Read the Docs build information Build id: 270617 Project: iiasa-energy-program-message-ix Version: latest Commit: 40ad4b5ccbd1de448c3b6adaa8a7b9eda9c28f9f Date: 2019-12-19T11:03:54.241830Z State: finished Success: True [rtd-command-info] start-time: 2019-12-19T11:03:54.710698Z, end-time: 2019-12-19T11:03:55.468376Z, duration: 0, exit-code: 0 git clone --no-single-branch --depth 50 https://github.com/iiasa/message_ix.git . Cloning into '.'... [rtd-command-info] start-time: 2019-12-19T11:03:55.724204Z, end-time: 2019-12-19T11:03:55.800635Z, duration: 0, exit-code: 0 git checkout --force origin/master Note: checking out 'origin/master'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at 40ad4b5 Merge pull request #291 from francescolovat/installation_including_--editable [rtd-command-info] start-time: 2019-12-19T11:03:55.974446Z, end-time: 2019-12-19T11:03:55.990766Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2019-12-19T11:03:57.076492Z, end-time: 2019-12-19T11:04:01.973812Z, duration: 4, exit-code: 0 python3.6 -mvirtualenv --no-site-packages --no-download Using base prefix '/home/docs/.pyenv/versions/3.6.8' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/bin/python3.6 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2019-12-19T11:04:02.081946Z, end-time: 2019-12-19T11:04:04.782481Z, duration: 2, exit-code: 0 python -m pip install --upgrade --cache-dir /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/.cache/pip pip Collecting pip Using cached https://files.pythonhosted.org/packages/00/b6/9cfa56b4081ad13874b0c6f96af8ce16cfbc1cb06bedf8e9164ce5551ec1/pip-19.3.1-py2.py3-none-any.whl Installing collected packages: pip Found existing installation: pip 19.1.1 Uninstalling pip-19.1.1: Successfully uninstalled pip-19.1.1 Successfully installed pip-19.3.1 [rtd-command-info] start-time: 2019-12-19T11:04:04.862233Z, end-time: 2019-12-19T11:04:14.546275Z, duration: 9, exit-code: 0 python -m pip install --upgrade --cache-dir /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/.cache/pip Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 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future-0.18.2 idna-2.8 imagesize-1.1.0 mock-1.0.1 packaging-19.2 pillow-5.4.1 pyparsing-2.4.5 pytz-2019.3 readthedocs-sphinx-ext-1.0.1 recommonmark-0.5.0 requests-2.22.0 six-1.13.0 snowballstemmer-2.0.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-websupport-1.1.2 urllib3-1.25.7 [rtd-command-info] start-time: 2019-12-19T11:04:14.635965Z, end-time: 2019-12-19T11:04:44.830850Z, duration: 30, exit-code: 0 python -m pip install --exists-action=w --cache-dir /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/.cache/pip -r doc/requirements.txt Collecting ixmp Cloning git://github.com/iiasa/ixmp.git to /tmp/pip-install-uichc8xq/ixmp Running command git clone -q git://github.com/iiasa/ixmp.git /tmp/pip-install-uichc8xq/ixmp Processing /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/.cache/pip/wheels/51/30/d1/92a39ba40f21cb70e53f8af96eb98f002a781843c065406500/numpydoc-0.9.1-cp36-none-any.whl Collecting pyam-iamc Cloning 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2)) (2019.3) Requirement already satisfied: MarkupSafe>=0.23 in /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.6/site-packages (from Jinja2>=2.3->numpydoc->-r doc/requirements.txt (line 4)) (1.1.1) Requirement already satisfied: idna<2.9,>=2.5 in /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.6/site-packages (from requests->pyam-iamc->-r doc/requirements.txt (line 8)) (2.8) Requirement already satisfied: certifi>=2017.4.17 in /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.6/site-packages (from requests->pyam-iamc->-r doc/requirements.txt (line 8)) (2019.11.28) Requirement already satisfied: chardet<3.1.0,>=3.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.6/site-packages (from requests->pyam-iamc->-r doc/requirements.txt (line 8)) (3.0.4) Requirement already satisfied: urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 in /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.6/site-packages (from requests->pyam-iamc->-r doc/requirements.txt (line 8)) (1.25.7) Collecting kiwisolver>=1.0.1 Using cached https://files.pythonhosted.org/packages/f8/a1/5742b56282449b1c0968197f63eae486eca2c35dcd334bab75ad524e0de1/kiwisolver-1.1.0-cp36-cp36m-manylinux1_x86_64.whl Requirement already satisfied: pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.1 in /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.6/site-packages (from matplotlib<=3.0.2->pyam-iamc->-r doc/requirements.txt (line 8)) (2.4.5) Collecting cycler>=0.10 Using cached https://files.pythonhosted.org/packages/f7/d2/e07d3ebb2bd7af696440ce7e754c59dd546ffe1bbe732c8ab68b9c834e61/cycler-0.10.0-py2.py3-none-any.whl Collecting scipy>=0.14.0 Using cached https://files.pythonhosted.org/packages/f0/7a/579f4659bb488f19f6b458a003b36b86bacaedcb28530f8d25cb153fc5cd/scipy-1.4.0-cp36-cp36m-manylinux1_x86_64.whl Collecting latexcodec>=1.0.4 Using cached https://files.pythonhosted.org/packages/c1/3b/3098d07abf8eb39d6714466d5ff41cdee30356f35c3e796b760fbb55e2fd/latexcodec-1.0.7-py2.py3-none-any.whl Building wheels for collected packages: ixmp, pyam-iamc Building wheel for ixmp (setup.py): started Building wheel for ixmp (setup.py): finished with status 'done' Created wheel for ixmp: filename=ixmp-0.2.0.post0.dev272-cp36-none-any.whl size=16563290 sha256=3aff53ea7e3145ff2f844d511eef99c73d6ed2117affba71da3953b86187f610 Stored in directory: /tmp/pip-ephem-wheel-cache-08c9xo3k/wheels/fe/7b/55/b4a297ae702daac0e4ffcb8dae86a493f9af3bf71518ee9e00 Building wheel for pyam-iamc (setup.py): started Building wheel for pyam-iamc (setup.py): finished with status 'done' Created wheel for pyam-iamc: filename=pyam_iamc-0.3.0+10.g57be418-py2.py3-none-any.whl size=55050 sha256=28dbf149c6641b22e4b5796e5daf77ebdc95682020e534d6d9b77347285cad55 Stored in directory: /tmp/pip-ephem-wheel-cache-08c9xo3k/wheels/ac/59/c8/6fb3f327e8473a62b10ed24f2a19eda97fdc649122d375d5e2 Successfully built ixmp pyam-iamc ERROR: sphinxcontrib-bibtex 1.0.0 has requirement Sphinx>=2.0, but you'll have sphinx 1.8.5 which is incompatible. Installing collected packages: JPype1, click, numpy, toolz, dask, graphviz, python-dateutil, pandas, pint, PyYAML, xarray, xlsxwriter, xlrd, ixmp, numpydoc, argparse, kiwisolver, cycler, matplotlib, scipy, seaborn, pyam-iamc, latexcodec, pybtex, oset, pybtex-docutils, sphinxcontrib-bibtex Successfully installed JPype1-0.7.1 PyYAML-5.2 argparse-1.4.0 click-7.0 cycler-0.10.0 dask-2.9.0 graphviz-0.13.2 ixmp-0.2.0.post0.dev272 kiwisolver-1.1.0 latexcodec-1.0.7 matplotlib-3.0.2 numpy-1.17.4 numpydoc-0.9.1 oset-0.1.3 pandas-0.25.3 pint-0.9 pyam-iamc-0.3.0+10.g57be418 pybtex-0.22.2 pybtex-docutils-0.2.2 python-dateutil-2.8.1 scipy-1.4.0 seaborn-0.9.0 sphinxcontrib-bibtex-1.0.0 toolz-0.10.0 xarray-0.14.1 xlrd-1.2.0 xlsxwriter-1.2.6 [rtd-command-info] start-time: 2019-12-19T11:04:44.907136Z, end-time: 2019-12-19T11:04:45.889904Z, duration: 0, exit-code: 0 python /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/checkouts/latest/setup.py install --force running install running bdist_egg running egg_info creating message_ix.egg-info writing message_ix.egg-info/PKG-INFO writing dependency_links to message_ix.egg-info/dependency_links.txt writing entry points to message_ix.egg-info/entry_points.txt writing requirements to message_ix.egg-info/requires.txt writing top-level names to message_ix.egg-info/top_level.txt writing manifest file 'message_ix.egg-info/SOURCES.txt' reading manifest file 'message_ix.egg-info/SOURCES.txt' writing manifest file 'message_ix.egg-info/SOURCES.txt' installing library code to build/bdist.linux-x86_64/egg running install_lib running build_py creating build creating build/lib creating build/lib/message_ix copying message_ix/models.py -> build/lib/message_ix copying message_ix/__init__.py -> build/lib/message_ix copying message_ix/cli.py -> build/lib/message_ix copying message_ix/core.py -> build/lib/message_ix copying message_ix/macro.py -> build/lib/message_ix copying message_ix/utils.py -> build/lib/message_ix creating build/lib/message_ix/reporting copying message_ix/reporting/__init__.py -> build/lib/message_ix/reporting copying message_ix/reporting/pyam.py -> build/lib/message_ix/reporting copying message_ix/reporting/computations.py -> build/lib/message_ix/reporting creating build/lib/message_ix/testing copying message_ix/testing/__init__.py -> build/lib/message_ix/testing copying message_ix/testing/nightly.py -> build/lib/message_ix/testing creating build/lib/message_ix/tools copying message_ix/tools/__init__.py -> build/lib/message_ix/tools creating build/lib/message_ix/tools/add_year copying message_ix/tools/add_year/__init__.py -> build/lib/message_ix/tools/add_year copying message_ix/tools/add_year/cli.py -> build/lib/message_ix/tools/add_year creating build/lib/message_ix/model copying message_ix/model/MACRO_run.gms -> build/lib/message_ix/model copying message_ix/model/version.gms -> build/lib/message_ix/model copying message_ix/model/conopt.opt -> build/lib/message_ix/model copying message_ix/model/MESSAGE-MACRO_run.gms -> build/lib/message_ix/model copying message_ix/model/MESSAGE_run.gms -> build/lib/message_ix/model creating build/lib/message_ix/model/output copying message_ix/model/output/README.md -> build/lib/message_ix/model/output creating build/lib/message_ix/model/templates copying message_ix/model/templates/MESSAGE_master_template.gms -> build/lib/message_ix/model/templates creating build/lib/message_ix/model/MACRO copying message_ix/model/MACRO/macro_solve.gms -> build/lib/message_ix/model/MACRO copying message_ix/model/MACRO/macro_data_load.gms -> build/lib/message_ix/model/MACRO copying message_ix/model/MACRO/macro_reporting.gms -> build/lib/message_ix/model/MACRO copying message_ix/model/MACRO/macro_calibration.gms -> build/lib/message_ix/model/MACRO copying message_ix/model/MACRO/macro_core.gms -> build/lib/message_ix/model/MACRO creating build/lib/message_ix/model/data copying message_ix/model/data/README.md -> build/lib/message_ix/model/data creating build/lib/message_ix/model/MESSAGE copying message_ix/model/MESSAGE/data_load.gms -> build/lib/message_ix/model/MESSAGE copying message_ix/model/MESSAGE/parameter_def.gms -> build/lib/message_ix/model/MESSAGE copying message_ix/model/MESSAGE/reporting_for_MACRO.gms -> build/lib/message_ix/model/MESSAGE copying message_ix/model/MESSAGE/scaling_investment_costs.gms -> build/lib/message_ix/model/MESSAGE copying message_ix/model/MESSAGE/sets_maps_def.gms -> build/lib/message_ix/model/MESSAGE copying message_ix/model/MESSAGE/model_setup.gms -> build/lib/message_ix/model/MESSAGE copying message_ix/model/MESSAGE/auxiliary_settings.gms -> build/lib/message_ix/model/MESSAGE copying message_ix/model/MESSAGE/model_solve.gms -> build/lib/message_ix/model/MESSAGE copying message_ix/model/MESSAGE/reporting.gms -> build/lib/message_ix/model/MESSAGE copying message_ix/model/MESSAGE/version_check.gms -> build/lib/message_ix/model/MESSAGE copying message_ix/model/MESSAGE/model_core.gms -> build/lib/message_ix/model/MESSAGE creating build/lib/message_ix/model/includes copying message_ix/model/includes/aux_computation_time.gms -> build/lib/message_ix/model/includes copying message_ix/model/includes/period_parameter_assignment.gms -> build/lib/message_ix/model/includes creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/egg creating build/bdist.linux-x86_64/egg/message_ix copying build/lib/message_ix/models.py -> build/bdist.linux-x86_64/egg/message_ix copying build/lib/message_ix/__init__.py -> build/bdist.linux-x86_64/egg/message_ix copying build/lib/message_ix/cli.py -> build/bdist.linux-x86_64/egg/message_ix creating build/bdist.linux-x86_64/egg/message_ix/reporting copying build/lib/message_ix/reporting/__init__.py -> build/bdist.linux-x86_64/egg/message_ix/reporting copying build/lib/message_ix/reporting/pyam.py -> build/bdist.linux-x86_64/egg/message_ix/reporting copying build/lib/message_ix/reporting/computations.py -> build/bdist.linux-x86_64/egg/message_ix/reporting creating build/bdist.linux-x86_64/egg/message_ix/model copying build/lib/message_ix/model/MACRO_run.gms -> build/bdist.linux-x86_64/egg/message_ix/model copying build/lib/message_ix/model/version.gms -> build/bdist.linux-x86_64/egg/message_ix/model copying build/lib/message_ix/model/conopt.opt -> build/bdist.linux-x86_64/egg/message_ix/model copying build/lib/message_ix/model/MESSAGE-MACRO_run.gms -> build/bdist.linux-x86_64/egg/message_ix/model creating build/bdist.linux-x86_64/egg/message_ix/model/output copying build/lib/message_ix/model/output/README.md -> build/bdist.linux-x86_64/egg/message_ix/model/output creating build/bdist.linux-x86_64/egg/message_ix/model/templates copying build/lib/message_ix/model/templates/MESSAGE_master_template.gms -> build/bdist.linux-x86_64/egg/message_ix/model/templates copying build/lib/message_ix/model/MESSAGE_run.gms -> build/bdist.linux-x86_64/egg/message_ix/model creating build/bdist.linux-x86_64/egg/message_ix/model/MACRO copying build/lib/message_ix/model/MACRO/macro_solve.gms -> build/bdist.linux-x86_64/egg/message_ix/model/MACRO copying build/lib/message_ix/model/MACRO/macro_data_load.gms -> build/bdist.linux-x86_64/egg/message_ix/model/MACRO copying build/lib/message_ix/model/MACRO/macro_reporting.gms -> build/bdist.linux-x86_64/egg/message_ix/model/MACRO copying build/lib/message_ix/model/MACRO/macro_calibration.gms -> build/bdist.linux-x86_64/egg/message_ix/model/MACRO copying build/lib/message_ix/model/MACRO/macro_core.gms -> build/bdist.linux-x86_64/egg/message_ix/model/MACRO creating build/bdist.linux-x86_64/egg/message_ix/model/data copying build/lib/message_ix/model/data/README.md -> build/bdist.linux-x86_64/egg/message_ix/model/data creating build/bdist.linux-x86_64/egg/message_ix/model/MESSAGE copying build/lib/message_ix/model/MESSAGE/data_load.gms -> build/bdist.linux-x86_64/egg/message_ix/model/MESSAGE copying build/lib/message_ix/model/MESSAGE/parameter_def.gms -> build/bdist.linux-x86_64/egg/message_ix/model/MESSAGE copying build/lib/message_ix/model/MESSAGE/reporting_for_MACRO.gms -> build/bdist.linux-x86_64/egg/message_ix/model/MESSAGE copying build/lib/message_ix/model/MESSAGE/scaling_investment_costs.gms -> build/bdist.linux-x86_64/egg/message_ix/model/MESSAGE copying build/lib/message_ix/model/MESSAGE/sets_maps_def.gms -> build/bdist.linux-x86_64/egg/message_ix/model/MESSAGE copying build/lib/message_ix/model/MESSAGE/model_setup.gms -> build/bdist.linux-x86_64/egg/message_ix/model/MESSAGE copying build/lib/message_ix/model/MESSAGE/auxiliary_settings.gms -> build/bdist.linux-x86_64/egg/message_ix/model/MESSAGE copying build/lib/message_ix/model/MESSAGE/model_solve.gms -> build/bdist.linux-x86_64/egg/message_ix/model/MESSAGE copying build/lib/message_ix/model/MESSAGE/reporting.gms -> build/bdist.linux-x86_64/egg/message_ix/model/MESSAGE copying build/lib/message_ix/model/MESSAGE/version_check.gms -> build/bdist.linux-x86_64/egg/message_ix/model/MESSAGE copying build/lib/message_ix/model/MESSAGE/model_core.gms -> build/bdist.linux-x86_64/egg/message_ix/model/MESSAGE creating build/bdist.linux-x86_64/egg/message_ix/model/includes copying build/lib/message_ix/model/includes/aux_computation_time.gms -> build/bdist.linux-x86_64/egg/message_ix/model/includes copying build/lib/message_ix/model/includes/period_parameter_assignment.gms -> build/bdist.linux-x86_64/egg/message_ix/model/includes copying build/lib/message_ix/core.py -> build/bdist.linux-x86_64/egg/message_ix creating build/bdist.linux-x86_64/egg/message_ix/testing copying build/lib/message_ix/testing/__init__.py -> build/bdist.linux-x86_64/egg/message_ix/testing copying build/lib/message_ix/testing/nightly.py -> build/bdist.linux-x86_64/egg/message_ix/testing copying build/lib/message_ix/macro.py -> build/bdist.linux-x86_64/egg/message_ix copying build/lib/message_ix/utils.py -> build/bdist.linux-x86_64/egg/message_ix creating build/bdist.linux-x86_64/egg/message_ix/tools copying build/lib/message_ix/tools/__init__.py -> build/bdist.linux-x86_64/egg/message_ix/tools creating build/bdist.linux-x86_64/egg/message_ix/tools/add_year copying build/lib/message_ix/tools/add_year/__init__.py -> build/bdist.linux-x86_64/egg/message_ix/tools/add_year copying build/lib/message_ix/tools/add_year/cli.py -> build/bdist.linux-x86_64/egg/message_ix/tools/add_year byte-compiling build/bdist.linux-x86_64/egg/message_ix/models.py to models.cpython-36.pyc byte-compiling build/bdist.linux-x86_64/egg/message_ix/__init__.py to __init__.cpython-36.pyc byte-compiling build/bdist.linux-x86_64/egg/message_ix/cli.py to cli.cpython-36.pyc byte-compiling build/bdist.linux-x86_64/egg/message_ix/reporting/__init__.py to __init__.cpython-36.pyc byte-compiling build/bdist.linux-x86_64/egg/message_ix/reporting/pyam.py to pyam.cpython-36.pyc byte-compiling build/bdist.linux-x86_64/egg/message_ix/reporting/computations.py to computations.cpython-36.pyc byte-compiling build/bdist.linux-x86_64/egg/message_ix/core.py to core.cpython-36.pyc byte-compiling build/bdist.linux-x86_64/egg/message_ix/testing/__init__.py to __init__.cpython-36.pyc byte-compiling build/bdist.linux-x86_64/egg/message_ix/testing/nightly.py to nightly.cpython-36.pyc byte-compiling build/bdist.linux-x86_64/egg/message_ix/macro.py to macro.cpython-36.pyc byte-compiling build/bdist.linux-x86_64/egg/message_ix/utils.py to utils.cpython-36.pyc byte-compiling build/bdist.linux-x86_64/egg/message_ix/tools/__init__.py to __init__.cpython-36.pyc byte-compiling build/bdist.linux-x86_64/egg/message_ix/tools/add_year/__init__.py to __init__.cpython-36.pyc byte-compiling build/bdist.linux-x86_64/egg/message_ix/tools/add_year/cli.py to cli.cpython-36.pyc creating build/bdist.linux-x86_64/egg/EGG-INFO copying message_ix.egg-info/PKG-INFO -> build/bdist.linux-x86_64/egg/EGG-INFO copying message_ix.egg-info/SOURCES.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying message_ix.egg-info/dependency_links.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying message_ix.egg-info/entry_points.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying message_ix.egg-info/requires.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying message_ix.egg-info/top_level.txt -> build/bdist.linux-x86_64/egg/EGG-INFO zip_safe flag not set; analyzing archive contents... message_ix.__pycache__.__init__.cpython-36: module references __file__ message_ix.__pycache__.cli.cpython-36: module references __file__ message_ix.__pycache__.models.cpython-36: module references __file__ message_ix.testing.__pycache__.nightly.cpython-36: module references __file__ creating dist creating 'dist/message_ix-1.2.0-py3.6.egg' and adding 'build/bdist.linux-x86_64/egg' to it removing 'build/bdist.linux-x86_64/egg' (and everything under it) Processing message_ix-1.2.0-py3.6.egg creating /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.6/site-packages/message_ix-1.2.0-py3.6.egg Extracting message_ix-1.2.0-py3.6.egg to /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.6/site-packages Adding message-ix 1.2.0 to easy-install.pth file Installing message-ix script to /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/bin Installed /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.6/site-packages/message_ix-1.2.0-py3.6.egg Processing dependencies for message-ix==1.2.0 Searching for XlsxWriter==1.2.6 Best match: XlsxWriter 1.2.6 Adding XlsxWriter 1.2.6 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.6/site-packages Searching for xlrd==1.2.0 Best match: xlrd 1.2.0 Adding xlrd 1.2.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.6/site-packages Searching for pandas==0.25.3 Best match: pandas 0.25.3 Adding pandas 0.25.3 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.6/site-packages Searching for ixmp==0.2.0.post0.dev272 Best match: ixmp 0.2.0.post0.dev272 Adding ixmp 0.2.0.post0.dev272 to easy-install.pth file Installing ixmp script to /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.6/site-packages Searching for Click==7.0 Best match: Click 7.0 Adding Click 7.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.6/site-packages Searching for pytz==2019.3 Best match: pytz 2019.3 Adding pytz 2019.3 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.6/site-packages Searching for python-dateutil==2.8.1 Best match: python-dateutil 2.8.1 Adding python-dateutil 2.8.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.6/site-packages Searching for numpy==1.17.4 Best match: numpy 1.17.4 Adding numpy 1.17.4 to easy-install.pth file Installing f2py script to /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/bin Installing f2py3 script to /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/bin Installing f2py3.6 script to /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.6/site-packages Searching for JPype1==0.7.1 Best match: JPype1 0.7.1 Adding JPype1 0.7.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.6/site-packages Searching for PyYAML==5.2 Best match: PyYAML 5.2 Adding PyYAML 5.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.6/site-packages Searching for xarray==0.14.1 Best match: xarray 0.14.1 Adding xarray 0.14.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.6/site-packages Searching for Pint==0.9 Best match: Pint 0.9 Adding Pint 0.9 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.6/site-packages Searching for graphviz==0.13.2 Best match: graphviz 0.13.2 Adding graphviz 0.13.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.6/site-packages Searching for dask==2.9.0 Best match: dask 2.9.0 Adding dask 2.9.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.6/site-packages Searching for six==1.13.0 Best match: six 1.13.0 Adding six 1.13.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.6/site-packages Searching for toolz==0.10.0 Best match: toolz 0.10.0 Adding toolz 0.10.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.6/site-packages Finished processing dependencies for message-ix==1.2.0 [rtd-command-info] start-time: 2019-12-19T11:04:46.806343Z, end-time: 2019-12-19T11:04:47.139267Z, duration: 0, exit-code: 0 cat doc/source/conf.py # -*- coding: utf-8 -*- # # message documentation build configuration file, created by # sphinx-quickstart on Mon Feb 8 16:15:24 2016. # # This file is execfile()d with the current directory set to its # containing dir. # # Note that not all possible configuration values are present in this # autogenerated file. # # All configuration values have a default; values that are commented out # serve to show the default. import sys import os try: from pathlib import Path except ImportError: pass import message_ix # -- General configuration ------------------------------------------------ # If your documentation needs a minimal Sphinx version, state it here. #needs_sphinx = '1.0' # Add any Sphinx extension module names here, as strings. They can be # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom # ones. sys.path.append('.') extensions = [ 'sphinx.ext.autodoc', 'sphinx.ext.doctest', 'sphinx.ext.intersphinx', 'sphinx.ext.todo', 'sphinx.ext.coverage', 'sphinx.ext.mathjax', 'sphinxcontrib.bibtex', 'sphinx.ext.autosummary', 'sphinx.ext.napoleon', ] # Extension only works for Python 3 if sys.version_info[0] == 3: sys.path.insert(0, os.path.abspath('..')) extensions.append('grab_gams_doc') # Add any paths that contain templates here, relative to this directory. templates_path = ['_templates'] # The suffix(es) of source filenames. # You can specify multiple suffix as a list of string: # source_suffix = ['.rst', '.md'] source_suffix = '.rst' # The encoding of source files. # source_encoding = 'utf-8-sig' # The master toctree document. master_doc = 'index' # General information about the project. project = u'MESSAGEix' copyright = u'2018, IIASA, Energy Program' author = u'IIASA, Energy Program' # The version info for the project you're documenting, acts as replacement for # |version| and |release|, also used in various other places throughout the # built documents. # # The short X.Y version. # version = as determined from function above # The full version, including alpha/beta/rc tags. version = message_ix.__version__ release = message_ix.__version__ # The language for content autogenerated by Sphinx. Refer to documentation # for a list of supported languages. # # This is also used if you do content translation via gettext catalogs. # Usually you set "language" from the command line for these cases. language = None # There are two options for replacing |today|: either, you set today to some # non-false value, then it is used: #today = '' # Else, today_fmt is used as the format for a strftime call. #today_fmt = '%B %d, %Y' # List of patterns, relative to source directory, that match files and # directories to ignore when looking for source files. exclude_patterns = ['_themes/*'] # The reST default role (used for this markup: `text`) to use for all # documents. #default_role = None # If true, '()' will be appended to :func: etc. cross-reference text. #add_function_parentheses = True # If true, the current module name will be prepended to all description # unit titles (such as .. function::). #add_module_names = True # If true, sectionauthor and moduleauthor directives will be shown in the # output. They are ignored by default. #show_authors = False # The name of the Pygments (syntax highlighting) style to use. pygments_style = 'sphinx' # A list of ignored prefixes for module index sorting. #modindex_common_prefix = [] # If true, keep warnings as "system message" paragraphs in the built documents. #keep_warnings = False # If true, `todo` and `todoList` produce output, else they produce nothing. todo_include_todos = True # -- Options for HTML output ---------------------------------------------- # The theme to use for HTML and HTML Help pages. See the documentation for # a list of builtin themes. html_theme = 'sphinx_rtd_theme' # Theme options are theme-specific and customize the look and feel of a theme # further. For a list of options available for each theme, see the # documentation. html_theme_options = {} # Add any paths that contain custom themes here, relative to this directory. #html_theme_path = [] # The name for this set of Sphinx documents. If None, it defaults to # " v documentation". #html_title = None # A shorter title for the navigation bar. Default is the same as html_title. #html_short_title = None # The name of an image file (relative to this directory) to place at the top # of the sidebar. html_logo = '_static/logo_white.png' # The name of an image file (within the static path) to use as favicon of the # docs. This file should be a Windows icon file (.ico) being 16x16 or 32x32 # pixels large. #html_favicon = None # Add any paths that contain custom static files (such as style sheets) here, # relative to this directory. They are copied after the builtin static files, # so a file named "default.css" will overwrite the builtin "default.css". html_static_path = ['_static'] def setup(app): app.add_stylesheet('custom.css') # Add any extra paths that contain custom files (such as robots.txt or # .htaccess) here, relative to this directory. These files are copied # directly to the root of the documentation. #html_extra_path = [] # If not '', a 'Last updated on:' timestamp is inserted at every page bottom, # using the given strftime format. #html_last_updated_fmt = '%b %d, %Y' # If true, SmartyPants will be used to convert quotes and dashes to # typographically correct entities. #html_use_smartypants = True # Custom sidebar templates, maps document names to template names. #html_sidebars = {} # Additional templates that should be rendered to pages, maps page names to # template names. #html_additional_pages = {} # If false, no module index is generated. #html_domain_indices = True # If false, no index is generated. #html_use_index = True # If true, the index is split into individual pages for each letter. #html_split_index = False # If true, links to the reST sources are added to the pages. #html_show_sourcelink = True # If true, "Created using Sphinx" is shown in the HTML footer. Default is True. #html_show_sphinx = True # If true, "(C) Copyright ..." is shown in the HTML footer. Default is True. #html_show_copyright = True # If true, an OpenSearch description file will be output, and all pages will # contain a tag referring to it. The value of this option must be the # base URL from which the finished HTML is served. #html_use_opensearch = '' # This is the file name suffix for HTML files (e.g. ".xhtml"). #html_file_suffix = None # Language to be used for generating the HTML full-text search index. # Sphinx supports the following languages: # 'da', 'de', 'en', 'es', 'fi', 'fr', 'hu', 'it', 'ja' # 'nl', 'no', 'pt', 'ro', 'ru', 'sv', 'tr' #html_search_language = 'en' # A dictionary with options for the search language support, empty by default. # Now only 'ja' uses this config value #html_search_options = {'type': 'default'} # The name of a javascript file (relative to the configuration directory) that # implements a search results scorer. If empty, the default will be used. #html_search_scorer = 'scorer.js' # Output file base name for HTML help builder. htmlhelp_basename = 'MESSAGEix_doc' # -- Options for LaTeX output --------------------------------------------- latex_elements = { # The paper size ('letterpaper' or 'a4paper'). #'papersize': 'letterpaper', # The font size ('10pt', '11pt' or '12pt'). #'pointsize': '10pt', # Additional stuff for the LaTeX preamble. #'preamble': '', # Latex figure (float) alignment #'figure_align': 'htbp', } # Grouping the document tree into LaTeX files. List of tuples # (source start file, target name, title, # author, documentclass [howto, manual, or own class]). latex_documents = [ (master_doc, 'message.tex', u'message Documentation', u'IIASA Energy Program', 'manual'), ] # The name of an image file (relative to this directory) to place at the top of # the title page. #latex_logo = None # For "manual" documents, if this is true, then toplevel headings are parts, # not chapters. #latex_use_parts = False # If true, show page references after internal links. #latex_show_pagerefs = False # If true, show URL addresses after external links. #latex_show_urls = False # Documents to append as an appendix to all manuals. #latex_appendices = [] # If false, no module index is generated. #latex_domain_indices = True # -- Options for manual page output --------------------------------------- # One entry per manual page. List of tuples # (source start file, name, description, authors, manual section). man_pages = [ (master_doc, 'message', u'message Documentation', [author], 1) ] # If true, show URL addresses after external links. #man_show_urls = False # -- Options for Texinfo output ------------------------------------------- # Grouping the document tree into Texinfo files. List of tuples # (source start file, target name, title, author, # dir menu entry, description, category) texinfo_documents = [ (master_doc, 'message', u'message Documentation', author, 'message', 'One line description of project.', 'Miscellaneous'), ] # Documents to append as an appendix to all manuals. #texinfo_appendices = [] # If false, no module index is generated. #texinfo_domain_indices = True # How to display URL addresses: 'footnote', 'no', or 'inline'. #texinfo_show_urls = 'footnote' # If true, do not generate a @detailmenu in the "Top" node's menu. #texinfo_no_detailmenu = False intersphinx_mapping = { 'dask': ('http://docs.dask.org/en/stable/', None), 'ixmp': ('https://message.iiasa.ac.at/projects/ixmp/en/latest/', None), 'pandas': ('https://pandas.pydata.org/pandas-docs/stable/', None), 'pint': ('https://pint.readthedocs.io/en/stable/', None), 'pyam': ('https://pyam-iamc.readthedocs.io/en/stable/', None), 'python': ('https://docs.python.org/3/', None), } # prolog for all rst files rst_prolog = """ .. |MESSAGEix| replace:: MESSAGE\ :emphasis:`ix` .. |ixmp| replace:: :emphasis:`ix modeling platform` .. |version| replace:: {} .. role:: strike .. role:: underline """.format(version) # Configuration for grab_gams_doc extension if sys.version_info[0] == 3: gams_source_dir = Path(__file__).parents[2] / 'message_ix' / 'model' gams_target_dir = 'model' ########################################################################### # auto-created readthedocs.org specific configuration # ########################################################################### # # The following code was added during an automated build on readthedocs.org # It is auto created and injected for every build. The result is based on the # conf.py.tmpl file found in the readthedocs.org codebase: # https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl # import importlib import sys import os.path from six import string_types from sphinx import version_info # Get suffix for proper linking to GitHub # This is deprecated in Sphinx 1.3+, # as each page can have its own suffix if globals().get('source_suffix', False): if isinstance(source_suffix, string_types): SUFFIX = source_suffix elif isinstance(source_suffix, (list, tuple)): # Sphinx >= 1.3 supports list/tuple to define multiple suffixes SUFFIX = source_suffix[0] elif isinstance(source_suffix, dict): # Sphinx >= 1.8 supports a mapping dictionary for multiple suffixes SUFFIX = list(source_suffix.keys())[0] # make a ``list()`` for py2/py3 compatibility else: # default to .rst SUFFIX = '.rst' else: SUFFIX = '.rst' # Add RTD Static Path. Add to the end because it overwrites previous files. if not 'html_static_path' in globals(): html_static_path = [] if os.path.exists('_static'): html_static_path.append('_static') # Add RTD Theme only if they aren't overriding it already using_rtd_theme = ( ( 'html_theme' in globals() and html_theme in ['default'] and # Allow people to bail with a hack of having an html_style 'html_style' not in globals() ) or 'html_theme' not in globals() ) if using_rtd_theme: theme = importlib.import_module('sphinx_rtd_theme') html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} if 'html_theme_path' in globals(): html_theme_path.append(theme.get_html_theme_path()) else: html_theme_path = [theme.get_html_theme_path()] if globals().get('websupport2_base_url', False): websupport2_base_url = 'https://readthedocs.com/websupport' websupport2_static_url = 'https://media.readthedocs.com/' #Add project information to the template context. context = { 'using_theme': using_rtd_theme, 'html_theme': html_theme, 'current_version': "latest", 'version_slug': "latest", 'MEDIA_URL': "https://media.readthedocs.com/media/", 'STATIC_URL': "https://media.readthedocs.com/", 'PRODUCTION_DOMAIN': "readthedocs.com", 'versions': [ ("master", "/en/master/"), ("latest", "/en/latest/"), ("stable", "/en/stable/"), ("v1.2.0", "/en/v1.2.0/"), ("1.2.x", "/en/1.2.x/"), ("parameter_doc_new", "/en/parameter_doc_new/"), ], 'downloads': [ ("pdf", "//readthedocs.com/projects/iiasa-energy-program-message-ix/downloads/pdf/latest/"), ("html", "//readthedocs.com/projects/iiasa-energy-program-message-ix/downloads/htmlzip/latest/"), ("epub", "//readthedocs.com/projects/iiasa-energy-program-message-ix/downloads/epub/latest/"), ], 'subprojects': [ ("iiasa-energy-program-ixmp", "https://message.iiasa.ac.at/projects/ixmp/en/stable/"), ("iiasa-energy-program-message-doc", "https://message.iiasa.ac.at/projects/global/en/latest/"), ], 'slug': 'iiasa-energy-program-message-ix', 'name': u'message_ix', 'rtd_language': u'en', 'programming_language': u'words', 'canonical_url': 'https://message.iiasa.ac.at/en/stable/', 'analytics_code': 'UA-134631150-1', 'single_version': False, 'conf_py_path': '/doc/source/', 'api_host': 'https://readthedocs.com', 'proxied_api_host': 'https://readthedocs.com', 'github_user': 'iiasa', 'github_repo': 'message_ix', 'github_version': 'master', 'display_github': True, 'bitbucket_user': 'None', 'bitbucket_repo': 'None', 'bitbucket_version': 'master', 'display_bitbucket': False, 'gitlab_user': 'None', 'gitlab_repo': 'None', 'gitlab_version': 'master', 'display_gitlab': False, 'READTHEDOCS': True, 'using_theme': (html_theme == "default"), 'new_theme': (html_theme == "sphinx_rtd_theme"), 'source_suffix': SUFFIX, 'ad_free': False, 'user_analytics_code': 'UA-134631150-1', 'global_analytics_code': 'UA-17997319-2', 'commit': '40ad4b5c', } if 'html_context' in globals(): html_context.update(context) else: html_context = context # Add custom RTD extension if 'extensions' in globals(): # Insert at the beginning because it can interfere # with other extensions. # See https://github.com/rtfd/readthedocs.org/pull/4054 extensions.insert(0, "readthedocs_ext.readthedocs") else: extensions = ["readthedocs_ext.readthedocs"] # Add External version warning banner to the external version documentation if 'branch' == 'external': extensions.insert(1, "readthedocs_ext.external_version_warning") project_language = 'en' # User's Sphinx configurations language_user = globals().get('language', None) latex_engine_user = globals().get('latex_engine', None) latex_elements_user = globals().get('latex_elements', None) # Remove this once xindy gets installed in Docker image and XINDYOPS # env variable is supported # https://github.com/rtfd/readthedocs-docker-images/pull/98 latex_use_xindy = False chinese = any([ language_user in ('zh_CN', 'zh_TW'), project_language in ('zh_CN', 'zh_TW'), ]) japanese = any([ language_user == 'ja', project_language == 'ja', ]) if chinese: latex_engine = latex_engine_user or 'xelatex' latex_elements_rtd = { 'preamble': '\\usepackage[UTF8]{ctex}\n', } latex_elements = latex_elements_user or latex_elements_rtd elif japanese: latex_engine = latex_engine_user or 'platex' [rtd-command-info] start-time: 2019-12-19T11:04:47.259973Z, end-time: 2019-12-19T11:05:03.590505Z, duration: 16, exit-code: 0 python sphinx-build -T -E -b readthedocs -d _build/doctrees-readthedocs -D language=en . _build/html Running Sphinx v1.8.5 loading translations [en]... done making output directory... generating GAMS sources... [ 4%] MACRO_run generating GAMS sources... [ 8%] version generating GAMS sources... [ 13%] MESSAGE-MACRO_run generating GAMS sources... [ 17%] MESSAGE_run generating GAMS sources... [ 21%] templates/MESSAGE_master_template generating GAMS sources... [ 26%] MACRO/macro_solve generating GAMS sources... [ 30%] MACRO/macro_data_load generating GAMS sources... [ 34%] MACRO/macro_reporting generating GAMS sources... [ 39%] MACRO/macro_calibration generating GAMS sources... [ 43%] MACRO/macro_core generating GAMS sources... [ 47%] MESSAGE/data_load generating GAMS sources... [ 52%] MESSAGE/parameter_def generating GAMS sources... [ 56%] MESSAGE/reporting_for_MACRO generating GAMS sources... [ 60%] MESSAGE/scaling_investment_costs generating GAMS sources... [ 65%] MESSAGE/sets_maps_def generating GAMS sources... [ 69%] MESSAGE/model_setup generating GAMS sources... [ 73%] MESSAGE/auxiliary_settings generating GAMS sources... [ 78%] MESSAGE/model_solve generating GAMS sources... 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[100%] includes/period_parameter_assignment loading intersphinx inventory from http://docs.dask.org/en/stable/objects.inv... loading intersphinx inventory from https://message.iiasa.ac.at/projects/ixmp/en/latest/objects.inv... loading intersphinx inventory from https://pandas.pydata.org/pandas-docs/stable/objects.inv... loading intersphinx inventory from https://pint.readthedocs.io/en/stable/objects.inv... loading intersphinx inventory from https://pyam-iamc.readthedocs.io/en/stable/objects.inv... loading intersphinx inventory from https://docs.python.org/3/objects.inv... building [mo]: targets for 0 po files that are out of date building [readthedocs]: targets for 24 source files that are out of date updating environment: 24 added, 0 changed, 0 removed reading sources... [ 4%] api reading sources... 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[100%] _static/ix_features.png copying static files... done copying readthedocs static files... done copying searchtools... done copying extra files... done dumping search index in English (code: en) ... done dumping object inventory... done build succeeded, 3 warnings. The HTML pages are in _build/html. [rtd-command-info] start-time: 2019-12-19T11:05:03.721288Z, end-time: 2019-12-19T11:05:14.270242Z, duration: 10, exit-code: 0 python sphinx-build -T -b readthedocssinglehtmllocalmedia -d _build/doctrees-readthedocssinglehtmllocalmedia -D language=en . _build/localmedia Running Sphinx v1.8.5 loading translations [en]... done making output directory... generating GAMS sources... [ 4%] MACRO_run generating GAMS sources... [ 8%] version generating GAMS sources... [ 13%] MESSAGE-MACRO_run generating GAMS sources... [ 17%] MESSAGE_run generating GAMS sources... [ 21%] templates/MESSAGE_master_template generating GAMS sources... [ 26%] MACRO/macro_solve generating GAMS sources... 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[100%] includes/period_parameter_assignment loading intersphinx inventory from http://docs.dask.org/en/stable/objects.inv... loading intersphinx inventory from https://message.iiasa.ac.at/projects/ixmp/en/latest/objects.inv... loading intersphinx inventory from https://pandas.pydata.org/pandas-docs/stable/objects.inv... loading intersphinx inventory from https://pint.readthedocs.io/en/stable/objects.inv... loading intersphinx inventory from https://pyam-iamc.readthedocs.io/en/stable/objects.inv... loading intersphinx inventory from https://docs.python.org/3/objects.inv... building [mo]: targets for 0 po files that are out of date building [readthedocssinglehtmllocalmedia]: all documents updating environment: 24 added, 0 changed, 0 removed reading sources... [ 4%] api reading sources... 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[100%] tutorials /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/checkouts/latest/doc/source/api.rst:33: WARNING: failed to import ixmp.testing.make_dantzig ../../CONTRIBUTING.rst:2: WARNING: Duplicate explicit target name: "message_ix". /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/checkouts/latest/doc/source/reporting.rst:308: WARNING: Unknown interpreted text role "type". looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done assembling single document... getting_started tutorials framework model/MESSAGE_run model/MESSAGE-MACRO_run api core model/MESSAGE/sets_maps_def model/MESSAGE/parameter_def model/MESSAGE/model_core model/MESSAGE/model_solve model/MESSAGE/reporting model/MESSAGE/scaling_investment_costs model/MACRO/macro_core guide efficiency debugging reporting tools/add_year notice contributing faq bibliography writing... done writing additional files... copying images... [ 50%] _static/ix_features.png copying images... [100%] _static/ix_components.png copying static files... done copying readthedocs static files... done copying extra files... done dumping object inventory... done build succeeded, 3 warnings. The HTML page is in _build/localmedia. [rtd-command-info] start-time: 2019-12-19T11:05:14.399125Z, end-time: 2019-12-19T11:05:24.448494Z, duration: 10, exit-code: 0 python sphinx-build -b latex -D language=en -d _build/doctrees . _build/latex Running Sphinx v1.8.5 loading translations [en]... done making output directory... generating GAMS sources... [ 4%] MACRO_run generating GAMS sources... [ 8%] version generating GAMS sources... [ 13%] MESSAGE-MACRO_run generating GAMS sources... [ 17%] MESSAGE_run generating GAMS sources... [ 21%] templates/MESSAGE_master_template generating GAMS sources... [ 26%] MACRO/macro_solve generating GAMS sources... [ 30%] MACRO/macro_data_load generating GAMS sources... 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[100%] tutorials /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/checkouts/latest/doc/source/api.rst:33: WARNING: failed to import ixmp.testing.make_dantzig ../../CONTRIBUTING.rst:2: WARNING: Duplicate explicit target name: "message_ix". /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/checkouts/latest/doc/source/reporting.rst:308: WARNING: Unknown interpreted text role "type". looking for now-outdated files... none found pickling environment... done checking consistency... done processing message.tex...index getting_started tutorials framework model/MESSAGE_run model/MESSAGE-MACRO_run api core model/MESSAGE/sets_maps_def model/MESSAGE/parameter_def model/MESSAGE/model_core model/MESSAGE/model_solve model/MESSAGE/reporting model/MESSAGE/scaling_investment_costs model/MACRO/macro_core guide efficiency debugging reporting tools/add_year notice contributing faq bibliography resolving references... writing... done copying images... [ 50%] _static/ix_features.png copying images... [100%] _static/ix_components.png copying TeX support files... done build succeeded, 3 warnings. The LaTeX files are in _build/latex. Run 'make' in that directory to run these through (pdf)latex (use `make latexpdf' here to do that automatically). [rtd-command-info] start-time: 2019-12-19T11:05:25.639489Z, end-time: 2019-12-19T11:05:25.973908Z, duration: 0, exit-code: 0 cat latexmkrc $latex = 'latex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $pdflatex = 'pdflatex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $lualatex = 'lualatex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $xelatex = 'xelatex --no-pdf ' . $ENV{'LATEXOPTS'} . ' %O %S'; $makeindex = 'makeindex -s python.ist %O -o %D %S'; add_cus_dep( "glo", "gls", 0, "makeglo" ); sub makeglo { return system( "makeindex -s gglo.ist -o '$_[0].gls' '$_[0].glo'" ); } [rtd-command-info] start-time: 2019-12-19T11:05:26.059045Z, end-time: 2019-12-19T11:05:32.020487Z, duration: 5, exit-code: 0 latexmk -r latexmkrc -pdf -f -dvi- -ps- -jobname=iiasa-energy-program-message-ix -interaction=nonstopmode Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 1, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 2, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 3, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 4, chunk 1. Subroutine makeglo redefined at (eval 11) line 7, chunk 1. 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LaTeX Warning: Reference `tools/add_year:module-message_ix.tools.add_year' on p age 91 undefined on input line 8293. LaTeX Warning: Reference `api:module-message_ix.utils' on page 91 undefined on input line 8294. [91] No file iiasa-energy-program-message-ix.ind. Package longtable Warning: Table widths have changed. Rerun LaTeX. (./iiasa-energy-program-message-ix.aux) Package rerunfilecheck Warning: File `iiasa-energy-program-message-ix.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on iiasa-energy-program-message-ix.pdf (95 pages, 955829 bytes). Transcript written on iiasa-energy-program-message-ix.log. Latexmk: Index file 'iiasa-energy-program-message-ix.idx' was written Latexmk: Missing input file: 'iiasa-energy-program-message-ix.ind' from line 'No file iiasa-energy-program-message-ix.ind.' Latexmk: References changed. Latexmk: References changed. Latexmk: Log file says output to 'iiasa-energy-program-message-ix.pdf' Latexmk: Log file says output to 'iiasa-energy-program-message-ix.pdf' Latexmk: List of undefined refs and citations: Citation `bibliography:huppmann-messageix-2018' on page 1 undefined on input line 86 Citation `bibliography:huppmann-messageix-2018' on page 3 undefined on input line 103 Citation `bibliography:huppmann-messageix-2018' on page 9 undefined on input line 441 Citation `bibliography:johnson-vre-2016' on page 9 undefined on input line 473 Citation `bibliography:keppo-short-2010' on page 30 undefined on input line 3149 Citation `bibliography:keppo-short-2010' on page 46 undefined on input line 4488 Citation `bibliography:keppo-short-2010' on page 47 undefined on input line 4513 Citation `bibliography:keppo-short-2010' on page 9 undefined on input line 477 Citation `bibliography:manne-buying-1992' on page 56 undefined on input line 5168 Citation `bibliography:manne-buying-1992' on page 57 undefined on input line 5243 Citation `bibliography:messner-users-1995' on page 3 undefined on input line 104 Citation `bibliography:sullivan-vre-2013' on page 28 undefined on input line 2827 Citation `bibliography:sullivan-vre-2013' on page 41 undefined on input line 4209 Citation `bibliography:sullivan-vre-2013' on page 42 undefined on input line 4286 Citation `bibliography:sullivan-vre-2013' on page 9 undefined on input line 472 Reference `api:module-message_ix.models' on page 91 undefined on input line 8289 Reference `api:module-message_ix.testing' on page 91 undefined on input line 8292 Reference `api:module-message_ix.utils' on page 91 undefined on input line 8294 Reference `reporting:module-ixmp.reporting.computations' on page 91 undefined on input line 8285 Reference `reporting:module-ixmp.reporting.utils' on page 91 undefined on input line 8286 Reference `reporting:module-message_ix.reporting.computations' on page 91 undefined on input line 8290 Reference `reporting:module-message_ix.reporting.pyam' on page 91 undefined on input line 8291 Reference `tools/add_year:module-message_ix.tools.add_year' on page 91 undefined on input line 8293 Latexmk: Summary of warnings: Latex failed to resolve 8 reference(s) Latex failed to resolve 16 citation(s) Rule 'makeindex iiasa-energy-program-message-ix.idx': File changes, etc: Non-existent destination files: 'iiasa-energy-program-message-ix.ind' ------------ Run number 1 of rule 'makeindex iiasa-energy-program-message-ix.idx' ------------ ------------ Running 'makeindex -s python.ist -o "iiasa-energy-program-message-ix.ind" "iiasa-energy-program-message-ix.idx"' ------------ Latexmk: applying rule 'makeindex iiasa-energy-program-message-ix.idx'... This is makeindex, version 2.15 [TeX Live 2017] (kpathsea + Thai support). Scanning style file ./python.ist.......done (7 attributes redefined, 0 ignored). Scanning input file iiasa-energy-program-message-ix.idx....done (155 entries accepted, 0 rejected). Sorting entries....done (1256 comparisons). Generating output file iiasa-energy-program-message-ix.ind....done (235 lines written, 0 warnings). Output written in iiasa-energy-program-message-ix.ind. Transcript written in iiasa-energy-program-message-ix.ilg. Rule 'pdflatex': File changes, etc: Changed files, or newly in use since previous run(s): 'iiasa-energy-program-message-ix.aux' 'iiasa-energy-program-message-ix.ind' ------------ Run number 2 of rule 'pdflatex' ------------ ------------ Running 'pdflatex -interaction=nonstopmode -recorder --jobname="iiasa-energy-program-message-ix" "message.tex"' ------------ Latexmk: applying rule 'pdflatex'... 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(rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. LaTeX Warning: There were undefined references. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on iiasa-energy-program-message-ix.pdf (99 pages, 982209 bytes). Transcript written on iiasa-energy-program-message-ix.log. Latexmk: Index file 'iiasa-energy-program-message-ix.idx' was written Latexmk: References changed. 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[9] [10 <./ix_components.png>] [11] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pcr.fd) Underfull \hbox (badness 10000) in paragraph at lines 691--692 []|[][]\T1/pcr/m/n/10 ixmp.model.get_model[][]\T1/ptm/m/n/10 (name, [12] Underfull \hbox (badness 10000) in paragraph at lines 710--710 []\T1/ptm/m/it/10 mp\T1/ptm/m/n/10 , \T1/ptm/m/it/10 model\T1/ptm/m/n/10 , \T1/ ptm/m/it/10 sce-nario=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ver-sion=None\T1/ptm /m/n/10 , \T1/ptm/m/it/10 an-no-ta-tion=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 803--804 []|[][]\T1/pcr/m/sl/10 vintage_and_active_years[][]\T1/ptm/m/n/10 ([ya_args, [13] Underfull \hbox (badness 10000) in paragraph at lines 910--911 []\T1/pcr/b/n/10 key_or_data \T1/ptm/m/n/10 ([][]\T1/pcr/m/sl/10 str[][] or ite rable of str or [][]range[][] or [][]dict[][] or [14] [15] [16] [17] [18] Underfull \hbox (badness 6094) in paragraph at lines 1619--1620 []\T1/pcr/b/n/10 key \T1/ptm/m/n/10 (\T1/pcr/m/sl/10 dataframe or key list or c oncatenated string, optional\T1/ptm/m/n/10 ) [19] [20] Underfull \hbox (badness 6559) in paragraph at lines 1836--1838 \T1/ptm/m/n/10 ping to use for GAMS CPLEX solver op-tions file. 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[79] [80] [81] [82] [83] [84] [85] [86] [87] [88] [89] [90] [91] (./iiasa-energy-program-message-ix.ind [92] Underfull \hbox (badness 10000) in paragraph at lines 17--18 []\T1/pcr/m/n/10 add_spatial_sets() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 mes-sage_ix .Scenario Underfull \hbox (badness 10000) in paragraph at lines 21--22 []\T1/pcr/m/n/10 add_year_par() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule mes- Underfull \hbox (badness 10000) in paragraph at lines 22--23 []\T1/pcr/m/n/10 add_year_set() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule mes- Underfull \hbox (badness 10000) in paragraph at lines 23--24 []\T1/pcr/m/n/10 aggregate() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 28--30 []\T1/pcr/m/n/10 as_pyam() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule mes- Underfull \hbox (badness 10000) in paragraph at lines 31--32 []\T1/pcr/m/n/10 as_sparse_xarray() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 36--38 []\T1/pcr/m/n/10 broadcast_map() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule mes - Underfull \hbox (badness 10000) in paragraph at lines 48--50 []\T1/pcr/m/n/10 collapse_message_cols() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod -ule mes- Underfull \hbox (badness 10000) in paragraph at lines 53--54 []\T1/pcr/m/n/10 concat() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule mes- Underfull \hbox (badness 10000) in paragraph at lines 56--57 []\T1/pcr/m/n/10 convert_pyam() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 mes-sage_ix.rep orting.Reporter Underfull \hbox (badness 10000) in paragraph at lines 60--61 []\T1/pcr/m/n/10 data_for_quantity() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 61--62 []\T1/pcr/m/n/10 DEFAULT_CPLEX_OPTIONS \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-u le mes- Underfull \hbox (badness 10000) in paragraph at lines 69--71 []\T1/pcr/m/n/10 disaggregate_shares() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-u le [93] Underfull \hbox (badness 10000) in paragraph at lines 81--82 []\T1/pcr/m/n/10 filter_concat_args() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 84--85 []\T1/pcr/m/n/10 from_scenario() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ixmp.reporting .Reporter class Underfull \hbox (badness 10000) in paragraph at lines 85--86 []\T1/pcr/m/n/10 from_str_or_key() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ixmp.reporti ng.Key class Underfull \hbox (badness 10000) in paragraph at lines 91--93 []\T1/pcr/m/n/10 GAMS_min_version \T1/ptm/m/n/10 (\T1/ptm/m/it/10 mes- Underfull \hbox (badness 10000) in paragraph at lines 115--117 []\T1/pcr/m/n/10 interpolate_1d() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule me s- Underfull \hbox (badness 10000) in paragraph at lines 117--119 []\T1/pcr/m/n/10 interpolate_2d() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule me s- Underfull \hbox (badness 10000) in paragraph at lines 128--129 []\T1/pcr/m/n/10 keys_for_quantity() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 133--134 []\T1/pcr/m/n/10 load_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 134--135 []\T1/pcr/m/n/10 load_scenario_data() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 mes-sage_ ix.Scenario Underfull \hbox (badness 10000) in paragraph at lines 141--143 []\T1/pcr/m/n/10 map_as_qty() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule mes- Underfull \hbox (badness 10000) in paragraph at lines 158--159 []\T1/pcr/m/n/10 name \T1/ptm/m/n/10 (\T1/ptm/m/it/10 mes-sage_ix.models.MESSAG E_MACRO at- Underfull \hbox (badness 10000) in paragraph at lines 164--165 []\T1/pcr/m/n/10 preload_timeseries() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 mes-sage_ ix.Scenario Underfull \hbox (badness 10000) in paragraph at lines 175--177 []\T1/pcr/m/n/10 read_version() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 mes-sage_ix.mod els.MESSAGE [94] Underfull \hbox (badness 10000) in paragraph at lines 181--182 []\T1/pcr/m/n/10 remove_timeseries() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 mes-sage_i x.Scenario Underfull \hbox (badness 10000) in paragraph at lines 212--213 []\T1/pcr/m/n/10 unit_uniform() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule mes- Underfull \hbox (badness 10000) in paragraph at lines 219--221 []\T1/pcr/m/n/10 vintage_and_active_years() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 mes - Underfull \hbox (badness 10000) in paragraph at lines 227--228 []\T1/pcr/m/n/10 write_report() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 228--230 []\T1/pcr/m/n/10 write_report() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule mes- [95]) (./iiasa-energy-program-message-ix.aux) LaTeX Warning: There were undefined references. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on iiasa-energy-program-message-ix.pdf (99 pages, 982287 bytes). 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