Read the Docs build information Build id: 269570 Project: cyverse-learning-materials-home Version: latest Commit: c9f8d87259fa92ad92018bb4aa03c4524f932373 Date: 2019-12-16T22:46:46.387812Z State: finished Success: True [rtd-command-info] start-time: 2019-12-16T22:46:46.877037Z, end-time: 2019-12-16T22:46:47.451528Z, duration: 0, exit-code: 0 git clone --no-single-branch --depth 50 https://github.com/CyVerse-learning-materials/learning-materials-home.git . Cloning into '.'... [rtd-command-info] start-time: 2019-12-16T22:46:47.670366Z, end-time: 2019-12-16T22:46:47.694716Z, duration: 0, exit-code: 0 git checkout --force origin/master Note: checking out 'origin/master'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at c9f8d87 Update quick_starts.rst [rtd-command-info] start-time: 2019-12-16T22:46:47.776035Z, end-time: 2019-12-16T22:46:47.795436Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2019-12-16T22:46:48.819793Z, end-time: 2019-12-16T22:46:51.771161Z, duration: 2, exit-code: 0 python2.7 -mvirtualenv --no-site-packages --no-download New python executable in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/envs/latest/bin/python2.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/envs/latest/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2019-12-16T22:46:51.882739Z, end-time: 2019-12-16T22:46:54.030099Z, duration: 2, exit-code: 0 python -m pip install --upgrade --cache-dir /home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/.cache/pip pip DEPRECATION: Python 2.7 will reach the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 won't be maintained after that date. A future version of pip will drop support for Python 2.7. Collecting pip Downloading https://files.pythonhosted.org/packages/00/b6/9cfa56b4081ad13874b0c6f96af8ce16cfbc1cb06bedf8e9164ce5551ec1/pip-19.3.1-py2.py3-none-any.whl (1.4MB) Installing collected packages: pip Found existing installation: pip 19.1.1 Uninstalling pip-19.1.1: Successfully uninstalled pip-19.1.1 Successfully installed pip-19.3.1 [rtd-command-info] start-time: 2019-12-16T22:46:54.117327Z, end-time: 2019-12-16T22:47:05.848973Z, duration: 11, exit-code: 0 python -m pip install --upgrade --cache-dir /home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/.cache/pip Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1 DEPRECATION: Python 2.7 will reach the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 won't be maintained after that date. A future version of pip will drop support for Python 2.7. 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The result is based on the # conf.py.tmpl file found in the readthedocs.org codebase: # https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl # import importlib import sys import os.path from six import string_types from sphinx import version_info # Get suffix for proper linking to GitHub # This is deprecated in Sphinx 1.3+, # as each page can have its own suffix if globals().get('source_suffix', False): if isinstance(source_suffix, string_types): SUFFIX = source_suffix elif isinstance(source_suffix, (list, tuple)): # Sphinx >= 1.3 supports list/tuple to define multiple suffixes SUFFIX = source_suffix[0] elif isinstance(source_suffix, dict): # Sphinx >= 1.8 supports a mapping dictionary for multiple suffixes SUFFIX = list(source_suffix.keys())[0] # make a ``list()`` for py2/py3 compatibility else: # default to .rst SUFFIX = '.rst' else: SUFFIX = '.rst' # Add RTD Static Path. Add to the end because it overwrites previous files. if not 'html_static_path' in globals(): html_static_path = [] if os.path.exists('_static'): html_static_path.append('_static') # Add RTD Theme only if they aren't overriding it already using_rtd_theme = ( ( 'html_theme' in globals() and html_theme in ['default'] and # Allow people to bail with a hack of having an html_style 'html_style' not in globals() ) or 'html_theme' not in globals() ) if using_rtd_theme: theme = importlib.import_module('sphinx_rtd_theme') html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} if 'html_theme_path' in globals(): html_theme_path.append(theme.get_html_theme_path()) else: html_theme_path = [theme.get_html_theme_path()] if globals().get('websupport2_base_url', False): websupport2_base_url = 'https://readthedocs.com/websupport' websupport2_static_url = 'https://media.readthedocs.com/' #Add project information to the template context. context = { 'using_theme': using_rtd_theme, 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"https://learning.cyverse.org/projects/cyverse-austria-workshop/en/latest/"), ("cyverse-tools-services-and-reproducible-science-workshop", "https://learning.cyverse.org/projects/cyverse-tools-services-and-reproducible-science-workshop/en/latest/"), ("cyverse-cyverse-reproducbility-tutorial", "https://learning.cyverse.org/projects/cyverse-cyverse-reproducbility-tutorial/en/latest/"), ], 'slug': 'cyverse-learning-materials-home', 'name': u'learning-materials-home', 'rtd_language': u'en', 'programming_language': u'words', 'canonical_url': 'https://learning.cyverse.org/en/latest/', 'analytics_code': '', 'single_version': False, 'conf_py_path': '/', 'api_host': 'https://readthedocs.com', 'proxied_api_host': 'https://readthedocs.com', 'github_user': 'CyVerse-learning-materials', 'github_repo': 'learning-materials-home', 'github_version': 'master', 'display_github': True, 'bitbucket_user': 'None', 'bitbucket_repo': 'None', 'bitbucket_version': 'master', 'display_bitbucket': False, 'gitlab_user': 'None', 'gitlab_repo': 'None', 'gitlab_version': 'master', 'display_gitlab': False, 'READTHEDOCS': True, 'using_theme': (html_theme == "default"), 'new_theme': (html_theme == "sphinx_rtd_theme"), 'source_suffix': SUFFIX, 'ad_free': False, 'user_analytics_code': '', 'global_analytics_code': 'UA-17997319-2', 'commit': 'c9f8d872', } if 'html_context' in globals(): html_context.update(context) else: html_context = context # Add custom RTD extension if 'extensions' in globals(): # Insert at the beginning because it can interfere # with other extensions. # See https://github.com/rtfd/readthedocs.org/pull/4054 extensions.insert(0, "readthedocs_ext.readthedocs") else: extensions = ["readthedocs_ext.readthedocs"] # Add External version warning banner to the external version documentation if 'branch' == 'external': extensions.insert(1, "readthedocs_ext.external_version_warning") project_language = 'en' # User's Sphinx configurations language_user = globals().get('language', None) latex_engine_user = globals().get('latex_engine', None) latex_elements_user = globals().get('latex_elements', None) # Remove this once xindy gets installed in Docker image and XINDYOPS # env variable is supported # https://github.com/rtfd/readthedocs-docker-images/pull/98 latex_use_xindy = False chinese = any([ language_user in ('zh_CN', 'zh_TW'), project_language in ('zh_CN', 'zh_TW'), ]) japanese = any([ language_user == 'ja', project_language == 'ja', ]) if chinese: latex_engine = latex_engine_user or 'xelatex' latex_elements_rtd = { 'preamble': '\\usepackage[UTF8]{ctex}\n', } latex_elements = latex_elements_user or latex_elements_rtd elif japanese: latex_engine = latex_engine_user or 'platex' [rtd-command-info] start-time: 2019-12-16T22:47:08.247982Z, end-time: 2019-12-16T22:47:10.554032Z, duration: 2, exit-code: 0 python sphinx-build -T -E -b readthedocs -d _build/doctrees-readthedocs -D language=en . _build/html Running Sphinx v1.8.5 loading translations [en]... done making output directory... building [mo]: targets for 0 po files that are out of date building [readthedocs]: targets for 10 source files that are out of date updating environment: 10 added, 0 changed, 0 removed reading sources... [ 10%] README reading sources... [ 20%] contributing reading sources... [ 30%] index reading sources... [ 40%] platform_guides reading sources... [ 50%] power_users reading sources... [ 60%] quick_starts reading sources... [ 70%] tools_and_apps reading sources... [ 80%] tutorials reading sources... [ 90%] webinars reading sources... [100%] workshops /home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/checkouts/latest/README.rst:21: WARNING: Duplicate explicit target name: "tutorials@cyverse.org". /home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/checkouts/latest/README.rst:170: WARNING: Duplicate substitution definition name: "Powered by CyVerse". /home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/checkouts/latest/contributing.rst:39: WARNING: Duplicate substitution definition name: "Github Repo Link". README.rst:21: WARNING: Duplicate explicit target name: "tutorials@cyverse.org". 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[ 10%] README writing output... [ 20%] contributing writing output... [ 30%] index writing output... [ 40%] platform_guides writing output... [ 50%] power_users writing output... [ 60%] quick_starts writing output... [ 70%] tools_and_apps writing output... [ 80%] tutorials writing output... [ 90%] webinars writing output... [100%] workshops generating indices... genindex writing additional pages... search copying images... [ 50%] ./img/homeicon.png copying images... [100%] ./img/cyverse_cmyk.png copying static files... WARNING: html_static_path entry u'/home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/checkouts/latest/_static' does not exist done copying readthedocs static files... done copying searchtools... done copying extra files... done dumping search index in English (code: en) ... done dumping object inventory... done build succeeded, 17 warnings. The HTML pages are in _build/html. [rtd-command-info] start-time: 2019-12-16T22:47:10.670672Z, end-time: 2019-12-16T22:47:12.874501Z, duration: 2, exit-code: 0 python sphinx-build -T -b readthedocssinglehtmllocalmedia -d _build/doctrees-readthedocssinglehtmllocalmedia -D language=en . _build/localmedia Running Sphinx v1.8.5 loading translations [en]... done making output directory... building [mo]: targets for 0 po files that are out of date building [readthedocssinglehtmllocalmedia]: all documents updating environment: 10 added, 0 changed, 0 removed reading sources... [ 10%] README reading sources... [ 20%] contributing reading sources... [ 30%] index reading sources... [ 40%] platform_guides reading sources... [ 50%] power_users reading sources... [ 60%] quick_starts reading sources... [ 70%] tools_and_apps reading sources... [ 80%] tutorials reading sources... [ 90%] webinars reading sources... [100%] workshops /home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/checkouts/latest/README.rst:21: WARNING: Duplicate explicit target name: "tutorials@cyverse.org". /home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/checkouts/latest/README.rst:170: WARNING: Duplicate substitution definition name: "Powered by CyVerse". /home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/checkouts/latest/contributing.rst:39: WARNING: Duplicate substitution definition name: "Github Repo Link". README.rst:21: WARNING: Duplicate explicit target name: "tutorials@cyverse.org". README.rst:170: WARNING: Duplicate substitution definition name: "Powered by CyVerse". /home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/checkouts/latest/platform_guides.rst:102: WARNING: Duplicate substitution definition name: "Github Repo Link". /home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/checkouts/latest/power_users.rst:36: WARNING: Undefined substitution referenced: "External Collaborative Partnership". /home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/checkouts/latest/power_users.rst:36: WARNING: Undefined substitution referenced: "ECP Request web form". /home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/checkouts/latest/quick_starts.rst:134: WARNING: Duplicate substitution definition name: "Data Store". /home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/checkouts/latest/tools_and_apps.rst:11: WARNING: Title underline too short. 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README platform_guides tools_and_apps quick_starts tutorials workshops webinars contributing power_users writing... done writing additional files... copying images... [ 50%] ./img/homeicon.png copying images... [100%] ./img/cyverse_cmyk.png copying static files... WARNING: html_static_path entry u'/home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/checkouts/latest/_static' does not exist done copying readthedocs static files... done copying extra files... done dumping object inventory... done build succeeded, 17 warnings. The HTML page is in _build/localmedia.