Read the Docs build information Build id: 2788059 Project: tiledb-inc-tiledb-py Version: 2153 Commit: 6c94ec79e492e33951aa68a6e1da6995b732eca8 Date: 2025-02-06T17:05:34.856480Z State: finished Success: False [rtd-command-info] start-time: 2025-02-06T17:05:35.973390Z, end-time: 2025-02-06T17:05:36.485141Z, duration: 0, exit-code: 0 git clone --depth 1 https://github.com/TileDB-Inc/TileDB-Py.git . Cloning into '.'... [rtd-command-info] start-time: 2025-02-06T17:05:36.564479Z, end-time: 2025-02-06T17:05:37.556894Z, duration: 0, exit-code: 0 git fetch origin --force --prune --prune-tags --depth 50 pull/2153/head:external-2153 From https://github.com/TileDB-Inc/TileDB-Py * [new ref] refs/pull/2153/head -> external-2153 * [new tag] 0.33.1 -> 0.33.1 * [new tag] 0.33.2 -> 0.33.2 * [new tag] 0.33.3 -> 0.33.3 [rtd-command-info] start-time: 2025-02-06T17:05:37.683876Z, end-time: 2025-02-06T17:05:37.731571Z, duration: 0, exit-code: 0 git checkout --force 6c94ec79e492e33951aa68a6e1da6995b732eca8 Note: switching to '6c94ec79e492e33951aa68a6e1da6995b732eca8'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 6c94ec7 not soma [rtd-command-info] start-time: 2025-02-06T17:05:37.802683Z, end-time: 2025-02-06T17:05:37.854231Z, duration: 0, exit-code: 0 cat .readthedocs.yml # Don't build any extra formats formats: [] # Use RTD config version 2 # https://docs.readthedocs.io/en/stable/config-file/v2.html version: 2 # Set build OS to avoid build failures with old compiler build: os: "ubuntu-22.04" tools: python: "3.12" sphinx: configuration: doc/source/conf.py python: install: - method: pip path: . extra_requirements: - doc [rtd-command-info] start-time: 2025-02-06T17:05:42.458345Z, end-time: 2025-02-06T17:05:42.528612Z, duration: 0, exit-code: 0 asdf global python 3.12.7 [rtd-command-info] start-time: 2025-02-06T17:05:42.895053Z, end-time: 2025-02-06T17:05:43.799485Z, duration: 0, exit-code: 0 python -mvirtualenv $READTHEDOCS_VIRTUALENV_PATH created virtual environment CPython3.12.7.final.0-64 in 641ms creator CPython3Posix(dest=/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/2153, clear=False, no_vcs_ignore=False, global=False) seeder FromAppData(download=False, pip=bundle, setuptools=bundle, wheel=bundle, via=copy, app_data_dir=/home/docs/.local/share/virtualenv) added seed packages: pip==23.1, setuptools==67.6.1, wheel==0.40.0 activators BashActivator,CShellActivator,FishActivator,NushellActivator,PowerShellActivator,PythonActivator [rtd-command-info] start-time: 2025-02-06T17:05:43.864231Z, end-time: 2025-02-06T17:05:53.594164Z, duration: 9, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip setuptools Requirement already satisfied: pip in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/2153/lib/python3.12/site-packages (23.1) Collecting pip Downloading pip-25.0-py3-none-any.whl (1.8 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.8/1.8 MB 11.3 MB/s eta 0:00:00 Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/2153/lib/python3.12/site-packages (67.6.1) Collecting setuptools Downloading setuptools-75.8.0-py3-none-any.whl (1.2 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.2/1.2 MB 24.1 MB/s eta 0:00:00 Installing collected packages: setuptools, pip Attempting uninstall: setuptools Found existing installation: setuptools 67.6.1 Uninstalling setuptools-67.6.1: Successfully uninstalled setuptools-67.6.1 Attempting uninstall: pip Found existing installation: pip 23.1 Uninstalling pip-23.1: Successfully uninstalled pip-23.1 Successfully installed pip-25.0 setuptools-75.8.0 [rtd-command-info] start-time: 2025-02-06T17:05:53.658630Z, end-time: 2025-02-06T17:05:58.405729Z, duration: 4, exit-code: 0 python -m pip install --upgrade --no-cache-dir sphinx Collecting sphinx Downloading sphinx-8.1.3-py3-none-any.whl.metadata (6.4 kB) Collecting sphinxcontrib-applehelp>=1.0.7 (from 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charset_normalizer-3.4.1-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (35 kB) Collecting idna<4,>=2.5 (from requests>=2.30.0->sphinx) Downloading idna-3.10-py3-none-any.whl.metadata (10 kB) Collecting urllib3<3,>=1.21.1 (from requests>=2.30.0->sphinx) Downloading urllib3-2.3.0-py3-none-any.whl.metadata (6.5 kB) Collecting certifi>=2017.4.17 (from requests>=2.30.0->sphinx) Downloading certifi-2025.1.31-py3-none-any.whl.metadata (2.5 kB) Downloading sphinx-8.1.3-py3-none-any.whl (3.5 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 3.5/3.5 MB 116.4 MB/s eta 0:00:00 Downloading alabaster-1.0.0-py3-none-any.whl (13 kB) Downloading babel-2.17.0-py3-none-any.whl (10.2 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 10.2/10.2 MB 201.5 MB/s eta 0:00:00 Downloading docutils-0.21.2-py3-none-any.whl (587 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 587.4/587.4 kB 750.1 MB/s eta 0:00:00 Downloading imagesize-1.4.1-py2.py3-none-any.whl (8.8 kB) Downloading jinja2-3.1.5-py3-none-any.whl (134 kB) Downloading packaging-24.2-py3-none-any.whl (65 kB) Downloading pygments-2.19.1-py3-none-any.whl (1.2 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.2/1.2 MB 798.7 MB/s eta 0:00:00 Downloading requests-2.32.3-py3-none-any.whl (64 kB) Downloading snowballstemmer-2.2.0-py2.py3-none-any.whl (93 kB) Downloading sphinxcontrib_applehelp-2.0.0-py3-none-any.whl (119 kB) Downloading sphinxcontrib_devhelp-2.0.0-py3-none-any.whl (82 kB) Downloading sphinxcontrib_htmlhelp-2.1.0-py3-none-any.whl (98 kB) Downloading sphinxcontrib_jsmath-1.0.1-py2.py3-none-any.whl (5.1 kB) Downloading sphinxcontrib_qthelp-2.0.0-py3-none-any.whl (88 kB) Downloading sphinxcontrib_serializinghtml-2.0.0-py3-none-any.whl (92 kB) Downloading certifi-2025.1.31-py3-none-any.whl (166 kB) Downloading charset_normalizer-3.4.1-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (145 kB) Downloading idna-3.10-py3-none-any.whl (70 kB) Downloading MarkupSafe-3.0.2-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (23 kB) Downloading urllib3-2.3.0-py3-none-any.whl (128 kB) Installing collected packages: snowballstemmer, urllib3, sphinxcontrib-serializinghtml, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, Pygments, packaging, MarkupSafe, imagesize, idna, docutils, charset-normalizer, certifi, babel, alabaster, requests, Jinja2, sphinx Successfully installed Jinja2-3.1.5 MarkupSafe-3.0.2 Pygments-2.19.1 alabaster-1.0.0 babel-2.17.0 certifi-2025.1.31 charset-normalizer-3.4.1 docutils-0.21.2 idna-3.10 imagesize-1.4.1 packaging-24.2 requests-2.32.3 snowballstemmer-2.2.0 sphinx-8.1.3 sphinxcontrib-applehelp-2.0.0 sphinxcontrib-devhelp-2.0.0 sphinxcontrib-htmlhelp-2.1.0 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-qthelp-2.0.0 sphinxcontrib-serializinghtml-2.0.0 urllib3-2.3.0 [rtd-command-info] start-time: 2025-02-06T17:05:58.481900Z, end-time: 2025-02-06T17:08:14.330302Z, duration: 135, exit-code: 0 python -m pip install --upgrade --upgrade-strategy only-if-needed --no-cache-dir .[doc] Processing /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/2153 Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Installing backend dependencies: started Installing backend dependencies: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Collecting numpy>=1.25 (from tiledb==0.33.4.dev26+g6c94ec7) Downloading numpy-2.2.2-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (62 kB) Requirement already satisfied: packaging in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/2153/lib/python3.12/site-packages (from 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Sphinx==8.1.3->tiledb==0.33.4.dev26+g6c94ec7) (2.32.3) Collecting sphinxcontrib-jquery<5,>=4 (from sphinx-rtd-theme==3.0.2->tiledb==0.33.4.dev26+g6c94ec7) Downloading sphinxcontrib_jquery-4.1-py2.py3-none-any.whl.metadata (2.6 kB) Requirement already satisfied: charset-normalizer<4,>=2 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/2153/lib/python3.12/site-packages (from requests>=2.30.0->Sphinx==8.1.3->tiledb==0.33.4.dev26+g6c94ec7) (3.4.1) Requirement already satisfied: idna<4,>=2.5 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/2153/lib/python3.12/site-packages (from requests>=2.30.0->Sphinx==8.1.3->tiledb==0.33.4.dev26+g6c94ec7) (3.10) Requirement already satisfied: urllib3<3,>=1.21.1 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/2153/lib/python3.12/site-packages (from requests>=2.30.0->Sphinx==8.1.3->tiledb==0.33.4.dev26+g6c94ec7) (2.3.0) Requirement already satisfied: certifi>=2017.4.17 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/2153/lib/python3.12/site-packages (from requests>=2.30.0->Sphinx==8.1.3->tiledb==0.33.4.dev26+g6c94ec7) (2025.1.31) Downloading sphinx_rtd_theme-3.0.2-py2.py3-none-any.whl (7.7 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 7.7/7.7 MB 123.8 MB/s eta 0:00:00 Downloading numpy-2.2.2-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (16.1 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 16.1/16.1 MB 171.0 MB/s eta 0:00:00 Downloading breathe-4.35.0-py3-none-any.whl (92 kB) Downloading sphinxcontrib_jquery-4.1-py2.py3-none-any.whl (121 kB) Building wheels for collected packages: tiledb Building wheel for tiledb (pyproject.toml): started Building wheel for tiledb (pyproject.toml): still running... Building wheel for tiledb (pyproject.toml): still running... Building wheel for tiledb (pyproject.toml): finished with status 'done' Created wheel for tiledb: filename=tiledb-0.33.4.dev26+g6c94ec7-cp312-cp312-linux_x86_64.whl size=16810625 sha256=5fe46b93357beddf8db9a4f77d44a62cbfbc6002b90d899f7b90c1048be8c2dc Stored in directory: /tmp/pip-ephem-wheel-cache-tb4ve3uy/wheels/d6/0b/7a/e84e31ad1f98024a5b3441df2c2d50946d7935a3a3ae886968 Successfully built tiledb Installing collected packages: numpy, tiledb, sphinxcontrib-jquery, breathe, sphinx-rtd-theme Successfully installed breathe-4.35.0 numpy-2.2.2 sphinx-rtd-theme-3.0.2 sphinxcontrib-jquery-4.1 tiledb-0.33.4.dev26+g6c94ec7 [rtd-command-info] start-time: 2025-02-06T17:08:14.533574Z, end-time: 2025-02-06T17:08:14.583202Z, duration: 0, exit-code: 0 cat doc/source/conf.py #!/usr/bin/env python3 # -*- coding: utf-8 -*- # # -- Imports configuration ------------------------------------------------- import os import sys from os.path import abspath, dirname, join from importlib.metadata import version as get_version sys.path.insert(0, abspath(join(dirname(__file__)))) # -- ReadTheDocs configuration --------------------------------------------- # Special handling on ReadTheDocs builds. # Some of this code is from https://github.com/robotpy/robotpy-docs/blob/master/conf.py readthedocs = os.environ.get("READTHEDOCS", None) == "True" rtd_version = os.environ.get("READTHEDOCS_VERSION", "latest") rtd_version = rtd_version if rtd_version in ["stable", "latest"] else "stable" # -- Project information ----------------------------------------------------- project = "TileDB-Py" copyright = "2025, TileDB, Inc." author = "TileDB, Inc." # The full version, including alpha/beta/rc tags release: str = get_version("tiledb") # The short X.Y version version: str = ".".join(release.split(".")[:2]) # -- General configuration --------------------------------------------------- # If your documentation needs a minimal Sphinx version, state it here. # # needs_sphinx = '1.0' # Add any Sphinx extension module names here, as strings. They can be # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom # ones. extensions = [ "sphinx.ext.autodoc", "sphinx.ext.doctest", "sphinx.ext.intersphinx", "sphinx.ext.napoleon", "sphinx.ext.autosummary", "nbsphinx", "sphinxcontrib.jquery", ] autosummary_generate = True # Mapping for linking between RTD subprojects. if readthedocs: intersphinx_mapping = { "tiledb": ( "https://tiledb-inc-tiledb.readthedocs-hosted.com/en/%s/" % rtd_version, None, ), "tiledb-py": ( "https://tiledb-inc-tiledb.readthedocs-hosted.com/projects/python-api/en/%s/" % rtd_version, None, ), "python": ( "https://docs.python.org/3", None, ), } napoleon_custom_sections = ["Lifecycle"] # Add any paths that contain templates here, relative to this directory. templates_path = ["_templates"] # The suffix(es) of source filenames. # You can specify multiple suffix as a list of string: # # source_suffix = ['.rst', '.md'] source_suffix = ".rst" # The master toctree document. master_doc = "index" # The language for content autogenerated by Sphinx. Refer to documentation # for a list of supported languages. # # This is also used if you do content translation via gettext catalogs. # Usually you set "language" from the command line for these cases. language = "en" # List of patterns, relative to source directory, that match files and # directories to ignore when looking for source files. # This pattern also affects html_static_path and html_extra_path . exclude_patterns = ["_build", "Thumbs.db", ".DS_Store"] # The name of the Pygments (syntax highlighting) style to use. pygments_style = "friendly" # -- Options for HTML output ------------------------------------------------- html_static_path = ["_static"] html_logo = "_static/tiledb-logo_color_no_margin_@4x.png" html_favicon = "_static/favicon.ico" # if readthedocs: # html_theme = "default" # else: # import sphinx_rtd_theme # # html_theme = "sphinx_rtd_theme" # html_theme_path = [sphinx_rtd_theme.get_html_theme_path()] import sphinx_rtd_theme html_theme = "sphinx_rtd_theme" html_theme_path = [sphinx_rtd_theme.get_html_theme_path()] # -- Options for HTMLHelp output --------------------------------------------- # Output file base name for HTML help builder. htmlhelp_basename = "TileDB-Pydoc" # -- Options for LaTeX output ------------------------------------------------ latex_elements = { # The paper size ('letterpaper' or 'a4paper'). # # 'papersize': 'letterpaper', # The font size ('10pt', '11pt' or '12pt'). # # 'pointsize': '10pt', # Additional stuff for the LaTeX preamble. # # 'preamble': '', # Latex figure (float) alignment # # 'figure_align': 'htbp', } # Grouping the document tree into LaTeX files. List of tuples # (source start file, target name, title, # author, documentclass [howto, manual, or own class]). latex_documents = [ (master_doc, "TileDB-Py.tex", "TileDB-Py Documentation", "TileDB, Inc.", "manual") ] # -- Options for manual page output ------------------------------------------ # One entry per manual page. List of tuples # (source start file, name, description, authors, manual section). man_pages = [(master_doc, "tiledb-py", "TileDB-Py Documentation", [author], 1)] # -- Options for Texinfo output ---------------------------------------------- # Grouping the document tree into Texinfo files. List of tuples # (source start file, target name, title, author, # dir menu entry, description, category) texinfo_documents = [ ( master_doc, "TileDB-Py", "TileDB-Py Documentation", author, "TileDB-Py", "One line description of project.", "Miscellaneous", ) ] # -- Custom Document processing ---------------------------------------------- # Generate the sidebar automatically so that it is identical across all subprojects. # This (and gensidebar.py) from https://github.com/robotpy/robotpy-docs import gensidebar gensidebar.generate_sidebar( {"on_rtd": readthedocs, "rtd_version": rtd_version}, "tiledb-py" ) # -- Custom setup ----------------------------------------------------------- def setup(app): app.add_css_file("custom.css") [rtd-command-info] start-time: 2025-02-06T17:08:14.654065Z, end-time: 2025-02-06T17:08:15.170287Z, duration: 0, exit-code: 2 python -m sphinx -T -b html -d _build/doctrees -D language=en . $READTHEDOCS_OUTPUT/html Running Sphinx v8.1.3 WARNING: Calling get_html_theme_path is deprecated. If you are calling it to define html_theme_path, you are safe to remove that code. loading translations [en]... done Traceback (most recent call last): File "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/2153/lib/python3.12/site-packages/sphinx/registry.py", line 453, in load_extension mod = import_module(extname) ^^^^^^^^^^^^^^^^^^^^^^ File "/home/docs/.asdf/installs/python/3.12.7/lib/python3.12/importlib/__init__.py", line 90, in import_module return _bootstrap._gcd_import(name[level:], package, level) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "", line 1387, in _gcd_import File "", line 1360, in _find_and_load File "", line 1324, in _find_and_load_unlocked ModuleNotFoundError: No module named 'nbsphinx' The above exception was the direct cause of the following exception: Traceback (most recent call last): File "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/2153/lib/python3.12/site-packages/sphinx/cmd/build.py", line 496, in build_main app = Sphinx( ^^^^^^^ File "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/2153/lib/python3.12/site-packages/sphinx/application.py", line 256, in __init__ self.setup_extension(extension) File "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/2153/lib/python3.12/site-packages/sphinx/application.py", line 437, in setup_extension self.registry.load_extension(self, extname) File "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/2153/lib/python3.12/site-packages/sphinx/registry.py", line 456, in load_extension raise ExtensionError(__('Could not import extension %s') % extname, sphinx.errors.ExtensionError: Could not import extension nbsphinx (exception: No module named 'nbsphinx') Extension error: Could not import extension nbsphinx (exception: No module named 'nbsphinx')