Read the Docs build information Build id: 2855665 Project: tiledb-inc-tiledb-py Version: 2170 Commit: 8f230f3e0e62b51e6681a51480754c90f202cc54 Date: 2025-03-05T14:39:31.207893Z State: finished Success: True [rtd-command-info] start-time: 2025-03-05T14:39:32.089656Z, end-time: 2025-03-05T14:39:32.571001Z, duration: 0, exit-code: 0 git clone --depth 1 https://github.com/TileDB-Inc/TileDB-Py.git . Cloning into '.'... [rtd-command-info] start-time: 2025-03-05T14:39:32.629686Z, end-time: 2025-03-05T14:39:33.576274Z, duration: 0, exit-code: 0 git fetch origin --force --prune --prune-tags --depth 50 pull/2170/head:external-2170 From https://github.com/TileDB-Inc/TileDB-Py * [new ref] refs/pull/2170/head -> external-2170 * [new tag] 0.33.1 -> 0.33.1 * [new tag] 0.33.2 -> 0.33.2 * [new tag] 0.33.3 -> 0.33.3 * [new tag] 0.33.4 -> 0.33.4 [rtd-command-info] start-time: 2025-03-05T14:39:33.690112Z, end-time: 2025-03-05T14:39:33.743237Z, duration: 0, exit-code: 0 git checkout --force 8f230f3e0e62b51e6681a51480754c90f202cc54 Note: switching to '8f230f3e0e62b51e6681a51480754c90f202cc54'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 8f230f3 Clarity [rtd-command-info] start-time: 2025-03-05T14:39:33.806601Z, end-time: 2025-03-05T14:39:33.844775Z, duration: 0, exit-code: 0 cat .readthedocs.yml # Don't build any extra formats formats: [] # Use RTD config version 2 # https://docs.readthedocs.io/en/stable/config-file/v2.html version: 2 # Set build OS to avoid build failures with old compiler build: os: "ubuntu-22.04" tools: python: "3.12" sphinx: configuration: doc/source/conf.py python: install: - method: pip path: . extra_requirements: - doc [rtd-command-info] start-time: 2025-03-05T14:39:38.145495Z, end-time: 2025-03-05T14:39:38.198799Z, duration: 0, exit-code: 0 asdf global python 3.12.7 [rtd-command-info] start-time: 2025-03-05T14:39:38.520642Z, end-time: 2025-03-05T14:39:39.532946Z, duration: 1, exit-code: 0 python -mvirtualenv $READTHEDOCS_VIRTUALENV_PATH created virtual environment CPython3.12.7.final.0-64 in 707ms creator CPython3Posix(dest=/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/2170, clear=False, no_vcs_ignore=False, global=False) seeder FromAppData(download=False, pip=bundle, setuptools=bundle, wheel=bundle, via=copy, app_data_dir=/home/docs/.local/share/virtualenv) added seed packages: pip==23.1, setuptools==67.6.1, wheel==0.40.0 activators BashActivator,CShellActivator,FishActivator,NushellActivator,PowerShellActivator,PythonActivator [rtd-command-info] start-time: 2025-03-05T14:39:39.611340Z, end-time: 2025-03-05T14:39:51.084267Z, duration: 11, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip setuptools Requirement already satisfied: pip in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/2170/lib/python3.12/site-packages (23.1) Collecting pip Downloading pip-25.0.1-py3-none-any.whl (1.8 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.8/1.8 MB 9.7 MB/s 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charset_normalizer-3.4.1-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (145 kB) Downloading idna-3.10-py3-none-any.whl (70 kB) Downloading MarkupSafe-3.0.2-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (23 kB) Downloading urllib3-2.3.0-py3-none-any.whl (128 kB) Installing collected packages: snowballstemmer, urllib3, sphinxcontrib-serializinghtml, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, roman-numerals-py, Pygments, packaging, MarkupSafe, imagesize, idna, docutils, charset-normalizer, certifi, babel, alabaster, requests, Jinja2, sphinx Successfully installed Jinja2-3.1.5 MarkupSafe-3.0.2 Pygments-2.19.1 alabaster-1.0.0 babel-2.17.0 certifi-2025.1.31 charset-normalizer-3.4.1 docutils-0.21.2 idna-3.10 imagesize-1.4.1 packaging-24.2 requests-2.32.3 roman-numerals-py-3.1.0 snowballstemmer-2.2.0 sphinx-8.2.3 sphinxcontrib-applehelp-2.0.0 sphinxcontrib-devhelp-2.0.0 sphinxcontrib-htmlhelp-2.1.0 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-qthelp-2.0.0 sphinxcontrib-serializinghtml-2.0.0 urllib3-2.3.0 [rtd-command-info] start-time: 2025-03-05T14:39:57.321140Z, end-time: 2025-03-05T14:42:21.277261Z, duration: 143, exit-code: 0 python -m pip install --upgrade --upgrade-strategy only-if-needed --no-cache-dir .[doc] Processing /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/2170 Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Installing backend dependencies: started Installing backend dependencies: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Collecting numpy>=1.25 (from tiledb==0.33.5.dev8+g8f230f3) Downloading numpy-2.2.3-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (62 kB) Requirement already satisfied: packaging in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/2170/lib/python3.12/site-packages (from tiledb==0.33.5.dev8+g8f230f3) (24.2) Requirement already satisfied: jinja2==3.1.5 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/2170/lib/python3.12/site-packages (from tiledb==0.33.5.dev8+g8f230f3) (3.1.5) Collecting sphinx-rtd-theme==3.0.2 (from tiledb==0.33.5.dev8+g8f230f3) Downloading sphinx_rtd_theme-3.0.2-py2.py3-none-any.whl.metadata (4.4 kB) Collecting Sphinx==8.1.3 (from tiledb==0.33.5.dev8+g8f230f3) Downloading sphinx-8.1.3-py3-none-any.whl.metadata (6.4 kB) Collecting nbsphinx==0.9.6 (from tiledb==0.33.5.dev8+g8f230f3) Downloading nbsphinx-0.9.6-py3-none-any.whl.metadata (2.1 kB) Collecting breathe (from tiledb==0.33.5.dev8+g8f230f3) Downloading breathe-4.36.0-py3-none-any.whl.metadata (7.6 kB) 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mistune-3.1.2-py3-none-any.whl.metadata (1.7 kB) Collecting nbclient>=0.5.0 (from nbconvert!=5.4,>=5.3->nbsphinx==0.9.6->tiledb==0.33.5.dev8+g8f230f3) Downloading nbclient-0.10.2-py3-none-any.whl.metadata (8.3 kB) Collecting pandocfilters>=1.4.1 (from nbconvert!=5.4,>=5.3->nbsphinx==0.9.6->tiledb==0.33.5.dev8+g8f230f3) Downloading pandocfilters-1.5.1-py2.py3-none-any.whl.metadata (9.0 kB) Collecting fastjsonschema>=2.15 (from nbformat->nbsphinx==0.9.6->tiledb==0.33.5.dev8+g8f230f3) Downloading fastjsonschema-2.21.1-py3-none-any.whl.metadata (2.2 kB) Collecting jsonschema>=2.6 (from nbformat->nbsphinx==0.9.6->tiledb==0.33.5.dev8+g8f230f3) Downloading jsonschema-4.23.0-py3-none-any.whl.metadata (7.9 kB) Requirement already satisfied: charset-normalizer<4,>=2 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/2170/lib/python3.12/site-packages (from requests>=2.30.0->Sphinx==8.1.3->tiledb==0.33.5.dev8+g8f230f3) (3.4.1) Requirement already satisfied: idna<4,>=2.5 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tiledb Building wheel for tiledb (pyproject.toml): started Building wheel for tiledb (pyproject.toml): still running... Building wheel for tiledb (pyproject.toml): still running... Building wheel for tiledb (pyproject.toml): finished with status 'done' Created wheel for tiledb: filename=tiledb-0.33.5.dev8+g8f230f3-cp312-cp312-linux_x86_64.whl size=16963310 sha256=637453fd97fda72e9ebf7083ddb7ff8935792ecf0478e6ee5eac242d79bc60b6 Stored in directory: /tmp/pip-ephem-wheel-cache-obqzsfk4/wheels/f3/3d/87/0da24b4828d06fb121fb2435453b6d2afda5b907ad1e1b5544 Successfully built tiledb Installing collected packages: webencodings, fastjsonschema, typing-extensions, traitlets, tornado, tinycss2, soupsieve, six, rpds-py, pyzmq, platformdirs, pandocfilters, numpy, mistune, jupyterlab-pygments, defusedxml, bleach, attrs, tiledb, Sphinx, referencing, python-dateutil, jupyter-core, beautifulsoup4, sphinxcontrib-jquery, jupyter-client, jsonschema-specifications, breathe, sphinx-rtd-theme, jsonschema, nbformat, nbclient, nbconvert, nbsphinx Attempting uninstall: Sphinx Found existing installation: Sphinx 8.2.3 Uninstalling Sphinx-8.2.3: Successfully uninstalled Sphinx-8.2.3 Successfully installed Sphinx-8.1.3 attrs-25.1.0 beautifulsoup4-4.13.3 bleach-6.2.0 breathe-4.36.0 defusedxml-0.7.1 fastjsonschema-2.21.1 jsonschema-4.23.0 jsonschema-specifications-2024.10.1 jupyter-client-8.6.3 jupyter-core-5.7.2 jupyterlab-pygments-0.3.0 mistune-3.1.2 nbclient-0.10.2 nbconvert-7.16.6 nbformat-5.10.4 nbsphinx-0.9.6 numpy-2.2.3 pandocfilters-1.5.1 platformdirs-4.3.6 python-dateutil-2.9.0.post0 pyzmq-26.2.1 referencing-0.36.2 rpds-py-0.23.1 six-1.17.0 soupsieve-2.6 sphinx-rtd-theme-3.0.2 sphinxcontrib-jquery-4.1 tiledb-0.33.5.dev8+g8f230f3 tinycss2-1.4.0 tornado-6.4.2 traitlets-5.14.3 typing-extensions-4.12.2 webencodings-0.5.1 [rtd-command-info] start-time: 2025-03-05T14:42:21.450653Z, end-time: 2025-03-05T14:42:21.490428Z, duration: 0, exit-code: 0 cat doc/source/conf.py #!/usr/bin/env python3 # -*- coding: utf-8 -*- # # -- Imports configuration ------------------------------------------------- import os import sys from os.path import abspath, dirname, join import sphinx_rtd_theme from importlib.metadata import version as get_version sys.path.insert(0, abspath(join(dirname(__file__)))) # -- ReadTheDocs configuration --------------------------------------------- # Special handling on ReadTheDocs builds. # Some of this code is from https://github.com/robotpy/robotpy-docs/blob/master/conf.py readthedocs = os.environ.get("READTHEDOCS", None) == "True" rtd_version = os.environ.get("READTHEDOCS_VERSION", "latest") rtd_version = rtd_version if rtd_version in ["stable", "latest"] else "stable" # -- Project information ----------------------------------------------------- project = "TileDB-Py" copyright = "2025, TileDB, Inc." author = "TileDB, Inc." # The full version, including alpha/beta/rc tags release: str = get_version("tiledb") # The short X.Y version version: str = ".".join(release.split(".")[:2]) # -- General configuration --------------------------------------------------- # If your documentation needs a minimal Sphinx version, state it here. # # needs_sphinx = '1.0' # Add any Sphinx extension module names here, as strings. They can be # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom # ones. extensions = [ "sphinx.ext.autodoc", "sphinx.ext.doctest", "sphinx.ext.intersphinx", "sphinx.ext.napoleon", "sphinx.ext.autosummary", "nbsphinx", "sphinxcontrib.jquery", ] autosummary_generate = True # Mapping for linking between RTD subprojects. if readthedocs: intersphinx_mapping = { "tiledb": ( "https://tiledb-inc-tiledb.readthedocs-hosted.com/en/%s/" % rtd_version, None, ), "tiledb-py": ( "https://tiledb-inc-tiledb.readthedocs-hosted.com/projects/python-api/en/%s/" % rtd_version, None, ), "python": ( "https://docs.python.org/3", None, ), } napoleon_custom_sections = ["Lifecycle"] # Add any paths that contain templates here, relative to this directory. templates_path = ["_templates"] # The suffix(es) of source filenames. # You can specify multiple suffix as a list of string: # # source_suffix = ['.rst', '.md'] source_suffix = ".rst" # The master toctree document. master_doc = "index" # The language for content autogenerated by Sphinx. Refer to documentation # for a list of supported languages. # # This is also used if you do content translation via gettext catalogs. # Usually you set "language" from the command line for these cases. language = "en" # List of patterns, relative to source directory, that match files and # directories to ignore when looking for source files. # This pattern also affects html_static_path and html_extra_path . exclude_patterns = ["_build", "Thumbs.db", ".DS_Store"] # The name of the Pygments (syntax highlighting) style to use. pygments_style = "friendly" # -- Options for HTML output ------------------------------------------------- html_static_path = ["_static"] html_title = "TileDB Python API Reference — TileDB-Py %s documentation" % version html_logo = "_static/tiledb-logo_color_no_margin_@4x.png" html_favicon = "_static/favicon.ico" html_theme = "sphinx_rtd_theme" html_theme_path = [sphinx_rtd_theme.get_html_theme_path()] # -- Options for HTMLHelp output --------------------------------------------- # Output file base name for HTML help builder. htmlhelp_basename = "TileDB-Pydoc" # -- Options for LaTeX output ------------------------------------------------ latex_elements = { # The paper size ('letterpaper' or 'a4paper'). # # 'papersize': 'letterpaper', # The font size ('10pt', '11pt' or '12pt'). # # 'pointsize': '10pt', # Additional stuff for the LaTeX preamble. # # 'preamble': '', # Latex figure (float) alignment # # 'figure_align': 'htbp', } # Grouping the document tree into LaTeX files. List of tuples # (source start file, target name, title, # author, documentclass [howto, manual, or own class]). latex_documents = [ (master_doc, "TileDB-Py.tex", "TileDB-Py Documentation", "TileDB, Inc.", "manual") ] # -- Options for manual page output ------------------------------------------ # One entry per manual page. List of tuples # (source start file, name, description, authors, manual section). man_pages = [(master_doc, "tiledb-py", "TileDB-Py Documentation", [author], 1)] # -- Options for Texinfo output ---------------------------------------------- # Grouping the document tree into Texinfo files. List of tuples # (source start file, target name, title, author, # dir menu entry, description, category) texinfo_documents = [ ( master_doc, "TileDB-Py", "TileDB-Py Documentation", author, "TileDB-Py", "One line description of project.", "Miscellaneous", ) ] # -- Custom Document processing ---------------------------------------------- # Generate the sidebar automatically so that it is identical across all subprojects. # This (and gensidebar.py) from https://github.com/robotpy/robotpy-docs import gensidebar gensidebar.generate_sidebar( {"on_rtd": readthedocs, "rtd_version": rtd_version}, "tiledb-py" ) # -- Custom setup ----------------------------------------------------------- def setup(app): app.add_css_file("custom.css") [rtd-command-info] start-time: 2025-03-05T14:42:21.556549Z, end-time: 2025-03-05T14:42:25.968543Z, duration: 4, exit-code: 0 python -m sphinx -T -b html -d _build/doctrees -D language=en . $READTHEDOCS_OUTPUT/html Running Sphinx v8.1.3 WARNING: Calling get_html_theme_path is deprecated. If you are calling it to define html_theme_path, you are safe to remove that code. loading translations [en]... done making output directory... done Converting `source_suffix = '.rst'` to `source_suffix = {'.rst': 'restructuredtext'}`. loading intersphinx inventory 'tiledb' from https://tiledb-inc-tiledb.readthedocs-hosted.com/en/stable/objects.inv ... loading intersphinx inventory 'tiledb-py' from https://tiledb-inc-tiledb.readthedocs-hosted.com/projects/python-api/en/stable/objects.inv ... loading intersphinx inventory 'python' from https://docs.python.org/3/objects.inv ... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory 'https://tiledb-inc-tiledb.readthedocs-hosted.com/projects/python-api/en/stable/objects.inv' not fetchable due to : 404 Client Error: Not Found for url: https://tiledb-inc-tiledb.readthedocs-hosted.com/projects/python-api/en/stable/objects.inv [autosummary] generating autosummary for: index.rst, python-api.rst Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/2170/_readthedocs/html/_static/nbsphinx-code-cells.css building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 2 source files that are out of date updating environment: [new config] 2 added, 0 changed, 0 removed reading sources... [ 50%] index reading sources... [100%] python-api looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done copying assets... copying static files... Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/2170/_readthedocs/html/_static/language_data.js Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/2170/_readthedocs/html/_static/basic.css Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/2170/_readthedocs/html/_static/documentation_options.js Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/2170/_readthedocs/html/_static/js/versions.js copying static files: done copying extra files... copying extra files: done copying assets: done writing output... [ 50%] index writing output... [100%] python-api generating indices... genindex done copying linked files... copying notebooks ... writing additional pages... search done dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 2 warnings. The HTML pages are in ../../_readthedocs/html.