [  6%] breakout/workflows
reading sources... [  8%] buildenv/lib/python3.5/site-packages/Babel-2.5.3.dist-info/DESCRIPTION
reading sources... [  9%] buildenv/lib/python3.5/site-packages/CommonMark-0.5.4.dist-info/DESCRIPTION
reading sources... [ 11%] buildenv/lib/python3.5/site-packages/Jinja2-2.10.dist-info/DESCRIPTION
reading sources... [ 12%] buildenv/lib/python3.5/site-packages/MarkupSafe-1.0.dist-info/DESCRIPTION
reading sources... [ 14%] buildenv/lib/python3.5/site-packages/Pygments-2.2.0.dist-info/DESCRIPTION
reading sources... [ 16%] buildenv/lib/python3.5/site-packages/Sphinx-1.6.6.dist-info/DESCRIPTION
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**Docker for Data Science**
--------------------------
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.. currentmodule:: {{ module }}
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.. currentmodule:: {{ module }}
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----
.. Comment: Place URLS Below This Line
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3.1 Log into the Docker Hub Registry
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
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3.3 Private repositories
~~~~~~~~~~~~~~~~~~~~
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3.3 Private repositories
~~~~~~~~~~~~~~~~~~~~
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3.4 Pull down the Registry Image
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
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4.0 Automated Docker image building from GitHub
==============================================
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4.0 Automated Docker image building from GitHub
==============================================
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5.1 Bind mounts
^^^^^^^^^^^^^^^
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5.2 Create and manage volumes
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
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Populate a volume using a container
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
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.. code-block::

        HOSTNAME=790e13bba28a
        SHLVL=1
        HOME=/root
        PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
        PWD=/
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6.0 Docker Compose for multi-container apps
=========================================
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6.0 Docker Compose for multi-container apps
=========================================
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**Finding the perfect container**
============================
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Docker Registries
~~~~~~~~~~~~~~~~
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**Code of Conduct**
=================
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**Location**
~~~~~~
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**Learning objectives**
======================
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**FAIR Data principles**
=======================
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**FAIR Data principles**
=======================
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5.0 Building your own Containers from scratch
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
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5.2 Building Singularity containers
==================================
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5.2.1: Exercise (~30 minutes): Create a Singularity file
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
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5.2.1: Exercise (~30 minutes): Create a Singularity file
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
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image:: ../img/singularity.png
  :height: 200
  :width: 200

  <a href="https://sylabs.io/" target="blank">singularity</a>
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.. |singularity| image:: ../img/singularity.png
  :height: 200
  :width: 200

  <a href="https://sylabs.io/" target="blank">singularity</a>
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.. code-block:: bash
  BootStrap: debootstrap
  OSVersion: xenial
  MirrorURL: http://us.archive.ubuntu.com/ubuntu/

  %runscript
      echo "This is what happens when you run the container..."

  %post
      echo "Hello from inside the container"
      sed -i 's/$/ universe/' /etc/apt/sources.list
      apt update
      apt -y --allow-unauthenticated install vim build-essential wget gfortran bison libibverbs-dev libibmad-dev libibumad-dev librdmacm-dev libmlx5-dev libmlx4-dev
      wget http://mvapich.cse.ohio-state.edu/download/mvapich/mv2/mvapich2-2.1.tar.gz
      tar xvf mvapich2-2.1.tar.gz
      cd mvapich2-2.1
      ./configure --prefix=/usr/local
      make -j4
      make install
      /usr/local/bin/mpicc examples/hellow.c -o /usr/bin/hellow
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Singularity and GPU Computing
=================================
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**Basics of Linux**
==================
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*Common Linux Operating Systems*
--------------------------
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*Installing Linux*
-----------------
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*Installing Linux*
-----------------
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*Desktop-based Distributions*
~~~~~~
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*Windows Subsystem for Linux*
~~~~~~~~~~~~~~~~~~~~~~~~~~~
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*Windows Subsystem for Linux*
~~~~~~~~~~~~~~~~~~~~~~~~~~~
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*Windows Linux Dual boot*
~~~~~~~~~~~~~~~~~~~~~~~~
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*Windows Linux Dual boot*
~~~~~~~~~~~~~~~~~~~~~~~~
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*Package Managers*
~~~~~~~~~~~~~~~~
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*Package Managers*
~~~~~~~~~~~~~~~~
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*Self Paced*
----------
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*Self Paced*
----------
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pickling environment... done
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[rtd-command-info] start-time: 2020-03-12T16:03:35.315530Z, end-time: 2020-03-12T16:03:41.450455Z, duration: 6, exit-code: 0
python sphinx-build -T -b readthedocssinglehtmllocalmedia -d _build/doctrees-readthedocssinglehtmllocalmedia -D language=en . _build/localmedia
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**Docker for Data Science**
--------------------------
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----
.. Comment: Place URLS Below This Line
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3.1 Log into the Docker Hub Registry
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
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3.3 Private repositories
~~~~~~~~~~~~~~~~~~~~
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3.3 Private repositories
~~~~~~~~~~~~~~~~~~~~
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3.4 Pull down the Registry Image
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
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4.0 Automated Docker image building from GitHub
==============================================
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4.0 Automated Docker image building from GitHub
==============================================
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5.1 Bind mounts
^^^^^^^^^^^^^^^
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5.2 Create and manage volumes
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
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Populate a volume using a container
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
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.. code-block::

        HOSTNAME=790e13bba28a
        SHLVL=1
        HOME=/root
        PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
        PWD=/
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6.0 Docker Compose for multi-container apps
=========================================
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6.0 Docker Compose for multi-container apps
=========================================
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**Finding the perfect container**
============================
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Docker Registries
~~~~~~~~~~~~~~~~
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**Code of Conduct**
=================
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**Location**
~~~~~~
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**Learning objectives**
======================
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**FAIR Data principles**
=======================
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**FAIR Data principles**
=======================
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5.0 Building your own Containers from scratch
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
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5.2 Building Singularity containers
==================================
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5.2.1: Exercise (~30 minutes): Create a Singularity file
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
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5.2.1: Exercise (~30 minutes): Create a Singularity file
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
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image:: ../img/singularity.png
  :height: 200
  :width: 200

  <a href="https://sylabs.io/" target="blank">singularity</a>
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.. |singularity| image:: ../img/singularity.png
  :height: 200
  :width: 200

  <a href="https://sylabs.io/" target="blank">singularity</a>
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.. code-block:: bash
  BootStrap: debootstrap
  OSVersion: xenial
  MirrorURL: http://us.archive.ubuntu.com/ubuntu/

  %runscript
      echo "This is what happens when you run the container..."

  %post
      echo "Hello from inside the container"
      sed -i 's/$/ universe/' /etc/apt/sources.list
      apt update
      apt -y --allow-unauthenticated install vim build-essential wget gfortran bison libibverbs-dev libibmad-dev libibumad-dev librdmacm-dev libmlx5-dev libmlx4-dev
      wget http://mvapich.cse.ohio-state.edu/download/mvapich/mv2/mvapich2-2.1.tar.gz
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      cd mvapich2-2.1
      ./configure --prefix=/usr/local
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      /usr/local/bin/mpicc examples/hellow.c -o /usr/bin/hellow
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Singularity and GPU Computing
=================================
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**Basics of Linux**
==================
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*Common Linux Operating Systems*
--------------------------
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*Installing Linux*
-----------------
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*Installing Linux*
-----------------
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*Desktop-based Distributions*
~~~~~~
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*Windows Subsystem for Linux*
~~~~~~~~~~~~~~~~~~~~~~~~~~~
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*Windows Subsystem for Linux*
~~~~~~~~~~~~~~~~~~~~~~~~~~~
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*Windows Linux Dual boot*
~~~~~~~~~~~~~~~~~~~~~~~~
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*Windows Linux Dual boot*
~~~~~~~~~~~~~~~~~~~~~~~~
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*Package Managers*
~~~~~~~~~~~~~~~~
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*Package Managers*
~~~~~~~~~~~~~~~~
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*Self Paced*
----------
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*Self Paced*
----------
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assembling single document... getting_started/main getting_started/code_conduct getting_started/installation getting_started/location getting_started/agenda getting_started/about_cyverse topics/reproducibility topics/linux topics/train_docker topics/train_singularity topics/breakout_session docker/findingcontainers docker/dockerintro docker/dockeradvanced singularity/singularityintro singularity/singularityadvanced singularity/singularityhpc breakout/biocontainers breakout/workflows breakout/datascience cyverse/boot cyverse/tool_integration_app_building_DE cyverse/de_docker cyverse/vice_docker useful_resources/usefulresources_docker useful_resources/usefulresources_singularity useful_resources/usefulresources_other instructions_reporting/instructors instructions_reporting/problems 
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The HTML page is in _build/localmedia.

[rtd-command-info] start-time: 2020-03-12T16:03:41.910345Z, end-time: 2020-03-12T16:05:56.489495Z, duration: 134, exit-code: 0
python sphinx-build -b latex -D language=en -d _build/doctrees . _build/latex
Running Sphinx v1.8.5
loading translations [en]... done
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/home/docs/checkouts/readthedocs.org/user_builds/cyverse-cc-2020/envs/latest/lib/python3.7/site-packages/recommonmark/parser.py:65: UserWarning: Container node skipped: type=document
  warn("Container node skipped: type={0}".format(mdnode.t))
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**Docker for Data Science**
--------------------------
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maximum 1 argument(s) allowed, 3 supplied.

.. currentmodule:: {{ module }}
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maximum 1 argument(s) allowed, 3 supplied.

.. currentmodule:: {{ module }}
WARNING: invalid signature for autoclass ('{{ objname }}')
WARNING: don't know which module to import for autodocumenting '{{ objname }}' (try placing a "module" or "currentmodule" directive in the document, or giving an explicit module name)
WARNING: invalid signature for automodule ('{{ fullname }}')
WARNING: don't know which module to import for autodocumenting '{{ fullname }}' (try placing a "module" or "currentmodule" directive in the document, or giving an explicit module name)
/home/docs/checkouts/readthedocs.org/user_builds/cyverse-cc-2020/checkouts/latest/buildenv/lib/python3.5/site-packages/sphinx_rtd_theme-0.2.4.dist-info/DESCRIPTION.rst:: WARNING: image file not readable: buildenv/lib/python3.5/site-packages/sphinx_rtd_theme-0.2.4.dist-info/screen_mobile.png
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----
.. Comment: Place URLS Below This Line
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/home/docs/checkouts/readthedocs.org/user_builds/cyverse-cc-2020/checkouts/latest/docker/dockeradvanced.rst:260: WARNING: Title underline too short.

3.1 Log into the Docker Hub Registry
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
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3.3 Private repositories
~~~~~~~~~~~~~~~~~~~~
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3.3 Private repositories
~~~~~~~~~~~~~~~~~~~~
/home/docs/checkouts/readthedocs.org/user_builds/cyverse-cc-2020/checkouts/latest/docker/dockeradvanced.rst:316: WARNING: Title underline too short.

3.4 Pull down the Registry Image
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
/home/docs/checkouts/readthedocs.org/user_builds/cyverse-cc-2020/checkouts/latest/docker/dockeradvanced.rst:376: WARNING: Title underline too short.

4.0 Automated Docker image building from GitHub
==============================================
/home/docs/checkouts/readthedocs.org/user_builds/cyverse-cc-2020/checkouts/latest/docker/dockeradvanced.rst:376: WARNING: Title underline too short.

4.0 Automated Docker image building from GitHub
==============================================
/home/docs/checkouts/readthedocs.org/user_builds/cyverse-cc-2020/checkouts/latest/docker/dockeradvanced.rst:2: WARNING: Duplicate explicit target name: "docker hub".
/home/docs/checkouts/readthedocs.org/user_builds/cyverse-cc-2020/checkouts/latest/docker/dockeradvanced.rst:568: WARNING: Title level inconsistent:

5.1 Bind mounts
^^^^^^^^^^^^^^^
/home/docs/checkouts/readthedocs.org/user_builds/cyverse-cc-2020/checkouts/latest/docker/dockeradvanced.rst:582: WARNING: Title level inconsistent:

5.2 Create and manage volumes
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
/home/docs/checkouts/readthedocs.org/user_builds/cyverse-cc-2020/checkouts/latest/docker/dockeradvanced.rst:632: WARNING: Title level inconsistent:

Populate a volume using a container
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
/home/docs/checkouts/readthedocs.org/user_builds/cyverse-cc-2020/checkouts/latest/docker/dockeradvanced.rst:651: WARNING: Error in "code-block" directive:
1 argument(s) required, 0 supplied.

.. code-block::

        HOSTNAME=790e13bba28a
        SHLVL=1
        HOME=/root
        PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
        PWD=/
/home/docs/checkouts/readthedocs.org/user_builds/cyverse-cc-2020/checkouts/latest/docker/dockeradvanced.rst:725: WARNING: Title underline too short.

6.0 Docker Compose for multi-container apps
=========================================
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6.0 Docker Compose for multi-container apps
=========================================
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**Finding the perfect container**
============================
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Docker Registries
~~~~~~~~~~~~~~~~
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**Code of Conduct**
=================
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**Location**
~~~~~~
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**Learning objectives**
======================
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**FAIR Data principles**
=======================
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**FAIR Data principles**
=======================
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5.0 Building your own Containers from scratch
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
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5.2 Building Singularity containers
==================================
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5.2.1: Exercise (~30 minutes): Create a Singularity file
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
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5.2.1: Exercise (~30 minutes): Create a Singularity file
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
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image:: ../img/singularity.png
  :height: 200
  :width: 200

  <a href="https://sylabs.io/" target="blank">singularity</a>
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.. |singularity| image:: ../img/singularity.png
  :height: 200
  :width: 200

  <a href="https://sylabs.io/" target="blank">singularity</a>
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.. code-block:: bash
  BootStrap: debootstrap
  OSVersion: xenial
  MirrorURL: http://us.archive.ubuntu.com/ubuntu/

  %runscript
      echo "This is what happens when you run the container..."

  %post
      echo "Hello from inside the container"
      sed -i 's/$/ universe/' /etc/apt/sources.list
      apt update
      apt -y --allow-unauthenticated install vim build-essential wget gfortran bison libibverbs-dev libibmad-dev libibumad-dev librdmacm-dev libmlx5-dev libmlx4-dev
      wget http://mvapich.cse.ohio-state.edu/download/mvapich/mv2/mvapich2-2.1.tar.gz
      tar xvf mvapich2-2.1.tar.gz
      cd mvapich2-2.1
      ./configure --prefix=/usr/local
      make -j4
      make install
      /usr/local/bin/mpicc examples/hellow.c -o /usr/bin/hellow
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Singularity and GPU Computing
=================================
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**Basics of Linux**
==================
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*Common Linux Operating Systems*
--------------------------
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*Installing Linux*
-----------------
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*Installing Linux*
-----------------
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*Desktop-based Distributions*
~~~~~~
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*Windows Subsystem for Linux*
~~~~~~~~~~~~~~~~~~~~~~~~~~~
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*Windows Subsystem for Linux*
~~~~~~~~~~~~~~~~~~~~~~~~~~~
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*Windows Linux Dual boot*
~~~~~~~~~~~~~~~~~~~~~~~~
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*Windows Linux Dual boot*
~~~~~~~~~~~~~~~~~~~~~~~~
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*Package Managers*
~~~~~~~~~~~~~~~~
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*Package Managers*
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*Self Paced*
----------
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*Self Paced*
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Run 'make' in that directory to run these through (pdf)latex
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cat latexmkrc
$latex = 'latex ' . $ENV{'LATEXOPTS'} . ' %O %S';
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$makeindex = 'makeindex -s python.ist %O -o %D %S';
add_cus_dep( "glo", "gls", 0, "makeglo" );
sub makeglo {
 return system( "makeindex -s gglo.ist -o '$_[0].gls' '$_[0].glo'" );
}

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Chapter 1.
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Chapter 2.
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Chapter 3.
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Chapter 4.
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[][][]\T1/ptm/m/n/10 Download Cy-Verse Cy-ber-
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Chapter 17.
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Chapter 18.
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Chapter 19.
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Chapter 20.
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Chapter 21.
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Chapter 22.
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Chapter 23.
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Chapter 24.

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Chapter 25.

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Chapter 32.

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ng2.png> <./homeicon1.png> <./cc-boat.png (PNG copy)> <./cyverse_learning1.png>
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Chapter 1.
[3] [4]
Chapter 2.
[5] [6]
Chapter 3.
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Chapter 4.
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[][][]\T1/ptm/m/n/10 Download Cy-Verse Cy-ber-
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Chapter 5.
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Chapter 6.

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[]\T1/ptm/m/n/10 In-tro-duc-tion to Sin-gu-lar-ity (Tyson

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[14] [15] [16]
Chapter 7.
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Chapter 8.
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Chapter 9.
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Chapter 10.
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Chapter 11.
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Chapter 12.
[27 <./cyverse_cmyk1.png>] [28 <./homeicon3.png>]
Chapter 13.
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Chapter 14.
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[]\T1/ptm/m/n/10 You can change the en-try-point of a con-tainer by mak-ing a s
tate-ment af-ter the \T1/pcr/m/n/10 repository/
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[]|\T1/ptm/m/it/10 Usage: \T1/pcr/m/n/10 docker run -it user/image:tag

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[46] [47] [48 <./portainer_demo.png>] [49 <./pwd.png>] [50]
Chapter 15.
[51] [52] [53] [54] [55] [56 <./docker_image.png>] [57 <./private_registry.png>
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\T1/ptm/b/n/10 Note:  \T1/ptm/m/n/10 File lo-ca-tion on Mac OS X is a bit dif-f
er-ent: [][]$https : / / timonweb . com / posts /
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Chapter 16.
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[79] [80] [81] [82]
Chapter 17.
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Chapter 18.
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Chapter 19.
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Chapter 20.
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Chapter 21.
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Chapter 22.
[95] [96 <./cyverse_cmyk.png> <./homeicon2.png>]
Chapter 23.
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Chapter 24.

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Chapter 25.

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Chapter 26.
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Chapter 27.
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Chapter 28.
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Chapter 29.

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Chapter 30.
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Chapter 31.

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Chapter 32.

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Chapter 33.
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Chapter 34.
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Chapter 35.
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Chapter 36.
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Chapter 18.
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Chapter 19.
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Chapter 23.
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Chapter 24.

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Chapter 25.

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Chapter 28.
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l.4546 ...your version of Linux/Windows/OSX/OS9 
                                                  — well this is where D...


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l.4546 ...ersion of Linux/Windows/OSX/OS9 — 
                                                  well this is where Docker ...


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l.4589 ...r compose file. And there you have it 
                                                  — a quick and easy way...


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l.4589 ...ose file. And there you have it — 
                                                  a quick and easy way to st...


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Chapter 29.

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Chapter 30.
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Chapter 31.

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[146]
Chapter 32.

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Chapter 33.
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Chapter 36.
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Chapter 37.
(./cyverse-cc-2020.ind) [167] (./cyverse-cc-2020.aux) )
(see the transcript file for additional information){/usr/share/texlive/texmf-d
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Output written on cyverse-cc-2020.pdf (171 pages, 11086405 bytes).
Transcript written on cyverse-cc-2020.log.
Latexmk: Index file 'cyverse-cc-2020.idx' was written
Latexmk: Log file says output to 'cyverse-cc-2020.pdf'
Collected error summary (may duplicate other messages):
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Latexmk: Errors, in force_mode: so I tried finishing targets

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python sphinx-build -T -b epub -d _build/doctrees-epub -D language=en . _build/epub
Running Sphinx v1.8.5
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**Docker for Data Science**
--------------------------
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----
.. Comment: Place URLS Below This Line
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3.1 Log into the Docker Hub Registry
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
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3.3 Private repositories
~~~~~~~~~~~~~~~~~~~~
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3.3 Private repositories
~~~~~~~~~~~~~~~~~~~~
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3.4 Pull down the Registry Image
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
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4.0 Automated Docker image building from GitHub
==============================================
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4.0 Automated Docker image building from GitHub
==============================================
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5.1 Bind mounts
^^^^^^^^^^^^^^^
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5.2 Create and manage volumes
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
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Populate a volume using a container
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
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.. code-block::

        HOSTNAME=790e13bba28a
        SHLVL=1
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        PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
        PWD=/
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6.0 Docker Compose for multi-container apps
=========================================
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6.0 Docker Compose for multi-container apps
=========================================
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**Finding the perfect container**
============================
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Docker Registries
~~~~~~~~~~~~~~~~
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**Code of Conduct**
=================
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**Location**
~~~~~~
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**Learning objectives**
======================
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**FAIR Data principles**
=======================
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**FAIR Data principles**
=======================
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5.0 Building your own Containers from scratch
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
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5.2 Building Singularity containers
==================================
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5.2.1: Exercise (~30 minutes): Create a Singularity file
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
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5.2.1: Exercise (~30 minutes): Create a Singularity file
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
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image:: ../img/singularity.png
  :height: 200
  :width: 200

  <a href="https://sylabs.io/" target="blank">singularity</a>
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.. |singularity| image:: ../img/singularity.png
  :height: 200
  :width: 200

  <a href="https://sylabs.io/" target="blank">singularity</a>
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.. code-block:: bash
  BootStrap: debootstrap
  OSVersion: xenial
  MirrorURL: http://us.archive.ubuntu.com/ubuntu/

  %runscript
      echo "This is what happens when you run the container..."

  %post
      echo "Hello from inside the container"
      sed -i 's/$/ universe/' /etc/apt/sources.list
      apt update
      apt -y --allow-unauthenticated install vim build-essential wget gfortran bison libibverbs-dev libibmad-dev libibumad-dev librdmacm-dev libmlx5-dev libmlx4-dev
      wget http://mvapich.cse.ohio-state.edu/download/mvapich/mv2/mvapich2-2.1.tar.gz
      tar xvf mvapich2-2.1.tar.gz
      cd mvapich2-2.1
      ./configure --prefix=/usr/local
      make -j4
      make install
      /usr/local/bin/mpicc examples/hellow.c -o /usr/bin/hellow
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Singularity and GPU Computing
=================================
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**Basics of Linux**
==================
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*Common Linux Operating Systems*
--------------------------
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*Installing Linux*
-----------------
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*Installing Linux*
-----------------
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*Desktop-based Distributions*
~~~~~~
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*Windows Subsystem for Linux*
~~~~~~~~~~~~~~~~~~~~~~~~~~~
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*Windows Subsystem for Linux*
~~~~~~~~~~~~~~~~~~~~~~~~~~~
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*Windows Linux Dual boot*
~~~~~~~~~~~~~~~~~~~~~~~~
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*Windows Linux Dual boot*
~~~~~~~~~~~~~~~~~~~~~~~~
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*Package Managers*
~~~~~~~~~~~~~~~~
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*Package Managers*
~~~~~~~~~~~~~~~~
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*Self Paced*
----------
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*Self Paced*
----------
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/home/docs/checkouts/readthedocs.org/user_builds/cyverse-cc-2020/checkouts/latest/docker/dockeradvanced.rst:719: WARNING: Could not lex literal_block as "bash". Highlighting skipped.
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build succeeded, 127 warnings.

The ePub file is in _build/epub.

[rtd-command-info] start-time: 2020-03-12T16:14:11.130609Z, end-time: 2020-03-12T16:14:11.340383Z, duration: 0, exit-code: 0
mv -f /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cc-2020/checkouts/latest/./_build/epub/CyVerseLearningInstitute-ContainerCamp2020.epub /home/docs/checkouts/readthedocs.org/user_builds/cyverse-cc-2020/artifacts/latest/sphinx_epub/cyverse-cc-2020.epub