Read the Docs build information Build id: 282045 Project: northeastern-university-rc-public-documentation Version: latest Commit: df45d3ef4583a1bfeb2124fcd5b7150ca8eb0248 Date: 2020-01-29T14:00:04.665043Z State: finished Success: True [rtd-command-info] start-time: 2020-01-29T14:00:06.770891Z, end-time: 2020-01-29T14:00:06.992533Z, duration: 0, exit-code: 0 git remote set-url origin https://github.com/neu-rc-admin/rc-public-documentation.git [rtd-command-info] start-time: 2020-01-29T14:00:07.068232Z, end-time: 2020-01-29T14:00:09.676731Z, duration: 2, exit-code: 0 git fetch origin --force --tags --prune --prune-tags --depth 50 From https://github.com/neu-rc-admin/rc-public-documentation cebe55e..df45d3e master -> origin/master [rtd-command-info] start-time: 2020-01-29T14:00:09.905980Z, end-time: 2020-01-29T14:00:10.130559Z, duration: 0, exit-code: 0 git checkout --force origin/master Previous HEAD position was cebe55e removed "Edit on Github" button from HTML build HEAD is now at df45d3e updates to module topic [rtd-command-info] start-time: 2020-01-29T14:00:10.213861Z, end-time: 2020-01-29T14:00:10.544663Z, duration: 0, exit-code: 0 git clean -d -f -f Removing docs/source/_build/ [rtd-command-info] start-time: 2020-01-29T14:00:13.035744Z, end-time: 2020-01-29T14:00:18.247147Z, duration: 5, exit-code: 0 python3.7 -mvirtualenv --no-site-packages Using base prefix '/home/docs/.pyenv/versions/3.7.3' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/envs/latest/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/envs/latest/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2020-01-29T14:00:18.326804Z, end-time: 2020-01-29T14:00:19.248859Z, duration: 0, exit-code: 0 python -m pip install --upgrade --cache-dir /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/.cache/pip pip Requirement already up-to-date: pip in /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/envs/latest/lib/python3.7/site-packages (20.0.2) [rtd-command-info] start-time: 2020-01-29T14:00:19.326617Z, end-time: 2020-01-29T14:00:30.415179Z, duration: 11, exit-code: 0 python -m pip install --upgrade --cache-dir /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/.cache/pip Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1 Collecting Pygments==2.3.1 Using cached Pygments-2.3.1-py2.py3-none-any.whl (849 kB) Collecting setuptools==41.0.1 Downloading setuptools-41.0.1-py2.py3-none-any.whl (575 kB) Collecting docutils==0.14 Using cached docutils-0.14-py3-none-any.whl (543 kB) Processing /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/.cache/pip/wheels/16/03/37/f0a64ab894c9102906f192db1a4071b7592292ad661563c69b/mock-1.0.1-py3-none-any.whl Collecting pillow==5.4.1 Using cached Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Using cached alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting commonmark==0.8.1 Using cached commonmark-0.8.1-py2.py3-none-any.whl (47 kB) Collecting recommonmark==0.5.0 Using cached recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Using cached Sphinx-1.8.5-py2.py3-none-any.whl (3.1 MB) Collecting sphinx-rtd-theme<0.5 Using cached sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) Collecting readthedocs-sphinx-ext<1.1 Using cached readthedocs_sphinx_ext-1.0.1-py2.py3-none-any.whl (14 kB) Processing /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/.cache/pip/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0/future-0.18.2-py3-none-any.whl Collecting Jinja2>=2.3 Using cached Jinja2-2.11.0-py2.py3-none-any.whl (126 kB) Collecting imagesize Using cached imagesize-1.2.0-py2.py3-none-any.whl (4.8 kB) Collecting requests>=2.0.0 Using cached requests-2.22.0-py2.py3-none-any.whl (57 kB) Collecting sphinxcontrib-websupport Using cached sphinxcontrib_websupport-1.1.2-py2.py3-none-any.whl (39 kB) Collecting snowballstemmer>=1.1 Using cached snowballstemmer-2.0.0-py2.py3-none-any.whl (97 kB) Collecting packaging Using cached packaging-20.1-py2.py3-none-any.whl (36 kB) Collecting babel!=2.0,>=1.3 Using cached Babel-2.8.0-py2.py3-none-any.whl (8.6 MB) Collecting six>=1.5 Using cached six-1.14.0-py2.py3-none-any.whl (10 kB) Collecting MarkupSafe>=0.23 Using cached MarkupSafe-1.1.1-cp37-cp37m-manylinux1_x86_64.whl (27 kB) Collecting certifi>=2017.4.17 Using cached certifi-2019.11.28-py2.py3-none-any.whl (156 kB) Collecting chardet<3.1.0,>=3.0.2 Using cached chardet-3.0.4-py2.py3-none-any.whl (133 kB) Collecting urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 Using cached urllib3-1.25.8-py2.py3-none-any.whl (125 kB) Collecting idna<2.9,>=2.5 Using cached idna-2.8-py2.py3-none-any.whl (58 kB) Collecting pyparsing>=2.0.2 Using cached pyparsing-2.4.6-py2.py3-none-any.whl (67 kB) Collecting pytz>=2015.7 Using cached pytz-2019.3-py2.py3-none-any.whl (509 kB) Installing collected packages: Pygments, setuptools, docutils, mock, pillow, alabaster, future, commonmark, MarkupSafe, Jinja2, imagesize, certifi, chardet, urllib3, idna, requests, sphinxcontrib-websupport, snowballstemmer, six, pyparsing, packaging, pytz, babel, sphinx, recommonmark, sphinx-rtd-theme, readthedocs-sphinx-ext Attempting uninstall: setuptools Found existing installation: setuptools 45.1.0 Uninstalling setuptools-45.1.0: Successfully uninstalled setuptools-45.1.0 Successfully installed Jinja2-2.11.0 MarkupSafe-1.1.1 Pygments-2.3.1 alabaster-0.7.12 babel-2.8.0 certifi-2019.11.28 chardet-3.0.4 commonmark-0.8.1 docutils-0.14 future-0.18.2 idna-2.8 imagesize-1.2.0 mock-1.0.1 packaging-20.1 pillow-5.4.1 pyparsing-2.4.6 pytz-2019.3 readthedocs-sphinx-ext-1.0.1 recommonmark-0.5.0 requests-2.22.0 setuptools-41.0.1 six-1.14.0 snowballstemmer-2.0.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-websupport-1.1.2 urllib3-1.25.8 [rtd-command-info] start-time: 2020-01-29T14:00:30.517663Z, end-time: 2020-01-29T14:00:31.660911Z, duration: 1, exit-code: 0 python -m pip install --exists-action=w --cache-dir /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/.cache/pip -r docs/requirements.txt Collecting sphinx-markdown-tables==0.0.12 Using cached sphinx_markdown_tables-0.0.12-py3-none-any.whl (15 kB) Requirement already satisfied: sphinx-rtd-theme==0.4.3 in /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/envs/latest/lib/python3.7/site-packages (from -r docs/requirements.txt (line 2)) (0.4.3) Collecting markdown==3.0.1 Using cached Markdown-3.0.1-py2.py3-none-any.whl (89 kB) Requirement already satisfied: sphinx in /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/envs/latest/lib/python3.7/site-packages (from sphinx-rtd-theme==0.4.3->-r docs/requirements.txt (line 2)) (1.8.5) Requirement already satisfied: docutils>=0.11 in /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/envs/latest/lib/python3.7/site-packages (from sphinx->sphinx-rtd-theme==0.4.3->-r docs/requirements.txt (line 2)) (0.14) Requirement already satisfied: requests>=2.0.0 in /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/envs/latest/lib/python3.7/site-packages (from sphinx->sphinx-rtd-theme==0.4.3->-r docs/requirements.txt (line 2)) (2.22.0) Requirement already satisfied: imagesize in /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/envs/latest/lib/python3.7/site-packages (from sphinx->sphinx-rtd-theme==0.4.3->-r docs/requirements.txt (line 2)) (1.2.0) Requirement already satisfied: packaging in /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/envs/latest/lib/python3.7/site-packages (from sphinx->sphinx-rtd-theme==0.4.3->-r docs/requirements.txt (line 2)) (20.1) Requirement already satisfied: babel!=2.0,>=1.3 in /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/envs/latest/lib/python3.7/site-packages (from sphinx->sphinx-rtd-theme==0.4.3->-r docs/requirements.txt (line 2)) (2.8.0) Requirement already satisfied: Pygments>=2.0 in /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/envs/latest/lib/python3.7/site-packages (from sphinx->sphinx-rtd-theme==0.4.3->-r docs/requirements.txt (line 2)) (2.3.1) Requirement already satisfied: snowballstemmer>=1.1 in /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/envs/latest/lib/python3.7/site-packages (from sphinx->sphinx-rtd-theme==0.4.3->-r docs/requirements.txt (line 2)) (2.0.0) Requirement already satisfied: sphinxcontrib-websupport in /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/envs/latest/lib/python3.7/site-packages (from sphinx->sphinx-rtd-theme==0.4.3->-r docs/requirements.txt (line 2)) (1.1.2) Requirement already satisfied: alabaster<0.8,>=0.7 in /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/envs/latest/lib/python3.7/site-packages (from sphinx->sphinx-rtd-theme==0.4.3->-r docs/requirements.txt (line 2)) (0.7.12) Requirement already satisfied: six>=1.5 in /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/envs/latest/lib/python3.7/site-packages (from sphinx->sphinx-rtd-theme==0.4.3->-r docs/requirements.txt (line 2)) (1.14.0) Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/envs/latest/lib/python3.7/site-packages (from sphinx->sphinx-rtd-theme==0.4.3->-r docs/requirements.txt (line 2)) (41.0.1) Requirement already satisfied: Jinja2>=2.3 in /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/envs/latest/lib/python3.7/site-packages (from sphinx->sphinx-rtd-theme==0.4.3->-r docs/requirements.txt (line 2)) (2.11.0) Requirement already satisfied: urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 in /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/envs/latest/lib/python3.7/site-packages (from requests>=2.0.0->sphinx->sphinx-rtd-theme==0.4.3->-r docs/requirements.txt (line 2)) (1.25.8) Requirement already satisfied: chardet<3.1.0,>=3.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/envs/latest/lib/python3.7/site-packages (from requests>=2.0.0->sphinx->sphinx-rtd-theme==0.4.3->-r docs/requirements.txt (line 2)) (3.0.4) Requirement already satisfied: idna<2.9,>=2.5 in /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/envs/latest/lib/python3.7/site-packages (from requests>=2.0.0->sphinx->sphinx-rtd-theme==0.4.3->-r docs/requirements.txt (line 2)) (2.8) Requirement already satisfied: certifi>=2017.4.17 in /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/envs/latest/lib/python3.7/site-packages (from requests>=2.0.0->sphinx->sphinx-rtd-theme==0.4.3->-r docs/requirements.txt (line 2)) (2019.11.28) Requirement already satisfied: pyparsing>=2.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/envs/latest/lib/python3.7/site-packages (from packaging->sphinx->sphinx-rtd-theme==0.4.3->-r docs/requirements.txt (line 2)) (2.4.6) Requirement already satisfied: pytz>=2015.7 in /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/envs/latest/lib/python3.7/site-packages (from babel!=2.0,>=1.3->sphinx->sphinx-rtd-theme==0.4.3->-r docs/requirements.txt (line 2)) (2019.3) Requirement already satisfied: MarkupSafe>=0.23 in /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/envs/latest/lib/python3.7/site-packages (from Jinja2>=2.3->sphinx->sphinx-rtd-theme==0.4.3->-r docs/requirements.txt (line 2)) (1.1.1) Installing collected packages: markdown, sphinx-markdown-tables Successfully installed markdown-3.0.1 sphinx-markdown-tables-0.0.12 [rtd-command-info] start-time: 2020-01-29T14:00:32.472996Z, end-time: 2020-01-29T14:00:32.713960Z, duration: 0, exit-code: 0 cat docs/source/conf.py # Configuration file for the Sphinx documentation builder. # # This file only contains a selection of the most common options. For a full # list see the documentation: # http://www.sphinx-doc.org/en/master/config # -- Path setup -------------------------------------------------------------- # If extensions (or modules to document with autodoc) are in another directory, # add these directories to sys.path here. If the directory is relative to the # documentation root, use os.path.abspath to make it absolute, like shown here. # # import os # import sys # sys.path.insert(0, os.path.abspath('.')) # -- Project information ----------------------------------------------------- project = 'Northeastern University Research Computing' copyright = '2019-2020, Northeastern University Research Computing' author = 'Northeastern University Research Computing' # The full version, including alpha/beta/rc tags release = '0.0.1' # -- General configuration --------------------------------------------------- # Add any Sphinx extension module names here, as strings. They can be # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom # ones. extensions = [ 'sphinx_markdown_tables', ] # Add any paths that contain templates here, relative to this directory. templates_path = ['_templates'] # List of patterns, relative to source directory, that match files and # directories to ignore when looking for source files. # This pattern also affects html_static_path and html_extra_path. exclude_patterns = [] # -- Options for HTML output ------------------------------------------------- # The theme to use for HTML and HTML Help pages. See the documentation for # a list of builtin themes. # html_theme = 'sphinx_rtd_theme' #add logo to the upper left in the help system html_logo = 'images/NU_logo_small.png' html_theme_options = { 'logo_only': True } #If true, “(C) Copyright …” is shown in the HTML footer. Default is True. html_show_copyright = True #If true, “Created using Sphinx” is shown in the HTML footer. Default is True. html_show_sphinx = False # Add any paths that contain custom static files (such as style sheets) here, # relative to this directory. They are copied after the builtin static files, # so a file named "default.css" will overwrite the builtin "default.css". html_static_path = ['_static'] master_doc = 'index' #source_suffix = ['.rst'] ########################################################################### # auto-created readthedocs.org specific configuration # ########################################################################### # # The following code was added during an automated build on readthedocs.org # It is auto created and injected for every build. The result is based on the # conf.py.tmpl file found in the readthedocs.org codebase: # https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl # import importlib import sys import os.path from six import string_types from sphinx import version_info # Get suffix for proper linking to GitHub # This is deprecated in Sphinx 1.3+, # as each page can have its own suffix if globals().get('source_suffix', False): if isinstance(source_suffix, string_types): SUFFIX = source_suffix elif isinstance(source_suffix, (list, tuple)): # Sphinx >= 1.3 supports list/tuple to define multiple suffixes SUFFIX = source_suffix[0] elif isinstance(source_suffix, dict): # Sphinx >= 1.8 supports a mapping dictionary for multiple suffixes SUFFIX = list(source_suffix.keys())[0] # make a ``list()`` for py2/py3 compatibility else: # default to .rst SUFFIX = '.rst' else: SUFFIX = '.rst' # Add RTD Static Path. Add to the end because it overwrites previous files. if not 'html_static_path' in globals(): html_static_path = [] if os.path.exists('_static'): html_static_path.append('_static') # Add RTD Theme only if they aren't overriding it already using_rtd_theme = ( ( 'html_theme' in globals() and html_theme in ['default'] and # Allow people to bail with a hack of having an html_style 'html_style' not in globals() ) or 'html_theme' not in globals() ) if using_rtd_theme: theme = importlib.import_module('sphinx_rtd_theme') html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} if 'html_theme_path' in globals(): html_theme_path.append(theme.get_html_theme_path()) else: html_theme_path = [theme.get_html_theme_path()] if globals().get('websupport2_base_url', False): websupport2_base_url = 'https://readthedocs.com/websupport' websupport2_static_url = 'https://media.readthedocs.com/' #Add project information to the template context. context = { 'using_theme': using_rtd_theme, 'html_theme': html_theme, 'current_version': "latest", 'version_slug': "latest", 'MEDIA_URL': "https://media.readthedocs.com/media/", 'STATIC_URL': "https://media.readthedocs.com/", 'PRODUCTION_DOMAIN': "readthedocs.com", 'versions': [ ], 'downloads': [ ("pdf", "//northeastern-university-rc-public-documentation.readthedocs-hosted.com/_/downloads/en/latest/pdf/"), ("html", "//northeastern-university-rc-public-documentation.readthedocs-hosted.com/_/downloads/en/latest/htmlzip/"), ("epub", "//northeastern-university-rc-public-documentation.readthedocs-hosted.com/_/downloads/en/latest/epub/"), ], 'subprojects': [ ], 'slug': 'northeastern-university-rc-public-documentation', 'name': u'rc-public-documentation', 'rtd_language': u'en', 'programming_language': u'words', 'canonical_url': 'https://northeastern-university-rc-public-documentation.readthedocs-hosted.com/en/latest/', 'analytics_code': 'None', 'single_version': False, 'conf_py_path': '/docs/source/', 'api_host': 'https://readthedocs.com', 'proxied_api_host': 'https://readthedocs.com', 'github_user': 'neu-rc-admin', 'github_repo': 'rc-public-documentation', 'github_version': 'master', 'display_github': True, 'bitbucket_user': 'None', 'bitbucket_repo': 'None', 'bitbucket_version': 'master', 'display_bitbucket': False, 'gitlab_user': 'None', 'gitlab_repo': 'None', 'gitlab_version': 'master', 'display_gitlab': False, 'READTHEDOCS': True, 'using_theme': (html_theme == "default"), 'new_theme': (html_theme == "sphinx_rtd_theme"), 'source_suffix': SUFFIX, 'ad_free': False, 'user_analytics_code': '', 'global_analytics_code': 'UA-17997319-2', 'commit': 'df45d3ef', } if 'html_context' in globals(): html_context.update(context) else: html_context = context # Add custom RTD extension if 'extensions' in globals(): # Insert at the beginning because it can interfere # with other extensions. # See https://github.com/rtfd/readthedocs.org/pull/4054 extensions.insert(0, "readthedocs_ext.readthedocs") else: extensions = ["readthedocs_ext.readthedocs"] # Add External version warning banner to the external version documentation if 'branch' == 'external': extensions.insert(1, "readthedocs_ext.external_version_warning") project_language = 'en' # User's Sphinx configurations language_user = globals().get('language', None) latex_engine_user = globals().get('latex_engine', None) latex_elements_user = globals().get('latex_elements', None) # Remove this once xindy gets installed in Docker image and XINDYOPS # env variable is supported # https://github.com/rtfd/readthedocs-docker-images/pull/98 latex_use_xindy = False chinese = any([ language_user in ('zh_CN', 'zh_TW'), project_language in ('zh_CN', 'zh_TW'), ]) japanese = any([ language_user == 'ja', project_language == 'ja', ]) if chinese: latex_engine = latex_engine_user or 'xelatex' latex_elements_rtd = { 'preamble': '\\usepackage[UTF8]{ctex}\n', } latex_elements = latex_elements_user or latex_elements_rtd elif japanese: latex_engine = latex_engine_user or 'platex' [rtd-command-info] start-time: 2020-01-29T14:00:32.791044Z, end-time: 2020-01-29T14:00:34.395033Z, duration: 1, exit-code: 0 python sphinx-build -T -E -b readthedocs -d _build/doctrees-readthedocs -D language=en . _build/html Running Sphinx v1.8.5 loading translations [en]... done making output directory... building [mo]: targets for 0 po files that are out of date building [readthedocs]: targets for 11 source files that are out of date updating environment: 11 added, 0 changed, 0 removed reading sources... [ 9%] get_started/first-tasks reading sources... [ 18%] index reading sources... [ 27%] using-discovery/modules reading sources... [ 36%] using-discovery/slurmexamples reading sources... [ 45%] using-discovery/transferringdata reading sources... [ 54%] using-discovery/usingslurm reading sources... [ 63%] using-ood/fileexplore reading sources... [ 72%] using-ood/interactiveapps reading sources... [ 81%] using-ood/introduction reading sources... [ 90%] welcome/gettinghelp reading sources... [100%] welcome/welcome looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 9%] get_started/first-tasks writing output... [ 18%] index writing output... [ 27%] using-discovery/modules writing output... [ 36%] using-discovery/slurmexamples writing output... [ 45%] using-discovery/transferringdata writing output... [ 54%] using-discovery/usingslurm writing output... [ 63%] using-ood/fileexplore writing output... [ 72%] using-ood/interactiveapps writing output... [ 81%] using-ood/introduction writing output... [ 90%] welcome/gettinghelp writing output... [100%] welcome/welcome generating indices... genindex writing additional pages... search copying static files... WARNING: html_static_path entry '/home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/checkouts/latest/docs/source/_static' does not exist done copying readthedocs static files... done copying searchtools... done copying extra files... done dumping search index in English (code: en) ... done dumping object inventory... done build succeeded, 1 warning. The HTML pages are in _build/html. [rtd-command-info] start-time: 2020-01-29T14:00:34.511722Z, end-time: 2020-01-29T14:00:36.272596Z, duration: 1, exit-code: 0 python sphinx-build -T -b readthedocssinglehtmllocalmedia -d _build/doctrees-readthedocssinglehtmllocalmedia -D language=en . _build/localmedia Running Sphinx v1.8.5 loading translations [en]... done making output directory... building [mo]: targets for 0 po files that are out of date building [readthedocssinglehtmllocalmedia]: all documents updating environment: 11 added, 0 changed, 0 removed reading sources... [ 9%] get_started/first-tasks reading sources... [ 18%] index reading sources... [ 27%] using-discovery/modules reading sources... [ 36%] using-discovery/slurmexamples reading sources... [ 45%] using-discovery/transferringdata reading sources... [ 54%] using-discovery/usingslurm reading sources... [ 63%] using-ood/fileexplore reading sources... [ 72%] using-ood/interactiveapps reading sources... [ 81%] using-ood/introduction reading sources... [ 90%] welcome/gettinghelp reading sources... [100%] welcome/welcome looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done assembling single document... welcome/welcome welcome/gettinghelp get_started/first-tasks using-discovery/modules using-discovery/transferringdata using-discovery/usingslurm using-discovery/slurmexamples using-ood/introduction using-ood/fileexplore using-ood/interactiveapps writing... done writing additional files... copying static files... WARNING: html_static_path entry '/home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/checkouts/latest/docs/source/_static' does not exist done copying readthedocs static files... done copying extra files... done dumping object inventory... done build succeeded, 1 warning. The HTML page is in _build/localmedia. [rtd-command-info] start-time: 2020-01-29T14:00:36.434701Z, end-time: 2020-01-29T14:00:37.781775Z, duration: 1, exit-code: 0 python sphinx-build -b latex -D language=en -d _build/doctrees . _build/latex Running Sphinx v1.8.5 loading translations [en]... done making output directory... building [mo]: targets for 0 po files that are out of date building [latex]: all documents updating environment: 11 added, 0 changed, 0 removed reading sources... [ 9%] get_started/first-tasks reading sources... [ 18%] index reading sources... [ 27%] using-discovery/modules reading sources... [ 36%] using-discovery/slurmexamples reading sources... [ 45%] using-discovery/transferringdata reading sources... [ 54%] using-discovery/usingslurm reading sources... [ 63%] using-ood/fileexplore reading sources... [ 72%] using-ood/interactiveapps reading sources... [ 81%] using-ood/introduction reading sources... [ 90%] welcome/gettinghelp reading sources... [100%] welcome/welcome looking for now-outdated files... none found pickling environment... done checking consistency... done processing NortheasternUniversityResearchComputing.tex...index welcome/welcome welcome/gettinghelp get_started/first-tasks using-discovery/modules using-discovery/transferringdata using-discovery/usingslurm using-discovery/slurmexamples using-ood/introduction using-ood/fileexplore using-ood/interactiveapps resolving references... writing... done copying TeX support files... done build succeeded. The LaTeX files are in _build/latex. Run 'make' in that directory to run these through (pdf)latex (use `make latexpdf' here to do that automatically). [rtd-command-info] start-time: 2020-01-29T14:00:38.125845Z, end-time: 2020-01-29T14:00:38.369117Z, duration: 0, exit-code: 0 cat latexmkrc $latex = 'latex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $pdflatex = 'pdflatex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $lualatex = 'lualatex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $xelatex = 'xelatex --no-pdf ' . $ENV{'LATEXOPTS'} . ' %O %S'; $makeindex = 'makeindex -s python.ist %O -o %D %S'; add_cus_dep( "glo", "gls", 0, "makeglo" ); sub makeglo { return system( "makeindex -s gglo.ist -o '$_[0].gls' '$_[0].glo'" ); } [rtd-command-info] start-time: 2020-01-29T14:00:38.451695Z, end-time: 2020-01-29T14:00:40.411530Z, duration: 1, exit-code: 0 latexmk -r latexmkrc -pdf -f -dvi- -ps- -jobname=northeastern-university-rc-public-documentation -interaction=nonstopmode Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 1, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 2, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 3, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 4, chunk 1. Subroutine makeglo redefined at (eval 11) line 7, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 1, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 2, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 3, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 4, chunk 1. Latexmk: This is Latexmk, John Collins, 1 January 2015, version: 4.41. File::Glob::glob() will disappear in perl 5.30. Use File::Glob::bsd_glob() instead. at /usr/bin/latexmk line 7482. Rule 'pdflatex': Rules & subrules not known to be previously run: pdflatex Rule 'pdflatex': The following rules & subrules became out-of-date: 'pdflatex' ------------ Run number 1 of rule 'pdflatex' ------------ ------------ Running 'pdflatex -interaction=nonstopmode -recorder --jobname="northeastern-university-rc-public-documentation" "NortheasternUniversityResearchComputing.tex"' ------------ Latexmk: applying rule 'pdflatex'... This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./NortheasternUniversityResearchComputing.tex LaTeX2e <2017-04-15> Babel <3.18> and hyphenation patterns for 84 language(s) loaded. (./sphinxmanual.cls Document Class: sphinxmanual 2018/12/22 v1.8.3 Document class (Sphinx manual) (/usr/share/texlive/texmf-dist/tex/latex/base/report.cls Document Class: report 2014/09/29 v1.4h Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo))) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/ot1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/omsenc.dfu))) (/usr/share/texlive/texmf-dist/tex/latex/cmap/cmap.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def)<>) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty For additional information on amsmath, use the `?' option. (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty)) (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty (/usr/share/texlive/texmf-dist/tex/generic/babel/switch.def) (/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.def (/usr/share/texlive/texmf-dist/tex/generic/babel/txtbabel.def)))) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) (/usr/share/texlive/texmf-dist/tex/latex/fncychap/fncychap.sty) (./sphinx.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.def (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.dfu))) (/usr/share/texlive/texmf-dist/tex/latex/titlesec/titlesec.sty) (/usr/share/texlive/texmf-dist/tex/latex/tabulary/tabulary.sty (/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty)) (/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty) (/usr/share/texlive/texmf-dist/tex/latex/varwidth/varwidth.sty) (./sphinxmulticell.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty) (/usr/share/texlive/texmf-dist/tex/latex/framed/framed.sty) (/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty Style option: `fancyvrb' v2.7a, with DG/SPQR fixes, and firstline=lastline fix <2008/02/07> (tvz)) (./footnotehyper-sphinx.sty) (/usr/share/texlive/texmf-dist/tex/latex/float/float.sty) (/usr/share/texlive/texmf-dist/tex/latex/wrapfig/wrapfig.sty) (/usr/share/texlive/texmf-dist/tex/latex/parskip/parskip.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/upquote/upquote.sty) (/usr/share/texlive/texmf-dist/tex/latex/capt-of/capt-of.sty) (/usr/share/texlive/texmf-dist/tex/latex/needspace/needspace.sty) (/usr/share/texlive/texmf-dist/tex/latex/carlisle/remreset.sty) (./sphinxhighlight.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/kvsetkeys.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/infwarerr.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/etexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifluatex.sty))))) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifpdf.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifvtex.sty) (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty)) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/hypcap.sty) Writing index file northeastern-university-rc-public-documentation.idx (./northeastern-university-rc-public-documentation.aux) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1ptm.fd) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd)<><><><> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}] [2] [1] [2] Chapter 1. [1] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) LaTeX Warning: Hyper reference `using-discovery/usingslurm:using-slurm' on page 2 undefined on input line 233. LaTeX Warning: Hyper reference `using-discovery/modules:using-module' on page 2 undefined on input line 240. [2] Chapter 2. [3] [4] Chapter 3. [5] [6] LaTeX Warning: Hyper reference `using-discovery/usingslurm:submitting-jobs' on page 7 undefined on input line 390. [7] [8] Chapter 4. Underfull \hbox (badness 10000) in paragraph at lines 429--430 []|\T1/pcr/m/n/10 module Underfull \hbox (badness 10000) in paragraph at lines 434--435 []|\T1/pcr/m/n/10 module Underfull \hbox (badness 10000) in paragraph at lines 439--440 []|\T1/pcr/m/n/10 module Underfull \hbox (badness 10000) in paragraph at lines 439--440 \T1/pcr/m/n/10 show Underfull \hbox (badness 10000) in paragraph at lines 439--440 \T1/pcr/m/n/10 Output written on northeastern-university-rc-public-documentation.pdf (27 pages , 131141 bytes). Transcript written on northeastern-university-rc-public-documentation.log. Latexmk: Index file 'northeastern-university-rc-public-documentation.idx' was written Latexmk: Missing input file: 'northeastern-university-rc-public-documentation.ind' from line 'No file northeastern-university-rc-public-documentation.ind.' Latexmk: References changed. Latexmk: References changed. Latexmk: Log file says output to 'northeastern-university-rc-public-documentation.pdf' Latexmk: Log file says output to 'northeastern-university-rc-public-documentation.pdf' Rule 'makeindex northeastern-university-rc-public-documentation.idx': File changes, etc: Non-existent destination files: 'northeastern-university-rc-public-documentation.ind' ------------ Run number 1 of rule 'makeindex northeastern-university-rc-public-documentation.idx' ------------ ------------ Running 'makeindex -s python.ist -o "northeastern-university-rc-public-documentation.ind" "northeastern-university-rc-public-documentation.idx"' ------------ Latexmk: applying rule 'makeindex northeastern-university-rc-public-documentation.idx'... This is makeindex, version 2.15 [TeX Live 2017] (kpathsea + Thai support). Scanning style file ./python.ist.......done (7 attributes redefined, 0 ignored). Scanning input file northeastern-university-rc-public-documentation.idx...done (0 entries accepted, 0 rejected). Nothing written in northeastern-university-rc-public-documentation.ind. Transcript written in northeastern-university-rc-public-documentation.ilg. Rule 'pdflatex': File changes, etc: Changed files, or newly in use since previous run(s): 'northeastern-university-rc-public-documentation.aux' 'northeastern-university-rc-public-documentation.ind' ------------ Run number 2 of rule 'pdflatex' ------------ ------------ Running 'pdflatex -interaction=nonstopmode -recorder --jobname="northeastern-university-rc-public-documentation" "NortheasternUniversityResearchComputing.tex"' ------------ Latexmk: applying rule 'pdflatex'... This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./NortheasternUniversityResearchComputing.tex LaTeX2e <2017-04-15> Babel <3.18> and hyphenation patterns for 84 language(s) loaded. (./sphinxmanual.cls Document Class: sphinxmanual 2018/12/22 v1.8.3 Document class (Sphinx manual) (/usr/share/texlive/texmf-dist/tex/latex/base/report.cls Document Class: report 2014/09/29 v1.4h Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo))) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/ot1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/omsenc.dfu))) (/usr/share/texlive/texmf-dist/tex/latex/cmap/cmap.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def)<>) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty For additional information on amsmath, use the `?' option. (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty)) (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty (/usr/share/texlive/texmf-dist/tex/generic/babel/switch.def) (/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.def (/usr/share/texlive/texmf-dist/tex/generic/babel/txtbabel.def)))) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) (/usr/share/texlive/texmf-dist/tex/latex/fncychap/fncychap.sty) (./sphinx.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.def (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.dfu))) (/usr/share/texlive/texmf-dist/tex/latex/titlesec/titlesec.sty) (/usr/share/texlive/texmf-dist/tex/latex/tabulary/tabulary.sty (/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty)) (/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty) (/usr/share/texlive/texmf-dist/tex/latex/varwidth/varwidth.sty) (./sphinxmulticell.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty) (/usr/share/texlive/texmf-dist/tex/latex/framed/framed.sty) (/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty Style option: `fancyvrb' v2.7a, with DG/SPQR fixes, and firstline=lastline fix <2008/02/07> (tvz)) (./footnotehyper-sphinx.sty) (/usr/share/texlive/texmf-dist/tex/latex/float/float.sty) (/usr/share/texlive/texmf-dist/tex/latex/wrapfig/wrapfig.sty) (/usr/share/texlive/texmf-dist/tex/latex/parskip/parskip.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/upquote/upquote.sty) (/usr/share/texlive/texmf-dist/tex/latex/capt-of/capt-of.sty) (/usr/share/texlive/texmf-dist/tex/latex/needspace/needspace.sty) (/usr/share/texlive/texmf-dist/tex/latex/carlisle/remreset.sty) (./sphinxhighlight.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/kvsetkeys.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/infwarerr.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/etexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifluatex.sty))))) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifpdf.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifvtex.sty) (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty)) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/hypcap.sty) Writing index file northeastern-university-rc-public-documentation.idx (./northeastern-university-rc-public-documentation.aux) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1ptm.fd) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) (./northeastern-university-rc-public-documentation.out) (./northeastern-university-rc-public-documentation.out) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd)<><><><> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}] [2] (./northeastern-university-rc-public-documentation.toc [1]) [2] Chapter 1. [1] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) [2] Chapter 2. [3] [4] Chapter 3. [5] [6] [7] [8] Chapter 4. Underfull \hbox (badness 10000) in paragraph at lines 429--430 []|\T1/pcr/m/n/10 module Underfull \hbox (badness 10000) in paragraph at lines 434--435 []|\T1/pcr/m/n/10 module Underfull \hbox (badness 10000) in paragraph at lines 439--440 []|\T1/pcr/m/n/10 module Underfull \hbox (badness 10000) in paragraph at lines 439--440 \T1/pcr/m/n/10 show Underfull \hbox (badness 10000) in paragraph at lines 439--440 \T1/pcr/m/n/10 Output written on northeastern-university-rc-public-documentation.pdf (27 pages , 138352 bytes). Transcript written on northeastern-university-rc-public-documentation.log. Latexmk: Index file 'northeastern-university-rc-public-documentation.idx' was written Latexmk: Log file says output to 'northeastern-university-rc-public-documentation.pdf' Latexmk: Log file says output to 'northeastern-university-rc-public-documentation.pdf' Rule 'pdflatex': File changes, etc: Changed files, or newly in use since previous run(s): 'northeastern-university-rc-public-documentation.out' 'northeastern-university-rc-public-documentation.toc' ------------ Run number 3 of rule 'pdflatex' ------------ ------------ Running 'pdflatex -interaction=nonstopmode -recorder --jobname="northeastern-university-rc-public-documentation" "NortheasternUniversityResearchComputing.tex"' ------------ Latexmk: applying rule 'pdflatex'... This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./NortheasternUniversityResearchComputing.tex LaTeX2e <2017-04-15> Babel <3.18> and hyphenation patterns for 84 language(s) loaded. (./sphinxmanual.cls Document Class: sphinxmanual 2018/12/22 v1.8.3 Document class (Sphinx manual) (/usr/share/texlive/texmf-dist/tex/latex/base/report.cls Document Class: report 2014/09/29 v1.4h Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo))) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/ot1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/omsenc.dfu))) (/usr/share/texlive/texmf-dist/tex/latex/cmap/cmap.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def)<>) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty For additional information on amsmath, use the `?' option. (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty)) (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty (/usr/share/texlive/texmf-dist/tex/generic/babel/switch.def) (/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.def (/usr/share/texlive/texmf-dist/tex/generic/babel/txtbabel.def)))) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) (/usr/share/texlive/texmf-dist/tex/latex/fncychap/fncychap.sty) (./sphinx.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.def (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.dfu))) (/usr/share/texlive/texmf-dist/tex/latex/titlesec/titlesec.sty) (/usr/share/texlive/texmf-dist/tex/latex/tabulary/tabulary.sty (/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty)) (/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty) (/usr/share/texlive/texmf-dist/tex/latex/varwidth/varwidth.sty) (./sphinxmulticell.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty) (/usr/share/texlive/texmf-dist/tex/latex/framed/framed.sty) (/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty Style option: `fancyvrb' v2.7a, with DG/SPQR fixes, and firstline=lastline fix <2008/02/07> (tvz)) (./footnotehyper-sphinx.sty) (/usr/share/texlive/texmf-dist/tex/latex/float/float.sty) (/usr/share/texlive/texmf-dist/tex/latex/wrapfig/wrapfig.sty) (/usr/share/texlive/texmf-dist/tex/latex/parskip/parskip.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/upquote/upquote.sty) (/usr/share/texlive/texmf-dist/tex/latex/capt-of/capt-of.sty) (/usr/share/texlive/texmf-dist/tex/latex/needspace/needspace.sty) (/usr/share/texlive/texmf-dist/tex/latex/carlisle/remreset.sty) (./sphinxhighlight.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/kvsetkeys.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/infwarerr.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/etexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifluatex.sty))))) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifpdf.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifvtex.sty) (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty)) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/hypcap.sty) Writing index file northeastern-university-rc-public-documentation.idx (./northeastern-university-rc-public-documentation.aux) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1ptm.fd) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) (./northeastern-university-rc-public-documentation.out) (./northeastern-university-rc-public-documentation.out) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd)<><><><> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}] [2] (./northeastern-university-rc-public-documentation.toc [1]) [2] Chapter 1. [1] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) [2] Chapter 2. [3] [4] Chapter 3. [5] [6] [7] [8] Chapter 4. Underfull \hbox (badness 10000) in paragraph at lines 429--430 []|\T1/pcr/m/n/10 module Underfull \hbox (badness 10000) in paragraph at lines 434--435 []|\T1/pcr/m/n/10 module Underfull \hbox (badness 10000) in paragraph at lines 439--440 []|\T1/pcr/m/n/10 module Underfull \hbox (badness 10000) in paragraph at lines 439--440 \T1/pcr/m/n/10 show Underfull \hbox (badness 10000) in paragraph at lines 439--440 \T1/pcr/m/n/10 Output written on northeastern-university-rc-public-documentation.pdf (27 pages , 138352 bytes). Transcript written on northeastern-university-rc-public-documentation.log. Latexmk: Index file 'northeastern-university-rc-public-documentation.idx' was written Latexmk: Log file says output to 'northeastern-university-rc-public-documentation.pdf' Latexmk: Log file says output to 'northeastern-university-rc-public-documentation.pdf' Latexmk: All targets (northeastern-university-rc-public-documentation.pdf) are up-to-date [rtd-command-info] start-time: 2020-01-29T14:00:40.579822Z, end-time: 2020-01-29T14:00:40.818353Z, duration: 0, exit-code: 0 mv -f /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/checkouts/latest/docs/source/_build/latex/northeastern-university-rc-public-documentation.pdf /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/artifacts/latest/sphinx_pdf/northeastern-university-rc-public-documentation.pdf [rtd-command-info] start-time: 2020-01-29T14:00:40.894280Z, end-time: 2020-01-29T14:00:42.266021Z, duration: 1, exit-code: 0 python sphinx-build -T -b epub -d _build/doctrees-epub -D language=en . _build/epub Running Sphinx v1.8.5 loading translations [en]... done making output directory... building [mo]: targets for 0 po files that are out of date building [epub]: targets for 11 source files that are out of date updating environment: 11 added, 0 changed, 0 removed reading sources... [ 9%] get_started/first-tasks reading sources... [ 18%] index reading sources... [ 27%] using-discovery/modules reading sources... [ 36%] using-discovery/slurmexamples reading sources... [ 45%] using-discovery/transferringdata reading sources... [ 54%] using-discovery/usingslurm reading sources... [ 63%] using-ood/fileexplore reading sources... [ 72%] using-ood/interactiveapps reading sources... [ 81%] using-ood/introduction reading sources... [ 90%] welcome/gettinghelp reading sources... [100%] welcome/welcome looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 9%] get_started/first-tasks writing output... [ 18%] index writing output... [ 27%] using-discovery/modules writing output... [ 36%] using-discovery/slurmexamples writing output... [ 45%] using-discovery/transferringdata writing output... [ 54%] using-discovery/usingslurm writing output... [ 63%] using-ood/fileexplore writing output... [ 72%] using-ood/interactiveapps writing output... [ 81%] using-ood/introduction writing output... [ 90%] welcome/gettinghelp writing output... [100%] welcome/welcome generating indices... genindex writing additional pages... copying static files... WARNING: html_static_path entry '/home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/checkouts/latest/docs/source/_static' does not exist done copying extra files... done WARNING: conf value "version" should not be empty for EPUB3 writing mimetype file... writing META-INF/container.xml file... writing content.opf file... writing nav.xhtml file... writing toc.ncx file... writing NortheasternUniversityResearchComputing.epub file... build succeeded, 2 warnings. The ePub file is in _build/epub. [rtd-command-info] start-time: 2020-01-29T14:00:42.358559Z, end-time: 2020-01-29T14:00:42.605740Z, duration: 0, exit-code: 0 mv -f /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/checkouts/latest/docs/source/_build/epub/NortheasternUniversityResearchComputing.epub /home/docs/checkouts/readthedocs.org/user_builds/northeastern-university-rc-public-documentation/artifacts/latest/sphinx_epub/northeastern-university-rc-public-documentation.epub