Read the Docs build information Build id: 274406 Project: cyverse-leptin-rna-seq-lesson-dev Version: latest Commit: 3315ba381deb487583d76db7411ebd062473a82f Date: 2020-01-08T20:46:42.125994Z State: finished Success: False [rtd-command-info] start-time: 2020-01-08T21:00:59.130176Z, end-time: 2020-01-08T21:00:59.977429Z, duration: 0, exit-code: 0 git clone --no-single-branch --depth 50 https://github.com/JasonJWilliamsNY/leptin-rna-seq-lesson-dev.git . Cloning into '.'... [rtd-command-info] start-time: 2020-01-08T21:01:00.453088Z, end-time: 2020-01-08T21:01:00.652421Z, duration: 0, exit-code: 0 git checkout --force origin/master Note: checking out 'origin/master'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at 3315ba3 add requirements file [rtd-command-info] start-time: 2020-01-08T21:01:00.734058Z, end-time: 2020-01-08T21:01:00.745809Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2020-01-08T21:01:02.078012Z, end-time: 2020-01-08T21:01:07.522663Z, duration: 5, exit-code: 0 python3.7 -mvirtualenv --no-site-packages --no-download Using base prefix '/home/docs/.pyenv/versions/3.7.3' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-leptin-rna-seq-lesson-dev/envs/latest/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-leptin-rna-seq-lesson-dev/envs/latest/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2020-01-08T21:01:08.194024Z, end-time: 2020-01-08T21:01:10.632283Z, duration: 2, exit-code: 0 python -m pip install --upgrade --cache-dir /home/docs/checkouts/readthedocs.org/user_builds/cyverse-leptin-rna-seq-lesson-dev/.cache/pip pip Collecting pip Downloading https://files.pythonhosted.org/packages/00/b6/9cfa56b4081ad13874b0c6f96af8ce16cfbc1cb06bedf8e9164ce5551ec1/pip-19.3.1-py2.py3-none-any.whl (1.4MB) Installing collected packages: pip Found existing installation: pip 19.1.1 Uninstalling pip-19.1.1: Successfully uninstalled pip-19.1.1 Successfully installed pip-19.3.1 [rtd-command-info] start-time: 2020-01-08T21:01:10.725661Z, end-time: 2020-01-08T21:01:20.729670Z, duration: 10, exit-code: 0 python -m pip install --upgrade --cache-dir /home/docs/checkouts/readthedocs.org/user_builds/cyverse-leptin-rna-seq-lesson-dev/.cache/pip Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 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https://files.pythonhosted.org/packages/98/7b/ff284bd8c80654e471b769062a9b43cc5d03e7a615048d96f4619df8d420/MarkupSafe-1.1.1-cp37-cp37m-manylinux1_x86_64.whl Collecting pyparsing>=2.0.2 Downloading https://files.pythonhosted.org/packages/5d/bc/1e58593167fade7b544bfe9502a26dc860940a79ab306e651e7f13be68c2/pyparsing-2.4.6-py2.py3-none-any.whl (67kB) Building wheels for collected packages: mock, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-cp37-none-any.whl size=23754 sha256=e82fd22bd8e682fe1660ea19073503bd906f63ebf47eadd8fd3f61066e4d62f3 Stored in directory: /home/docs/checkouts/readthedocs.org/user_builds/cyverse-leptin-rna-seq-lesson-dev/.cache/pip/wheels/7e/72/92/744b532c779242b57aab4bcba80c312b30c069bbd60025e7e6 Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: 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snowballstemmer-2.0.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-websupport-1.1.2 urllib3-1.25.7 [rtd-command-info] start-time: 2020-01-08T21:01:21.303981Z, end-time: 2020-01-08T21:01:21.966063Z, duration: 0, exit-code: 1 python -m pip install --exists-action=w --cache-dir /home/docs/checkouts/readthedocs.org/user_builds/cyverse-leptin-rna-seq-lesson-dev/.cache/pip -r misc/requirements.txt ERROR: Invalid requirement: 'pip install' (from line 1 of misc/requirements.txt)